Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013297
(995 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035565.2| retinol-binding protein 4 [Bos taurus]. 382 e-106
Alignment gi|NP_001069769.1| apolipoprotein D precursor [Bos taurus]. 49 9e-06
>ref|NP_001035565.2| retinol-binding protein 4 [Bos taurus].
Length = 201
Score = 382 bits (981), Expect = e-106
Identities = 181/188 (96%), Positives = 185/188 (98%)
Frame = +1
Query: 121 GSAQAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSA 300
GSA+AERDCRVSSFRVKENFDKARF+GTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSA
Sbjct: 14 GSARAERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSA 73
Query: 301 TAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYDTYA 480
TAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDY+T+A
Sbjct: 74 TAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYETFA 133
Query: 481 VQYSCRLQNLDGTCADSYSFVFARDPHGFSPEVQKIVRQRQEELCLARQYRLITHNGYCD 660
VQYSCRL NLDGTCADSYSFVFARDP GFSPEVQKIVRQRQEELCLARQYRLI HNGYCD
Sbjct: 134 VQYSCRLLNLDGTCADSYSFVFARDPSGFSPEVQKIVRQRQEELCLARQYRLIPHNGYCD 193
Query: 661 GKSERNIL 684
GKSERNIL
Sbjct: 194 GKSERNIL 201
>ref|NP_001069769.1| apolipoprotein D precursor [Bos taurus].
Length = 189
Score = 48.5 bits (114), Expect = 9e-06
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Frame = +1
Query: 166 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAK-----GRVRLLN 330
V+ENFD ++ G WY + +K P I A +S+ ENG++ K G V +
Sbjct: 33 VQENFDVNKYLGKWYEI-EKIPVSFEKGSCIQANYSLKENGNVEVINKELRADGTVNQIE 91
Query: 331 NWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYDTYAVQYSC 495
T + +PAK +K+ F + +W++ TDY+ YA+ YSC
Sbjct: 92 G-------EATPENITEPAKLAVKF-----FWFMPSAPYWVLATDYENYALVYSC 134
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,960,585
Number of extensions: 730047
Number of successful extensions: 3167
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3152
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013297
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013297
(995 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534969.2| PREDICTED: similar to retinol-binding protein 4... 367 e-102
>ref|XP_534969.2| PREDICTED: similar to retinol-binding protein 4, plasma precursor
[Canis familiaris].
Length = 267
Score = 367 bits (943), Expect = e-102
Identities = 176/209 (84%), Positives = 184/209 (88%)
Frame = +1
Query: 58 PTGGLRSKMEXXXXXXXXXXXGSAQAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEG 237
P GGL ME GSA+AE DCRVS+F+VK+NFDKARF+GTWYAMAKKDPEG
Sbjct: 59 PVGGLPGTMEWVWALVLLAALGSARAESDCRVSNFQVKKNFDKARFAGTWYAMAKKDPEG 118
Query: 238 LFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVA 417
LFLQDNIVAEFSVDENG MSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVA
Sbjct: 119 LFLQDNIVAEFSVDENGRMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVA 178
Query: 418 SFLQKGNDDHWIIDTDYDTYAVQYSCRLQNLDGTCADSYSFVFARDPHGFSPEVQKIVRQ 597
SFLQKGNDDHWIIDTDYDTYAVQYSCRL NLDGTCADSYSFVF+RDP+G E QKIVRQ
Sbjct: 179 SFLQKGNDDHWIIDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPLEAQKIVRQ 238
Query: 598 RQEELCLARQYRLITHNGYCDGKSERNIL 684
RQEELCLARQYRLI HNGYCDG+SE N L
Sbjct: 239 RQEELCLARQYRLIVHNGYCDGRSEPNTL 267
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,293,603
Number of extensions: 740197
Number of successful extensions: 3196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3185
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013297
(995 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999222.1| retinol-binding protein 4 precursor [Sus scrofa]. 395 e-110
Alignment gi|XP_003360946.1| PREDICTED: apolipoprotein D-like [Sus scrofa]. 49 6e-06
Alignment gi|XP_003132650.1| PREDICTED: apolipoprotein D isoform 2 [Sus s... 49 6e-06
Alignment gi|XP_001926098.2| PREDICTED: apolipoprotein D isoform 1 [Sus s... 49 6e-06
>ref|NP_999222.1| retinol-binding protein 4 precursor [Sus scrofa].
Length = 201
Score = 395 bits (1014), Expect = e-110
Identities = 187/188 (99%), Positives = 187/188 (99%)
Frame = +1
Query: 121 GSAQAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSA 300
GSAQAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSA
Sbjct: 14 GSAQAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSA 73
Query: 301 TAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYDTYA 480
TAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYDTYA
Sbjct: 74 TAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYDTYA 133
Query: 481 VQYSCRLQNLDGTCADSYSFVFARDPHGFSPEVQKIVRQRQEELCLARQYRLITHNGYCD 660
QYSCRLQNLDGTCADSYSFVFARDPHGFSPEVQKIVRQRQEELCLARQYRLITHNGYCD
Sbjct: 134 AQYSCRLQNLDGTCADSYSFVFARDPHGFSPEVQKIVRQRQEELCLARQYRLITHNGYCD 193
Query: 661 GKSERNIL 684
GKSERNIL
Sbjct: 194 GKSERNIL 201
>ref|XP_003360946.1| PREDICTED: apolipoprotein D-like [Sus scrofa].
Length = 190
Score = 48.5 bits (114), Expect = 6e-06
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Frame = +1
Query: 166 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAK-----GRVRLLN 330
V+ENFD ++ G WY + +K P I A +S+ ENG++ K G V +
Sbjct: 33 VQENFDVNKYLGRWYEI-EKIPVSFEKGSCIQANYSLKENGNIKVINKELRADGTVNQIE 91
Query: 331 NWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYDTYAVQYSC 495
T + +PAK +K+ F + +W++ TDY+ YA+ YSC
Sbjct: 92 G-------EATPDNITEPAKLGVKF-----FWLMPSAPYWVLATDYENYALVYSC 134
>ref|XP_003132650.1| PREDICTED: apolipoprotein D isoform 2 [Sus scrofa].
Length = 190
Score = 48.5 bits (114), Expect = 6e-06
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Frame = +1
Query: 166 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAK-----GRVRLLN 330
V+ENFD ++ G WY + +K P I A +S+ ENG++ K G V +
Sbjct: 33 VQENFDVNKYLGRWYEI-EKIPVSFEKGSCIQANYSLKENGNIKVINKELRADGTVNQIE 91
Query: 331 NWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYDTYAVQYSC 495
T + +PAK +K+ F + +W++ TDY+ YA+ YSC
Sbjct: 92 G-------EATPDNITEPAKLGVKF-----FWLMPSAPYWVLATDYENYALVYSC 134
>ref|XP_001926098.2| PREDICTED: apolipoprotein D isoform 1 [Sus scrofa].
Length = 190
Score = 48.5 bits (114), Expect = 6e-06
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Frame = +1
Query: 166 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAK-----GRVRLLN 330
V+ENFD ++ G WY + +K P I A +S+ ENG++ K G V +
Sbjct: 33 VQENFDVNKYLGRWYEI-EKIPVSFEKGSCIQANYSLKENGNIKVINKELRADGTVNQIE 91
Query: 331 NWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYDTYAVQYSC 495
T + +PAK +K+ F + +W++ TDY+ YA+ YSC
Sbjct: 92 G-------EATPDNITEPAKLGVKF-----FWLMPSAPYWVLATDYENYALVYSC 134
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,118,146
Number of extensions: 495542
Number of successful extensions: 1953
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1940
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013297
(995 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001152959.1| retinol-binding protein 4 isoform 1 [Mus mus... 353 2e-97
Alignment gi|NP_035385.1| retinol-binding protein 4 isoform 2 precursor [... 348 5e-96
>ref|NP_001152959.1| retinol-binding protein 4 isoform 1 [Mus musculus].
Length = 245
Score = 353 bits (905), Expect = 2e-97
Identities = 165/207 (79%), Positives = 179/207 (86%)
Frame = +1
Query: 64 GGLRSKMEXXXXXXXXXXXGSAQAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLF 243
G LR +ME G AERDCRVSSFRVKENFDKARFSG WYA+AKKDPEGLF
Sbjct: 39 GRLRGEMEWVWALVLLAALGGGSAERDCRVSSFRVKENFDKARFSGLWYAIAKKDPEGLF 98
Query: 244 LQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASF 423
LQDNI+AEFSVDE GHMSATAKGRVRLL+NW+VCADMVGTFTDTEDPAKFKMKYWGVASF
Sbjct: 99 LQDNIIAEFSVDEKGHMSATAKGRVRLLSNWEVCADMVGTFTDTEDPAKFKMKYWGVASF 158
Query: 424 LQKGNDDHWIIDTDYDTYAVQYSCRLQNLDGTCADSYSFVFARDPHGFSPEVQKIVRQRQ 603
LQ+GNDDHWIIDTDYDT+A+QYSCRLQNLDGTCADSYSFVF+RDP+G SPE +++VRQRQ
Sbjct: 159 LQRGNDDHWIIDTDYDTFALQYSCRLQNLDGTCADSYSFVFSRDPNGLSPETRRLVRQRQ 218
Query: 604 EELCLARQYRLITHNGYCDGKSERNIL 684
EELCL RQYR I HNGYC + RN L
Sbjct: 219 EELCLERQYRWIEHNGYCQSRPSRNSL 245
>ref|NP_035385.1| retinol-binding protein 4 isoform 2 precursor [Mus musculus].
Length = 201
Score = 348 bits (892), Expect = 5e-96
Identities = 160/188 (85%), Positives = 173/188 (92%)
Frame = +1
Query: 121 GSAQAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSA 300
G AERDCRVSSFRVKENFDKARFSG WYA+AKKDPEGLFLQDNI+AEFSVDE GHMSA
Sbjct: 14 GGGSAERDCRVSSFRVKENFDKARFSGLWYAIAKKDPEGLFLQDNIIAEFSVDEKGHMSA 73
Query: 301 TAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYDTYA 480
TAKGRVRLL+NW+VCADMVGTFTDTEDPAKFKMKYWGVASFLQ+GNDDHWIIDTDYDT+A
Sbjct: 74 TAKGRVRLLSNWEVCADMVGTFTDTEDPAKFKMKYWGVASFLQRGNDDHWIIDTDYDTFA 133
Query: 481 VQYSCRLQNLDGTCADSYSFVFARDPHGFSPEVQKIVRQRQEELCLARQYRLITHNGYCD 660
+QYSCRLQNLDGTCADSYSFVF+RDP+G SPE +++VRQRQEELCL RQYR I HNGYC
Sbjct: 134 LQYSCRLQNLDGTCADSYSFVFSRDPNGLSPETRRLVRQRQEELCLERQYRWIEHNGYCQ 193
Query: 661 GKSERNIL 684
+ RN L
Sbjct: 194 SRPSRNSL 201
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,863,056
Number of extensions: 614685
Number of successful extensions: 2641
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2632
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013297
(995 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006735.2| retinol-binding protein 4 precursor [Homo sapie... 371 e-103
Alignment gi|NP_001638.1| apolipoprotein D precursor [Homo sapiens]. 50 4e-06
>ref|NP_006735.2| retinol-binding protein 4 precursor [Homo sapiens].
Length = 201
Score = 371 bits (953), Expect = e-103
Identities = 174/188 (92%), Positives = 180/188 (95%)
Frame = +1
Query: 121 GSAQAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSA 300
GS +AERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDE G MSA
Sbjct: 14 GSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSA 73
Query: 301 TAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYDTYA 480
TAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWI+DTDYDTYA
Sbjct: 74 TAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYA 133
Query: 481 VQYSCRLQNLDGTCADSYSFVFARDPHGFSPEVQKIVRQRQEELCLARQYRLITHNGYCD 660
VQYSCRL NLDGTCADSYSFVF+RDP+G PE QKIVRQRQEELCLARQYRLI HNGYCD
Sbjct: 134 VQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCD 193
Query: 661 GKSERNIL 684
G+SERN+L
Sbjct: 194 GRSERNLL 201
>ref|NP_001638.1| apolipoprotein D precursor [Homo sapiens].
Length = 189
Score = 49.7 bits (117), Expect = 4e-06
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Frame = +1
Query: 166 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVC 345
V+ENFD ++ G WY + +K P I A +S+ ENG ++++LN ++
Sbjct: 33 VQENFDVNKYLGRWYEI-EKIPTTFENGRCIQANYSLMENG--------KIKVLNQ-ELR 82
Query: 346 ADMVGTFTDTE---------DPAKFKMKY-WGVASFLQKGNDDHWIIDTDYDTYAVQYSC 495
AD GT E +PAK ++K+ W + S +WI+ TDY+ YA+ YSC
Sbjct: 83 AD--GTVNQIEGEATPVNLTEPAKLEVKFSWFMPSA------PYWILATDYENYALVYSC 134
Query: 496 ----RLQNLDGTCADSYSFVFARDPH 561
+L ++D ++++ AR+P+
Sbjct: 135 TCIIQLFHVD------FAWILARNPN 154
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,655,184
Number of extensions: 726376
Number of successful extensions: 3217
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3197
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013297
(995 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 426 e-116
>Sscrofa_Chr14
|| Length = 153851969
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 437 acgatgaccactggatcatcgacacggactatgacacctacgccgtgcagtactcctgcc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114771019 acgatgaccactggatcatcgacacggactatgacacctacgccgtgcagtactcctgcc 114770960
Query: 497 gcctccagaacctcgatggcacctgcgccgacagctactccttcgtgtttgcccgagacc 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114770959 gcctccagaacctcgatggcacctgcgccgacagctactccttcgtgtttgcccgagacc 114770900
Query: 557 cccacggcttctccccagaagtgcagaaaattgtgaggcagaggcaggaggagctgtgcc 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114770899 cccacggcttctccccagaagtgcagaaaattgtgaggcagaggcaggaggagctgtgcc 114770840
Query: 617 tggccaggcagtaccggctgatcactcacaatggt 651
|||||||||||||||||||||||||||||||||||
Sbjct: 114770839 tggccaggcagtaccggctgatcactcacaatggt 114770805
Score = 272 bits (137), Expect = 3e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 193 ttctccggcacctggtacgccatggccaagaaggaccccgaggggctctttctgcaggac 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114775330 ttctccggcacctggtacgccatggccaagaaggaccccgaggggctctttctgcaggac 114775271
Query: 253 aacatcgtcgccgaattctccgtggacgagaatggccacatgagcgccacggccaagggt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114775270 aacatcgtcgccgaattctccgtggacgagaatggccacatgagcgccacggccaagggt 114775211
Query: 313 cgagtccgtcttttaaa 329
|||||||||||||||||
Sbjct: 114775210 cgagtccgtcttttaaa 114775194
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 63 gggcggactccggagcaagatggaatgggtttgggcgctcgtgctactggcggcgctggg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114775555 gggcggactccggagcaagatggaatgggtttgggcgctcgtgctactggcggcgctggg 114775496
Query: 123 cagcgcccaggcagagcgcgactgccgagtgagcagcttccgagtcaaagagaacttcga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114775495 cagcgcccaggcagagcgcgactgccgagtgagcagcttccgagtcaaagagaacttcga 114775436
Query: 183 caaggctcgt 192
||||||||||
Sbjct: 114775435 caaggctcgt 114775426
Score = 232 bits (117), Expect = 3e-58
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 649 ggttactgtgatggcaaatcggaaagaaacattttgtagcaacatggagggtgtcacgtt 708
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 114769362 ggttactgtgatggcaaatcggaaagaaacattttgtagcaacatggagggtgtcatgtt 114769303
Query: 709 tcattaggaaacttccattaaccccttcagccctcaactaaactcctaggagtttagttt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114769302 tcattaggaaacttccattaaccccttcagccctcaactaaactcctaggagtttagttt 114769243
Query: 769 g 769
|
Sbjct: 114769242 g 114769242
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 330 taactgggacgtgtgcgcagacatggtgggcacctttacagacaccgaggaccctgccaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114775027 taactgggacgtgtgcgcagacatggtgggcacctttacagacaccgaggaccctgccaa 114774968
Query: 390 gttcaagatgaagtactggggcgtagcatccttcctccagaaaggaa 436
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114774967 gttcaagatgaagtactggggcgtagcatccttcctccagaaaggaa 114774921
Score = 168 bits (85), Expect = 4e-39
Identities = 147/159 (92%), Gaps = 9/159 (5%)
Strand = Plus / Minus
Query: 802 ttccagaaacaaaacccttcagtacatgtaaaaatatatgtgggggatgagtgaatctgt 861
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 114769209 ttccagaaacaaaacc-ttcagtacatgtaaaaatatatgtgggg-atgagtgaatctgt 114769152
Query: 862 ttgcactcaaatgtatgtcttccccttgaagttttctaaggaaatcattttgaggcttaa 921
|||||||||||||||||||||||| || |||||||||||| ||||| |||||||||| |
Sbjct: 114769151 ttgcactcaaatgtatgtcttccc--tggagttttctaagg-aatca-tttgaggctt-a 114769097
Query: 922 ggattccaaacttttaattttattaaaatatgtatagtt 960
|||||||| ||||| | |||||||||||||||||||||
Sbjct: 114769096 ggattccagactttga--tttattaaaatatgtatagtt 114769060
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 1 gctcgcttcccttgctccacgcgcgcctggacccgcggccacgcttgcgcgcagctcccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114775801 gctcgcttcccttgctccacgcgcgcctggacccgcggccacgcttgcgcgcagctcccg 114775742
Query: 61 acgg 64
||||
Sbjct: 114775741 acgg 114775738
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,273,264
Number of extensions: 272
Number of successful extensions: 272
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 7
Length of query: 995
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 974
Effective length of database: 2,808,413,156
Effective search space: 2735394413944
Effective search space used: 2735394413944
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)