Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013310
(948 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856049.1| PREDICTED: similar to cyclin-dependent kinase 2... 475 e-134
Alignment gi|XP_855969.1| PREDICTED: similar to cyclin-dependent kinase 2... 467 e-132
Alignment gi|XP_848347.1| PREDICTED: similar to cyclin-dependent kinase 2... 452 e-127
Alignment gi|XP_856011.1| PREDICTED: similar to cyclin-dependent kinase 2... 447 e-126
Alignment gi|XP_855929.1| PREDICTED: similar to cyclin-dependent kinase 2... 441 e-124
Alignment gi|XP_540442.2| PREDICTED: similar to Cell division protein kin... 393 e-109
Alignment gi|XP_855848.1| PREDICTED: similar to cyclin-dependent kinase 2... 386 e-107
Alignment gi|XP_849450.1| PREDICTED: similar to Cell division control pro... 340 9e-94
Alignment gi|XP_532760.2| PREDICTED: similar to Cell division protein kin... 302 3e-82
Alignment gi|XP_538015.2| PREDICTED: similar to PCTAIRE protein kinase 1 ... 281 6e-76
>ref|XP_856049.1| PREDICTED: similar to cyclin-dependent kinase 2 isoform 6 [Canis
familiaris].
Length = 298
Score = 475 bits (1223), Expect = e-134
Identities = 235/236 (99%), Positives = 236/236 (100%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRVLHRDLKPQNLLINAEG+IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY
Sbjct: 121 HRVLHRDLKPQNLLINAEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 180
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY
Sbjct: 181 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 236
>ref|XP_855969.1| PREDICTED: similar to cyclin-dependent kinase 2 isoform 4 [Canis
familiaris].
Length = 308
Score = 467 bits (1202), Expect = e-132
Identities = 235/246 (95%), Positives = 236/246 (95%), Gaps = 10/246 (4%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK----------SYLFQ 568
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK SYLFQ
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKKQSPLSLLRQSYLFQ 120
Query: 569 LLQGLAFCHSHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRA 748
LLQGLAFCHSHRVLHRDLKPQNLLINAEG+IKLADFGLARAFGVPVRTYTHEVVTLWYRA
Sbjct: 121 LLQGLAFCHSHRVLHRDLKPQNLLINAEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRA 180
Query: 749 PEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGV 928
PEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGV
Sbjct: 181 PEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGV 240
Query: 929 TSMPDY 946
TSMPDY
Sbjct: 241 TSMPDY 246
>ref|XP_848347.1| PREDICTED: similar to cyclin-dependent kinase 2 isoform 1 isoform 1
[Canis familiaris].
Length = 346
Score = 452 bits (1164), Expect = e-127
Identities = 235/284 (82%), Positives = 236/284 (83%), Gaps = 48/284 (16%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRVLHRDLKPQNLLINAEG+IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY
Sbjct: 121 HRVLHRDLKPQNLLINAEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 180
Query: 779 STAVDIWSLGCIFAEM-------------------------------------------- 826
STAVDIWSLGCIFAEM
Sbjct: 181 STAVDIWSLGCIFAEMHLVCTQHHARCCGEHRRNGRHSLCPLCSYLEVAASQGGGMTAVS 240
Query: 827 ----VTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
VTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY
Sbjct: 241 TPHPVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 284
>ref|XP_856011.1| PREDICTED: similar to cyclin-dependent kinase 2 isoform 5 [Canis
familiaris].
Length = 300
Score = 447 bits (1151), Expect = e-126
Identities = 225/238 (94%), Positives = 230/238 (96%), Gaps = 2/238 (0%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTG-IPLPLIK-SYLFQLLQGLAFC 592
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD + + PL L++ SYLFQLLQGLAFC
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDLTVVEKQSPLSLLRQSYLFQLLQGLAFC 120
Query: 593 HSHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 772
HSHRVLHRDLKPQNLLINAEG+IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK
Sbjct: 121 HSHRVLHRDLKPQNLLINAEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 180
Query: 773 YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY
Sbjct: 181 YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 238
>ref|XP_855929.1| PREDICTED: similar to cyclin-dependent kinase 2 isoform 3 [Canis
familiaris].
Length = 309
Score = 441 bits (1133), Expect = e-124
Identities = 227/247 (91%), Positives = 230/247 (93%), Gaps = 11/247 (4%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDA--SAL-TGIPLPLIKS--------YLF 565
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD+ S L G LP + S YLF
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDSLLSVLGLGSLLPELFSIYQQTFIRYLF 120
Query: 566 QLLQGLAFCHSHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYR 745
QLLQGLAFCHSHRVLHRDLKPQNLLINAEG+IKLADFGLARAFGVPVRTYTHEVVTLWYR
Sbjct: 121 QLLQGLAFCHSHRVLHRDLKPQNLLINAEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 180
Query: 746 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG 925
APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG
Sbjct: 181 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG 240
Query: 926 VTSMPDY 946
VTSMPDY
Sbjct: 241 VTSMPDY 247
>ref|XP_540442.2| PREDICTED: similar to Cell division protein kinase 3 [Canis
familiaris].
Length = 303
Score = 393 bits (1010), Expect = e-109
Identities = 192/236 (81%), Positives = 213/236 (90%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
M+ FQKVEKIGEGTYGVVYKAKNK TG++VALKKIRLD ETEGVPSTAIREISL K L+
Sbjct: 1 MDVFQKVEKIGEGTYGVVYKAKNKETGQLVALKKIRLDLETEGVPSTAIREISLSKSLST 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
P LLDV+H+E KLYLVFEFL QDLKK+MD++ + +PL L+KSYLFQLLQG++FCHS
Sbjct: 61 PT--SLLDVVHSEKKLYLVFEFLSQDLKKYMDSAPASELPLHLVKSYLFQLLQGVSFCHS 118
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRV+HRDLKPQNLLIN G+IKLADFGLARAFGVP+RTYTHEVVTLWYRAPEILLG K+Y
Sbjct: 119 HRVIHRDLKPQNLLINELGAIKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGTKFY 178
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
STAVD+WS+GCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTP E WPGVT +PDY
Sbjct: 179 STAVDVWSIGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPSEATWPGVTQLPDY 234
>ref|XP_855848.1| PREDICTED: similar to cyclin-dependent kinase 2 isoform 2 isoform 2
[Canis familiaris].
Length = 264
Score = 386 bits (991), Expect = e-107
Identities = 201/236 (85%), Positives = 202/236 (85%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRVLHRDLKPQNLLINAEG+IKLADFGLARAFGVPVRTYTHE
Sbjct: 121 HRVLHRDLKPQNLLINAEGAIKLADFGLARAFGVPVRTYTHE------------------ 162
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
VTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY
Sbjct: 163 ----------------VTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 202
>ref|XP_849450.1| PREDICTED: similar to Cell division control protein 2 homolog (p34
protein kinase) (Cyclin-dependent kinase 1) (CDK1)
isoform 3 [Canis familiaris].
Length = 297
Score = 340 bits (873), Expect = 9e-94
Identities = 166/238 (69%), Positives = 200/238 (84%), Gaps = 2/238 (0%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
ME++ K+EKIGEGTYGVVYK ++K TG+VVA+KKIRL++E EGVPSTAIREISLLKEL H
Sbjct: 1 MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLLQGLAFC 592
PNIV L DV+ +++LYL+FEFL DLKK++D S G + L+KSYL+Q+LQG+ FC
Sbjct: 61 PNIVSLQDVLMQDSRLYLIFEFLSMDLKKYLD-SIPPGQFMDSSLVKSYLYQILQGIVFC 119
Query: 593 HSHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 772
HS RVLHRDLKPQNLLI+ +G+IKLADFGLARAFG+P+R YTHEVVTLWYR+PE+LLG
Sbjct: 120 HSRRVLHRDLKPQNLLIDDKGTIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSA 179
Query: 773 YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
YST VDIWS+G IFAE+ T++ LF GDSEIDQLFRIFR LGTP+ VWP V S+ DY
Sbjct: 180 RYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTPNNEVWPEVESLQDY 237
>ref|XP_532760.2| PREDICTED: similar to Cell division protein kinase 5 (Tau protein
kinase II catalytic subunit) (TPKII catalytic subunit)
(Serine/threonine-protein kinase PSSALRE) (CRK6) [Canis
familiaris].
Length = 331
Score = 302 bits (773), Expect = 3e-82
Identities = 148/228 (64%), Positives = 178/228 (78%), Gaps = 1/228 (0%)
Frame = +2
Query: 266 IGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDV 445
IGEGTYG V+KAKN+ T E+VALK++RLD + EGVPS+A+REI LLKEL H NIV+L DV
Sbjct: 49 IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDV 108
Query: 446 IHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLK 625
+H++ KL LVFEF QDLKK+ D S + ++KS+LFQLL+GL FCHS VLHRDLK
Sbjct: 109 LHSDKKLTLVFEFCDQDLKKYFD-SCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLK 167
Query: 626 PQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSL 805
PQNLLIN G +KLADFGLARAFG+PVR Y+ EVVTLWYR P++L G K YST++D+WS
Sbjct: 168 PQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSA 227
Query: 806 GCIFAEMVTR-RALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
GCIFAE+ R LFPG+ DQL RIFR LGTP E WP +T +PDY
Sbjct: 228 GCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPAMTKLPDY 275
>ref|XP_538015.2| PREDICTED: similar to PCTAIRE protein kinase 1 isoform 1 [Canis
familiaris].
Length = 500
Score = 281 bits (719), Expect = 6e-76
Identities = 139/236 (58%), Positives = 177/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
+E + K++K+GEGTY VYK K+K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 166 LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 224
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D+IHTE L LVFE+L +DLK+++D I + +K +LFQLL+GLA+CH
Sbjct: 225 ANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNV-INMHNVKLFLFQLLRGLAYCHR 283
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN G +KLADFGLARA +P +TY++EVVTLWYR P+ILLG Y
Sbjct: 284 QKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDY 343
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM T R LFPG + +QL IFR LGTP E WPG+ S ++
Sbjct: 344 STQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 399
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,675,884
Number of extensions: 1170255
Number of successful extensions: 7952
Number of sequences better than 1.0e-05: 942
Number of HSP's gapped: 6269
Number of HSP's successfully gapped: 973
Length of query: 316
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 213
Effective length of database: 15,440,896
Effective search space: 3288910848
Effective search space used: 3288910848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013310
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013310
(948 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014934.1| cyclin-dependent kinase 2 [Bos taurus]. 474 e-134
Alignment gi|NP_001092648.1| cell division protein kinase 3 [Bos taurus]. 410 e-114
Alignment gi|NP_776441.1| cyclin-dependent kinase 1 [Bos taurus]. 340 1e-93
Alignment gi|NP_776442.1| cyclin-dependent kinase 5 [Bos taurus]. 313 2e-85
Alignment gi|NP_001094696.1| cell division protein kinase 16 [Bos taurus]. 281 6e-76
Alignment gi|XP_002687568.1| PREDICTED: PCTAIRE protein kinase 2-like [Bo... 278 5e-75
Alignment gi|XP_588580.5| PREDICTED: PCTAIRE protein kinase 2, partial [B... 278 5e-75
Alignment gi|NP_001076942.1| cyclin-dependent kinase 18 [Bos taurus]. 269 2e-72
Alignment gi|NP_001193705.1| cell division protein kinase 14 [Bos taurus]. 268 5e-72
Alignment gi|NP_001007812.2| cyclin-dependent kinase 11B [Bos taurus]. 253 2e-67
>ref|NP_001014934.1| cyclin-dependent kinase 2 [Bos taurus].
Length = 298
Score = 474 bits (1220), Expect = e-134
Identities = 234/236 (99%), Positives = 236/236 (100%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKAKNK+TGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRVLHRDLKPQNLLINA+GSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY
Sbjct: 121 HRVLHRDLKPQNLLINADGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 180
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY
Sbjct: 181 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 236
>ref|NP_001092648.1| cell division protein kinase 3 [Bos taurus].
Length = 305
Score = 410 bits (1053), Expect = e-114
Identities = 196/236 (83%), Positives = 219/236 (92%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
M+ FQKVEKIGEGTYGVVYKA+NK TG++VALKKIRLD ETEGVPSTAIREISLLKEL H
Sbjct: 1 MDMFQKVEKIGEGTYGVVYKARNKETGQLVALKKIRLDLETEGVPSTAIREISLLKELKH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIV+LLDV+H+E KLYLVFEFL QDLKK+MD++ + +PL L+K YLFQLLQG+ FCH+
Sbjct: 61 PNIVRLLDVVHSEKKLYLVFEFLSQDLKKYMDSTPASELPLHLVKRYLFQLLQGVNFCHT 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRV+HRDLKPQNLLI+ G+IKLADFGLARAFGVP+RTYTHEVVTLWYRAPEILLGCK+Y
Sbjct: 121 HRVIHRDLKPQNLLISELGTIKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGCKFY 180
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
STAVDIWS+GCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTP E +WPGVT +PDY
Sbjct: 181 STAVDIWSIGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPSEAMWPGVTQLPDY 236
>ref|NP_776441.1| cyclin-dependent kinase 1 [Bos taurus].
Length = 297
Score = 340 bits (872), Expect = 1e-93
Identities = 166/238 (69%), Positives = 200/238 (84%), Gaps = 2/238 (0%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
ME++ K+EKIGEGTYGVVYK ++K TG+VVA+KKIRL++E EGVPSTAIREISLLKEL H
Sbjct: 1 MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLLQGLAFC 592
PNIV L DV+ +++LYL+FEFL DLKK++D S G + L+KSYL+Q+LQG+ FC
Sbjct: 61 PNIVSLQDVLMQDSRLYLIFEFLSMDLKKYLD-SIPPGQFMDSSLVKSYLYQILQGIVFC 119
Query: 593 HSHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 772
HS RVLHRDLKPQNLLI+ +G+IKLADFGLARAFG+P+R YTHEVVTLWYR+PE+LLG
Sbjct: 120 HSRRVLHRDLKPQNLLIDDKGTIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSA 179
Query: 773 YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
YST VDIWS+G IFAE+ T++ LF GDSEIDQLFRIFR LGTP+ VWP V S+ DY
Sbjct: 180 GYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTPNNEVWPEVESLQDY 237
>ref|NP_776442.1| cyclin-dependent kinase 5 [Bos taurus].
Length = 292
Score = 313 bits (801), Expect = 2e-85
Identities = 152/237 (64%), Positives = 186/237 (78%), Gaps = 1/237 (0%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
M+ ++K+EKIGEGTYG V+KAKN+ T E+VALK++RLD + EGVPS+A+REI LLKEL H
Sbjct: 1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV+L DV+H++ KL LVFEF QDLKK+ D S + ++KS+LFQLL+GL FCHS
Sbjct: 61 KNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFD-SCNGDLDPEIVKSFLFQLLKGLGFCHS 119
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
VLHRDLKPQNLLIN G +KLADFGLARAFG+PVR Y+ EVVTLWYR P++L G K Y
Sbjct: 120 RNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLY 179
Query: 779 STAVDIWSLGCIFAEMVTR-RALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST++D+WS GCIFAE+ R LFPG+ DQL RIFR LGTP E WP +T +PDY
Sbjct: 180 STSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPAMTKLPDY 236
>ref|NP_001094696.1| cell division protein kinase 16 [Bos taurus].
Length = 496
Score = 281 bits (719), Expect = 6e-76
Identities = 139/236 (58%), Positives = 178/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
+E + K++K+GEGTY VYK K+K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 162 LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 220
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D+IHTE L LVFE+L +DLK+++D I + +K +LFQLL+GLA+CH
Sbjct: 221 ANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNI-INMHNVKLFLFQLLRGLAYCHR 279
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN G +KLADFGLARA +P +TY++EVVTLWYR P+ILLG Y
Sbjct: 280 QKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDY 339
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM T R LFPG + +QL IFR LGTP+E WPG+ S ++
Sbjct: 340 STQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPNEDTWPGILSNEEF 395
>ref|XP_002687568.1| PREDICTED: PCTAIRE protein kinase 2-like [Bos taurus].
Length = 711
Score = 278 bits (711), Expect = 5e-75
Identities = 135/236 (57%), Positives = 179/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
ME + K+EK+GEGTY VYK ++K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 377 METYIKLEKLGEGTYATVYKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 435
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D++HT+ L LVFE+L +DLK++MD + + +K +L+Q+L+GLA+CH
Sbjct: 436 ANIVTLHDIVHTDKSLTLVFEYLDKDLKQYMDDCGNI-MSMHNVKLFLYQILRGLAYCHR 494
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN +G +KLADFGLARA VP +TY++EVVTLWYR P++LLG Y
Sbjct: 495 RKVLHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEY 554
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM + R LFPG + D+L IFR LGTP + WPGV+S ++
Sbjct: 555 STQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQENWPGVSSNDEF 610
>ref|XP_588580.5| PREDICTED: PCTAIRE protein kinase 2, partial [Bos taurus].
Length = 687
Score = 278 bits (711), Expect = 5e-75
Identities = 135/236 (57%), Positives = 179/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
ME + K+EK+GEGTY VYK ++K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 353 METYIKLEKLGEGTYATVYKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 411
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D++HT+ L LVFE+L +DLK++MD + + +K +L+Q+L+GLA+CH
Sbjct: 412 ANIVTLHDIVHTDKSLTLVFEYLDKDLKQYMDDCGNI-MSMHNVKLFLYQILRGLAYCHR 470
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN +G +KLADFGLARA VP +TY++EVVTLWYR P++LLG Y
Sbjct: 471 RKVLHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEY 530
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM + R LFPG + D+L IFR LGTP + WPGV+S ++
Sbjct: 531 STQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQENWPGVSSNDEF 586
>ref|NP_001076942.1| cyclin-dependent kinase 18 [Bos taurus].
Length = 471
Score = 269 bits (688), Expect = 2e-72
Identities = 130/236 (55%), Positives = 176/236 (74%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
+E + K++K+GEGTY V+K ++K+T +VALK+IRL+ E EG P TAIRE+SLL+ L H
Sbjct: 138 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLRNLKH 196
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D++HTE L LVFE+L +DLK+++D + + +K ++FQLL+GLA+CH
Sbjct: 197 ANIVTLHDLVHTERSLTLVFEYLDRDLKQYLDHCGNL-MSMHNVKIFMFQLLRGLAYCHR 255
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
++LHRDLKPQNLLIN G +KLADFGLARA VP +TY++EVVTLWYR P++LLG Y
Sbjct: 256 RKILHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEY 315
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCI EM T R LFPG + ++L IFR LGTP E WPGV ++ ++
Sbjct: 316 STPLDMWGVGCIQYEMATGRPLFPGSTVKEELHLIFRLLGTPTEETWPGVMALTEF 371
>ref|NP_001193705.1| cell division protein kinase 14 [Bos taurus].
Length = 470
Score = 268 bits (685), Expect = 5e-72
Identities = 142/253 (56%), Positives = 178/253 (70%), Gaps = 1/253 (0%)
Frame = +2
Query: 191 PRPPLQGRADSTR*RFMENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGV 370
P P G+ADS ++K+EK+GEG+Y VYK K+KV G++VALK IRL E EG
Sbjct: 125 PTSPKFGKADS--------YEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEE-EGT 175
Query: 371 PSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLI 550
P TAIRE SLLK L H NIV L D+IHT+ L LVFE++H DL ++MD G+ +
Sbjct: 176 PFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVHTDLCQYMDKHP-GGLHPDNV 234
Query: 551 KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVV 730
K +LFQLL+GL++ H +LHRDLKPQNLLI+ G +KLADFGLARA VP TY++EVV
Sbjct: 235 KLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVV 294
Query: 731 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI-DQLFRIFRTLGTPD 907
TLWYR P++LLG YST +D+W +GCIF EM+ A FPG +I DQL RIF LGTP+
Sbjct: 295 TLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPN 354
Query: 908 EVVWPGVTSMPDY 946
E WPGV S+P +
Sbjct: 355 EDTWPGVHSLPHF 367
>ref|NP_001007812.2| cyclin-dependent kinase 11B [Bos taurus].
Length = 771
Score = 253 bits (646), Expect = 2e-67
Identities = 129/272 (47%), Positives = 184/272 (67%), Gaps = 4/272 (1%)
Frame = +2
Query: 137 PCFPLLGPRELGAAFCWVPR--PPLQGRADSTR*RFMENFQKVEKIGEGTYGVVYKAKNK 310
P P L P EL +P+ P LQG R +E FQ + +I EGTYGVVY+AK+K
Sbjct: 384 PDSPALSPIELKQE---LPKYLPALQGC------RSVEEFQCLNRIEEGTYGVVYRAKDK 434
Query: 311 VTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTEN--KLYLVFEF 484
T E+VALK+++++ E EG P T++REI+ + + HPNIV + +++ N K+Y+V +
Sbjct: 435 KTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNY 494
Query: 485 LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAEGSIK 664
+ DLK M+ +P +K+ + QLL+G+ H + +LHRDLK NLL++ G +K
Sbjct: 495 VEHDLKSLMETMKQPFLPGE-VKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILK 553
Query: 665 LADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRAL 844
+ DFGLAR +G P++ YT VVTLWYRAPE+LLG K YSTAVD+WS+GCIF E++T++ L
Sbjct: 554 VGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPL 613
Query: 845 FPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMP 940
FPG SEIDQ+ ++F+ LGTP E +WPG +P
Sbjct: 614 FPGKSEIDQINKVFKDLGTPSEKIWPGYNDLP 645
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,956,938
Number of extensions: 1134090
Number of successful extensions: 7045
Number of sequences better than 1.0e-05: 625
Number of HSP's gapped: 5884
Number of HSP's successfully gapped: 648
Length of query: 316
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,306,398
Effective search space: 3061569172
Effective search space used: 3061569172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013310
(948 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361812.1| PREDICTED: cyclin-dependent kinase 2 [Sus sc... 476 e-135
Alignment gi|XP_003131249.1| PREDICTED: cyclin-dependent kinase 3-like [S... 414 e-116
Alignment gi|XP_003126308.1| PREDICTED: cyclin-dependent kinase 2 [Sus sc... 387 e-108
Alignment gi|NP_001152776.1| cell division cycle 2 [Sus scrofa]. 340 5e-94
Alignment gi|XP_001924934.3| PREDICTED: cyclin-dependent kinase 1-like is... 316 1e-86
Alignment gi|NP_001038086.2| cyclin-dependent kinase 5 [Sus scrofa]. 313 1e-85
Alignment gi|XP_003135095.1| PREDICTED: cyclin-dependent kinase 16-like i... 281 4e-76
Alignment gi|XP_003135094.1| PREDICTED: cyclin-dependent kinase 16-like i... 281 4e-76
Alignment gi|XP_003135096.1| PREDICTED: cyclin-dependent kinase 16-like i... 281 4e-76
Alignment gi|XP_003135093.1| PREDICTED: cyclin-dependent kinase 16-like i... 281 4e-76
>ref|XP_003361812.1| PREDICTED: cyclin-dependent kinase 2 [Sus scrofa].
Length = 298
Score = 476 bits (1226), Expect = e-135
Identities = 236/236 (100%), Positives = 236/236 (100%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY
Sbjct: 121 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 180
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY
Sbjct: 181 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 236
>ref|XP_003131249.1| PREDICTED: cyclin-dependent kinase 3-like [Sus scrofa].
Length = 305
Score = 414 bits (1065), Expect = e-116
Identities = 199/236 (84%), Positives = 220/236 (93%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
M+ FQKVEKIGEGTYGVVYKAKNK TG++VALKKIRLD ETEGVPSTAIREISLLKEL H
Sbjct: 1 MDVFQKVEKIGEGTYGVVYKAKNKETGQLVALKKIRLDLETEGVPSTAIREISLLKELKH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIV+LLDV+H+E KLYLVFEFL QDLKK+MDA+ + +PL L+KSYLFQLLQG+ FCHS
Sbjct: 61 PNIVRLLDVVHSEKKLYLVFEFLSQDLKKYMDATPASELPLHLVKSYLFQLLQGVNFCHS 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRV+HRDLKPQNLLI+ G+IKLADFGLARAFGVP+RTYTHEVVTLWYRAPEILLGCK+Y
Sbjct: 121 HRVIHRDLKPQNLLISELGAIKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGCKFY 180
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
STAVD+WS+GCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTP E +WPGVT +PDY
Sbjct: 181 STAVDVWSIGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPSEAMWPGVTQLPDY 236
>ref|XP_003126308.1| PREDICTED: cyclin-dependent kinase 2 [Sus scrofa].
Length = 264
Score = 387 bits (994), Expect = e-108
Identities = 202/236 (85%), Positives = 202/236 (85%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHE
Sbjct: 121 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHE------------------ 162
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
VTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY
Sbjct: 163 ----------------VTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 202
>ref|NP_001152776.1| cell division cycle 2 [Sus scrofa].
Length = 297
Score = 340 bits (873), Expect = 5e-94
Identities = 166/238 (69%), Positives = 200/238 (84%), Gaps = 2/238 (0%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
ME++ K+EKIGEGTYGVVYK ++K TG+VVA+KKIRL++E EGVPSTAIREISLLKEL H
Sbjct: 1 MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLLQGLAFC 592
PNIV L DV+ +++LYL+FEFL DLKK++D S G + L+KSYL+Q+LQG+ FC
Sbjct: 61 PNIVSLQDVLMQDSRLYLIFEFLSMDLKKYLD-SIPPGQFMDSSLVKSYLYQILQGIVFC 119
Query: 593 HSHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 772
HS RVLHRDLKPQNLLI+ +G+IKLADFGLARAFG+P+R YTHEVVTLWYR+PE+LLG
Sbjct: 120 HSRRVLHRDLKPQNLLIDDKGTIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSA 179
Query: 773 YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
YST VDIWS+G IFAE+ T++ LF GDSEIDQLFRIFR LGTP+ VWP V S+ DY
Sbjct: 180 RYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTPNNEVWPEVESLQDY 237
>ref|XP_001924934.3| PREDICTED: cyclin-dependent kinase 1-like isoform 1, partial [Sus
scrofa].
Length = 292
Score = 316 bits (810), Expect = 1e-86
Identities = 158/232 (68%), Positives = 189/232 (81%), Gaps = 8/232 (3%)
Frame = +2
Query: 275 GTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT 454
GTYGVVYK ++K TG+VVA+KKIRL++E EGVPSTAIREISLLKEL HPNIV L DV+
Sbjct: 2 GTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVLMQ 61
Query: 455 ENKLYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKP 628
+++LYL+FEFL DLKK++D S G + L+KSYL+Q+LQG+ FCHS RVLHRDLKP
Sbjct: 62 DSRLYLIFEFLSMDLKKYLD-SIPPGQFMDSSLVKSYLYQILQGIVFCHSRRVLHRDLKP 120
Query: 629 QNLLINAEGSIKLADFGLARAFGVPVRTYTHE------VVTLWYRAPEILLGCKYYSTAV 790
QNLLI+ +G+IKLADFGLARAFG+P+R YTHE VVTLWYR+PE+LLG YST V
Sbjct: 121 QNLLIDDKGTIKLADFGLARAFGIPIRVYTHEMHLTSIVVTLWYRSPEVLLGSARYSTPV 180
Query: 791 DIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
DIWS+G IFAE+ T++ LF GDSEIDQLFRIFR LGTP+ VWP V S+ DY
Sbjct: 181 DIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTPNNEVWPEVESLQDY 232
>ref|NP_001038086.2| cyclin-dependent kinase 5 [Sus scrofa].
Length = 292
Score = 313 bits (801), Expect = 1e-85
Identities = 152/237 (64%), Positives = 186/237 (78%), Gaps = 1/237 (0%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
M+ ++K+EKIGEGTYG V+KAKN+ T E+VALK++RLD + EGVPS+A+REI LLKEL H
Sbjct: 1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV+L DV+H++ KL LVFEF QDLKK+ D S + ++KS+LFQLL+GL FCHS
Sbjct: 61 KNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFD-SCNGDLDPEIVKSFLFQLLKGLGFCHS 119
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
VLHRDLKPQNLLIN G +KLADFGLARAFG+PVR Y+ EVVTLWYR P++L G K Y
Sbjct: 120 RNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLY 179
Query: 779 STAVDIWSLGCIFAEMVTR-RALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST++D+WS GCIFAE+ R LFPG+ DQL RIFR LGTP E WP +T +PDY
Sbjct: 180 STSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPAMTKLPDY 236
>ref|XP_003135095.1| PREDICTED: cyclin-dependent kinase 16-like isoform 2 [Sus scrofa].
Length = 502
Score = 281 bits (719), Expect = 4e-76
Identities = 139/236 (58%), Positives = 177/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
+E + K++K+GEGTY VYK K+K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 168 LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 226
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D+IHTE L LVFE+L +DLK+++D I + +K +LFQLL+GLA+CH
Sbjct: 227 ANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNV-INMHNVKLFLFQLLRGLAYCHR 285
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN G +KLADFGLARA +P +TY++EVVTLWYR P+ILLG Y
Sbjct: 286 QKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDY 345
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM T R LFPG + +QL IFR LGTP E WPG+ S ++
Sbjct: 346 STQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 401
>ref|XP_003135094.1| PREDICTED: cyclin-dependent kinase 16-like isoform 1 [Sus scrofa].
Length = 577
Score = 281 bits (719), Expect = 4e-76
Identities = 139/236 (58%), Positives = 177/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
+E + K++K+GEGTY VYK K+K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 243 LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 301
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D+IHTE L LVFE+L +DLK+++D I + +K +LFQLL+GLA+CH
Sbjct: 302 ANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNV-INMHNVKLFLFQLLRGLAYCHR 360
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN G +KLADFGLARA +P +TY++EVVTLWYR P+ILLG Y
Sbjct: 361 QKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDY 420
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM T R LFPG + +QL IFR LGTP E WPG+ S ++
Sbjct: 421 STQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 476
>ref|XP_003135096.1| PREDICTED: cyclin-dependent kinase 16-like isoform 3 [Sus scrofa].
Length = 496
Score = 281 bits (719), Expect = 4e-76
Identities = 139/236 (58%), Positives = 177/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
+E + K++K+GEGTY VYK K+K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 162 LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 220
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D+IHTE L LVFE+L +DLK+++D I + +K +LFQLL+GLA+CH
Sbjct: 221 ANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNV-INMHNVKLFLFQLLRGLAYCHR 279
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN G +KLADFGLARA +P +TY++EVVTLWYR P+ILLG Y
Sbjct: 280 QKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDY 339
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM T R LFPG + +QL IFR LGTP E WPG+ S ++
Sbjct: 340 STQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 395
>ref|XP_003135093.1| PREDICTED: cyclin-dependent kinase 16-like isoform 3 [Sus scrofa].
Length = 502
Score = 281 bits (719), Expect = 4e-76
Identities = 139/236 (58%), Positives = 177/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
+E + K++K+GEGTY VYK K+K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 168 LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 226
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D+IHTE L LVFE+L +DLK+++D I + +K +LFQLL+GLA+CH
Sbjct: 227 ANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNV-INMHNVKLFLFQLLRGLAYCHR 285
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN G +KLADFGLARA +P +TY++EVVTLWYR P+ILLG Y
Sbjct: 286 QKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDY 345
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM T R LFPG + +QL IFR LGTP E WPG+ S ++
Sbjct: 346 STQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 401
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,164,524
Number of extensions: 731651
Number of successful extensions: 4670
Number of sequences better than 1.0e-05: 445
Number of HSP's gapped: 3925
Number of HSP's successfully gapped: 458
Length of query: 316
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,879,129
Effective search space: 1926770993
Effective search space used: 1926770993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013310
(948 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058036.1| cyclin-dependent kinase 2 isoform 2 [Mus muscul... 475 e-134
Alignment gi|NP_904326.1| cyclin-dependent kinase 2 isoform 1 [Mus muscul... 452 e-127
Alignment gi|NP_031685.2| cyclin-dependent kinase 1 [Mus musculus]. 338 4e-93
Alignment gi|NP_031694.1| cyclin-dependent kinase 5 [Mus musculus]. 313 2e-85
Alignment gi|NP_035179.1| cyclin-dependent kinase 16 [Mus musculus]. 281 5e-76
Alignment gi|NP_666351.2| cyclin-dependent kinase 17 [Mus musculus]. 279 3e-75
Alignment gi|NP_032821.1| cyclin-dependent kinase 18 [Mus musculus]. 273 2e-73
Alignment gi|NP_035204.2| cyclin-dependent kinase 14 [Mus musculus]. 268 5e-72
Alignment gi|NP_031687.2| cyclin-dependent kinase 11 [Mus musculus]. 253 2e-67
Alignment gi|NP_034004.2| cyclin-dependent kinase 7 [Mus musculus]. 252 3e-67
>ref|NP_058036.1| cyclin-dependent kinase 2 isoform 2 [Mus musculus].
Length = 298
Score = 475 bits (1223), Expect = e-134
Identities = 235/236 (99%), Positives = 236/236 (100%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKAKNK+TGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY
Sbjct: 121 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 180
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY
Sbjct: 181 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 236
>ref|NP_904326.1| cyclin-dependent kinase 2 isoform 1 [Mus musculus].
Length = 346
Score = 452 bits (1164), Expect = e-127
Identities = 235/284 (82%), Positives = 236/284 (83%), Gaps = 48/284 (16%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKAKNK+TGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY
Sbjct: 121 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 180
Query: 779 STAVDIWSLGCIFAEM-------------------------------------------- 826
STAVDIWSLGCIFAEM
Sbjct: 181 STAVDIWSLGCIFAEMHLVCTQHHAKCCGEHRRNGRHSLCPLCSYLEVAASQGGGMTAVS 240
Query: 827 ----VTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
VTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY
Sbjct: 241 APHPVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 284
>ref|NP_031685.2| cyclin-dependent kinase 1 [Mus musculus].
Length = 297
Score = 338 bits (867), Expect = 4e-93
Identities = 165/238 (69%), Positives = 200/238 (84%), Gaps = 2/238 (0%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
ME++ K+EKIGEGTYGVVYK +++VTG++VA+KKIRL++E EGVPSTAIREISLLKEL H
Sbjct: 1 MEDYIKIEKIGEGTYGVVYKGRHRVTGQIVAMKKIRLESEEEGVPSTAIREISLLKELRH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLLQGLAFC 592
PNIV L DV+ +++LYL+FEFL DLKK++D S G + L+KSYL Q+LQG+ FC
Sbjct: 61 PNIVSLQDVLMQDSRLYLIFEFLSMDLKKYLD-SIPPGQFMDSSLVKSYLHQILQGIVFC 119
Query: 593 HSHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 772
HS RVLHRDLKPQNLLI+ +G+IKLADFGLARAFG+P+R YTHEVVTLWYR+PE+LLG
Sbjct: 120 HSRRVLHRDLKPQNLLIDDKGTIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSA 179
Query: 773 YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
YST VDIWS+G IFAE+ T++ LF GDSEIDQLFRIFR LGTP+ VWP V S+ DY
Sbjct: 180 RYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTPNNEVWPEVESLQDY 237
>ref|NP_031694.1| cyclin-dependent kinase 5 [Mus musculus].
Length = 292
Score = 313 bits (801), Expect = 2e-85
Identities = 152/237 (64%), Positives = 186/237 (78%), Gaps = 1/237 (0%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
M+ ++K+EKIGEGTYG V+KAKN+ T E+VALK++RLD + EGVPS+A+REI LLKEL H
Sbjct: 1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV+L DV+H++ KL LVFEF QDLKK+ D S + ++KS+LFQLL+GL FCHS
Sbjct: 61 KNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFD-SCNGDLDPEIVKSFLFQLLKGLGFCHS 119
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
VLHRDLKPQNLLIN G +KLADFGLARAFG+PVR Y+ EVVTLWYR P++L G K Y
Sbjct: 120 RNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLY 179
Query: 779 STAVDIWSLGCIFAEMVTR-RALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST++D+WS GCIFAE+ R LFPG+ DQL RIFR LGTP E WP +T +PDY
Sbjct: 180 STSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPAMTKLPDY 236
>ref|NP_035179.1| cyclin-dependent kinase 16 [Mus musculus].
Length = 496
Score = 281 bits (719), Expect = 5e-76
Identities = 139/236 (58%), Positives = 177/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
+E + K++K+GEGTY VYK K+K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 162 LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 220
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D+IHTE L LVFE+L +DLK+++D I + +K +LFQLL+GLA+CH
Sbjct: 221 ANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNV-INMHNVKLFLFQLLRGLAYCHR 279
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN G +KLADFGLARA +P +TY++EVVTLWYR P+ILLG Y
Sbjct: 280 QKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDY 339
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM T R LFPG + +QL IFR LGTP E WPG+ S ++
Sbjct: 340 STQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 395
>ref|NP_666351.2| cyclin-dependent kinase 17 [Mus musculus].
Length = 523
Score = 279 bits (713), Expect = 3e-75
Identities = 135/236 (57%), Positives = 178/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
ME + K+EK+GEGTY VYK ++K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 189 METYIKLEKLGEGTYATVYKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 247
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D++HT+ L LVFE+L +DLK++MD + + +K +L+Q+L+GLA+CH
Sbjct: 248 ANIVTLHDIVHTDKSLTLVFEYLDKDLKQYMDDCGNI-MSMHNVKLFLYQILRGLAYCHR 306
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN G +KLADFGLARA VP +TY++EVVTLWYR P++LLG Y
Sbjct: 307 RKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEY 366
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM + R LFPG + D+L IFR LGTP + WPGV+S ++
Sbjct: 367 STQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGVSSNDEF 422
>ref|NP_032821.1| cyclin-dependent kinase 18 [Mus musculus].
Length = 451
Score = 273 bits (697), Expect = 2e-73
Identities = 132/236 (55%), Positives = 177/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
+E + K++K+GEGTY V+K ++K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 118 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 176
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D+IHT+ L LVFE+L DLK+++D + + +K ++FQLL+GLA+CH
Sbjct: 177 ANIVTLHDLIHTDRSLTLVFEYLDSDLKQYLDHCGNL-MNMHNVKIFMFQLLRGLAYCHH 235
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
++LHRDLKPQNLLIN G +KLADFGLARA VP +TY++EVVTLWYR P++LLG Y
Sbjct: 236 RKILHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEY 295
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCI EM T + LFPG + ++L IFR LGTP E WPGVTS+ ++
Sbjct: 296 STPIDMWGVGCILYEMATGKPLFPGSTVKEELHLIFRLLGTPTEESWPGVTSISEF 351
>ref|NP_035204.2| cyclin-dependent kinase 14 [Mus musculus].
Length = 469
Score = 268 bits (685), Expect = 5e-72
Identities = 142/253 (56%), Positives = 178/253 (70%), Gaps = 1/253 (0%)
Frame = +2
Query: 191 PRPPLQGRADSTR*RFMENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGV 370
P P G+ADS ++K+EK+GEG+Y VYK K+KV G++VALK IRL E EG
Sbjct: 124 PTSPKFGKADS--------YEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEE-EGT 174
Query: 371 PSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLI 550
P TAIRE SLLK L H NIV L D+IHT+ L LVFE++H DL ++MD G+ +
Sbjct: 175 PFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVHTDLCQYMDKHP-GGLHPDNV 233
Query: 551 KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVV 730
K +LFQLL+GL++ H +LHRDLKPQNLLI+ G +KLADFGLARA VP TY++EVV
Sbjct: 234 KLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVV 293
Query: 731 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI-DQLFRIFRTLGTPD 907
TLWYR P++LLG YST +D+W +GCIF EM+ A FPG +I DQL RIF LGTP+
Sbjct: 294 TLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPN 353
Query: 908 EVVWPGVTSMPDY 946
E WPGV S+P +
Sbjct: 354 EDTWPGVHSLPHF 366
>ref|NP_031687.2| cyclin-dependent kinase 11 [Mus musculus].
Length = 784
Score = 253 bits (645), Expect = 2e-67
Identities = 133/282 (47%), Positives = 187/282 (66%), Gaps = 4/282 (1%)
Frame = +2
Query: 107 SIPTWGRRAGPCFPLLGPRELGAAFCWVPR--PPLQGRADSTR*RFMENFQKVEKIGEGT 280
S PT G P P L P EL +P+ P LQG R +E FQ + +I EGT
Sbjct: 388 SAPTEGDYV-PDSPALSPIELKQE---LPKYLPALQGC------RSVEEFQCLNRIEEGT 437
Query: 281 YGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTEN 460
YGVVY+AK+K T E+VALK+++++ E EG P T++REI+ + + HPNIV + +++ N
Sbjct: 438 YGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSN 497
Query: 461 --KLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQN 634
K+Y+V ++ DLK M+ +P +K+ + QLL G+ H + +LHRDLK N
Sbjct: 498 MDKIYIVMNYVEHDLKSLMETMKQPFLPGE-VKTLMIQLLSGVKHLHDNWILHRDLKTSN 556
Query: 635 LLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 814
LL++ G +K+ DFGLAR +G P++ YT VVTLWYRAPE+LLG K YSTAVD+WS+GCI
Sbjct: 557 LLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTAVDMWSVGCI 616
Query: 815 FAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMP 940
F E++T++ LFPG S+IDQ+ +IF+ LGTP E +WPG +P
Sbjct: 617 FGELLTQKPLFPGKSDIDQINKIFKDLGTPSEKIWPGYNDLP 658
>ref|NP_034004.2| cyclin-dependent kinase 7 [Mus musculus].
Length = 346
Score = 252 bits (644), Expect = 3e-67
Identities = 120/238 (50%), Positives = 169/238 (71%), Gaps = 3/238 (1%)
Frame = +2
Query: 242 ENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETE---GVPSTAIREISLLKEL 412
+ ++K++ +GEG + VYKA++K T ++VA+KKI+L +E G+ TA+REI LL+EL
Sbjct: 10 KRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL 69
Query: 413 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 592
+HPNI+ LLD ++ + LVF+F+ DL+ + ++L P IK+Y+ LQGL +
Sbjct: 70 SHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSH-IKAYMLMTLQGLEYL 128
Query: 593 HSHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 772
H H +LHRDLKP NLL++ G +KLADFGLA++FG P R YTH+VVT WYRAPE+L G +
Sbjct: 129 HQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGAR 188
Query: 773 YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
Y VD+W++GCI AE++ R PGDS++DQL RIF TLGTP E WP + S+PDY
Sbjct: 189 MYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDY 246
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,612,078
Number of extensions: 946060
Number of successful extensions: 5960
Number of sequences better than 1.0e-05: 682
Number of HSP's gapped: 4714
Number of HSP's successfully gapped: 699
Length of query: 316
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 215
Effective length of database: 12,583,923
Effective search space: 2705543445
Effective search space used: 2705543445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013310
(948 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001789.2| cyclin-dependent kinase 2 isoform 1 [Homo sapie... 471 e-133
Alignment gi|NP_001249.1| cyclin-dependent kinase 3 [Homo sapiens]. 402 e-112
Alignment gi|NP_439892.2| cyclin-dependent kinase 2 isoform 2 [Homo sapie... 382 e-106
Alignment gi|NP_001777.1| cyclin-dependent kinase 1 isoform 1 [Homo sapie... 340 9e-94
Alignment gi|NP_004926.1| cyclin-dependent kinase 5 isoform 1 [Homo sapie... 313 2e-85
Alignment gi|NP_001163931.1| cyclin-dependent kinase 16 isoform 3 [Homo s... 281 8e-76
Alignment gi|NP_148978.2| cyclin-dependent kinase 16 isoform 2 [Homo sapi... 281 8e-76
Alignment gi|NP_006192.1| cyclin-dependent kinase 16 isoform 1 [Homo sapi... 281 8e-76
Alignment gi|NP_002586.2| cyclin-dependent kinase 17 isoform 1 [Homo sapi... 279 3e-75
Alignment gi|NP_001163935.1| cyclin-dependent kinase 17 isoform 2 [Homo s... 279 3e-75
>ref|NP_001789.2| cyclin-dependent kinase 2 isoform 1 [Homo sapiens].
Length = 298
Score = 471 bits (1213), Expect = e-133
Identities = 232/236 (98%), Positives = 235/236 (99%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKA+NK+TGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRVLHRDLKPQNLLIN EG+IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 180
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY
Sbjct: 181 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 236
>ref|NP_001249.1| cyclin-dependent kinase 3 [Homo sapiens].
Length = 305
Score = 402 bits (1034), Expect = e-112
Identities = 195/236 (82%), Positives = 216/236 (91%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
M+ FQKVEKIGEGTYGVVYKAKN+ TG++VALKKIRLD E EGVPSTAIREISLLKEL H
Sbjct: 1 MDMFQKVEKIGEGTYGVVYKAKNRETGQLVALKKIRLDLEMEGVPSTAIREISLLKELKH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIV+LLDV+H E KLYLVFEFL QDLKK+MD++ + +PL LIKSYLFQLLQG++FCHS
Sbjct: 61 PNIVRLLDVVHNERKLYLVFEFLSQDLKKYMDSTPGSELPLHLIKSYLFQLLQGVSFCHS 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRV+HRDLKPQNLLIN G+IKLADFGLARAFGVP+RTYTHEVVTLWYRAPEILLG K+Y
Sbjct: 121 HRVIHRDLKPQNLLINELGAIKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGSKFY 180
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
+TAVDIWS+GCIFAEMVTR+ALFPGDSEIDQLFRIFR LGTP E WPGVT +PDY
Sbjct: 181 TTAVDIWSIGCIFAEMVTRKALFPGDSEIDQLFRIFRMLGTPSEDTWPGVTQLPDY 236
>ref|NP_439892.2| cyclin-dependent kinase 2 isoform 2 [Homo sapiens].
Length = 264
Score = 382 bits (981), Expect = e-106
Identities = 198/236 (83%), Positives = 201/236 (85%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
MENFQKVEKIGEGTYGVVYKA+NK+TGEVVALKKIRLDTETEGVPSTAIREISLLKELNH
Sbjct: 1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
HRVLHRDLKPQNLLIN EG+IKLADFGLARAFGVPVRTYTHE
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHE------------------ 162
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
VTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY
Sbjct: 163 ----------------VTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 202
>ref|NP_001777.1| cyclin-dependent kinase 1 isoform 1 [Homo sapiens].
Length = 297
Score = 340 bits (873), Expect = 9e-94
Identities = 166/238 (69%), Positives = 200/238 (84%), Gaps = 2/238 (0%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
ME++ K+EKIGEGTYGVVYK ++K TG+VVA+KKIRL++E EGVPSTAIREISLLKEL H
Sbjct: 1 MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLLQGLAFC 592
PNIV L DV+ +++LYL+FEFL DLKK++D S G + L+KSYL+Q+LQG+ FC
Sbjct: 61 PNIVSLQDVLMQDSRLYLIFEFLSMDLKKYLD-SIPPGQYMDSSLVKSYLYQILQGIVFC 119
Query: 593 HSHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 772
HS RVLHRDLKPQNLLI+ +G+IKLADFGLARAFG+P+R YTHEVVTLWYR+PE+LLG
Sbjct: 120 HSRRVLHRDLKPQNLLIDDKGTIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSA 179
Query: 773 YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
YST VDIWS+G IFAE+ T++ LF GDSEIDQLFRIFR LGTP+ VWP V S+ DY
Sbjct: 180 RYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTPNNEVWPEVESLQDY 237
>ref|NP_004926.1| cyclin-dependent kinase 5 isoform 1 [Homo sapiens].
Length = 292
Score = 313 bits (801), Expect = 2e-85
Identities = 152/237 (64%), Positives = 186/237 (78%), Gaps = 1/237 (0%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
M+ ++K+EKIGEGTYG V+KAKN+ T E+VALK++RLD + EGVPS+A+REI LLKEL H
Sbjct: 1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH 60
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV+L DV+H++ KL LVFEF QDLKK+ D S + ++KS+LFQLL+GL FCHS
Sbjct: 61 KNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFD-SCNGDLDPEIVKSFLFQLLKGLGFCHS 119
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
VLHRDLKPQNLLIN G +KLADFGLARAFG+PVR Y+ EVVTLWYR P++L G K Y
Sbjct: 120 RNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLY 179
Query: 779 STAVDIWSLGCIFAEMVTR-RALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST++D+WS GCIFAE+ R LFPG+ DQL RIFR LGTP E WP +T +PDY
Sbjct: 180 STSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDY 236
>ref|NP_001163931.1| cyclin-dependent kinase 16 isoform 3 [Homo sapiens].
Length = 570
Score = 281 bits (718), Expect = 8e-76
Identities = 139/236 (58%), Positives = 177/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
+E + K++K+GEGTY VYK K+K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 236 LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 294
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D+IHTE L LVFE+L +DLK+++D I + +K +LFQLL+GLA+CH
Sbjct: 295 ANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNI-INMHNVKLFLFQLLRGLAYCHR 353
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN G +KLADFGLARA +P +TY++EVVTLWYR P+ILLG Y
Sbjct: 354 QKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDY 413
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM T R LFPG + +QL IFR LGTP E WPG+ S ++
Sbjct: 414 STQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 469
>ref|NP_148978.2| cyclin-dependent kinase 16 isoform 2 [Homo sapiens].
Length = 502
Score = 281 bits (718), Expect = 8e-76
Identities = 139/236 (58%), Positives = 177/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
+E + K++K+GEGTY VYK K+K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 168 LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 226
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D+IHTE L LVFE+L +DLK+++D I + +K +LFQLL+GLA+CH
Sbjct: 227 ANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNI-INMHNVKLFLFQLLRGLAYCHR 285
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN G +KLADFGLARA +P +TY++EVVTLWYR P+ILLG Y
Sbjct: 286 QKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDY 345
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM T R LFPG + +QL IFR LGTP E WPG+ S ++
Sbjct: 346 STQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 401
>ref|NP_006192.1| cyclin-dependent kinase 16 isoform 1 [Homo sapiens].
Length = 496
Score = 281 bits (718), Expect = 8e-76
Identities = 139/236 (58%), Positives = 177/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
+E + K++K+GEGTY VYK K+K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 162 LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 220
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D+IHTE L LVFE+L +DLK+++D I + +K +LFQLL+GLA+CH
Sbjct: 221 ANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNI-INMHNVKLFLFQLLRGLAYCHR 279
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN G +KLADFGLARA +P +TY++EVVTLWYR P+ILLG Y
Sbjct: 280 QKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDY 339
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM T R LFPG + +QL IFR LGTP E WPG+ S ++
Sbjct: 340 STQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 395
>ref|NP_002586.2| cyclin-dependent kinase 17 isoform 1 [Homo sapiens].
Length = 523
Score = 279 bits (713), Expect = 3e-75
Identities = 134/236 (56%), Positives = 179/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
ME + K+EK+GEGTY VYK ++K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 189 METYIKLEKLGEGTYATVYKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 247
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D++HT+ L LVFE+L +DLK++MD + + +K +L+Q+L+GLA+CH
Sbjct: 248 ANIVTLHDIVHTDKSLTLVFEYLDKDLKQYMDDCGNI-MSMHNVKLFLYQILRGLAYCHR 306
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN +G +KLADFGLARA VP +TY++EVVTLWYR P++LLG Y
Sbjct: 307 RKVLHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEY 366
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM + R LFPG + D+L IFR LGTP + WPG++S ++
Sbjct: 367 STQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGISSNEEF 422
>ref|NP_001163935.1| cyclin-dependent kinase 17 isoform 2 [Homo sapiens].
Length = 523
Score = 279 bits (713), Expect = 3e-75
Identities = 134/236 (56%), Positives = 179/236 (75%)
Frame = +2
Query: 239 MENFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 418
ME + K+EK+GEGTY VYK ++K+T +VALK+IRL+ E EG P TAIRE+SLLK+L H
Sbjct: 189 METYIKLEKLGEGTYATVYKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKDLKH 247
Query: 419 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 598
NIV L D++HT+ L LVFE+L +DLK++MD + + +K +L+Q+L+GLA+CH
Sbjct: 248 ANIVTLHDIVHTDKSLTLVFEYLDKDLKQYMDDCGNI-MSMHNVKLFLYQILRGLAYCHR 306
Query: 599 HRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 778
+VLHRDLKPQNLLIN +G +KLADFGLARA VP +TY++EVVTLWYR P++LLG Y
Sbjct: 307 RKVLHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEY 366
Query: 779 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 946
ST +D+W +GCIF EM + R LFPG + D+L IFR LGTP + WPG++S ++
Sbjct: 367 STQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGISSNEEF 422
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,829,137
Number of extensions: 1141235
Number of successful extensions: 7493
Number of sequences better than 1.0e-05: 813
Number of HSP's gapped: 6037
Number of HSP's successfully gapped: 841
Length of query: 316
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,934,836
Effective search space: 3196054904
Effective search space used: 3196054904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013310
(948 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 474 e-131
gb|GL895424.2| Sus scrofa unplaced genomic scaffold ChrUScaf3308 244 7e-62
Sscrofa_Chr12 70 2e-09
>Sscrofa_Chr05
|| Length = 111506441
Score = 474 bits (239), Expect = e-131
Identities = 242/243 (99%)
Strand = Plus / Plus
Query: 92 agagatacgctgcgttccatcccgacctggggccgccgtgcagggccctgtttccccctc 151
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 22941174 agagatacgctgcgttccatcccgacctggggctgccgtgcagggccctgtttccccctc 22941233
Query: 152 ctcggcccccgagagctgggtgccgctttctgctgggttcccaggcccccgctccagggc 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22941234 ctcggcccccgagagctgggtgccgctttctgctgggttcccaggcccccgctccagggc 22941293
Query: 212 cgggctgattcgactcgctagcgcttcatggagaacttccaaaaagtggaaaagatcgga 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22941294 cgggctgattcgactcgctagcgcttcatggagaacttccaaaaagtggaaaagatcgga 22941353
Query: 272 gagggcacgtacggagttgtgtacaaagccaaaaacaaggtgacgggagaagtggtggcg 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22941354 gagggcacgtacggagttgtgtacaaagccaaaaacaaggtgacgggagaagtggtggcg 22941413
Query: 332 ctt 334
|||
Sbjct: 22941414 ctt 22941416
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 552 agagttatctgttccagctgcttcaggggctagctttttgccattctcatcgggtcttgc 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22943695 agagttatctgttccagctgcttcaggggctagctttttgccattctcatcgggtcttgc 22943754
Query: 612 accgagaccttaaacctcagaatctgcttatcaacgcagaaggatctatcaagttagcag 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22943755 accgagaccttaaacctcagaatctgcttatcaacgcagaaggatctatcaagttagcag 22943814
Query: 672 actttggactggccagagcctttggagtccctgttcgtacatacacccatgaggtg 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22943815 actttggactggccagagcctttggagtccctgttcgtacatacacccatgaggtg 22943870
Score = 244 bits (123), Expect = 7e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 826 ggtgacccgccgggctctgttccctggagattctgagattgaccagctcttccggatctt 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22945885 ggtgacccgccgggctctgttccctggagattctgagattgaccagctcttccggatctt 22945944
Query: 886 tcggactcttgggaccccagatgaggtggtttggccaggagttacttccatgcctgatta 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22945945 tcggactcttgggaccccagatgaggtggtttggccaggagttacttccatgcctgatta 22946004
Query: 946 taa 948
|||
Sbjct: 22946005 taa 22946007
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 433 gttgctggatgtcattcacacagaaaacaaactctacctggtttttgagtttctgcacca 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22942342 gttgctggatgtcattcacacagaaaacaaactctacctggtttttgagtttctgcacca 22942401
Query: 493 ggatctcaagaaattcatggatgcctctgctctcactggcattcctcttcccctcataaa 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22942402 ggatctcaagaaattcatggatgcctctgctctcactggcattcctcttcccctcataaa 22942461
Query: 553 g 553
|
Sbjct: 22942462 g 22942462
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 723 aggtggtgactttgtggtacagagcacctgaaatccttctgggctgcaaatactactcta 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22944637 aggtggtgactttgtggtacagagcacctgaaatccttctgggctgcaaatactactcta 22944696
Query: 783 cagccgtggacatctggagcctgggctgcatctttgctgagatggt 828
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22944697 cagccgtggacatctggagcctgggctgcatctttgctgagatggt 22944742
Score = 159 bits (80), Expect = 3e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 355 tgagacggagggtgtacccagtactgccattcgagagatctctctgcttaaggagcttaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22942153 tgagacggagggtgtacccagtactgccattcgagagatctctctgcttaaggagcttaa 22942212
Query: 415 ccaccctaatattgtcaagt 434
||||||||||||||||||||
Sbjct: 22942213 ccaccctaatattgtcaagt 22942232
>gb|GL895424.2| Sus scrofa unplaced genomic scaffold ChrUScaf3308
Length = 25844
Score = 244 bits (123), Expect = 7e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 826 ggtgacccgccgggctctgttccctggagattctgagattgaccagctcttccggatctt 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12991 ggtgacccgccgggctctgttccctggagattctgagattgaccagctcttccggatctt 13050
Query: 886 tcggactcttgggaccccagatgaggtggtttggccaggagttacttccatgcctgatta 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13051 tcggactcttgggaccccagatgaggtggtttggccaggagttacttccatgcctgatta 13110
Query: 946 taa 948
|||
Sbjct: 13111 taa 13113
>Sscrofa_Chr12
|| Length = 63588571
Score = 69.9 bits (35), Expect = 2e-09
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 826 ggtgacccgccgggctctgttccctggagattctgagattgaccagctcttccggatctt 885
|||||||||| | || ||||| ||||| || |||||||||||||||||||| || |||||
Sbjct: 5384049 ggtgacccgcagagccctgtttcctggcgactctgagattgaccagctctttcgtatctt 5383990
Query: 886 tcggactcttgggac 900
|||||| || |||||
Sbjct: 5383989 tcggaccctggggac 5383975
Score = 60.0 bits (30), Expect = 2e-06
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 755 atccttctgggctgcaaatactactctacagccgtggacatctggagcctgggctgcatc 814
||||| ||||||||||| | |||||| || || ||||| |||||||| | |||||||||
Sbjct: 5384409 atcctcctgggctgcaagttctactcgacggctgtggatgtctggagcattggctgcatc 5384350
Query: 815 tttgctgagatggt 828
||||| ||||||||
Sbjct: 5384349 tttgcagagatggt 5384336
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,893,985
Number of extensions: 180
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 9
Length of query: 948
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 927
Effective length of database: 2,808,413,156
Effective search space: 2603398995612
Effective search space used: 2603398995612
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)