Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013313
(1135 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535049.2| PREDICTED: similar to budding uninhibited by be... 514 e-146
Alignment gi|XP_852616.1| PREDICTED: similar to BUB3 budding uninhibited ... 512 e-145
Alignment gi|XP_855137.1| PREDICTED: similar to BUB3 budding uninhibited ... 304 1e-82
Alignment gi|XP_543066.2| PREDICTED: similar to RAE1 RNA export 1 homolog... 195 8e-50
Alignment gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof... 71 2e-12
Alignment gi|XP_859995.1| PREDICTED: similar to WD repeat domain 51A isof... 65 9e-11
Alignment gi|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Can... 64 3e-10
Alignment gi|XP_535274.2| PREDICTED: similar to Src-associated protein SA... 56 6e-08
Alignment gi|NP_001003236.1| guanine nucleotide-binding protein G(I)/G(S)... 56 7e-08
Alignment gi|XP_545211.1| PREDICTED: similar to guanine nucleotide-bindin... 56 7e-08
>ref|XP_535049.2| PREDICTED: similar to budding uninhibited by benzimidazoles 3 homolog
isoform 1 [Canis familiaris].
Length = 246
Score = 514 bits (1324), Expect = e-146
Identities = 246/246 (100%), Positives = 246/246 (100%)
Frame = +2
Query: 326 MHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKV 505
MHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKV
Sbjct: 1 MHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKV 60
Query: 506 YTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIE 685
YTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIE
Sbjct: 61 YTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIE 120
Query: 686 GRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNI 865
GRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNI
Sbjct: 121 GRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNI 180
Query: 866 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAE 1045
WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAE
Sbjct: 181 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAE 240
Query: 1046 TKPKST 1063
TKPKST
Sbjct: 241 TKPKST 246
>ref|XP_852616.1| PREDICTED: similar to BUB3 budding uninhibited by benzimidazoles 3
isoform a isoform 3 [Canis familiaris].
Length = 248
Score = 512 bits (1319), Expect = e-145
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +2
Query: 326 MHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKV 505
MHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKV
Sbjct: 1 MHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKV 60
Query: 506 YTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIE 685
YTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIE
Sbjct: 61 YTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIE 120
Query: 686 GRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNI 865
GRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNI
Sbjct: 121 GRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNI 180
Query: 866 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAE 1045
WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAE
Sbjct: 181 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAE 240
Query: 1046 TKPKS 1060
TKPKS
Sbjct: 241 TKPKS 245
>ref|XP_855137.1| PREDICTED: similar to BUB3 budding uninhibited by benzimidazoles 3
isoform a [Canis familiaris].
Length = 292
Score = 304 bits (778), Expect = 1e-82
Identities = 155/189 (82%), Positives = 162/189 (85%)
Frame = +2
Query: 494 PEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVL 673
P L VS + V VLVWDLRNMG VQQ RES LKYQTRCIRAFPNKQGYVL
Sbjct: 102 PNTSQFLLVSSWDISVRLYDAAVLVWDLRNMGNVQQCRESRLKYQTRCIRAFPNKQGYVL 161
Query: 674 SSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDG 853
SSI+GRVA EYLDPSPE QKK +AFKCHRLK N+IEQIYPVNAISFHNIH+ FATGGSDG
Sbjct: 162 SSIKGRVAFEYLDPSPEEQKK-HAFKCHRLKGNSIEQIYPVNAISFHNIHDMFATGGSDG 220
Query: 854 FVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQV 1033
VNIWDPFNKKRLCQF++YPTSIASLAFSNDGTTLAIASSYMYEMDD EHPEDGIFI QV
Sbjct: 221 SVNIWDPFNKKRLCQFYQYPTSIASLAFSNDGTTLAIASSYMYEMDDMEHPEDGIFICQV 280
Query: 1034 TDAETKPKS 1060
TDAETKPKS
Sbjct: 281 TDAETKPKS 289
Score = 63.9 bits (154), Expect = 3e-10
Identities = 55/167 (32%), Positives = 69/167 (41%), Gaps = 31/167 (18%)
Frame = +2
Query: 122 PEDGISSVKFSPNTSQFLLVSSWDTSVRLYDV--------------PANSMRLKYQ---- 247
P ISSVKFSPNTSQFLLVSSWD SVRLYD RLKYQ
Sbjct: 91 PGRSISSVKFSPNTSQFLLVSSWDISVRLYDAAVLVWDLRNMGNVQQCRESRLKYQTRCI 150
Query: 248 -----HTGAVLDC-------AFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCV 391
G VL + DP+ H K H L + + P+ +
Sbjct: 151 RAFPNKQGYVLSSIKGRVAFEYLDPSP--EEQKKHAFKCHRLKGNSIEQI----YPVNAI 204
Query: 392 EYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQ-PEKVYTLSVSGD 529
+ ++ TG D +V +WDP F Q P + +L+ S D
Sbjct: 205 SFHNIHDMFATGGSDGSVNIWDPFNKKRLCQFYQYPTSIASLAFSND 251
>ref|XP_543066.2| PREDICTED: similar to RAE1 RNA export 1 homolog [Canis familiaris].
Length = 368
Score = 195 bits (495), Expect = 8e-50
Identities = 117/338 (34%), Positives = 177/338 (52%), Gaps = 18/338 (5%)
Frame = +2
Query: 101 EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 265
+ ++ P+D I + FSP T FL+ SW VR ++V + + + HTG VL
Sbjct: 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 90
Query: 266 D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 436
D C D + ++ D KM DLN++Q + HDAP++ + + P + ++TGSWD
Sbjct: 91 DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 150
Query: 437 QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 616
+T+K WD R+ PE+ Y V +V TA R ++V+ L N +R ES
Sbjct: 151 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 210
Query: 617 LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 778
LK+Q RC+ F +KQ G+ L SIEGRVA+ Y++P P K + FKCHR N
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTSA 269
Query: 779 -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTT 955
+ IY VN I+FH +H T AT GSDG + WD + +L + I++ F+++G
Sbjct: 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329
Query: 956 LAIASSYMYEMDD---TEHPEDGIFIRQVTDAETKPKS 1060
A ASSY + ++ IF+R + E KP++
Sbjct: 330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRN 366
>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
familiaris].
Length = 406
Score = 70.9 bits (172), Expect = 2e-12
Identities = 70/288 (24%), Positives = 113/288 (39%), Gaps = 6/288 (2%)
Frame = +2
Query: 128 DGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAW--S 301
D I+SV FS NT Q L S D+ + ++ + S ++ + C + P+ S
Sbjct: 20 DAITSVDFSLNTKQ-LASGSMDSCLMVWHMKPQSRAYRFAGHKDAVTCVNFSPSGHLLAS 78
Query: 302 GGLDHQLKMHDLNTDQENLV-GTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNA 478
G D +++ N E+ V H A +R V +C + +VT S D+TVK+W
Sbjct: 79 GSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQKFL 138
Query: 479 GTFSQP---EKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAF 649
+ SQ + S G ++ + + V +WD K C+ ++
Sbjct: 139 FSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWD---------------KTSRECVHSY 183
Query: 650 PNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNT 829
G+V S + K + + HRL ++ VNA+SFH N
Sbjct: 184 CEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNY 243
Query: 830 FATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 973
T SD + I D + L H + ++AFS G A S
Sbjct: 244 LLTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291
>ref|XP_859995.1| PREDICTED: similar to WD repeat domain 51A isoform 2 [Canis
familiaris].
Length = 388
Score = 65.5 bits (158), Expect = 9e-11
Identities = 70/288 (24%), Positives = 111/288 (38%), Gaps = 6/288 (2%)
Frame = +2
Query: 128 DGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAW--S 301
D I+SV FS NT Q L S D+ + ++ + S ++ + C + P+ S
Sbjct: 20 DAITSVDFSLNTKQ-LASGSMDSCLMVWHMKPQSRAYRFAGHKDAVTCVNFSPSGHLLAS 78
Query: 302 GGLDHQLKMHDLNTDQENLV-GTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNA 478
G D +++ N E+ V H A +R V +C + +VT S D+TVK+W
Sbjct: 79 GSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQKFL 138
Query: 479 GTFSQP---EKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAF 649
+ SQ + S G ++ + + V +WD K C+ ++
Sbjct: 139 FSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWD---------------KTSRECVHSY 183
Query: 650 PNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNT 829
G+V Y+D P + C N+ VNA+SFH N
Sbjct: 184 CEHGGFVT----------YVDFHP-------SGTCISSSGVNVHSA-AVNALSFHPSGNY 225
Query: 830 FATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 973
T SD + I D + L H + ++AFS G A S
Sbjct: 226 LLTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 273
>ref|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Canis familiaris].
Length = 358
Score = 63.9 bits (154), Expect = 3e-10
Identities = 77/295 (26%), Positives = 128/295 (43%), Gaps = 12/295 (4%)
Frame = +2
Query: 125 EDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPA---NSMRLKYQHTGAVLDCAFY-DPTH 292
E + KF PN S L + +D + L++V N LK H+GAV++ + D +
Sbjct: 67 EGEVYCCKFHPNGST-LASAGFDRLILLWNVYGDCDNYATLK-GHSGAVMELHYNTDGSM 124
Query: 293 AWSGGLDHQLKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 466
+S D + + D T + + L G C ++ TGS D TVKLWD R
Sbjct: 125 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 184
Query: 467 PCNAGTFSQPEKVY--TLSVSGDRLIVGTAGRRVLVWDLRN--MGYVQQRRESSLKYQTR 634
TF +V T + + D++I G + VWDLR + Y + S+ +
Sbjct: 185 KAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLS- 243
Query: 635 CIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI--S 808
++ Y+LS+ V D P K++ C ++ + N+ + N + S
Sbjct: 244 ----LSSEGSYLLSNAMDNT-VRVWDVRPFAPKER----CVKIFQGNVHN-FEKNLLRCS 293
Query: 809 FHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 973
+ + A G +D FV +WD +++ L + + SI +AF D + ASS
Sbjct: 294 WSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASS 348
Score = 50.1 bits (118), Expect = 4e-06
Identities = 43/205 (20%), Positives = 82/205 (40%), Gaps = 4/205 (1%)
Frame = +2
Query: 356 LVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCN--AGTFSQPEKVYTL--SVS 523
L+ H+ + C ++ P + + + +D+ + LW+ C+ A V L +
Sbjct: 62 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD 121
Query: 524 GDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVE 703
G L + + V VWD G +R + + C A Q S +G V +
Sbjct: 122 GSMLFSASTDKTVAVWDSET-GERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180
Query: 704 YLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNK 883
+ +KK A + + Y V A++F++ + +GG D + +WD
Sbjct: 181 DI-------RKKAAIQ-------TFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 226
Query: 884 KRLCQFHRYPTSIASLAFSNDGTTL 958
K + S+ L+ S++G+ L
Sbjct: 227 KLTYTMRGHADSVTGLSLSSEGSYL 251
>ref|XP_535274.2| PREDICTED: similar to Src-associated protein SAW [Canis
familiaris].
Length = 488
Score = 56.2 bits (134), Expect = 6e-08
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 9/187 (4%)
Frame = +2
Query: 167 QFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFY-DPTHAWSGGLDHQLKMHDLN 340
+ L+ S D V+L+D+ + +++ HT AV F D H SG D+ +K+ D+
Sbjct: 93 KLLVAGSEDGGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIP 152
Query: 341 TDQENLV-GTHDAPIRCVEYCPEVN--VMVTGSWDQTVKLWDPRTPCNAGTFS----QPE 499
+E + H +RC ++N + VTGS+D TVK++D RT N S QP
Sbjct: 153 NSKEIVTFKEHSDYVRC-GCASKLNPDLFVTGSYDHTVKMFDART--NQSVISVEHGQPV 209
Query: 500 KVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSS 679
+ L SG L+ GR V +WD+ G + ++ K T C+ + Q + S
Sbjct: 210 ESVLLFPSGG-LLASAGGRYVKIWDMLKGGQLLVSLKNHHKTVT-CLYLSSSGQRLLSGS 267
Query: 680 IEGRVAV 700
++ +V V
Sbjct: 268 LDRKVKV 274
>ref|NP_001003236.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
[Canis lupus familiaris].
Length = 340
Score = 55.8 bits (133), Expect = 7e-08
Identities = 70/283 (24%), Positives = 116/283 (40%), Gaps = 14/283 (4%)
Frame = +2
Query: 164 SQFLLVSSWDTSVRLYD-VPANSMRLKYQHTGAVLDCAFYDPT--HAWSGGLDHQLKMHD 334
S+ L+ +S D + ++D N + + V+ CA Y P+ + GGLD+ +++
Sbjct: 67 SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYN 125
Query: 335 LNTDQENL-----VGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFS-QP 496
L T + N+ + H + C + + N +VT S D T LWD T TF+
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 497 EKVYTLSVSGD-RLIV-GTAGRRVLVWDLRNMGYVQQR---RESSLKYQTRCIRAFPNKQ 661
V +LS++ D RL V G +WD+R G +Q ES + I FPN
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDIN----AICFFPNGN 239
Query: 662 GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATG 841
+ S + + L E+ + +NI I + ++SF G
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSH---------DNI--ICGITSVSFSKSGRLLLAG 288
Query: 842 GSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIAS 970
D N+WD R + ++ L ++DG +A S
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Score = 49.3 bits (116), Expect = 7e-06
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Frame = +2
Query: 125 EDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSG 304
E I+++ F PN + F S D + RL+D+ A+ + Y H + C + + SG
Sbjct: 226 ESDINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTYSHDNII--CGITSVSFSKSG 282
Query: 305 GL------DHQLKMHD-LNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 457
L D + D L D+ ++ HD + C+ + + TGSWD +K+W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>ref|XP_545211.1| PREDICTED: similar to guanine nucleotide-binding protein, beta-4
subunit [Canis familiaris].
Length = 340
Score = 55.8 bits (133), Expect = 7e-08
Identities = 65/280 (23%), Positives = 114/280 (40%), Gaps = 11/280 (3%)
Frame = +2
Query: 164 SQFLLVSSWDTSVRLYD-VPANSMRLKYQHTGAVLDCAFYDPT--HAWSGGLDHQLKMHD 334
S+ L+ +S D + ++D N M + V+ CA Y P+ + GGLD+ +++
Sbjct: 67 SRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYN 125
Query: 335 LNTDQENLVGTHDAP-----IRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFS-QP 496
L T + N+ + + P + C + + + VT S D T LWD T TF+
Sbjct: 126 LKTREGNVRVSRELPGHTGYLSCCRFLDDSQI-VTSSGDTTCALWDIETAQQTTTFTGHS 184
Query: 497 EKVYTLSVSGDR--LIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYV 670
V +LS+S D + G +WD+R+ G +Q + + FPN GY
Sbjct: 185 GDVMSLSLSPDMRTFVSGACDASSKLWDIRD-GMCRQSFTGHVS-DINAVSFFPN--GYA 240
Query: 671 LSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSD 850
++ D + + Y+ +NI I + +++F G D
Sbjct: 241 FATGSDDATCRLFDLRADQELLLYS-------HDNI--ICGITSVAFSKSGRLLLAGYDD 291
Query: 851 GFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIAS 970
N+WD R + ++ L ++DG +A S
Sbjct: 292 FNCNVWDTLKGDRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,409,750
Number of extensions: 1385888
Number of successful extensions: 5760
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 5464
Number of HSP's successfully gapped: 44
Length of query: 378
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 274
Effective length of database: 15,407,560
Effective search space: 4221671440
Effective search space used: 4221671440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013313
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013313
(1135 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069645.1| mitotic checkpoint protein BUB3 [Bos taurus]. 681 0.0
Alignment gi|NP_001015585.1| mRNA export factor [Bos taurus]. 195 5e-50
Alignment gi|NP_001033649.1| POC1 centriolar protein homolog A [Bos tauru... 68 2e-11
Alignment gi|NP_001039847.1| U5 small nuclear ribonucleoprotein 40 kDa pr... 65 1e-10
Alignment gi|XP_002685607.1| PREDICTED: sperm associated antigen 16 [Bos ... 65 1e-10
Alignment gi|NP_001094598.1| U3 small nucleolar RNA-associated protein 15... 60 5e-09
Alignment gi|NP_786971.2| guanine nucleotide-binding protein G(I)/G(S)/G(... 56 7e-08
Alignment gi|NP_001095379.1| katanin p80 WD40-containing subunit B1 [Bos ... 55 9e-08
Alignment gi|XP_002700435.1| PREDICTED: TAF5-like RNA polymerase II, p300... 54 2e-07
Alignment gi|XP_603152.3| PREDICTED: PCAF associated factor 65 beta [Bos ... 54 2e-07
>ref|NP_001069645.1| mitotic checkpoint protein BUB3 [Bos taurus].
Length = 326
Score = 681 bits (1756), Expect = 0.0
Identities = 326/326 (100%), Positives = 326/326 (100%)
Frame = +2
Query: 86 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 265
MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
Sbjct: 1 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 60
Query: 266 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 445
DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
Sbjct: 61 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 120
Query: 446 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 625
KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
Sbjct: 121 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 180
Query: 626 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 805
QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
Sbjct: 181 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 240
Query: 806 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 985
SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
Sbjct: 241 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 300
Query: 986 MDDTEHPEDGIFIRQVTDAETKPKST 1063
MDDTEHPEDGIFIRQVTDAETKPKST
Sbjct: 301 MDDTEHPEDGIFIRQVTDAETKPKST 326
>ref|NP_001015585.1| mRNA export factor [Bos taurus].
Length = 368
Score = 195 bits (496), Expect = 5e-50
Identities = 118/338 (34%), Positives = 177/338 (52%), Gaps = 18/338 (5%)
Frame = +2
Query: 101 EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 265
+ ++ P+D I + FSP T FL+ SW VR ++V + + + HTG VL
Sbjct: 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 90
Query: 266 D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 436
D C D + ++ D KM DLN++Q + HDAP++ V + P + ++TGSWD
Sbjct: 91 DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTVHWIKAPNYSCVMTGSWD 150
Query: 437 QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 616
+T+K WD R+ PE+ Y V +V TA R ++V+ L N +R ES
Sbjct: 151 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 210
Query: 617 LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 778
LK+Q RC+ F +KQ G+ L SIEGRVA+ Y++P P K + FKCHR N
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTSA 269
Query: 779 -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTT 955
+ IY VN I+FH +H T AT GSDG + WD + +L + I++ F+++G
Sbjct: 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329
Query: 956 LAIASSYMYEMDD---TEHPEDGIFIRQVTDAETKPKS 1060
A ASSY + ++ IF+R + E KP++
Sbjct: 330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRN 366
>ref|NP_001033649.1| POC1 centriolar protein homolog A [Bos taurus].
Length = 407
Score = 67.8 bits (164), Expect = 2e-11
Identities = 70/298 (23%), Positives = 115/298 (38%), Gaps = 16/298 (5%)
Frame = +2
Query: 128 DGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAW--S 301
D ++SV FS NT Q L S D+ + ++ + + ++ + C + P+ S
Sbjct: 20 DAVTSVDFSLNTKQ-LASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSPSGHLLAS 78
Query: 302 GGLDHQLKMHDLNTDQENLV-GTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNA 478
G D +++ N E+ V H A +R V +C + VT S D+TVK+W
Sbjct: 79 GSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKFL 138
Query: 479 GTFSQP---EKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAF 649
+ SQ + S G ++ + + V +WD K C+ ++
Sbjct: 139 FSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD---------------KTSRECVHSY 183
Query: 650 PNKQGYVLSSIEGRVAVEYLDPSP----------EVQKKKYAFKCHRLKENNIEQIYPVN 799
G+V Y+D P + K + + HRL ++ VN
Sbjct: 184 CEHGGFVT----------YVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVN 233
Query: 800 AISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 973
A+SFH N T SD + I D + L H + ++AFS G A S
Sbjct: 234 ALSFHPSGNYLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291
>ref|NP_001039847.1| U5 small nuclear ribonucleoprotein 40 kDa protein [Bos taurus].
Length = 358
Score = 65.1 bits (157), Expect = 1e-10
Identities = 78/295 (26%), Positives = 128/295 (43%), Gaps = 12/295 (4%)
Frame = +2
Query: 125 EDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPA---NSMRLKYQHTGAVLDCAFY-DPTH 292
E + KF PN S L + +D + L++V N LK H+GAV++ + D +
Sbjct: 67 EGEVYCCKFHPNGST-LASAGFDRLILLWNVYGDCDNYATLK-GHSGAVMELHYNTDGSM 124
Query: 293 AWSGGLDHQLKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 466
+S D + + D T + + L G C ++ TGS D TVKLWD R
Sbjct: 125 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 184
Query: 467 PCNAGTFSQPEKVY--TLSVSGDRLIVGTAGRRVLVWDLRN--MGYVQQRRESSLKYQTR 634
TF +V T + + D++I G + VWDLR + Y + S+ +
Sbjct: 185 KAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLS- 243
Query: 635 CIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI--S 808
++ Y+LS+ V D P K++ C R+ + N+ + N + S
Sbjct: 244 ----LSSEGSYLLSNAMDNT-VRVWDVRPFAPKER----CVRIFQGNVHN-FEKNLLRCS 293
Query: 809 FHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 973
+ + A G +D FV +WD +++ L + + SI +AF D + ASS
Sbjct: 294 WSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASS 348
Score = 50.1 bits (118), Expect = 4e-06
Identities = 43/205 (20%), Positives = 82/205 (40%), Gaps = 4/205 (1%)
Frame = +2
Query: 356 LVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCN--AGTFSQPEKVYTL--SVS 523
L+ H+ + C ++ P + + + +D+ + LW+ C+ A V L +
Sbjct: 62 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD 121
Query: 524 GDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVE 703
G L + + V VWD G +R + + C A Q S +G V +
Sbjct: 122 GSMLFSASTDKTVAVWDSET-GERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180
Query: 704 YLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNK 883
+ +KK A + + Y V A++F++ + +GG D + +WD
Sbjct: 181 DI-------RKKAAIQ-------TFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 226
Query: 884 KRLCQFHRYPTSIASLAFSNDGTTL 958
K + S+ L+ S++G+ L
Sbjct: 227 KLTYTMRGHADSVTGLSLSSEGSYL 251
>ref|XP_002685607.1| PREDICTED: sperm associated antigen 16 [Bos taurus].
Length = 628
Score = 64.7 bits (156), Expect = 1e-10
Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 13/260 (5%)
Frame = +2
Query: 128 DGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFYD-PTHAWS 301
D +S+ F P+ ++ L SS DT+V+L+DV + L ++ HT AV C ++ S
Sbjct: 392 DWLSNCCFHPSGNK-LATSSGDTTVKLWDVSKGNCILTFEGHTHAVWSCTWHSCGDFVAS 450
Query: 302 GGLDHQLKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT-PC 472
LD K+ D+N+++ L G H + +E+ P N ++TGS D+++ +WD RT C
Sbjct: 451 SSLDTTSKIWDVNSERCRYTLYG-HTDSVNSIEFFPYSNTLLTGSADKSLSIWDARTGKC 509
Query: 473 NAGTFSQPEKV--YTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRA 646
+ + T + G + A +WD R + L + +
Sbjct: 510 EQSLYGHMHSINDATFTPRGHMIASCDACGVTKLWDFRKL----------LPMVSIDVGP 559
Query: 647 FPNKQ------GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAIS 808
P + G VL+ G + LD + + H+L + E + +
Sbjct: 560 SPGNEVTFDSSGRVLAQASGNGVIHLLDLK--------SGQIHKLMGHESE----AHTVI 607
Query: 809 FHNIHNTFATGGSDGFVNIW 868
F T +GGSDG + W
Sbjct: 608 FSRDGETLFSGGSDGTIRTW 627
>ref|NP_001094598.1| U3 small nucleolar RNA-associated protein 15 homolog [Bos taurus].
Length = 519
Score = 59.7 bits (143), Expect = 5e-09
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 10/188 (5%)
Frame = +2
Query: 167 QFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFY-DPTHAWSGGLDHQLKMHDLN 340
+ L+ S D V+L+D+ + +++ HT AV F D H SG D+ +K+ D+
Sbjct: 93 RLLVAGSEDGGVQLFDISGRAPLRQFEGHTKAVHSVDFTADKYHVVSGADDYTVKLWDIP 152
Query: 341 TDQENLV-GTHDAPIRCVEYCPE---VNVMVTGSWDQTVKLWDPRTPCNAGTFS----QP 496
+E L H +RC C ++ VTGS+D TVK++D RT N S QP
Sbjct: 153 NSKEILTFKEHSDYVRCG--CASKLNTDLFVTGSYDHTVKMFDART--NQSVISVEHGQP 208
Query: 497 EKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLS 676
+ L SG L+V GR V VWD+ G + ++ K T C+ + Q +
Sbjct: 209 VESVLLFPSGG-LLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTVT-CLCLSSSGQRLLSG 266
Query: 677 SIEGRVAV 700
S++ +V V
Sbjct: 267 SLDRKVKV 274
>ref|NP_786971.2| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
[Bos taurus].
Length = 340
Score = 55.8 bits (133), Expect = 7e-08
Identities = 70/283 (24%), Positives = 116/283 (40%), Gaps = 14/283 (4%)
Frame = +2
Query: 164 SQFLLVSSWDTSVRLYD-VPANSMRLKYQHTGAVLDCAFYDPT--HAWSGGLDHQLKMHD 334
S+ L+ +S D + ++D N + + V+ CA Y P+ + GGLD+ +++
Sbjct: 67 SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYN 125
Query: 335 LNTDQENL-----VGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFS-QP 496
L T + N+ + H + C + + N +VT S D T LWD T TF+
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 497 EKVYTLSVSGD-RLIV-GTAGRRVLVWDLRNMGYVQQR---RESSLKYQTRCIRAFPNKQ 661
V +LS++ D RL V G +WD+R G +Q ES + I FPN
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDIN----AICFFPNGN 239
Query: 662 GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATG 841
+ S + + L E+ + +NI I + ++SF G
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSH---------DNI--ICGITSVSFSKSGRLLLAG 288
Query: 842 GSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIAS 970
D N+WD R + ++ L ++DG +A S
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Score = 49.3 bits (116), Expect = 6e-06
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Frame = +2
Query: 125 EDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSG 304
E I+++ F PN + F S D + RL+D+ A+ + Y H + C + + SG
Sbjct: 226 ESDINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTYSHDNII--CGITSVSFSKSG 282
Query: 305 GL------DHQLKMHD-LNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 457
L D + D L D+ ++ HD + C+ + + TGSWD +K+W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>ref|NP_001095379.1| katanin p80 WD40-containing subunit B1 [Bos taurus].
Length = 663
Score = 55.5 bits (132), Expect = 9e-08
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Frame = +2
Query: 134 ISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAW--SGG 307
I S+ F P +F+ S DT+++L+D+ +Y+ + C + P W S
Sbjct: 108 ICSLDFHPY-GEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAA 166
Query: 308 LDHQLKMHDLNTDQE-NLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 457
DH +K+ DL + + H P+ VE+ P ++ +GS D+T++ WD
Sbjct: 167 DDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD 217
Score = 48.9 bits (115), Expect = 8e-06
Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 6/226 (2%)
Frame = +2
Query: 299 SGGLDHQLKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPC 472
+GG D ++ + +N +L G H +P+ V ++V GS ++++WD
Sbjct: 38 TGGDDCRVNLWSINKPNCIMSLTG-HTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAK 96
Query: 473 NAGTFSQPEKVYTLSVS----GDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 640
T K S+ G+ + G+ + +WD+R G V + R S RC+
Sbjct: 97 ILRTL-MGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHS--QAVRCL 153
Query: 641 RAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNI 820
R P+ G L+S V+ D + K F H PVN + FH
Sbjct: 154 RFSPD--GKWLASAADDHTVKLWDLT--AGKMMSEFPGHT---------GPVNVVEFHPN 200
Query: 821 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTL 958
A+G SD + WD + + P + S+ F+ DG L
Sbjct: 201 EYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSILFNPDGCCL 246
>ref|XP_002700435.1| PREDICTED: TAF5-like RNA polymerase II, p300/CBP-associated factor
(PCAF)-associated factor, 65kDa [Bos taurus].
Length = 600
Score = 54.3 bits (129), Expect = 2e-07
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Frame = +2
Query: 134 ISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFYDPTHAW-SGG 307
+ S +F P++S LL S DTS+R +D+ + + + YQ H V D + + S
Sbjct: 356 VYSTRFLPDSSA-LLSCSEDTSIRYWDLESFTNTVLYQGHAYPVWDLDISPHSLFFASAS 414
Query: 308 LDHQLKMHDLN-TDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGT 484
DH ++ + T + H A + CV++ P N + TGS D+TV+LW + +
Sbjct: 415 YDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRL 474
Query: 485 FS---QPEKVYTLSVSGDRLIVGTAGRRVLVWDL 577
F+ P + S +G L+ + + +WDL
Sbjct: 475 FTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDL 508
>ref|XP_603152.3| PREDICTED: PCAF associated factor 65 beta [Bos taurus].
Length = 600
Score = 54.3 bits (129), Expect = 2e-07
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Frame = +2
Query: 134 ISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFYDPTHAW-SGG 307
+ S +F P++S LL S DTS+R +D+ + + + YQ H V D + + S
Sbjct: 356 VYSTRFLPDSSA-LLSCSEDTSIRYWDLESFTNTVLYQGHAYPVWDLDISPHSLFFASAS 414
Query: 308 LDHQLKMHDLN-TDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGT 484
DH ++ + T + H A + CV++ P N + TGS D+TV+LW + +
Sbjct: 415 YDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRL 474
Query: 485 FS---QPEKVYTLSVSGDRLIVGTAGRRVLVWDL 577
F+ P + S +G L+ + + +WDL
Sbjct: 475 FTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDL 508
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,606,304
Number of extensions: 1384579
Number of successful extensions: 5380
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 5173
Number of HSP's successfully gapped: 30
Length of query: 378
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,240,222
Effective search space: 3901820828
Effective search space used: 3901820828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013313
(1135 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928080.1| PREDICTED: mitotic checkpoint protein BUB3 i... 681 0.0
Alignment gi|XP_003359438.1| PREDICTED: mitotic checkpoint protein BUB3 [... 679 0.0
Alignment gi|NP_001098766.1| mRNA export factor [Sus scrofa]. 195 4e-50
Alignment gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A... 64 2e-10
Alignment gi|XP_003356314.1| PREDICTED: u5 small nuclear ribonucleoprotei... 64 2e-10
Alignment gi|NP_001230134.1| U3 small nucleolar RNA-associated protein 15... 59 5e-09
Alignment gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l... 53 3e-07
Alignment gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l... 53 3e-07
Alignment gi|XP_001924765.1| PREDICTED: guanine nucleotide-binding protei... 53 3e-07
Alignment gi|XP_003354523.1| PREDICTED: guanine nucleotide-binding protei... 52 5e-07
>ref|XP_001928080.1| PREDICTED: mitotic checkpoint protein BUB3 isoform 2 [Sus scrofa].
Length = 326
Score = 681 bits (1756), Expect = 0.0
Identities = 326/326 (100%), Positives = 326/326 (100%)
Frame = +2
Query: 86 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 265
MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
Sbjct: 1 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 60
Query: 266 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 445
DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
Sbjct: 61 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 120
Query: 446 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 625
KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
Sbjct: 121 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 180
Query: 626 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 805
QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
Sbjct: 181 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 240
Query: 806 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 985
SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
Sbjct: 241 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 300
Query: 986 MDDTEHPEDGIFIRQVTDAETKPKST 1063
MDDTEHPEDGIFIRQVTDAETKPKST
Sbjct: 301 MDDTEHPEDGIFIRQVTDAETKPKST 326
>ref|XP_003359438.1| PREDICTED: mitotic checkpoint protein BUB3 [Sus scrofa].
Length = 328
Score = 679 bits (1751), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Frame = +2
Query: 86 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 265
MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
Sbjct: 1 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 60
Query: 266 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 445
DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
Sbjct: 61 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 120
Query: 446 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 625
KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
Sbjct: 121 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 180
Query: 626 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 805
QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
Sbjct: 181 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 240
Query: 806 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 985
SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
Sbjct: 241 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 300
Query: 986 MDDTEHPEDGIFIRQVTDAETKPKS 1060
MDDTEHPEDGIFIRQVTDAETKPKS
Sbjct: 301 MDDTEHPEDGIFIRQVTDAETKPKS 325
>ref|NP_001098766.1| mRNA export factor [Sus scrofa].
Length = 368
Score = 195 bits (495), Expect = 4e-50
Identities = 117/338 (34%), Positives = 177/338 (52%), Gaps = 18/338 (5%)
Frame = +2
Query: 101 EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 265
+ ++ P+D I + FSP T FL+ SW VR ++V + + + HTG VL
Sbjct: 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 90
Query: 266 D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 436
D C D + ++ D KM DLN++Q + HDAP++ + + P + ++TGSWD
Sbjct: 91 DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 150
Query: 437 QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 616
+T+K WD R+ PE+ Y V +V TA R ++V+ L N +R ES
Sbjct: 151 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 210
Query: 617 LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 778
LK+Q RC+ F +KQ G+ L SIEGRVA+ Y++P P K + FKCHR N
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTSA 269
Query: 779 -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTT 955
+ IY VN I+FH +H T AT GSDG + WD + +L + I++ F+++G
Sbjct: 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329
Query: 956 LAIASSYMYEMDD---TEHPEDGIFIRQVTDAETKPKS 1060
A ASSY + ++ IF+R + E KP++
Sbjct: 330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRN 366
>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
Length = 344
Score = 63.9 bits (154), Expect = 2e-10
Identities = 68/292 (23%), Positives = 114/292 (39%), Gaps = 10/292 (3%)
Frame = +2
Query: 128 DGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAW--S 301
D ++ V FS N Q L S D+ + ++ + S ++ + C + P+ S
Sbjct: 20 DAVTCVDFSFNMKQ-LASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLAS 78
Query: 302 GGLDHQLKMHDLNTDQENLV-GTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNA 478
G D +++ N E+ V H A +R V +C + VT S D+T+K+W
Sbjct: 79 GSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTIKVWSTHRQKFL 138
Query: 479 GTFSQP---EKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAF 649
+ SQ + S G ++ + + V +WD K C+ ++
Sbjct: 139 FSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD---------------KTSRECVHSY 183
Query: 650 PNKQGYV----LSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHN 817
G+V VA +D + +V + + HRL ++ VNA+SFH
Sbjct: 184 CEHGGFVTYVDFHPSGTCVAAAGMDNTVKV----WDVRTHRLLQHYQLHSAAVNALSFHP 239
Query: 818 IHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 973
N T SD + I D + L H + ++AFS G A S
Sbjct: 240 SGNYLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291
>ref|XP_003356314.1| PREDICTED: u5 small nuclear ribonucleoprotein 40 kDa protein-like
[Sus scrofa].
Length = 358
Score = 63.9 bits (154), Expect = 2e-10
Identities = 77/295 (26%), Positives = 128/295 (43%), Gaps = 12/295 (4%)
Frame = +2
Query: 125 EDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPA---NSMRLKYQHTGAVLDCAFY-DPTH 292
E + KF PN S L + +D + L++V N LK H+GAV++ + D +
Sbjct: 67 EGEVYCCKFHPNGST-LASAGFDRLILLWNVYGDCDNYATLK-GHSGAVMELHYNTDGSM 124
Query: 293 AWSGGLDHQLKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 466
+S D + + D T + + L G C ++ TGS D TVKLWD R
Sbjct: 125 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 184
Query: 467 PCNAGTFSQPEKVY--TLSVSGDRLIVGTAGRRVLVWDLRN--MGYVQQRRESSLKYQTR 634
TF +V T + + D++I G + VWDLR + Y + S+ +
Sbjct: 185 KAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLS- 243
Query: 635 CIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI--S 808
++ Y+LS+ V D P K++ C ++ + N+ + N + S
Sbjct: 244 ----LSSEGSYLLSNAMDNT-VRVWDVRPFAPKER----CVKIFQGNVHN-FEKNLLRCS 293
Query: 809 FHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 973
+ + A G +D FV +WD +++ L + + SI +AF D + ASS
Sbjct: 294 WSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASS 348
Score = 50.1 bits (118), Expect = 2e-06
Identities = 43/205 (20%), Positives = 82/205 (40%), Gaps = 4/205 (1%)
Frame = +2
Query: 356 LVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCN--AGTFSQPEKVYTL--SVS 523
L+ H+ + C ++ P + + + +D+ + LW+ C+ A V L +
Sbjct: 62 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD 121
Query: 524 GDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVE 703
G L + + V VWD G +R + + C A Q S +G V +
Sbjct: 122 GSMLFSASTDKTVAVWDSET-GERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180
Query: 704 YLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNK 883
+ +KK A + + Y V A++F++ + +GG D + +WD
Sbjct: 181 DI-------RKKAAIQ-------TFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 226
Query: 884 KRLCQFHRYPTSIASLAFSNDGTTL 958
K + S+ L+ S++G+ L
Sbjct: 227 KLTYTMRGHADSVTGLSLSSEGSYL 251
>ref|NP_001230134.1| U3 small nucleolar RNA-associated protein 15 homolog [Sus scrofa].
Length = 518
Score = 58.9 bits (141), Expect = 5e-09
Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Frame = +2
Query: 167 QFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFY-DPTHAWSGGLDHQLKMHDLN 340
+ L+ S D V+L+D+ + +++ HT AV F D H SG D+ +K+ D+
Sbjct: 93 RLLIAGSEDGGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIP 152
Query: 341 TDQENLV-GTHDAPIRCVEYCPEVN--VMVTGSWDQTVKLWDPRTPCNAGTFS----QPE 499
+E L H +RC ++N + VTGS+D TVK++D RT N S QP
Sbjct: 153 NSKEILTFKEHSDYVRC-GCASKLNPDLFVTGSYDHTVKMFDART--NQSVISVEHGQPV 209
Query: 500 KVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSS 679
+ L SG L+V GR V VWD+ G + ++ K T C+ + Q + S
Sbjct: 210 ESVLLFPSGG-LLVSAGGRYVKVWDVLKGGQLLVSLKNHHKTVT-CLCLSSSGQRLLSGS 267
Query: 680 IEGRVAV 700
++ +V V
Sbjct: 268 LDRKVKV 274
>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 53.1 bits (126), Expect = 3e-07
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Frame = +2
Query: 146 KFSPNTSQFLLVSSWDTSVRLYDVP-ANSMRLKYQHTGAVLDCAFY-DPTHAWSGGLDHQ 319
+FSP+ F SS D ++RL+DV +++ H +V +F D SGG D +
Sbjct: 70 RFSPDGRLFASTSS-DCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKR 128
Query: 320 LKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPR 463
+ + ++ + Q +LVG D+ I+ ++ P + + TGSWD T+++WD R
Sbjct: 129 VMLWEVQSGQVLRHLVGHRDS-IQSSDFAPSSDCLATGSWDSTIRMWDLR 177
>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 53.1 bits (126), Expect = 3e-07
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Frame = +2
Query: 146 KFSPNTSQFLLVSSWDTSVRLYDVP-ANSMRLKYQHTGAVLDCAFY-DPTHAWSGGLDHQ 319
+FSP+ F SS D ++RL+DV +++ H +V +F D SGG D +
Sbjct: 70 RFSPDGRLFASTSS-DCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKR 128
Query: 320 LKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPR 463
+ + ++ + Q +LVG D+ I+ ++ P + + TGSWD T+++WD R
Sbjct: 129 VMLWEVQSGQVLRHLVGHRDS-IQSSDFAPSSDCLATGSWDSTIRMWDLR 177
>ref|XP_001924765.1| PREDICTED: guanine nucleotide-binding protein subunit beta-5-like
[Sus scrofa].
Length = 353
Score = 53.1 bits (126), Expect = 3e-07
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 10/158 (6%)
Frame = +2
Query: 134 ISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAW----S 301
+S+ F+ N+ +L +S D + L+DV + + + GA + C P+ S
Sbjct: 156 LSACSFT-NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 214
Query: 302 GGLDHQLKMHDLNTDQ-ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNA 478
GG D + + D+ + Q TH++ I V Y P + +GS D T +L+D R
Sbjct: 215 GGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREV 274
Query: 479 GTFSQPEKVY-----TLSVSGDRLIVGTAGRRVLVWDL 577
+S+ ++ S+SG L G + VWD+
Sbjct: 275 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 312
>ref|XP_003354523.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T)
subunit beta-2-like, partial [Sus scrofa].
Length = 308
Score = 52.4 bits (124), Expect = 5e-07
Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 13/282 (4%)
Frame = +2
Query: 164 SQFLLVSSWDTSVRLYD-VPANSMRLKYQHTGAVLDCAFYDPTHAW--SGGLDHQLKMHD 334
S+ L+ +S D + ++D N + + V+ CA Y P+ + GGLD+ ++
Sbjct: 35 SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNFVACGGLDNICSIYS 93
Query: 335 LNTDQENLVGTHDAP-----IRCVEYCPEVNVMVTGSWDQTVKLWDPRT-PCNAGTFSQP 496
L T + N+ + + P + C + + N ++T S D T LWD T G
Sbjct: 94 LKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIITSSGDTTCALWDIETGQQTVGFAGHS 152
Query: 497 EKVYTLSVSGD--RLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT--RCIRAFPNKQG 664
V +LS++ D + G + +WD+R+ R++ + +++ + FPN G
Sbjct: 153 GDVMSLSLAPDGRTFVSGACDASIKLWDVRD----SMCRQTFIGHESDINAVAFFPN--G 206
Query: 665 YVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGG 844
Y ++ D + + Y+ +NI I + +++F G
Sbjct: 207 YAFTTGSDDATCRLFDLRADQELLMYS-------HDNI--ICGITSVAFSRSGRLLLAGY 257
Query: 845 SDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIAS 970
D NIWD R + ++ L ++DG +A S
Sbjct: 258 DDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGS 299
Score = 48.1 bits (113), Expect = 9e-06
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Frame = +2
Query: 125 EDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSG 304
E I++V F PN F S D + RL+D+ A+ L Y H + C + SG
Sbjct: 194 ESDINAVAFFPNGYAFTTGSD-DATCRLFDLRADQELLMYSHDNII--CGITSVAFSRSG 250
Query: 305 GL------DHQLKMHD-LNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 457
L D + D + D+ ++ HD + C+ + + TGSWD +K+W+
Sbjct: 251 RLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 308
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,313,673
Number of extensions: 933546
Number of successful extensions: 3397
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 3258
Number of HSP's successfully gapped: 25
Length of query: 378
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 277
Effective length of database: 8,829,335
Effective search space: 2445725795
Effective search space used: 2445725795
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013313
(1135 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033904.2| mitotic checkpoint protein BUB3 [Mus musculus]. 681 0.0
Alignment gi|NP_780321.1| mRNA export factor [Mus musculus]. 196 3e-50
Alignment gi|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus]. 67 2e-11
Alignment gi|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus]. 65 7e-11
Alignment gi|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa prote... 64 2e-10
Alignment gi|NP_849249.1| U3 small nucleolar RNA-associated protein 15 ho... 60 4e-09
Alignment gi|NP_083436.2| sperm-associated antigen 16 protein isoform 1 [... 60 4e-09
Alignment gi|NP_080004.1| sperm-associated antigen 16 protein isoform 2 [... 60 4e-09
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 58 1e-08
Alignment gi|NP_001153489.1| guanine nucleotide-binding protein G(I)/G(S)... 56 6e-08
>ref|NP_033904.2| mitotic checkpoint protein BUB3 [Mus musculus].
Length = 326
Score = 681 bits (1756), Expect = 0.0
Identities = 326/326 (100%), Positives = 326/326 (100%)
Frame = +2
Query: 86 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 265
MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
Sbjct: 1 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 60
Query: 266 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 445
DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
Sbjct: 61 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 120
Query: 446 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 625
KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
Sbjct: 121 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 180
Query: 626 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 805
QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
Sbjct: 181 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 240
Query: 806 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 985
SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
Sbjct: 241 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 300
Query: 986 MDDTEHPEDGIFIRQVTDAETKPKST 1063
MDDTEHPEDGIFIRQVTDAETKPKST
Sbjct: 301 MDDTEHPEDGIFIRQVTDAETKPKST 326
>ref|NP_780321.1| mRNA export factor [Mus musculus].
Length = 368
Score = 196 bits (498), Expect = 3e-50
Identities = 118/338 (34%), Positives = 177/338 (52%), Gaps = 18/338 (5%)
Frame = +2
Query: 101 EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 265
+ ++ P+D I + FSP T FL+ SW VR ++V + + + HTG VL
Sbjct: 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 90
Query: 266 D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 436
D C D + ++ D KM DLN++Q + HDAP++ + + P + ++TGSWD
Sbjct: 91 DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 150
Query: 437 QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 616
+T+K WD R+ PE+ Y V +V TA R ++V+ L N +R ES
Sbjct: 151 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 210
Query: 617 LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 778
LK+Q RC+ F +KQ G+ L SIEGRVA+ Y++P P K + FKCHR N
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTSA 269
Query: 779 -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTT 955
+ IY VN I+FH +H T AT GSDG + WD + +L + IA+ F+++G
Sbjct: 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPIAACCFNHNGNI 329
Query: 956 LAIASSYMYEMDD---TEHPEDGIFIRQVTDAETKPKS 1060
A ASSY + ++ IF+R + E KP++
Sbjct: 330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRN 366
>ref|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus].
Length = 476
Score = 67.4 bits (163), Expect = 2e-11
Identities = 67/291 (23%), Positives = 121/291 (41%), Gaps = 16/291 (5%)
Frame = +2
Query: 134 ISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAW--SGG 307
I+S FSPN Q + +SWDT + L+ + ++ +Y V+ + P S
Sbjct: 21 ITSADFSPNCKQ-IATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASAS 79
Query: 308 LDHQLKMHDLNTD-QENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDP-RTPCNAG 481
D +++ L+ + + H AP+R V++ + ++VT S D+++K+W R
Sbjct: 80 RDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYS 139
Query: 482 TFSQPEKVYTLSVSGD-RLIVGTA-GRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPN 655
+ V S D RLIV + + + +WD N +C+ F +
Sbjct: 140 LYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNK---------------QCVNNFSD 184
Query: 656 KQGYVLSSIEGRVAVEYLDPSPE-----VQKKKYAFKCHRLKENNIEQIYPV-----NAI 805
G+ ++D +P +A K ++ N + Q Y V N +
Sbjct: 185 SVGFA----------NFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCL 234
Query: 806 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTL 958
SFH + N+ T SDG V + D + + + + +++FS DG L
Sbjct: 235 SFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGELL 285
>ref|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].
Length = 405
Score = 65.5 bits (158), Expect = 7e-11
Identities = 69/298 (23%), Positives = 115/298 (38%), Gaps = 16/298 (5%)
Frame = +2
Query: 128 DGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAW--S 301
D ++ V FS NT L S D+++ ++ + S ++ + C + P+ S
Sbjct: 20 DAVTCVDFSLNTKH-LASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLAS 78
Query: 302 GGLDHQLKMHDLNTDQENLV-GTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNA 478
G D +++ N E+ V H A +R V +C + +VT S D+TVK+W
Sbjct: 79 GSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQRFL 138
Query: 479 GTFSQP---EKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAF 649
+ +Q + S G ++ + + V +WD K CI ++
Sbjct: 139 FSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWD---------------KTSRECIHSY 183
Query: 650 PNKQGYVLSSIEGRVAVEYLDPSP----------EVQKKKYAFKCHRLKENNIEQIYPVN 799
G+V Y+D P + K + + HRL ++ VN
Sbjct: 184 CEHGGFVT----------YVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVN 233
Query: 800 AISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 973
A+SFH N T SD + I D + L H + ++AFS G A S
Sbjct: 234 ALSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291
>ref|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa protein [Mus musculus].
Length = 358
Score = 64.3 bits (155), Expect = 2e-10
Identities = 77/295 (26%), Positives = 128/295 (43%), Gaps = 12/295 (4%)
Frame = +2
Query: 125 EDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPA---NSMRLKYQHTGAVLDCAFY-DPTH 292
E + KF PN S L + +D + L++V N LK H+GAV++ + D +
Sbjct: 67 EGEVYCCKFHPNGST-LASAGFDRLILLWNVYGDCDNYATLK-GHSGAVMELHYNTDGSM 124
Query: 293 AWSGGLDHQLKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 466
+S D + + D T + + L G C ++ TGS D TVKLWD R
Sbjct: 125 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 184
Query: 467 PCNAGTFSQPEKVY--TLSVSGDRLIVGTAGRRVLVWDLRN--MGYVQQRRESSLKYQTR 634
TF +V T + + D++I G + VWDLR + Y + S+ +
Sbjct: 185 KAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLS- 243
Query: 635 CIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI--S 808
++ Y+LS+ V D P K++ C ++ + N+ + N + S
Sbjct: 244 ----LSSEGSYLLSNAMDNT-VRVWDVRPFAPKER----CVKIFQGNVHN-FEKNLLRCS 293
Query: 809 FHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 973
+ + A G +D FV +WD +++ L + + SI +AF D + ASS
Sbjct: 294 WSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASS 348
Score = 50.1 bits (118), Expect = 3e-06
Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 4/205 (1%)
Frame = +2
Query: 356 LVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCN--AGTFSQPEKVYTL--SVS 523
L+ H+ + C ++ P + + + +D+ + LW+ C+ A V L +
Sbjct: 62 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD 121
Query: 524 GDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVE 703
G L + + V VWD G +R + + C A Q S +G V +
Sbjct: 122 GSMLFSASTDKTVAVWDSET-GERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180
Query: 704 YLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNK 883
+ VQ + Y V A++F++ + +GG D + +WD
Sbjct: 181 DIRKKAAVQ--------------TFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 226
Query: 884 KRLCQFHRYPTSIASLAFSNDGTTL 958
K + S+ L+ S++G+ L
Sbjct: 227 KLTYTMRGHADSVTGLSLSSEGSYL 251
>ref|NP_849249.1| U3 small nucleolar RNA-associated protein 15 homolog [Mus
musculus].
Length = 528
Score = 59.7 bits (143), Expect = 4e-09
Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 7/185 (3%)
Frame = +2
Query: 167 QFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFY-DPTHAWSGGLDHQLKMHDLN 340
Q L+ S D V+L+D+ + +++ HT AV F D H SG D+ +K+ D+
Sbjct: 93 QLLVAGSEDGVVQLFDINGRAPLRQFEGHTKAVHTVDFTADNYHVVSGADDYTVKLWDIP 152
Query: 341 TDQENLV-GTHDAPIRCVEYCPEVN--VMVTGSWDQTVKLWDPRTPCN--AGTFSQPEKV 505
+E L H +RC ++N + VTGS+D TVK++D RT N QP +
Sbjct: 153 NSKEILTFKEHSDYVRC-GCASKLNPDLFVTGSYDHTVKIFDARTNKNVLCVEHGQPVES 211
Query: 506 YTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIE 685
L SG L+V GR V VWD+ G + ++ K T C+ + Q + S++
Sbjct: 212 VLLFPSGG-LLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTVT-CLCLSSSGQRLLSGSLD 269
Query: 686 GRVAV 700
+V V
Sbjct: 270 RKVKV 274
>ref|NP_083436.2| sperm-associated antigen 16 protein isoform 1 [Mus musculus].
Length = 639
Score = 59.7 bits (143), Expect = 4e-09
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 7/254 (2%)
Frame = +2
Query: 128 DGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFYD-PTHAWS 301
D +S F P+ S+ L SS D++++L+D+ L + H AV C ++ S
Sbjct: 403 DWLSGCCFHPSGSK-LATSSGDSTIKLWDLNKGECTLTLEGHNHAVWSCTWHSCGDFVAS 461
Query: 302 GGLDHQLKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT-PC 472
LD K+ D+N+++ L G H + +E+ P N+++T S D+T+ +WD RT C
Sbjct: 462 ASLDMTSKIWDVNSERCRYTLYG-HTDSVNSIEFFPFSNILLTASADKTLSVWDARTGKC 520
Query: 473 NAGTFSQPEKVYTLSVSGDRLIVGTAGRR--VLVWDLRNMGYVQQRRESSLKYQTRCIRA 646
+ V + + I+ + R +WD R + + I
Sbjct: 521 EQSLYGHMHSVNDATFTPRGHIIASCDARGVTKLWDFRKLIPIVS------------IDV 568
Query: 647 FPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHN 826
P+ V GRV + + + H+L + E V+++ F ++
Sbjct: 569 GPSSGNEVNFDQSGRVLAQASANGIIHLLDLKSGQIHKLVGHESE----VHSVVFSHLGE 624
Query: 827 TFATGGSDGFVNIW 868
+GGSDG + +W
Sbjct: 625 NLYSGGSDGTIRLW 638
>ref|NP_080004.1| sperm-associated antigen 16 protein isoform 2 [Mus musculus].
Length = 310
Score = 59.7 bits (143), Expect = 4e-09
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 7/254 (2%)
Frame = +2
Query: 128 DGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFYD-PTHAWS 301
D +S F P+ S+ L SS D++++L+D+ L + H AV C ++ S
Sbjct: 74 DWLSGCCFHPSGSK-LATSSGDSTIKLWDLNKGECTLTLEGHNHAVWSCTWHSCGDFVAS 132
Query: 302 GGLDHQLKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT-PC 472
LD K+ D+N+++ L G H + +E+ P N+++T S D+T+ +WD RT C
Sbjct: 133 ASLDMTSKIWDVNSERCRYTLYG-HTDSVNSIEFFPFSNILLTASADKTLSVWDARTGKC 191
Query: 473 NAGTFSQPEKVYTLSVSGDRLIVGTAGRR--VLVWDLRNMGYVQQRRESSLKYQTRCIRA 646
+ V + + I+ + R +WD R + + I
Sbjct: 192 EQSLYGHMHSVNDATFTPRGHIIASCDARGVTKLWDFRKLIPIVS------------IDV 239
Query: 647 FPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHN 826
P+ V GRV + + + H+L + E V+++ F ++
Sbjct: 240 GPSSGNEVNFDQSGRVLAQASANGIIHLLDLKSGQIHKLVGHESE----VHSVVFSHLGE 295
Query: 827 TFATGGSDGFVNIW 868
+GGSDG + +W
Sbjct: 296 NLYSGGSDGTIRLW 309
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 58.2 bits (139), Expect = 1e-08
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Frame = +2
Query: 134 ISSVKFSPNTSQFLLVSSWDTSVRLYDV-PANSMRLKYQHTGAVLDCAF-YDPTHAWSGG 307
ISSVKFSPN ++L S+ D + ++ N + Y H+ + D A+ D + S
Sbjct: 42 ISSVKFSPN-GEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSAS 100
Query: 308 LDHQLKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT-PC-- 472
D LK+ D+ + + + L G H + C ++ P N++V+GS+D++VK+W+ +T C
Sbjct: 101 DDKTLKVWDMRSGKCLKTLKG-HSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLK 159
Query: 473 NAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWD 574
S P + +G ++ G+ +WD
Sbjct: 160 TLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWD 193
>ref|NP_001153489.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
[Mus musculus].
Length = 340
Score = 55.8 bits (133), Expect = 6e-08
Identities = 70/283 (24%), Positives = 116/283 (40%), Gaps = 14/283 (4%)
Frame = +2
Query: 164 SQFLLVSSWDTSVRLYD-VPANSMRLKYQHTGAVLDCAFYDPT--HAWSGGLDHQLKMHD 334
S+ L+ +S D + ++D N + + V+ CA Y P+ + GGLD+ +++
Sbjct: 67 SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYN 125
Query: 335 LNTDQENL-----VGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFS-QP 496
L T + N+ + H + C + + N +VT S D T LWD T TF+
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 497 EKVYTLSVSGD-RLIV-GTAGRRVLVWDLRNMGYVQQR---RESSLKYQTRCIRAFPNKQ 661
V +LS++ D RL V G +WD+R G +Q ES + I FPN
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDIN----AICFFPNGN 239
Query: 662 GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATG 841
+ S + + L E+ + +NI I + ++SF G
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSH---------DNI--ICGITSVSFSKSGRLLLAG 288
Query: 842 GSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIAS 970
D N+WD R + ++ L ++DG +A S
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Score = 49.3 bits (116), Expect = 6e-06
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Frame = +2
Query: 125 EDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSG 304
E I+++ F PN + F S D + RL+D+ A+ + Y H + C + + SG
Sbjct: 226 ESDINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTYSHDNII--CGITSVSFSKSG 282
Query: 305 GL------DHQLKMHD-LNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 457
L D + D L D+ ++ HD + C+ + + TGSWD +K+W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,552,063
Number of extensions: 1161427
Number of successful extensions: 4666
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 4474
Number of HSP's successfully gapped: 33
Length of query: 378
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 275
Effective length of database: 12,523,851
Effective search space: 3444059025
Effective search space used: 3444059025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013313
(1135 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007794.1| mitotic checkpoint protein BUB3 isoform b [H... 681 0.0
Alignment gi|NP_004716.1| mitotic checkpoint protein BUB3 isoform a [Homo... 679 0.0
Alignment gi|NP_003601.1| mRNA export factor [Homo sapiens]. 193 3e-49
Alignment gi|NP_001015885.1| mRNA export factor [Homo sapiens]. 193 3e-49
Alignment gi|NP_001155052.1| POC1 centriolar protein homolog A isoform 2 ... 64 2e-10
Alignment gi|NP_056241.3| POC1 centriolar protein homolog A isoform 1 [Ho... 64 2e-10
Alignment gi|NP_004805.2| U5 small nuclear ribonucleoprotein 40 kDa prote... 64 3e-10
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 60 5e-09
Alignment gi|NP_115551.2| U3 small nucleolar RNA-associated protein 15 ho... 58 2e-08
Alignment gi|NP_001038941.1| WD repeat-containing protein 38 [Homo sapien... 57 2e-08
>ref|NP_001007794.1| mitotic checkpoint protein BUB3 isoform b [Homo sapiens].
Length = 326
Score = 681 bits (1756), Expect = 0.0
Identities = 326/326 (100%), Positives = 326/326 (100%)
Frame = +2
Query: 86 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 265
MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
Sbjct: 1 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 60
Query: 266 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 445
DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
Sbjct: 61 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 120
Query: 446 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 625
KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
Sbjct: 121 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 180
Query: 626 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 805
QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
Sbjct: 181 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 240
Query: 806 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 985
SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
Sbjct: 241 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 300
Query: 986 MDDTEHPEDGIFIRQVTDAETKPKST 1063
MDDTEHPEDGIFIRQVTDAETKPKST
Sbjct: 301 MDDTEHPEDGIFIRQVTDAETKPKST 326
>ref|NP_004716.1| mitotic checkpoint protein BUB3 isoform a [Homo sapiens].
Length = 328
Score = 679 bits (1751), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Frame = +2
Query: 86 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 265
MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
Sbjct: 1 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 60
Query: 266 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 445
DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
Sbjct: 61 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 120
Query: 446 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 625
KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
Sbjct: 121 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 180
Query: 626 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 805
QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
Sbjct: 181 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 240
Query: 806 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 985
SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
Sbjct: 241 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 300
Query: 986 MDDTEHPEDGIFIRQVTDAETKPKS 1060
MDDTEHPEDGIFIRQVTDAETKPKS
Sbjct: 301 MDDTEHPEDGIFIRQVTDAETKPKS 325
>ref|NP_003601.1| mRNA export factor [Homo sapiens].
Length = 368
Score = 193 bits (490), Expect = 3e-49
Identities = 116/338 (34%), Positives = 177/338 (52%), Gaps = 18/338 (5%)
Frame = +2
Query: 101 EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 265
+ ++ P+D I + FSP T FL+ SW VR ++V + + + HTG VL
Sbjct: 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 90
Query: 266 D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 436
D C D + ++ D KM DL+++Q + HDAP++ + + P + ++TGSWD
Sbjct: 91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 150
Query: 437 QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 616
+T+K WD R+ PE+ Y V +V TA R ++V+ L N +R ES
Sbjct: 151 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 210
Query: 617 LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 778
LK+Q RC+ F +KQ G+ L SIEGRVA+ Y++P P K + FKCHR N
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTSA 269
Query: 779 -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTT 955
+ IY VN I+FH +H T AT GSDG + WD + +L + I++ F+++G
Sbjct: 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329
Query: 956 LAIASSYMYEMDD---TEHPEDGIFIRQVTDAETKPKS 1060
A ASSY + ++ IF+R + E KP++
Sbjct: 330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRN 366
>ref|NP_001015885.1| mRNA export factor [Homo sapiens].
Length = 368
Score = 193 bits (490), Expect = 3e-49
Identities = 116/338 (34%), Positives = 177/338 (52%), Gaps = 18/338 (5%)
Frame = +2
Query: 101 EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 265
+ ++ P+D I + FSP T FL+ SW VR ++V + + + HTG VL
Sbjct: 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 90
Query: 266 D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 436
D C D + ++ D KM DL+++Q + HDAP++ + + P + ++TGSWD
Sbjct: 91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 150
Query: 437 QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 616
+T+K WD R+ PE+ Y V +V TA R ++V+ L N +R ES
Sbjct: 151 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 210
Query: 617 LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 778
LK+Q RC+ F +KQ G+ L SIEGRVA+ Y++P P K + FKCHR N
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTSA 269
Query: 779 -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTT 955
+ IY VN I+FH +H T AT GSDG + WD + +L + I++ F+++G
Sbjct: 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329
Query: 956 LAIASSYMYEMDD---TEHPEDGIFIRQVTDAETKPKS 1060
A ASSY + ++ IF+R + E KP++
Sbjct: 330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRN 366
>ref|NP_001155052.1| POC1 centriolar protein homolog A isoform 2 [Homo sapiens].
Length = 359
Score = 64.3 bits (155), Expect = 2e-10
Identities = 69/298 (23%), Positives = 113/298 (37%), Gaps = 16/298 (5%)
Frame = +2
Query: 128 DGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAW--S 301
D ++ V FS NT Q L S D+ + ++ + S ++ + C + P+ S
Sbjct: 20 DAVTCVDFSINTKQ-LASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLAS 78
Query: 302 GGLDHQLKMHDLNTDQENLV-GTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNA 478
G D +++ N E+ V H A +R V +C + VT S D+TVK+W
Sbjct: 79 GSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFL 138
Query: 479 GTFSQP---EKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAF 649
+ SQ + S G ++ + + V +WD K C+ ++
Sbjct: 139 FSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD---------------KSSRECVHSY 183
Query: 650 PNKQGYVLSSIEGRVAVEYLDPSP----------EVQKKKYAFKCHRLKENNIEQIYPVN 799
G+V Y+D P + K + + HRL ++ VN
Sbjct: 184 CEHGGFVT----------YVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVN 233
Query: 800 AISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 973
+SFH N T SD + I D + L H + ++AFS G A S
Sbjct: 234 GLSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291
>ref|NP_056241.3| POC1 centriolar protein homolog A isoform 1 [Homo sapiens].
Length = 407
Score = 64.3 bits (155), Expect = 2e-10
Identities = 69/298 (23%), Positives = 113/298 (37%), Gaps = 16/298 (5%)
Frame = +2
Query: 128 DGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAW--S 301
D ++ V FS NT Q L S D+ + ++ + S ++ + C + P+ S
Sbjct: 20 DAVTCVDFSINTKQ-LASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLAS 78
Query: 302 GGLDHQLKMHDLNTDQENLV-GTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNA 478
G D +++ N E+ V H A +R V +C + VT S D+TVK+W
Sbjct: 79 GSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFL 138
Query: 479 GTFSQP---EKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAF 649
+ SQ + S G ++ + + V +WD K C+ ++
Sbjct: 139 FSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD---------------KSSRECVHSY 183
Query: 650 PNKQGYVLSSIEGRVAVEYLDPSP----------EVQKKKYAFKCHRLKENNIEQIYPVN 799
G+V Y+D P + K + + HRL ++ VN
Sbjct: 184 CEHGGFVT----------YVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVN 233
Query: 800 AISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 973
+SFH N T SD + I D + L H + ++AFS G A S
Sbjct: 234 GLSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291
>ref|NP_004805.2| U5 small nuclear ribonucleoprotein 40 kDa protein [Homo sapiens].
Length = 357
Score = 63.9 bits (154), Expect = 3e-10
Identities = 77/295 (26%), Positives = 128/295 (43%), Gaps = 12/295 (4%)
Frame = +2
Query: 125 EDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPA---NSMRLKYQHTGAVLDCAFY-DPTH 292
E + KF PN S L + +D + L++V N LK H+GAV++ + D +
Sbjct: 66 EGEVYCCKFHPNGST-LASAGFDRLILLWNVYGDCDNYATLK-GHSGAVMELHYNTDGSM 123
Query: 293 AWSGGLDHQLKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 466
+S D + + D T + + L G C ++ TGS D TVKLWD R
Sbjct: 124 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 183
Query: 467 PCNAGTFSQPEKVY--TLSVSGDRLIVGTAGRRVLVWDLRN--MGYVQQRRESSLKYQTR 634
TF +V T + + D++I G + VWDLR + Y + S+ +
Sbjct: 184 KAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLS- 242
Query: 635 CIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI--S 808
++ Y+LS+ V D P K++ C ++ + N+ + N + S
Sbjct: 243 ----LSSEGSYLLSNAMDNT-VRVWDVRPFAPKER----CVKIFQGNVHN-FEKNLLRCS 292
Query: 809 FHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 973
+ + A G +D FV +WD +++ L + + SI +AF D + ASS
Sbjct: 293 WSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347
Score = 50.1 bits (118), Expect = 4e-06
Identities = 43/205 (20%), Positives = 82/205 (40%), Gaps = 4/205 (1%)
Frame = +2
Query: 356 LVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCN--AGTFSQPEKVYTL--SVS 523
L+ H+ + C ++ P + + + +D+ + LW+ C+ A V L +
Sbjct: 61 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD 120
Query: 524 GDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVE 703
G L + + V VWD G +R + + C A Q S +G V +
Sbjct: 121 GSMLFSASTDKTVAVWDSET-GERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 179
Query: 704 YLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNK 883
+ +KK A + + Y V A++F++ + +GG D + +WD
Sbjct: 180 DI-------RKKAAIQ-------TFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 225
Query: 884 KRLCQFHRYPTSIASLAFSNDGTTL 958
K + S+ L+ S++G+ L
Sbjct: 226 KLTYTMRGHADSVTGLSLSSEGSYL 250
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 59.7 bits (143), Expect = 5e-09
Identities = 77/326 (23%), Positives = 125/326 (38%), Gaps = 47/326 (14%)
Frame = +2
Query: 134 ISSVKFSPNTSQFLLVSSWDTSVRLYDVPANS-MRLKYQHTGAVLDCAFYDP--THAWSG 304
+++V + + S F+ S+D + +L+D + + H V AF +P +G
Sbjct: 95 LTNVALNKSGSCFI-TGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATG 153
Query: 305 GLDHQLKMHDLNTDQ-ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAG 481
D K+ + T + + H A I C+ + P+ ++ TGS D T KLWD
Sbjct: 154 SFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWD-------- 205
Query: 482 TFSQPEKVYTL------------SVSGDRLIVGTAGRRVLVWDLRN-------MGYVQQR 604
E+VYTL + SGDR+I G+ V+VWD +G+ +
Sbjct: 206 -IQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEI 264
Query: 605 RESSLKYQTRCI---------RAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAF--- 748
+S + I + + G ++++ G E LD + K A
Sbjct: 265 SSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGH-DDEILDSCFDYTGKLIATASA 323
Query: 749 ------------KCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRL 892
KC E + +I + ISF+ N TG SD IWD + L
Sbjct: 324 DGTARIFSAATRKCIAKLEGHEGEI---SKISFNPQGNHLLTGSSDKTARIWDAQTGQCL 380
Query: 893 CQFHRYPTSIASLAFSNDGTTLAIAS 970
+ I S AF+ G + S
Sbjct: 381 QVLEGHTDEIFSCAFNYKGNIVITGS 406
>ref|NP_115551.2| U3 small nucleolar RNA-associated protein 15 homolog [Homo
sapiens].
Length = 518
Score = 57.8 bits (138), Expect = 2e-08
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 7/185 (3%)
Frame = +2
Query: 167 QFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFY-DPTHAWSGGLDHQLKMHDLN 340
+ L+ S D V+L+D+ + +++ HT AV F D H SG D+ +K+ D+
Sbjct: 93 RLLVAGSEDGGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIP 152
Query: 341 TDQENLV-GTHDAPIRCVEYCPEVN--VMVTGSWDQTVKLWDPRTPCN--AGTFSQPEKV 505
+E L H +RC ++N + +TGS+D TVK++D RT + + QP +
Sbjct: 153 NSKEILTFKEHSDYVRC-GCASKLNPDLFITGSYDHTVKMFDARTSESVLSVEHGQPVES 211
Query: 506 YTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIE 685
L SG L+V GR V VWD+ G + ++ K T C+ + Q + S++
Sbjct: 212 VLLFPSGG-LLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTVT-CLCLSSSGQRLLSGSLD 269
Query: 686 GRVAV 700
+V V
Sbjct: 270 RKVKV 274
>ref|NP_001038941.1| WD repeat-containing protein 38 [Homo sapiens].
Length = 314
Score = 57.4 bits (137), Expect = 2e-08
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Frame = +2
Query: 146 KFSPNTSQFLLVSSWDTSVRLYDVP-ANSMRLKYQHTGAVLDCAFY-DPTHAWSGGLDHQ 319
+FSP+ F S D +VRL+DV A +R+ H +V +F D SGG D +
Sbjct: 70 RFSPDGHLFASASC-DCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKR 128
Query: 320 LKMHDLNTDQ--ENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPR 463
+ + D+ + Q LVG D+ I+ ++ P VN + TGSWD TV +WD R
Sbjct: 129 VMLWDVQSGQMLRLLVGHRDS-IQSSDFSPTVNCLATGSWDSTVHIWDLR 177
Score = 53.9 bits (128), Expect = 3e-07
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Frame = +2
Query: 134 ISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSM-RLKYQHTGAVLDCAFYDPTHAWS-GG 307
+ +V FSP++ Q L WD V L+DV + M RL H ++ F + + G
Sbjct: 108 VETVSFSPDSRQ-LASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGS 166
Query: 308 LDHQLKMHDLN-----TDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPC 472
D + + DL + L G H A I C+ Y ++ +GSWD+T+ +W P T
Sbjct: 167 WDSTVHIWDLRMVTPAVSHQALEG-HSANISCLCYSAS-GLLASGSWDKTIHIWKPTTSS 224
Query: 473 NAGTF-SQPEKVYTLSVSGDRLIVGTAG--RRVLVWD 574
V +++ S D L + +AG R V VWD
Sbjct: 225 LLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWD 261
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,698,021
Number of extensions: 1372291
Number of successful extensions: 5330
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 5113
Number of HSP's successfully gapped: 39
Length of query: 378
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,868,908
Effective search space: 4074080792
Effective search space used: 4074080792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013313
(1135 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 440 e-121
Sscrofa_Chr01 92 8e-16
>Sscrofa_Chr14
|| Length = 153851969
Score = 440 bits (222), Expect = e-121
Identities = 222/222 (100%)
Strand = Plus / Plus
Query: 837 caggtggttctgatggatttgttaatatttgggatccatttaacaaaaagcgactgtgcc 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144299370 caggtggttctgatggatttgttaatatttgggatccatttaacaaaaagcgactgtgcc 144299429
Query: 897 aattccatcggtaccccaccagcattgcatcccttgccttcagtaatgatgggaccacac 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144299430 aattccatcggtaccccaccagcattgcatcccttgccttcagtaatgatgggaccacac 144299489
Query: 957 ttgctatagcatcatcttatatgtatgaaatggatgacacagaacatcccgaagatggta 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144299490 ttgctatagcatcatcttatatgtatgaaatggatgacacagaacatcccgaagatggta 144299549
Query: 1017 tcttcattcgccaagtgacagatgcagaaacaaaacccaagt 1058
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144299550 tcttcattcgccaagtgacagatgcagaaacaaaacccaagt 144299591
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 84 agatgaccggttctaacgagttcaagctgaaccagccacccgaggacggcatctcctcgg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144290572 agatgaccggttctaacgagttcaagctgaaccagccacccgaggacggcatctcctcgg 144290631
Query: 144 tgaaattcagccccaacacctcccagttcctgttggtttcttcctgggacacatccgtgc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144290632 tgaaattcagccccaacacctcccagttcctgttggtttcttcctgggacacatccgtgc 144290691
Query: 204 gcctctatgatgtgccggccaactccatgcggctcaagtaccagcacacgggcgccgtcc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144290692 gcctctatgatgtgccggccaactccatgcggctcaagtaccagcacacgggcgccgtcc 144290751
Query: 264 tggactgcgccttctacg 281
||||||||||||||||||
Sbjct: 144290752 tggactgcgccttctacg 144290769
Score = 365 bits (184), Expect = 4e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 658 gcagggttatgtattaagctccattgaaggccgagtggcagttgagtacttggacccaag 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144298944 gcagggttatgtattaagctccattgaaggccgagtggcagttgagtacttggacccaag 144299003
Query: 718 ccctgaggttcagaagaagaagtatgccttcaagtgtcaccgactaaaggaaaataacat 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144299004 ccctgaggttcagaagaagaagtatgccttcaagtgtcaccgactaaaggaaaataacat 144299063
Query: 778 tgagcagatttacccagtcaatgccatctcctttcacaatatccataatacttttgccac 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144299064 tgagcagatttacccagtcaatgccatctcctttcacaatatccataatacttttgccac 144299123
Query: 838 aggt 841
||||
Sbjct: 144299124 aggt 144299127
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 499 aaaggtgtacaccctctcagtgtctggagaccggctgattgtgggcactgccggccgcag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144296659 aaaggtgtacaccctctcagtgtctggagaccggctgattgtgggcactgccggccgcag 144296718
Query: 559 agtgttggtgtgggacttgcggaacatgggctacgtacagcagcgccgggagtccagcct 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144296719 agtgttggtgtgggacttgcggaacatgggctacgtacagcagcgccgggagtccagcct 144296778
Query: 619 gaagtaccagactcgctgcatacgggcgtttccaaacaagcagg 662
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144296779 gaagtaccagactcgctgcatacgggcgtttccaaacaagcagg 144296822
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 349 agaaaaccttgttggaacccatgatgcccctatcagatgtgttgaatattgtccagaagt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144294039 agaaaaccttgttggaacccatgatgcccctatcagatgtgttgaatattgtccagaagt 144294098
Query: 409 gaatgtgatggttactgggagctgggatcagacagttaaattgtgggatcccagaacccc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144294099 gaatgtgatggttactgggagctgggatcagacagttaaattgtgggatcccagaacccc 144294158
Query: 469 ttgtaatgctgggaccttttctcagcctgaaaaggt 504
||||||||||||||||||||||||||||||||||||
Sbjct: 144294159 ttgtaatgctgggaccttttctcagcctgaaaaggt 144294194
Score = 151 bits (76), Expect = 1e-33
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1057 gtccacctaatcgtctcgtgaaagtggtttctctatggaaagctttgttttgcttcctac 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144301849 gtccacctaatcgtctcgtgaaagtggtttctctatggaaagctttgttttgcttcctac 144301908
Query: 1117 aantacatgcttatcccct 1135
|| ||||||||||||||||
Sbjct: 144301909 aaatacatgcttatcccct 144301927
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 281 gatccaacgcatgcctggagtgggggattagaccatcaattaaaaatgcatgatttgaat 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144291518 gatccaacgcatgcctggagtgggggattagaccatcaattaaaaatgcatgatttgaat 144291577
Query: 341 accgatcaag 350
||||||||||
Sbjct: 144291578 accgatcaag 144291587
>Sscrofa_Chr01
|| Length = 315321322
Score = 91.7 bits (46), Expect = 8e-16
Identities = 156/192 (81%), Gaps = 12/192 (6%)
Strand = Plus / Minus
Query: 939 gtaatgatgggaccacacttgctatagcatcatcttatatgtatgaaatggatgacacag 998
||||||||||||| |||||||| || ||||||| ||||| ||||||||||| |||||||
Sbjct: 15980505 gtaatgatgggactacacttgcaatggcatcataatatatatatgaaatggaagacacag 15980446
Query: 999 aacatcccgaagatggtatcttcattcgccaagtgacagatgcagaaacaaaacccaagt 1058
||| || |||||||||||||| |||| |||| ||||||||||||||||||
Sbjct: 15980445 gacaacctgaagatggtatctt-attcaccaa---------gcagaaacaaaacccaagg 15980396
Query: 1059 ccacctaatcgtctcgtgaaagtggtttctctatggaaagctttgttttgcttcctacaa 1118
| ||||| || | | |||||||| ||||||||||||||| ||||| |||||||||
Sbjct: 15980395 ctacctagtcattccctgaaagtgatttctctatggaaag--atgtttgtcttcctacag 15980338
Query: 1119 ntacatgcttat 1130
|||||||||||
Sbjct: 15980337 ttacatgcttat 15980326
Score = 69.9 bits (35), Expect = 3e-09
Identities = 108/131 (82%), Gaps = 1/131 (0%)
Strand = Plus / Minus
Query: 348 aagaaaaccttgttggaacccatgatgcccctatcagatgtgttgaatattgtccagaag 407
||||||| | |||||||||||||||| ||| ||||||||||||||| || |||| ||
Sbjct: 15981077 aagaaaatcctgttggaacccatgattccc-tatcagatgtgttgattaccatccacaaa 15981019
Query: 408 tgaatgtgatggttactgggagctgggatcagacagttaaattgtgggatcccagaaccc 467
||||| || |||||| |||| ||||||||| || |||||||| || ||||||||| |
Sbjct: 15981018 tgaatatggtggttagtgggcattgggatcaggcacttaaattggggaatcccagaaatc 15980959
Query: 468 cttgtaatgct 478
||||| |||||
Sbjct: 15980958 cttgtcatgct 15980948
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,157,466
Number of extensions: 173
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 9
Length of query: 1135
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1114
Effective length of database: 2,808,413,156
Effective search space: 3128572255784
Effective search space used: 3128572255784
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)