Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013315
(1130 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073733.1| 1-acyl-sn-glycerol-3-phosphate acyltransfera... 432 e-121
Alignment gi|NP_803484.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase ... 206 3e-53
>ref|NP_001073733.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase beta [Bos taurus].
Length = 278
Score = 432 bits (1111), Expect = e-121
Identities = 211/272 (77%), Positives = 228/272 (83%)
Frame = +3
Query: 234 MDVWPWLSAAXXXXXXXXXLSRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENM 413
M++WPWL AA LSRSA+FYAKIGLYCA CFT S +AA CLLRHGGRTVENM
Sbjct: 1 MELWPWLIAALLLLLLLAQLSRSARFYAKIGLYCAFCFTASAMAAVVCLLRHGGRTVENM 60
Query: 414 SIISWFVRSFKYLYGLRFEIKGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAK 593
IISWFVRSFKY YGLRFE+KGR+ LDEDR CVIISNHQSILDMMGLME LPDRCVQI+K
Sbjct: 61 RIISWFVRSFKYAYGLRFEVKGRETLDEDRPCVIISNHQSILDMMGLMEVLPDRCVQISK 120
Query: 594 RELLFLGPVGLIMYLGGVIFINRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGD 773
RELLFLGPVGLIMYLGGV+FINRQ SQTA+S + DVGERMVREKLKVWIYPEGTRNDNGD
Sbjct: 121 RELLFLGPVGLIMYLGGVLFINRQHSQTAMSVMTDVGERMVREKLKVWIYPEGTRNDNGD 180
Query: 774 LLPFKKGAFYLAIQAQXXXXXXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVPTRGLTVAD 953
LLPFKKGAFYLAIQAQ +TKLFTSGTI+VEVLDA+PTRGLTVAD
Sbjct: 181 LLPFKKGAFYLAIQAQVPIIPVIYSSFSSFYSCKTKLFTSGTIQVEVLDAIPTRGLTVAD 240
Query: 954 IPRLMDTCYQAMRTSFFSISKTPQENGAPAGP 1049
+P+L+DTC+QAMRT FF ISK PQENGAP GP
Sbjct: 241 VPKLLDTCHQAMRTHFFHISKIPQENGAPLGP 272
>ref|NP_803484.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha [Bos taurus].
Length = 287
Score = 206 bits (524), Expect = 3e-53
Identities = 105/247 (42%), Positives = 151/247 (61%)
Frame = +3
Query: 294 SRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENMSIISWFVRSFKYLYGLRFEI 473
S SAK++ K+ Y ++++A C +R GR VENM I+ + KYLYG+R E+
Sbjct: 29 SPSAKYFFKMAFYNGWILFLAVLAIPVCAVR--GRNVENMKILRLMLLHIKYLYGIRVEV 86
Query: 474 KGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAKRELLFLGPVGLIMYLGGVIF 653
+G + V++SNHQS LD++G+ME LP RCV IAKRELL+ G GL +L GVIF
Sbjct: 87 RGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLPGRCVPIAKRELLWAGSAGLACWLAGVIF 146
Query: 654 INRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGDLLPFKKGAFYLAIQAQXXXX 833
I+R+R+ A+S +++V + ++ + ++VW++PEGTRN NG +LPFK+GAF+LA+QAQ
Sbjct: 147 IDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKRGAFHLAVQAQVPIV 206
Query: 834 XXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVPTRGLTVADIPRLMDTCYQAMRTSFFSIS 1013
+ + FTSG +V VL VPT GL D+P L D +M T F IS
Sbjct: 207 PIVMSSYQDFYCKKERRFTSGRCQVRVLPPVPTEGLKPDDVPALADRVRHSMLTVFREIS 266
Query: 1014 KTPQENG 1034
+ G
Sbjct: 267 TDGRGGG 273
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,259,876
Number of extensions: 1109485
Number of successful extensions: 7503
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7259
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013315
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013315
(1130 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548370.2| PREDICTED: similar to 1-acyl-sn-glycerol-3-phos... 340 2e-93
Alignment gi|XP_860775.1| PREDICTED: similar to 1-acylglycerol-3-phosphat... 209 5e-54
Alignment gi|XP_860735.1| PREDICTED: similar to 1-acylglycerol-3-phosphat... 209 5e-54
Alignment gi|XP_860706.1| PREDICTED: similar to 1-acylglycerol-3-phosphat... 209 5e-54
Alignment gi|XP_532091.1| PREDICTED: similar to 1-acylglycerol-3-phosphat... 209 5e-54
>ref|XP_548370.2| PREDICTED: similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase
beta (1-AGP acyltransferase 2) (1-AGPAT 2)
(Lysophosphatidic acid acyltransferase-beta) (LPAAT-beta)
(1-acylglycerol-3-phosphate O-acyltransferase 2) [Canis
familiaris].
Length = 242
Score = 340 bits (871), Expect = 2e-93
Identities = 175/270 (64%), Positives = 201/270 (74%)
Frame = +3
Query: 234 MDVWPWLSAAXXXXXXXXXLSRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENM 413
M++WPW++AA LSRS +FY++I LYCALC S A+ CLLRHGGR+VENM
Sbjct: 1 MELWPWVTAALLLLLLLVQLSRSVRFYSRITLYCALCVLASTAASVVCLLRHGGRSVENM 60
Query: 414 SIISWFVRSFKYLYGLRFEIKGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAK 593
II WFV SFKY++GLRFEIKGRQ+L+ D CVIISNHQSILDMMGLMEALP+RCVQIAK
Sbjct: 61 RIIQWFVLSFKYVFGLRFEIKGRQKLELDHPCVIISNHQSILDMMGLMEALPERCVQIAK 120
Query: 594 RELLFLGPVGLIMYLGGVIFINRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGD 773
RELLFLGPVGLIMYLGG+ FINRQ S+TAV+ +ADVGERMVRE N +
Sbjct: 121 RELLFLGPVGLIMYLGGIFFINRQHSRTAVTVMADVGERMVRE--------------NVN 166
Query: 774 LLPFKKGAFYLAIQAQXXXXXXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVPTRGLTVAD 953
LLPFKKGAFYLAIQ Q K+ SGTI+VEVLDA+PT GLTVAD
Sbjct: 167 LLPFKKGAFYLAIQTQG------------------KVIVSGTIRVEVLDAIPTSGLTVAD 208
Query: 954 IPRLMDTCYQAMRTSFFSISKTPQENGAPA 1043
+P+LMDTC+QAMRT+FF ISK QENGA A
Sbjct: 209 VPKLMDTCHQAMRTTFFRISKIAQENGATA 238
>ref|XP_860775.1| PREDICTED: similar to 1-acylglycerol-3-phosphate O-acyltransferase 1
isoform 5 [Canis familiaris].
Length = 287
Score = 209 bits (531), Expect = 5e-54
Identities = 106/247 (42%), Positives = 153/247 (61%)
Frame = +3
Query: 294 SRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENMSIISWFVRSFKYLYGLRFEI 473
S SAK++ K+ Y ++++A C +R GR VENM I+ + KYLYG+R E+
Sbjct: 29 SPSAKYFFKMAFYNGWILFLAVLAIPVCAVR--GRNVENMKILRLMLLHIKYLYGIRVEV 86
Query: 474 KGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAKRELLFLGPVGLIMYLGGVIF 653
+G + V++SNHQS LD++G+ME LP RCV IAKRELL+ G GL +L GVIF
Sbjct: 87 RGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLPGRCVPIAKRELLWAGSAGLACWLAGVIF 146
Query: 654 INRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGDLLPFKKGAFYLAIQAQXXXX 833
I+R+R+ A+S +++V + ++ + ++VW++PEGTRN NG +LPFK+GAF+LA+QAQ
Sbjct: 147 IDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKRGAFHLAVQAQVPIV 206
Query: 834 XXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVPTRGLTVADIPRLMDTCYQAMRTSFFSIS 1013
+ + FTSG +V VL VPT GLT D+P L D +M T F IS
Sbjct: 207 PIVMSSYQDFYCKKERRFTSGRCQVRVLPPVPTEGLTPDDVPALADRVRHSMLTVFREIS 266
Query: 1014 KTPQENG 1034
+ +G
Sbjct: 267 TDGRGSG 273
>ref|XP_860735.1| PREDICTED: similar to 1-acylglycerol-3-phosphate O-acyltransferase 1
isoform 4 [Canis familiaris].
Length = 287
Score = 209 bits (531), Expect = 5e-54
Identities = 106/247 (42%), Positives = 153/247 (61%)
Frame = +3
Query: 294 SRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENMSIISWFVRSFKYLYGLRFEI 473
S SAK++ K+ Y ++++A C +R GR VENM I+ + KYLYG+R E+
Sbjct: 29 SPSAKYFFKMAFYNGWILFLAVLAIPVCAVR--GRNVENMKILRLMLLHIKYLYGIRVEV 86
Query: 474 KGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAKRELLFLGPVGLIMYLGGVIF 653
+G + V++SNHQS LD++G+ME LP RCV IAKRELL+ G GL +L GVIF
Sbjct: 87 RGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLPGRCVPIAKRELLWAGSAGLACWLAGVIF 146
Query: 654 INRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGDLLPFKKGAFYLAIQAQXXXX 833
I+R+R+ A+S +++V + ++ + ++VW++PEGTRN NG +LPFK+GAF+LA+QAQ
Sbjct: 147 IDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKRGAFHLAVQAQVPIV 206
Query: 834 XXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVPTRGLTVADIPRLMDTCYQAMRTSFFSIS 1013
+ + FTSG +V VL VPT GLT D+P L D +M T F IS
Sbjct: 207 PIVMSSYQDFYCKKERRFTSGRCQVRVLPPVPTEGLTPDDVPALADRVRHSMLTVFREIS 266
Query: 1014 KTPQENG 1034
+ +G
Sbjct: 267 TDGRGSG 273
>ref|XP_860706.1| PREDICTED: similar to 1-acylglycerol-3-phosphate O-acyltransferase 1
isoform 3 [Canis familiaris].
Length = 289
Score = 209 bits (531), Expect = 5e-54
Identities = 106/247 (42%), Positives = 153/247 (61%)
Frame = +3
Query: 294 SRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENMSIISWFVRSFKYLYGLRFEI 473
S SAK++ K+ Y ++++A C +R GR VENM I+ + KYLYG+R E+
Sbjct: 29 SPSAKYFFKMAFYNGWILFLAVLAIPVCAVR--GRNVENMKILRLMLLHIKYLYGIRVEV 86
Query: 474 KGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAKRELLFLGPVGLIMYLGGVIF 653
+G + V++SNHQS LD++G+ME LP RCV IAKRELL+ G GL +L GVIF
Sbjct: 87 RGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLPGRCVPIAKRELLWAGSAGLACWLAGVIF 146
Query: 654 INRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGDLLPFKKGAFYLAIQAQXXXX 833
I+R+R+ A+S +++V + ++ + ++VW++PEGTRN NG +LPFK+GAF+LA+QAQ
Sbjct: 147 IDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKRGAFHLAVQAQVPIV 206
Query: 834 XXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVPTRGLTVADIPRLMDTCYQAMRTSFFSIS 1013
+ + FTSG +V VL VPT GLT D+P L D +M T F IS
Sbjct: 207 PIVMSSYQDFYCKKERRFTSGRCQVRVLPPVPTEGLTPDDVPALADRVRHSMLTVFREIS 266
Query: 1014 KTPQENG 1034
+ +G
Sbjct: 267 TDGRGSG 273
>ref|XP_532091.1| PREDICTED: similar to 1-acylglycerol-3-phosphate O-acyltransferase 1
isoform 1 [Canis familiaris].
Length = 287
Score = 209 bits (531), Expect = 5e-54
Identities = 106/247 (42%), Positives = 153/247 (61%)
Frame = +3
Query: 294 SRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENMSIISWFVRSFKYLYGLRFEI 473
S SAK++ K+ Y ++++A C +R GR VENM I+ + KYLYG+R E+
Sbjct: 29 SPSAKYFFKMAFYNGWILFLAVLAIPVCAVR--GRNVENMKILRLMLLHIKYLYGIRVEV 86
Query: 474 KGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAKRELLFLGPVGLIMYLGGVIF 653
+G + V++SNHQS LD++G+ME LP RCV IAKRELL+ G GL +L GVIF
Sbjct: 87 RGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLPGRCVPIAKRELLWAGSAGLACWLAGVIF 146
Query: 654 INRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGDLLPFKKGAFYLAIQAQXXXX 833
I+R+R+ A+S +++V + ++ + ++VW++PEGTRN NG +LPFK+GAF+LA+QAQ
Sbjct: 147 IDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKRGAFHLAVQAQVPIV 206
Query: 834 XXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVPTRGLTVADIPRLMDTCYQAMRTSFFSIS 1013
+ + FTSG +V VL VPT GLT D+P L D +M T F IS
Sbjct: 207 PIVMSSYQDFYCKKERRFTSGRCQVRVLPPVPTEGLTPDDVPALADRVRHSMLTVFREIS 266
Query: 1014 KTPQENG 1034
+ +G
Sbjct: 267 TDGRGSG 273
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,354,454
Number of extensions: 1037365
Number of successful extensions: 7411
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7200
Number of HSP's successfully gapped: 5
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013315
(1130 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124006.1| 1-acyl-sn-glycerol-3-phosphate acyltransfera... 491 e-139
Alignment gi|NP_001028180.1| 1-acyl-sn-glycerol-3-phosphate acyltransfera... 209 3e-54
>ref|NP_001124006.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase beta [Sus scrofa].
Length = 278
Score = 491 bits (1264), Expect = e-139
Identities = 250/274 (91%), Positives = 250/274 (91%)
Frame = +3
Query: 234 MDVWPWLSAAXXXXXXXXXLSRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENM 413
MDVWPWLSAA LSRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENM
Sbjct: 1 MDVWPWLSAALLLLLLLVQLSRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENM 60
Query: 414 SIISWFVRSFKYLYGLRFEIKGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAK 593
SIISWFVRSFKYLYGLRFEIKGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAK
Sbjct: 61 SIISWFVRSFKYLYGLRFEIKGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAK 120
Query: 594 RELLFLGPVGLIMYLGGVIFINRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGD 773
RELLFLGPVGLIMYLGGVIFINRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGD
Sbjct: 121 RELLFLGPVGLIMYLGGVIFINRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGD 180
Query: 774 LLPFKKGAFYLAIQAQXXXXXXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVPTRGLTVAD 953
LLPFKKGAFYLAIQAQ DSRTKLFTSGTIKVEVLDAVPTRGLTVAD
Sbjct: 181 LLPFKKGAFYLAIQAQVPIVPVVYSSFSSFYDSRTKLFTSGTIKVEVLDAVPTRGLTVAD 240
Query: 954 IPRLMDTCYQAMRTSFFSISKTPQENGAPAGPAA 1055
IPRLMDTCYQAMRTSFFSISKTPQENGAPAGPAA
Sbjct: 241 IPRLMDTCYQAMRTSFFSISKTPQENGAPAGPAA 274
>ref|NP_001028180.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha [Sus scrofa].
Length = 287
Score = 209 bits (531), Expect = 3e-54
Identities = 106/247 (42%), Positives = 152/247 (61%)
Frame = +3
Query: 294 SRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENMSIISWFVRSFKYLYGLRFEI 473
S SAK++ K+ Y ++++A C +R GR VENM I+ + KYLYG+R E+
Sbjct: 29 SPSAKYFLKMAFYNGWILFLAVLAIPACAVR--GRNVENMKILRLMLLHIKYLYGIRVEV 86
Query: 474 KGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAKRELLFLGPVGLIMYLGGVIF 653
+G + V++SNHQS LD++G+ME LP RCV IAKRELL+ G GL +L GVIF
Sbjct: 87 RGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLPGRCVPIAKRELLWAGSAGLACWLAGVIF 146
Query: 654 INRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGDLLPFKKGAFYLAIQAQXXXX 833
I+R+R+ A+S +++V + ++ + ++VW++PEGTRN NG +LPFK+GAF+LA+QAQ
Sbjct: 147 IDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKRGAFHLAVQAQVPIV 206
Query: 834 XXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVPTRGLTVADIPRLMDTCYQAMRTSFFSIS 1013
+ + FTSG +V VL VPT GLT D+P L D +M T F IS
Sbjct: 207 PIVMSSYQDFYCKKERRFTSGRCQVRVLPPVPTEGLTPDDVPALADRVRHSMLTVFREIS 266
Query: 1014 KTPQENG 1034
+ G
Sbjct: 267 TDGRGGG 273
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,005,332
Number of extensions: 897138
Number of successful extensions: 5164
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4985
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013315
(1130 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080488.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase ... 383 e-106
Alignment gi|NP_061350.3| 1-acyl-sn-glycerol-3-phosphate acyltransferase ... 206 4e-53
Alignment gi|NP_001156851.1| 1-acyl-sn-glycerol-3-phosphate acyltransfera... 206 4e-53
>ref|NP_080488.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase beta [Mus musculus].
Length = 278
Score = 383 bits (983), Expect = e-106
Identities = 186/272 (68%), Positives = 217/272 (79%)
Frame = +3
Query: 234 MDVWPWLSAAXXXXXXXXXLSRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENM 413
MD WPWL+AA LSR+A+FYAK+GLYC LC + S A+ CLLRHGGRTV+NM
Sbjct: 1 MDPWPWLTAALLLLLLLVQLSRTARFYAKVGLYCVLCLSFSAAASIVCLLRHGGRTVDNM 60
Query: 414 SIISWFVRSFKYLYGLRFEIKGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAK 593
SIISWFVRSFKY+YGLRFE+ G+++L+ D CVIISNHQSILDMMGLME LP RCVQIAK
Sbjct: 61 SIISWFVRSFKYVYGLRFEVSGQKKLEVDGPCVIISNHQSILDMMGLMEILPKRCVQIAK 120
Query: 594 RELLFLGPVGLIMYLGGVIFINRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGD 773
REL+F GPVGLIMYLGGV FINRQ+++TA+S +AD+G+ MV+E LKVWIYPEGTRNDNGD
Sbjct: 121 RELMFTGPVGLIMYLGGVYFINRQQARTAMSVMADLGDLMVKENLKVWIYPEGTRNDNGD 180
Query: 774 LLPFKKGAFYLAIQAQXXXXXXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVPTRGLTVAD 953
LLPFKKGAFYLAIQAQ + +TKLFTSGTIKV+VLDAVPT GLT AD
Sbjct: 181 LLPFKKGAFYLAIQAQVPIIPVVYSSFSSFYNVKTKLFTSGTIKVQVLDAVPTNGLTDAD 240
Query: 954 IPRLMDTCYQAMRTSFFSISKTPQENGAPAGP 1049
+ +L+DTCYQ+MR +F IS+ PQEN A P
Sbjct: 241 VTKLVDTCYQSMRATFLQISQIPQENSAIKEP 272
>ref|NP_061350.3| 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha isoform 2 [Mus
musculus].
Length = 285
Score = 206 bits (523), Expect = 4e-53
Identities = 110/266 (41%), Positives = 159/266 (59%), Gaps = 6/266 (2%)
Frame = +3
Query: 234 MDVWP--WLSAAXXXXXXXXXL---SRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGR 398
M++WP W + L S SAK++ K+ Y ++I+A C +R GR
Sbjct: 1 MELWPGAWTALLLLLLLLLSTLWFCSSSAKYFFKMAFYNGWILFLAILAIPVCAVR--GR 58
Query: 399 TVENMSIISWFVRSFKYLYGLRFEIKGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRC 578
VENM I+ + KYLYG+R E++G + V++SNHQS LD++G+ME LPDRC
Sbjct: 59 NVENMKILRLLLLHVKYLYGIRVEVRGAHHFPPTQPYVVVSNHQSSLDLLGMMEVLPDRC 118
Query: 579 VQIAKRELLFLGPVGLIMYLGGVIFINRQRSQTAVSALADVGERMVREKLKVWIYPEGTR 758
V IAKRELL+ G GL +L G+IFI+R+R+ A+S +++V + ++ + ++VW++PEGTR
Sbjct: 119 VPIAKRELLWAGSAGLACWLAGIIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTR 178
Query: 759 NDNGDLLPFKKGAFYLAIQAQXXXXXXXXXXXXXXXDSRTKLFTS-GTIKVEVLDAVPTR 935
N NG +LPFK+GAF+LA+QAQ + + FTS G +V VL V T
Sbjct: 179 NHNGSMLPFKRGAFHLAVQAQVPIIPIVMSSYQDFYSKKERRFTSPGRCQVRVLPPVSTE 238
Query: 936 GLTVADIPRLMDTCYQAMRTSFFSIS 1013
GLT D+P L D+ +M T F IS
Sbjct: 239 GLTPDDVPALADSVRHSMLTIFREIS 264
>ref|NP_001156851.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha isoform 1 [Mus
musculus].
Length = 285
Score = 206 bits (523), Expect = 4e-53
Identities = 110/266 (41%), Positives = 159/266 (59%), Gaps = 6/266 (2%)
Frame = +3
Query: 234 MDVWP--WLSAAXXXXXXXXXL---SRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGR 398
M++WP W + L S SAK++ K+ Y ++I+A C +R GR
Sbjct: 1 MELWPGAWTALLLLLLLLLSTLWFCSSSAKYFFKMAFYNGWILFLAILAIPVCAVR--GR 58
Query: 399 TVENMSIISWFVRSFKYLYGLRFEIKGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRC 578
VENM I+ + KYLYG+R E++G + V++SNHQS LD++G+ME LPDRC
Sbjct: 59 NVENMKILRLLLLHVKYLYGIRVEVRGAHHFPPTQPYVVVSNHQSSLDLLGMMEVLPDRC 118
Query: 579 VQIAKRELLFLGPVGLIMYLGGVIFINRQRSQTAVSALADVGERMVREKLKVWIYPEGTR 758
V IAKRELL+ G GL +L G+IFI+R+R+ A+S +++V + ++ + ++VW++PEGTR
Sbjct: 119 VPIAKRELLWAGSAGLACWLAGIIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTR 178
Query: 759 NDNGDLLPFKKGAFYLAIQAQXXXXXXXXXXXXXXXDSRTKLFTS-GTIKVEVLDAVPTR 935
N NG +LPFK+GAF+LA+QAQ + + FTS G +V VL V T
Sbjct: 179 NHNGSMLPFKRGAFHLAVQAQVPIIPIVMSSYQDFYSKKERRFTSPGRCQVRVLPPVSTE 238
Query: 936 GLTVADIPRLMDTCYQAMRTSFFSIS 1013
GLT D+P L D+ +M T F IS
Sbjct: 239 GLTPDDVPALADSVRHSMLTIFREIS 264
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,316,273
Number of extensions: 789701
Number of successful extensions: 5649
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5425
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013315
(1130 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006403.2| 1-acyl-sn-glycerol-3-phosphate acyltransferase ... 396 e-110
Alignment gi|NP_001012745.1| 1-acyl-sn-glycerol-3-phosphate acyltransfera... 319 3e-87
Alignment gi|NP_006402.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase ... 210 2e-54
Alignment gi|NP_116130.2| 1-acyl-sn-glycerol-3-phosphate acyltransferase ... 210 2e-54
>ref|NP_006403.2| 1-acyl-sn-glycerol-3-phosphate acyltransferase beta isoform a [Homo
sapiens].
Length = 278
Score = 396 bits (1018), Expect = e-110
Identities = 192/271 (70%), Positives = 221/271 (81%)
Frame = +3
Query: 234 MDVWPWLSAAXXXXXXXXXLSRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENM 413
M++WP L+AA LSR+A+FYAK+ LYCALCFTVS VA+ CLLRHGGRTVENM
Sbjct: 1 MELWPCLAAALLLLLLLVQLSRAAEFYAKVALYCALCFTVSAVASLVCLLRHGGRTVENM 60
Query: 414 SIISWFVRSFKYLYGLRFEIKGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAK 593
SII WFVRSFKY YGLRFE++ +RL E R CVI+SNHQSILDMMGLME LP+RCVQIAK
Sbjct: 61 SIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQIAK 120
Query: 594 RELLFLGPVGLIMYLGGVIFINRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGD 773
RELLFLGPVGLIMYLGGV FINRQRS TA++ +AD+GERMVRE LKVWIYPEGTRNDNGD
Sbjct: 121 RELLFLGPVGLIMYLGGVFFINRQRSSTAMTVMADLGERMVRENLKVWIYPEGTRNDNGD 180
Query: 774 LLPFKKGAFYLAIQAQXXXXXXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVPTRGLTVAD 953
LLPFKKGAFYLA+QAQ +++ K FTSGT+ V+VL+A+PT GLT AD
Sbjct: 181 LLPFKKGAFYLAVQAQVPIVPVVYSSFSSFYNTKKKFFTSGTVTVQVLEAIPTSGLTAAD 240
Query: 954 IPRLMDTCYQAMRTSFFSISKTPQENGAPAG 1046
+P L+DTC++AMRT+F ISKTPQENGA AG
Sbjct: 241 VPALVDTCHRAMRTTFLHISKTPQENGATAG 271
>ref|NP_001012745.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase beta isoform b [Homo
sapiens].
Length = 246
Score = 319 bits (817), Expect = 3e-87
Identities = 164/271 (60%), Positives = 195/271 (71%)
Frame = +3
Query: 234 MDVWPWLSAAXXXXXXXXXLSRSAKFYAKIGLYCALCFTVSIVAAATCLLRHGGRTVENM 413
M++WP L+AA LSR+A+FYAK+ LYCALCFTVS VA+ CLLRHGGRTVENM
Sbjct: 1 MELWPCLAAALLLLLLLVQLSRAAEFYAKVALYCALCFTVSAVASLVCLLRHGGRTVENM 60
Query: 414 SIISWFVRSFKYLYGLRFEIKGRQRLDEDRSCVIISNHQSILDMMGLMEALPDRCVQIAK 593
SII WFVRSFKY YGLRFE++ +RL E R CVI+SNHQSILDMMGLME LP+RCVQIAK
Sbjct: 61 SIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQIAK 120
Query: 594 RELLFLGPVGLIMYLGGVIFINRQRSQTAVSALADVGERMVREKLKVWIYPEGTRNDNGD 773
RELLFLGPVGLIMYLGGV FINRQRS TA++ +AD+GERMVRE N
Sbjct: 121 RELLFLGPVGLIMYLGGVFFINRQRSSTAMTVMADLGERMVRE--------------NVP 166
Query: 774 LLPFKKGAFYLAIQAQXXXXXXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVPTRGLTVAD 953
++P +F +++ K FTSGT+ V+VL+A+PT GLT AD
Sbjct: 167 IVPVVYSSF------------------SSFYNTKKKFFTSGTVTVQVLEAIPTSGLTAAD 208
Query: 954 IPRLMDTCYQAMRTSFFSISKTPQENGAPAG 1046
+P L+DTC++AMRT+F ISKTPQENGA AG
Sbjct: 209 VPALVDTCHRAMRTTFLHISKTPQENGATAG 239
>ref|NP_006402.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha [Homo sapiens].
Length = 283
Score = 210 bits (534), Expect = 2e-54
Identities = 112/275 (40%), Positives = 160/275 (58%), Gaps = 8/275 (2%)
Frame = +3
Query: 234 MDVWP--WLSAAXXXXXXXXXL------SRSAKFYAKIGLYCALCFTVSIVAAATCLLRH 389
MD+WP W+ L S SAK++ K+ Y ++++A C +R
Sbjct: 1 MDLWPGAWMLLLLLFLLLLFLLPTLWFCSPSAKYFFKMAFYNGWILFLAVLAIPVCAVR- 59
Query: 390 GGRTVENMSIISWFVRSFKYLYGLRFEIKGRQRLDEDRSCVIISNHQSILDMMGLMEALP 569
GR VENM I+ + KYLYG+R E++G + V++SNHQS LD++G+ME LP
Sbjct: 60 -GRNVENMKILRLMLLHIKYLYGIRVEVRGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLP 118
Query: 570 DRCVQIAKRELLFLGPVGLIMYLGGVIFINRQRSQTAVSALADVGERMVREKLKVWIYPE 749
RCV IAKRELL+ G GL +L GVIFI+R+R+ A+S +++V + ++ + ++VW++PE
Sbjct: 119 GRCVPIAKRELLWAGSAGLACWLAGVIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPE 178
Query: 750 GTRNDNGDLLPFKKGAFYLAIQAQXXXXXXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVP 929
GTRN NG +LPFK+GAF+LA+QAQ + + FTSG +V VL VP
Sbjct: 179 GTRNHNGSMLPFKRGAFHLAVQAQVPIVPIVMSSYQDFYCKKERRFTSGQCQVRVLPPVP 238
Query: 930 TRGLTVADIPRLMDTCYQAMRTSFFSISKTPQENG 1034
T GLT D+P L D +M T F IS + G
Sbjct: 239 TEGLTPDDVPALADRVRHSMLTVFREISTDGRGGG 273
>ref|NP_116130.2| 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha [Homo sapiens].
Length = 283
Score = 210 bits (534), Expect = 2e-54
Identities = 112/275 (40%), Positives = 160/275 (58%), Gaps = 8/275 (2%)
Frame = +3
Query: 234 MDVWP--WLSAAXXXXXXXXXL------SRSAKFYAKIGLYCALCFTVSIVAAATCLLRH 389
MD+WP W+ L S SAK++ K+ Y ++++A C +R
Sbjct: 1 MDLWPGAWMLLLLLFLLLLFLLPTLWFCSPSAKYFFKMAFYNGWILFLAVLAIPVCAVR- 59
Query: 390 GGRTVENMSIISWFVRSFKYLYGLRFEIKGRQRLDEDRSCVIISNHQSILDMMGLMEALP 569
GR VENM I+ + KYLYG+R E++G + V++SNHQS LD++G+ME LP
Sbjct: 60 -GRNVENMKILRLMLLHIKYLYGIRVEVRGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLP 118
Query: 570 DRCVQIAKRELLFLGPVGLIMYLGGVIFINRQRSQTAVSALADVGERMVREKLKVWIYPE 749
RCV IAKRELL+ G GL +L GVIFI+R+R+ A+S +++V + ++ + ++VW++PE
Sbjct: 119 GRCVPIAKRELLWAGSAGLACWLAGVIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPE 178
Query: 750 GTRNDNGDLLPFKKGAFYLAIQAQXXXXXXXXXXXXXXXDSRTKLFTSGTIKVEVLDAVP 929
GTRN NG +LPFK+GAF+LA+QAQ + + FTSG +V VL VP
Sbjct: 179 GTRNHNGSMLPFKRGAFHLAVQAQVPIVPIVMSSYQDFYCKKERRFTSGQCQVRVLPPVP 238
Query: 930 TRGLTVADIPRLMDTCYQAMRTSFFSISKTPQENG 1034
T GLT D+P L D +M T F IS + G
Sbjct: 239 TEGLTPDDVPALADRVRHSMLTVFREISTDGRGGG 273
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,114,490
Number of extensions: 972586
Number of successful extensions: 7307
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7070
Number of HSP's successfully gapped: 5
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013315
(1130 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 396 e-107
>Sscrofa_Chr01
|| Length = 315321322
Score = 396 bits (200), Expect = e-107
Identities = 231/240 (96%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 892 caggaaccatcaaggtggaggtgctggatgccgtccccacccgcggcctcactgtcgccg 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313737386 caggaaccatcaaggtggaggtgctggatgccgtccccacccgcggcctcactgtcgccg 313737327
Query: 952 acatccccaggctcatggacacctgctaccaggccatgaggaccagcttcttcagcatat 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313737326 acatccccaggctcatggacacctgctaccaggccatgaggaccagcttcttcagcatat 313737267
Query: 1012 ccaagaccccccaggaaaacggggcccccgcagggcccgctgccca-ccagcccattatt 1070
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |
Sbjct: 313737266 ccaagaccccccaggagaacggggcccccgcagggcccgctgcccagccagcccagtagt 313737207
Query: 1071 ggaggccgggcgggggccgcaggacctgggagacgatgaacaaaaacctccgcccacctc 1130
|||||||||||||||| ||||||||||||||||||||| ||| | ||||| |||||||||
Sbjct: 313737206 ggaggccgggcggggggcgcaggacctgggagacgatggacagagacctctgcccacctc 313737147
Score = 351 bits (177), Expect = 5e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 549 ggcctcatggaggccctgcccgatcgctgtgtgcagatcgccaagcgggagctgcttttc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313739997 ggcctcatggaggccctgcccgatcgctgtgtgcagatcgccaagcgggagctgcttttc 313739938
Query: 609 ctggggcccgtgggcctgatcatgtacctgggaggcgtcatattcatcaacaggcagcgc 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313739937 ctggggcccgtgggcctgatcatgtacctgggaggcgtcatattcatcaacaggcagcgc 313739878
Query: 669 tcccagacggccgtgagcgccttggccgacgtgggcgagcgcatggtcagggagaag 725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313739877 tcccagacggccgtgagcgccttggccgacgtgggcgagcgcatggtcagggagaag 313739821
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 414 agcatcatcagctggttcgtccgctccttcaagtacttatacggccttcgctttgagata 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313740535 agcatcatcagctggttcgtccgctccttcaagtacttatacggccttcgctttgagata 313740476
Query: 474 aagggccgccagcggctggacgaggaccgctcgtgcgtcatcatctccaaccaccagagc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313740475 aagggccgccagcggctggacgaggaccgctcgtgcgtcatcatctccaaccaccagagc 313740416
Query: 534 atcctggacatgatggg 550
|||||||||||||||||
Sbjct: 313740415 atcctggacatgatggg 313740399
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 724 agctcaaagtgtggatctaccccgagggcacacggaatgacaacggggacctgctgccct 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313739644 agctcaaagtgtggatctaccccgagggcacacggaatgacaacggggacctgctgccct 313739585
Query: 784 tcaagaaaggtgccttctacctggcgatc 812
|||||||||||||||||||||||||||||
Sbjct: 313739584 tcaagaaaggtgccttctacctggcgatc 313739556
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 819 caggtgcccatcgtgcccgtggtgtactccagcttctcctccttctacgactccaggacg 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313738082 caggtgcccatcgtgcccgtggtgtactccagcttctcctccttctacgactccaggacg 313738023
Query: 879 aagctcttcacctcagg 895
|||||||||||||||||
Sbjct: 313738022 aagctcttcacctcagg 313738006
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,104,245
Number of extensions: 130
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 5
Length of query: 1130
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1109
Effective length of database: 2,808,413,156
Effective search space: 3114530190004
Effective search space used: 3114530190004
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)