Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013316
(923 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002686644.1| PREDICTED: colony stimulating factor 2 recep... 354 2e-99
Alignment gi|XP_002686633.1| PREDICTED: colony stimulating factor 2 recep... 96 3e-20
Alignment gi|XP_002697013.1| PREDICTED: interleukin 5 receptor, alpha-lik... 72 5e-13
Alignment gi|XP_872862.4| PREDICTED: interleukin 5 receptor, alpha-like [... 72 5e-13
Alignment gi|NP_001095766.1| interleukin-13 receptor subunit alpha-2 [Bos... 64 1e-10
Alignment gi|XP_002699641.1| PREDICTED: interleukin 13 receptor, alpha 2-... 64 1e-10
Alignment gi|XP_002684050.1| PREDICTED: interleukin 3 receptor, alpha-lik... 58 1e-08
>ref|XP_002686644.1| PREDICTED: colony stimulating factor 2 receptor alpha chain-like
[Bos taurus].
Length = 348
Score = 354 bits (909), Expect(2) = 2e-99
Identities = 162/224 (72%), Positives = 198/224 (88%)
Frame = +1
Query: 172 REHQDLPALDQNASLHVTFDPKTMTLRWDCRENITSGECLMTMHKENSRVKKGIKGKECR 351
+E QDLP + NASL+V FDP+T L WDCREN +SGEC++ +HKE +KK +K EC+
Sbjct: 11 QEQQDLPTVKPNASLNVKFDPQTTKLTWDCRENASSGECVL-IHKEKGPIKKKVKDSECQ 69
Query: 352 CTFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAK 531
CTFQD+SLHGGV+ TV+V++ QR +SE LVY+NPG EGTAAQNFSC+IY+ADFMNC+WAK
Sbjct: 70 CTFQDYSLHGGVTLTVEVHVNQRRLSEMLVYTNPGREGTAAQNFSCVIYDADFMNCSWAK 129
Query: 532 GQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQK 711
G+AAP+D+QYFLYIR SKK+IERECPRYL DSGTHVGCHLQ++SGL+ Y+YFLVNGTSQ+
Sbjct: 130 GRAAPDDVQYFLYIR-SKKRIERECPRYLKDSGTHVGCHLQDLSGLTSYNYFLVNGTSQE 188
Query: 712 SGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRK 843
+GIQFFDSVL+LKEIE+YNPP+NITV CNESHC I+WEKPRTR+
Sbjct: 189 TGIQFFDSVLLLKEIEQYNPPDNITVQCNESHCLIRWEKPRTRQ 232
Score = 27.3 bits (59), Expect(2) = 2e-99
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3
Query: 852 DREFQYQLDIQRQ 890
+REFQYQLDIQR+
Sbjct: 236 NREFQYQLDIQRR 248
>ref|XP_002686633.1| PREDICTED: colony stimulating factor 2 receptor alpha chain-like
[Bos taurus].
Length = 300
Score = 96.3 bits (238), Expect = 3e-20
Identities = 55/114 (48%), Positives = 67/114 (58%), Gaps = 4/114 (3%)
Frame = +1
Query: 511 MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDS-GTHVGCHLQNI-SGLSFYSY 684
MNC+W +G AAP D+QY LY S EC Y+ DS GT VGCH + G + Y
Sbjct: 1 MNCSWTRGPAAPADVQYQLYSWTSLHGNVSECSHYVLDSAGTRVGCHFDELGEGHTTDDY 60
Query: 685 -FLVNGTSQKSGIQFFDSVLML-KEIERYNPPNNITVYCNESHCFIQWEKPRTR 840
FLVNGTS S IQF DS + +E+YNPP N+TV N SH I+W+ P R
Sbjct: 61 FFLVNGTSSDSDIQFLDSPSVNGPSLEKYNPPANVTVQDNVSHFVIRWDAPAMR 114
>ref|XP_002697013.1| PREDICTED: interleukin 5 receptor, alpha-like [Bos taurus].
Length = 556
Score = 72.4 bits (176), Expect = 5e-13
Identities = 60/184 (32%), Positives = 84/184 (45%), Gaps = 9/184 (4%)
Frame = +1
Query: 325 KGIKGKECRCTFQDHSLHGG--VSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIY 498
KG + DHSL VS +K IG T + + T A N++ L
Sbjct: 230 KGFSASVRTVPWNDHSLQASSWVSAELKAPIGS---PGTEIVNLTCTTNTKADNYTHLRP 286
Query: 499 NADFMNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDS-GTHVGCHLQ----NIS 663
++CTW G+ AP+D QYFLY R + IE EC Y D +V C N
Sbjct: 287 YQVSLHCTWLVGKDAPDDTQYFLYYR-YRSWIE-ECQEYSKDVLQRNVACWFPRTFINSK 344
Query: 664 GLSFYSYFLVNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTR- 840
G + + + VNG+S+ + I+ FD + L I+R N P N+T + I WEKP +
Sbjct: 345 GRDYLAVY-VNGSSKGAAIKPFDQLFALHAIDRVNSPANVTAEIKGTCLSIHWEKPVSAF 403
Query: 841 -KHC 849
HC
Sbjct: 404 PSHC 407
>ref|XP_872862.4| PREDICTED: interleukin 5 receptor, alpha-like [Bos taurus].
Length = 641
Score = 72.4 bits (176), Expect = 5e-13
Identities = 60/184 (32%), Positives = 84/184 (45%), Gaps = 9/184 (4%)
Frame = +1
Query: 325 KGIKGKECRCTFQDHSLHGG--VSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIY 498
KG + DHSL VS +K IG T + + T A N++ L
Sbjct: 230 KGFSASVRTVPWNDHSLQASSWVSAELKAPIGS---PGTEIVNLTCTTNTKADNYTHLRP 286
Query: 499 NADFMNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDS-GTHVGCHLQ----NIS 663
++CTW G+ AP+D QYFLY R + IE EC Y D +V C N
Sbjct: 287 YQVSLHCTWLVGKDAPDDTQYFLYYR-YRSWIE-ECQEYSKDVLQRNVACWFPRTFINSK 344
Query: 664 GLSFYSYFLVNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTR- 840
G + + + VNG+S+ + I+ FD + L I+R N P N+T + I WEKP +
Sbjct: 345 GRDYLAVY-VNGSSKGAAIKPFDQLFALHAIDRVNSPANVTAEIKGTCLSIHWEKPVSAF 403
Query: 841 -KHC 849
HC
Sbjct: 404 PSHC 407
>ref|NP_001095766.1| interleukin-13 receptor subunit alpha-2 [Bos taurus].
Length = 380
Score = 64.3 bits (155), Expect = 1e-10
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Frame = +1
Query: 421 WISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKKKIER 600
W T S+ G T Q+ C+ YN ++ C+W G A D Y LY
Sbjct: 123 WSEATYWISSQGNLDTKIQDMDCVYYNWQYLLCSWKPGMGAHLDSNYRLYYWYEGLDHVL 182
Query: 601 ECPRYLSDSGTHVGCHLQNISGLSFYSYFL-VNGTSQKSGIQFFDSVLMLKEIERYNPPN 777
EC Y+ G ++GC + + +++ VNG+S+ I+ + L+ I + PP+
Sbjct: 183 ECIDYIQAKGKNIGCRFPYLESSDYKDFYICVNGSSESQLIRPSYFIFQLQNIVKPLPPD 242
Query: 778 NITVYCNESHCFIQWEKPR 834
+++ S ++W PR
Sbjct: 243 YLSLTMKNSEVNLKWSIPR 261
>ref|XP_002699641.1| PREDICTED: interleukin 13 receptor, alpha 2-like [Bos taurus].
Length = 380
Score = 64.3 bits (155), Expect = 1e-10
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Frame = +1
Query: 421 WISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKKKIER 600
W T S+ G T Q+ C+ YN ++ C+W G A D Y LY
Sbjct: 123 WSEATYWISSQGNLDTKIQDMDCVYYNWQYLLCSWKPGMGAHLDSNYRLYYWYEGLDHVL 182
Query: 601 ECPRYLSDSGTHVGCHLQNISGLSFYSYFL-VNGTSQKSGIQFFDSVLMLKEIERYNPPN 777
EC Y+ G ++GC + + +++ VNG+S+ I+ + L+ I + PP+
Sbjct: 183 ECIDYIQAKGKNIGCRFPYLESSDYKDFYICVNGSSESQLIRPSYFIFQLQNIVKPLPPD 242
Query: 778 NITVYCNESHCFIQWEKPR 834
+++ S ++W PR
Sbjct: 243 YLSLTMKNSEVNLKWSIPR 261
>ref|XP_002684050.1| PREDICTED: interleukin 3 receptor, alpha-like, partial [Bos
taurus].
Length = 427
Score = 58.2 bits (139), Expect = 1e-08
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Frame = +1
Query: 217 HVTFDPKTMTLRWDCRENITSGECLMTMHKENSRV-KKGIKGKECRCTFQDHSLHGGVSF 393
++ DP+ L WD N++ C + NS++ KK I+ + C+ D S ++
Sbjct: 10 NLRIDPERKRLAWDQHGNVSEIGCYV-----NSKILKKAIE--KPYCSLGDLSCEVK-NY 61
Query: 394 TVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYI 573
TVKV GQ + S + Y G AA N +C +++ D ++C+WA G+ AP ++QY Y+
Sbjct: 62 TVKVIKGQPF-SAWIQYPKQGNPLAAADNLTCRVHDVDQLSCSWAVGEEAPANVQYHFYL 120
Query: 574 R 576
+
Sbjct: 121 K 121
Score = 49.7 bits (117), Expect = 4e-06
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +1
Query: 604 CPRYLSDS-GTHVGCHLQNIS---GLSFYSYFLVNGTSQKSGIQFFDSVLMLKEIERYNP 771
CP+Y+ + G +V CH ++S FLVNGTS S I L+EIE
Sbjct: 199 CPKYMQNQQGVNVQCHFDSLSLQPERQTLFRFLVNGTSGGSKIPCRQMTHRLEEIEILAA 258
Query: 772 PNNITVYCNESHCFIQWE 825
PN +CNE++ F++WE
Sbjct: 259 PNITKKWCNENYSFMEWE 276
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,318,294
Number of extensions: 1162129
Number of successful extensions: 5100
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5029
Number of HSP's successfully gapped: 9
Length of query: 307
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 205
Effective length of database: 14,306,398
Effective search space: 2932811590
Effective search space used: 2932811590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013316
(923 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851588.1| PREDICTED: similar to Granulocyte-macrophage co... 305 7e-86
Alignment gi|XP_851626.1| PREDICTED: similar to interleukin 3 receptor, a... 124 2e-28
Alignment gi|XP_533759.2| PREDICTED: similar to interleukin 5 receptor, a... 75 1e-13
Alignment gi|NP_001003075.1| interleukin-13 receptor subunit alpha-2 prec... 59 5e-09
Alignment gi|NP_001003201.1| cytokine receptor common subunit gamma precu... 51 2e-06
>ref|XP_851588.1| PREDICTED: similar to Granulocyte-macrophage colony-stimulating
factor receptor alpha chain precursor (GM-CSF-R-alpha)
(GMR) (CDw116) (CD116 antigen) [Canis familiaris].
Length = 495
Score = 305 bits (782), Expect(2) = 7e-86
Identities = 143/219 (65%), Positives = 175/219 (79%)
Frame = +1
Query: 184 DLPALDQNASLHVTFDPKTMTLRWDCRENITSGECLMTMHKENSRVKKGIKGKECRCTFQ 363
DL ++ SL++ FD + M L WDC+EN T EC+M +HKE ++ +K EC C F
Sbjct: 12 DLTTVEGFPSLNMKFDSRRMELSWDCKENTTYLECVM-IHKEKGPIEIMLKENECHCKFP 70
Query: 364 DHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAA 543
D+SLH GV+F VKVN QR I ETLVY+N G +GTAAQNFSC IYNA+FMNCTWAKGQAA
Sbjct: 71 DYSLHEGVTFMVKVNSIQRPIPETLVYTNSGGKGTAAQNFSCFIYNANFMNCTWAKGQAA 130
Query: 544 PNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKSGIQ 723
P+D+QYFLYIRD K + ERECP YL DSGTHVGCHL+++SGL++Y+YFLVNGTSQ++GIQ
Sbjct: 131 PDDVQYFLYIRDLKYRRERECPHYLEDSGTHVGCHLEDLSGLAYYNYFLVNGTSQRTGIQ 190
Query: 724 FFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTR 840
FFDS+L K+IE Y+PPNNI+V+CN SHC IQWEKP TR
Sbjct: 191 FFDSILYWKKIEIYSPPNNISVHCNVSHCLIQWEKPVTR 229
Score = 31.2 bits (69), Expect(2) = 7e-86
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +3
Query: 843 TLSDREFQYQLDIQRQSNI 899
TLS+REF+YQLDIQR ++
Sbjct: 231 TLSNREFKYQLDIQRLDSV 249
>ref|XP_851626.1| PREDICTED: similar to interleukin 3 receptor, alpha precursor
[Canis familiaris].
Length = 639
Score = 124 bits (310), Expect = 2e-28
Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 4/207 (1%)
Frame = +1
Query: 217 HVTFDPKTMTLRWDCRENITSGECLMTMHKENSRVKKGIKGKECRCTFQDHSLHGGVSFT 396
++ +P + L WD N++ +C + + + K I + C+ F L +FT
Sbjct: 227 NLRMEPGSRRLTWDLSGNVSEIKCFIN----SKYITKAIDSRYCQ--FYVLPLCEVKNFT 280
Query: 397 VKVNIGQRWISETLVYSNPGVEG---TAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFL 567
+ V + S L Y G EG AA+ C +++ DF+ C+W G+AAP D+QY L
Sbjct: 281 ISVKQDPPF-STGLQYVPRGAEGKPAAAARGLDCWVHDVDFLTCSWEVGRAAPGDVQYRL 339
Query: 568 YIRDSKKKIERECPRY-LSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKSGIQFFDSVLM 744
Y RD K E+ECPRY ++ G HV C ++S L + F VNGTS++SGI D +
Sbjct: 340 YWRDLKAYREQECPRYEANNRGVHVRCRFDDVSRLQRHIQFWVNGTSRRSGIPCSDLCVE 399
Query: 745 LKEIERYNPPNNITVYCNESHCFIQWE 825
L EIER +PP +IT CN+S+ ++W+
Sbjct: 400 LPEIERLSPP-HITATCNKSYSMMEWK 425
>ref|XP_533759.2| PREDICTED: similar to interleukin 5 receptor, alpha isoform 1
precursor [Canis familiaris].
Length = 415
Score = 74.7 bits (182), Expect = 1e-13
Identities = 64/219 (29%), Positives = 93/219 (42%), Gaps = 18/219 (8%)
Frame = +1
Query: 229 DPKTMTLRWDCRENITSGECLMTMHKENSRVK---KGIKGKECRCTFQDHSLHGGVSFTV 399
+P + L + R N E T + E+ V +G + HSL
Sbjct: 52 EPNNVELGYHVRINAPQEEDYETRNTESKLVTVLHQGFSASVQTILWDGHSL-------- 103
Query: 400 KVNIGQRWISETLVYSNPGVEGTAAQNFSCL---IYNAD--------FMNCTWAKGQAAP 546
+ W+S L + PG GT+ N +C ++N ++CTW G+ AP
Sbjct: 104 ---LPSDWVSAELK-APPGSPGTSIVNLTCTTNTVFNNSNPLRPYQVSLHCTWLVGKDAP 159
Query: 547 NDIQYFLYIRDSKKKIERECPRYLSDS-GTHVGCHLQNISGLSFYSYFL---VNGTSQKS 714
D QYFLY R + EC Y D+ ++ C S S L V G+S+ +
Sbjct: 160 EDTQYFLYYRYGS--MTEECQEYRKDTLKRNIACWFPRTFISSRGSDSLAVQVKGSSKHT 217
Query: 715 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKP 831
I+ FD + L EI+R NPP N+T S IQW+KP
Sbjct: 218 IIKPFDQLFALHEIDRINPPENVTAVIEGSGLSIQWKKP 256
>ref|NP_001003075.1| interleukin-13 receptor subunit alpha-2 precursor [Canis lupus
familiaris].
Length = 386
Score = 59.3 bits (142), Expect = 5e-09
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Frame = +1
Query: 421 WISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKKKIER 600
W T S G T Q+ C+ YN ++ C+W G D Y L+
Sbjct: 122 WAETTYWTSPQGNRETKIQDMDCVYYNWQYLVCSWKPGMGVHFDTNYQLFYWYEGLDHSA 181
Query: 601 ECPRYLSDSGTHVGCHLQNISGLSFYSYFL-VNGTSQKSGIQFFDSVLMLKEIERYNPPN 777
EC Y+ +G ++GC + + +++ VNG+S+ I+ + L+ I + PP+
Sbjct: 182 ECTDYIKVNGKNMGCRFPYLESSDYKDFYICVNGSSESQPIRPSYFIFQLQNIVKPMPPD 241
Query: 778 NITVYC-NESHCFIQWEKPR 834
+++ N ++W P+
Sbjct: 242 YLSLTVKNSEEINLKWNMPK 261
>ref|NP_001003201.1| cytokine receptor common subunit gamma precursor [Canis lupus
familiaris].
Length = 373
Score = 50.8 bits (120), Expect = 2e-06
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Frame = +1
Query: 427 SETLVYSNPGVEGTAAQNFSCLIYNADFMNCTW-AKGQAAPNDIQYFLYIRDSKKKIERE 603
SETL V C ++N ++MNCTW + + P ++ + ++S +E
Sbjct: 47 SETL-----SVSSLPLPEVQCFVFNVEYMNCTWNSSSEPRPTNLTLHYWYKNSNDDKVQE 101
Query: 604 CPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKSGIQFFDSVLMLKEIERYNPPNNI 783
C YL GC LQ + Y F+V + + L L+ + P N+
Sbjct: 102 CGHYLFSREVTAGCWLQK-EEIHLYETFVVQLRDPREPRRQSTQKLKLQNLVIPWAPENL 160
Query: 784 TVY-CNESHCFIQWEKPRTRKHCL 852
T++ +ES + W R HCL
Sbjct: 161 TLHNLSESQLELSWSN-RHLDHCL 183
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,013,975
Number of extensions: 1193499
Number of successful extensions: 5480
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5401
Number of HSP's successfully gapped: 6
Length of query: 307
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 205
Effective length of database: 15,474,232
Effective search space: 3172217560
Effective search space used: 3172217560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013316
(923 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362122.1| PREDICTED: granulocyte-macrophage colony-sti... 365 e-112
Alignment gi|XP_003358548.1| PREDICTED: interleukin-5 receptor subunit al... 76 3e-14
Alignment gi|NP_001230563.1| interleukin-13 receptor subunit alpha-2 [Sus... 60 2e-09
>ref|XP_003362122.1| PREDICTED: granulocyte-macrophage colony-stimulating factor
receptor subunit alpha-like, partial [Sus scrofa].
Length = 260
Score = 365 bits (938), Expect(2) = e-112
Identities = 171/171 (100%), Positives = 171/171 (100%)
Frame = +1
Query: 331 IKGKECRCTFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADF 510
IKGKECRCTFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADF
Sbjct: 1 IKGKECRCTFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADF 60
Query: 511 MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFL 690
MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFL
Sbjct: 61 MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFL 120
Query: 691 VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRK 843
VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRK
Sbjct: 121 VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRK 171
Score = 58.5 bits (140), Expect(2) = e-112
Identities = 29/33 (87%), Positives = 30/33 (90%)
Frame = +3
Query: 825 KAQDPKTLSDREFQYQLDIQRQSNIRRSENQLI 923
K + KTLSDREFQYQLDIQRQSNIRRSENQLI
Sbjct: 166 KPRTRKTLSDREFQYQLDIQRQSNIRRSENQLI 198
>ref|XP_003358548.1| PREDICTED: interleukin-5 receptor subunit alpha [Sus scrofa].
Length = 436
Score = 75.9 bits (185), Expect = 3e-14
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Frame = +1
Query: 373 LHGGVSFTVKVNI-------GQRWISETLVYSNPGVEGTAAQNFSCLIYNADF------- 510
LH G S +V+ + W+S L PG GT+ N +C +
Sbjct: 106 LHKGFSASVRTILWNNHSFPASSWVSAELKVP-PGSPGTSIVNLTCTTNTEAYNYTHERP 164
Query: 511 ----MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGT-HVGCHLQ----NIS 663
++CTW G+ AP D QYFLY R + EC Y D+ ++ C N
Sbjct: 165 YQVSLHCTWLVGKDAPEDTQYFLYYRYGS--VTEECREYSKDTQQRNIACRFPRTVINSK 222
Query: 664 GLSFYSYFLVNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKP 831
G + + + VNG+S++ I+ FD + L I+R N P N+T + IQWEKP
Sbjct: 223 GRDWLAVY-VNGSSKEEAIKPFDQLFALHAIDRVNSPVNVTAEIEGTCLSIQWEKP 277
>ref|NP_001230563.1| interleukin-13 receptor subunit alpha-2 [Sus scrofa].
Length = 387
Score = 59.7 bits (143), Expect = 2e-09
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 6/206 (2%)
Frame = +1
Query: 235 KTMTLRWDCRENITSGECLMTMHKENSRVKKGI---KGKECRCTFQDHSLHGGVSFTVKV 405
K T+ ++ + E T+ +N K G KG E + H+L G T
Sbjct: 63 KECTVEYELKYRNIDSESWKTIITKNLHYKDGFDLNKGVEAKI----HTLLPG-QCTNGS 117
Query: 406 NIGQRWISETLVYSNP-GVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDS 582
+ W SET ++ P G T Q+ C+ YN ++ C+W G D Y L+
Sbjct: 118 EVQSSW-SETTYWTLPQGNLETKIQDMDCVYYNWQYLLCSWKPGMGVHFDTNYNLFYWYE 176
Query: 583 KKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFL-VNGTSQKSGIQFFDSVLMLKEIE 759
+C Y+ +G + GC + + +++ VNG+S+ I+ + L+ I
Sbjct: 177 GLDHALQCADYIKTNGKNTGCRFPYLESSDYKDFYICVNGSSESQSIRPSYFIFQLQNIV 236
Query: 760 RYNPPNNITVYC-NESHCFIQWEKPR 834
+ PP+ +++ N ++W PR
Sbjct: 237 KPLPPDYLSLTVKNSEEVNLKWSIPR 262
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,339,034
Number of extensions: 745668
Number of successful extensions: 3143
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3123
Number of HSP's successfully gapped: 4
Length of query: 307
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 208
Effective length of database: 8,879,129
Effective search space: 1846858832
Effective search space used: 1846858832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013316
(923 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034100.2| granulocyte-macrophage colony-stimulating facto... 128 7e-30
Alignment gi|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292... 92 4e-19
Alignment gi|NP_032396.1| interleukin-5 receptor subunit alpha precursor ... 76 3e-14
Alignment gi|NP_032382.1| interleukin-13 receptor subunit alpha-2 precurs... 70 2e-12
Alignment gi|NP_032395.1| interleukin-3 receptor subunit alpha precursor ... 64 2e-10
Alignment gi|NP_038591.1| cytokine receptor common subunit gamma precurso... 48 9e-06
>ref|NP_034100.2| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha precursor [Mus musculus].
Length = 388
Score = 128 bits (321), Expect = 7e-30
Identities = 73/219 (33%), Positives = 112/219 (51%), Gaps = 6/219 (2%)
Frame = +1
Query: 199 DQNASLHVTFDPKTMTLRWDCRE---NITSGECLMTMHKENSRVKKGIKGKECRCTFQDH 369
D ++L++TFDP T TL W C N+T C +T + + + + CRC F+
Sbjct: 37 DAGSALNLTFDPWTRTLTWACDTAAGNVTVTSCTVTSREAG--IHRRVSPFGCRCWFRRM 94
Query: 370 -SLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAP 546
+LH GV+ V +G L + N G G+ A+N +C I A F++C W +G AAP
Sbjct: 95 MALHHGVTLDVNGTVGGAAAHWRLSFVNEGAAGSGAENLTCEIRAARFLSCAWREGPAAP 154
Query: 547 NDIQYFLYIRDSKKKIERECPRYLSDSGTHV--GCHLQNISGLSFYSYFLVNGTSQKSGI 720
D++Y L + +S + R ++D G V C ++S L +Y +V G S +
Sbjct: 155 ADVRYSLRVLNSTG---HDVARCMADPGDDVITQCIANDLSLLGSEAYLVVTGRSGAGPV 211
Query: 721 QFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRT 837
+F D V+ K +ER PP ++T CN SHC + W P T
Sbjct: 212 RFLDDVVATKALERLGPPRDVTASCNSSHCTVSWAPPST 250
>ref|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292 [Mus musculus].
Length = 419
Score = 92.4 bits (228), Expect = 4e-19
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Frame = +1
Query: 454 GVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGT 633
G G+ A+N +C I A F++C W +G AAP D++Y L + +S + R ++D G
Sbjct: 228 GAAGSGAENLTCEIRAARFLSCAWREGPAAPADVRYSLRVLNSTG---HDVARCMADPGD 284
Query: 634 HV--GCHLQNISGLSFYSYFLVNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESH 807
V C ++S L +Y +V G S ++F D V+ K +ER +PP ++T CN SH
Sbjct: 285 DVITQCIANDLSLLGSEAYLVVTGRSGAGPVRFLDDVVATKALERLDPPRDVTASCNSSH 344
Query: 808 CFIQWEKPRT 837
C + W P T
Sbjct: 345 CTVSWAPPST 354
>ref|NP_032396.1| interleukin-5 receptor subunit alpha precursor [Mus musculus].
Length = 415
Score = 76.3 bits (186), Expect = 3e-14
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 24/183 (13%)
Frame = +1
Query: 373 LHGGVSFTVKV-------NIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADF------- 510
LH G + +V+ + W+S L + PG GT+ N +C +
Sbjct: 87 LHEGFAASVRTILKSSHTTLASSWVSAELK-APPGSPGTSVTNLTCTTHTVVSSHTHLRP 145
Query: 511 ----MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDS-GTHVGCHLQN--ISGL 669
+ CTW G+ AP D QYFLY R + +C Y D+ + C I+
Sbjct: 146 YQVSLRCTWLVGKDAPEDTQYFLYYRFGV--LTEKCQEYSRDALNRNTACWFPRTFINSK 203
Query: 670 SFYSYFL-VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTR-- 840
F + +NG+S+++ I+ FD + I++ NPP N+TV + +IQWEKP +
Sbjct: 204 GFEQLAVHINGSSKRAAIKPFDQLFSPLAIDQVNPPRNVTVEIESNSLYIQWEKPLSAFP 263
Query: 841 KHC 849
HC
Sbjct: 264 DHC 266
>ref|NP_032382.1| interleukin-13 receptor subunit alpha-2 precursor [Mus musculus].
Length = 383
Score = 70.1 bits (170), Expect = 2e-12
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Frame = +1
Query: 298 MHKENSRVKKGIKGKECRCTFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQ 477
++K+ + KGI+GK R +H +G + WI + S+ G T Q
Sbjct: 84 IYKDGFDLNKGIEGK-IRTHLSEHCTNGS-------EVQSPWIEASYGISDEGSLETKIQ 135
Query: 478 NFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQN 657
+ C+ YN ++ C+W G+ +D Y ++ +C YL +VGC L N
Sbjct: 136 DMKCIYYNWQYLVCSWKPGKTVYSDTNYTMFFWYEGLDHALQCADYLQHDEKNVGCKLSN 195
Query: 658 ISGLSFYSYFL-VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYC-NESHCFIQWEKP 831
+ + +F+ VNG+S+ I+ +V L+ I + PP + + N ++W P
Sbjct: 196 LDSSDYKDFFICVNGSSKLEPIRSSYTVFQLQNIVKPLPPEFLHISVENSIDIRMKWSTP 255
>ref|NP_032395.1| interleukin-3 receptor subunit alpha precursor [Mus musculus].
Length = 396
Score = 63.9 bits (154), Expect = 2e-10
Identities = 65/240 (27%), Positives = 97/240 (40%), Gaps = 24/240 (10%)
Frame = +1
Query: 211 SLHVTFDPKTMTLRWDCRE--NITSGECLMTMHKENSRVKKGIKGKECRCTFQDHSLHGG 384
+LH+ DP TL WD +IT+G G+ RC+FQ SL
Sbjct: 36 NLHI--DPAHYTLSWDPAPGADITTGAFCRKGRDIFVWADPGL----ARCSFQSLSLCHV 89
Query: 385 VSFTVKVNIGQRWISETLVY--SNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQ 558
+FTV + R ++ ++ + + G AAQ+ C ++ ++C W +G A D+
Sbjct: 90 TNFTVFLG-KDRAVAGSIQFPPDDDGDHEAAAQDLRCWVHEGQ-LSCQWERGPKATGDVH 147
Query: 559 YFLYIRDSK--KKIERECPRYLS---------DSGTHVGCHLQ---------NISGLSFY 678
Y ++ RD + RECP Y S G H GC L N L
Sbjct: 148 YRMFWRDVRLGPAHNRECPHYHSLDVNTAGPAPHGGHEGCTLDLDTVLGSTPNSPDLVPQ 207
Query: 679 SYFLVNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKHCLTG 858
VNG+ + + D+ + L+ E PP +TV CN S +W H L G
Sbjct: 208 VTITVNGSGRAGPVPCMDNTVDLQRAEVLAPP-TLTVECNGSEAHARWVARNRFHHGLLG 266
>ref|NP_038591.1| cytokine receptor common subunit gamma precursor [Mus musculus].
Length = 369
Score = 48.1 bits (113), Expect = 9e-06
Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 15/184 (8%)
Frame = +1
Query: 373 LHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNF-----SCLIYNADFMNCTW---A 528
L G S V ++ I L+ ++ E +A C ++N ++MNCTW +
Sbjct: 19 LRAGWSSKVLMSSANEDIKADLILTSTAPEHLSAPTLPLPEVQCFVFNIEYMNCTWNSSS 78
Query: 529 KGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQ 708
+ QA + Y + D+ +EC YL GC +Q + Y F+V
Sbjct: 79 EPQATNLTLHYRYKVSDN--NTFQECSHYLFSKEITSGCQIQK-EDIQLYQTFVVQLQDP 135
Query: 709 KSGIQFFDSVLMLKEIERYNPPNNITV-YCNESHCFIQWEKPRTRKHCL------TGSSS 867
+ + L L+ + P N+T+ +ES ++W+ ++ CL +
Sbjct: 136 QKPQRRAVQKLNLQNLVIPRAPENLTLSNLSESQLELRWKSRHIKERCLQYLVQYRSNRD 195
Query: 868 TSWT 879
SWT
Sbjct: 196 RSWT 199
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,118,630
Number of extensions: 981619
Number of successful extensions: 4104
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4078
Number of HSP's successfully gapped: 6
Length of query: 307
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 206
Effective length of database: 12,583,923
Effective search space: 2592288138
Effective search space used: 2592288138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013316
(923 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155003.1| granulocyte-macrophage colony-stimulating fa... 277 9e-75
Alignment gi|NP_001155002.1| granulocyte-macrophage colony-stimulating fa... 277 9e-75
Alignment gi|NP_001155001.1| granulocyte-macrophage colony-stimulating fa... 277 9e-75
Alignment gi|NP_758450.1| granulocyte-macrophage colony-stimulating facto... 277 9e-75
Alignment gi|NP_758449.1| granulocyte-macrophage colony-stimulating facto... 277 9e-75
Alignment gi|NP_758448.1| granulocyte-macrophage colony-stimulating facto... 277 9e-75
Alignment gi|NP_006131.2| granulocyte-macrophage colony-stimulating facto... 277 9e-75
Alignment gi|NP_758452.1| granulocyte-macrophage colony-stimulating facto... 233 2e-61
Alignment gi|NP_001155004.1| granulocyte-macrophage colony-stimulating fa... 169 4e-42
Alignment gi|NP_002174.1| interleukin-3 receptor subunit alpha precursor ... 110 1e-24
>ref|NP_001155003.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform g precursor [Homo sapiens].
Length = 410
Score = 277 bits (709), Expect = 9e-75
Identities = 127/221 (57%), Positives = 163/221 (73%)
Frame = +1
Query: 175 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENITSGECLMTMHKENSRVKKGIKGKECRC 354
E DL + +SL+V FD +TM L WDC+EN T +C +T K+N V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLT-DKKNRVVEPRLSNNECSC 81
Query: 355 TFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 534
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 535 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 714
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 715 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRT 837
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRT 242
>ref|NP_001155002.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform f precursor [Homo sapiens].
Length = 434
Score = 277 bits (709), Expect = 9e-75
Identities = 127/221 (57%), Positives = 163/221 (73%)
Frame = +1
Query: 175 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENITSGECLMTMHKENSRVKKGIKGKECRC 354
E DL + +SL+V FD +TM L WDC+EN T +C +T K+N V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLT-DKKNRVVEPRLSNNECSC 81
Query: 355 TFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 534
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 535 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 714
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 715 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRT 837
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRT 242
>ref|NP_001155001.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform a precursor [Homo sapiens].
Length = 400
Score = 277 bits (709), Expect = 9e-75
Identities = 127/221 (57%), Positives = 163/221 (73%)
Frame = +1
Query: 175 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENITSGECLMTMHKENSRVKKGIKGKECRC 354
E DL + +SL+V FD +TM L WDC+EN T +C +T K+N V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLT-DKKNRVVEPRLSNNECSC 81
Query: 355 TFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 534
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 535 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 714
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 715 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRT 837
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRT 242
>ref|NP_758450.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform c precursor [Homo sapiens].
Length = 333
Score = 277 bits (709), Expect = 9e-75
Identities = 127/221 (57%), Positives = 163/221 (73%)
Frame = +1
Query: 175 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENITSGECLMTMHKENSRVKKGIKGKECRC 354
E DL + +SL+V FD +TM L WDC+EN T +C +T K+N V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLT-DKKNRVVEPRLSNNECSC 81
Query: 355 TFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 534
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 535 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 714
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 715 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRT 837
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRT 242
>ref|NP_758449.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform b precursor [Homo sapiens].
Length = 377
Score = 277 bits (709), Expect = 9e-75
Identities = 127/221 (57%), Positives = 163/221 (73%)
Frame = +1
Query: 175 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENITSGECLMTMHKENSRVKKGIKGKECRC 354
E DL + +SL+V FD +TM L WDC+EN T +C +T K+N V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLT-DKKNRVVEPRLSNNECSC 81
Query: 355 TFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 534
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 535 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 714
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 715 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRT 837
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRT 242
>ref|NP_758448.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform a precursor [Homo sapiens].
Length = 400
Score = 277 bits (709), Expect = 9e-75
Identities = 127/221 (57%), Positives = 163/221 (73%)
Frame = +1
Query: 175 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENITSGECLMTMHKENSRVKKGIKGKECRC 354
E DL + +SL+V FD +TM L WDC+EN T +C +T K+N V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLT-DKKNRVVEPRLSNNECSC 81
Query: 355 TFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 534
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 535 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 714
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 715 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRT 837
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRT 242
>ref|NP_006131.2| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform a precursor [Homo sapiens].
Length = 400
Score = 277 bits (709), Expect = 9e-75
Identities = 127/221 (57%), Positives = 163/221 (73%)
Frame = +1
Query: 175 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENITSGECLMTMHKENSRVKKGIKGKECRC 354
E DL + +SL+V FD +TM L WDC+EN T +C +T K+N V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLT-DKKNRVVEPRLSNNECSC 81
Query: 355 TFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 534
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 535 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 714
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 715 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRT 837
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRT 242
>ref|NP_758452.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform e precursor [Homo sapiens].
Length = 233
Score = 233 bits (593), Expect = 2e-61
Identities = 111/194 (57%), Positives = 139/194 (71%)
Frame = +1
Query: 175 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENITSGECLMTMHKENSRVKKGIKGKECRC 354
E DL + +SL+V FD +TM L WDC+EN T +C +T K+N V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLT-DKKNRVVEPRLSNNECSC 81
Query: 355 TFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 534
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 535 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 714
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 715 GIQFFDSVLMLKEI 756
GIQFFDS+L K+I
Sbjct: 202 GIQFFDSLLDTKKI 215
>ref|NP_001155004.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform h [Homo sapiens].
Length = 267
Score = 169 bits (427), Expect = 4e-42
Identities = 71/109 (65%), Positives = 92/109 (84%)
Frame = +1
Query: 511 MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFL 690
MNCTWA+G AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFL
Sbjct: 1 MNCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFL 60
Query: 691 VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRT 837
VNGTS++ GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT
Sbjct: 61 VNGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRT 109
>ref|NP_002174.1| interleukin-3 receptor subunit alpha precursor [Homo sapiens].
Length = 378
Score = 110 bits (276), Expect = 1e-24
Identities = 69/203 (33%), Positives = 100/203 (49%), Gaps = 6/203 (2%)
Frame = +1
Query: 235 KTMTLRWDCRENITSGECLMTMHKENSRVKKGIKGKECRCTFQDHSLHGGVSFTVKVNIG 414
K L WD N+T EC+ V C F SL ++TV+V
Sbjct: 35 KAQQLTWDLNRNVTDIECVKDADYSMPAVNNSY------CQFGAISLCEVTNYTVRVANP 88
Query: 415 --QRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKK 588
WI L N G A+N +C I++ DF++C+WA G AP D+QY LY+ + +
Sbjct: 89 PFSTWI---LFPENSGKPWAGAENLTCWIHDVDFLSCSWAVGPGAPADVQYDLYLNVANR 145
Query: 589 KIERECPRYLSDS-GTHVGCHLQNISGLSF---YSYFLVNGTSQKSGIQFFDSVLMLKEI 756
+ + EC Y +D+ GT +GC +IS LS S+ LV G S GI D ++ +I
Sbjct: 146 RQQYECLHYKTDAQGTRIGCRFDDISRLSSGSQSSHILVRGRSAAFGIPCTDKFVVFSQI 205
Query: 757 ERYNPPNNITVYCNESHCFIQWE 825
E PP N+T CN++H F+ W+
Sbjct: 206 EILTPP-NMTAKCNKTHSFMHWK 227
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,267,181
Number of extensions: 1176603
Number of successful extensions: 4936
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 4880
Number of HSP's successfully gapped: 19
Length of query: 307
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 205
Effective length of database: 14,934,836
Effective search space: 3061641380
Effective search space used: 3061641380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013316
(923 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896316.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 343 1e-91
gb|GL896464.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 220 1e-54
>gb|GL896316.1| Sus scrofa unplaced genomic scaffold chrU_scaffold669
Length = 12820
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 585 gaagaaaatcgagagagaatgtcctcggtacttatcagactcgggaacccacgtgggatg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3443 gaagaaaatcgagagagaatgtcctcggtacttatcagactcgggaacccacgtgggatg 3502
Query: 645 tcacctccaaaacatctcgggattaagtttttacagttacttcctggttaacggtaccag 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3503 tcacctccaaaacatctcgggattaagtttttacagttacttcctggttaacggtaccag 3562
Query: 705 ccaaaagtcaggaatccagttctttgactcggttttgatgttaaaggaaatag 757
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3563 ccaaaagtcaggaatccagttctttgactcggttttgatgttaaaggaaatag 3615
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 450 cccaggtgtggagggcaccgccgcccaaaacttctcctgtcttatctacaacgcggattt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3126 cccaggtgtggagggcaccgccgcccaaaacttctcctgtcttatctacaacgcggattt 3185
Query: 510 catgaactgcacctgggcaaagggccaagcagccccaaatgacatccaatattttttgta 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3186 catgaactgcacctgggcaaagggccaagcagccccaaatgacatccaatattttttgta 3245
Query: 570 tatacgagactcaaag 585
||||||||||||||||
Sbjct: 3246 tatacgagactcaaag 3261
Score = 254 bits (128), Expect = 7e-65
Identities = 135/136 (99%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 756 agagagatacaaccctcccaacaacatcaccgtgtactgcaatgaatcccactgcttcat 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5616 agagagatacaaccctcccaacaacatcaccgtgtactgcaatgaatcccactgcttcat 5675
Query: 816 ccagtgggaaaagcccaggacccg-aaaacactgtctgacagggagttccagtaccagct 874
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5676 ccagtgggaaaagcccaggacccgaaaaacactgtctgacagggagttccagtaccagct 5735
Query: 875 ggacatccagagacag 890
||||||||||||||||
Sbjct: 5736 ggacatccagagacag 5751
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 330 gatcaaaggcaaggaatgtcggtgtaccttccaagaccattctctccacgggggcgtttc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gatcaaaggcaaggaatgtcggtgtaccttccaagaccattctctccacgggggcgtttc 545
Query: 390 gttcacggttaaagtaaacatcggccaaagatggatttcagaaacgctggtctacagcaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gttcacggttaaagtaaacatcggccaaagatggatttcagaaacgctggtctacagcaa 605
Query: 450 cccaggt 456
|||||||
Sbjct: 606 cccaggt 612
Score = 63.9 bits (32), Expect = 1e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 889 agagcaatatcagacgcagtgaaaatcaactg 920
||||||||||||||||||||||||||||||||
Sbjct: 6288 agagcaatatcagacgcagtgaaaatcaactg 6319
>gb|GL896464.1| Sus scrofa unplaced genomic scaffold chrU_scaffold801
Length = 11266
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 184 gatcttcccgccctggaccagaacgccagtctccatgtgacgtttgacccaaagaccatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10182 gatcttcccgccctggaccagaacgccagtctccatgtgacgtttgacccaaagaccatg 10241
Query: 244 acactaaggtgggactgcagggaaaacatcacctctggggagtgcctgatg 294
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10242 acactaaggtgggactgcagggaaaacatcacctctggggagtgcctgatg 10292
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 gtgcggcagctctcagacgaggaagagacctgtcagagggctcagatgtggggacagcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5961 gtgcggcagctctcagacgaggaagagacctgtcagagggctcagatgtggggacagcgg 6020
Query: 61 gacacagccc 70
||||||||||
Sbjct: 6021 gacacagccc 6030
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 80 cagtgcttgctcatcccgcaggctgccccaggcgtctcctaacca 124
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9453 cagtgcttgctcatcccgcaggctgccccaggcgtctcctaacca 9497
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,876,511
Number of extensions: 132
Number of successful extensions: 132
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 8
Length of query: 923
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 902
Effective length of database: 2,808,413,156
Effective search space: 2533188666712
Effective search space used: 2533188666712
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)