Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013317
(984 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851588.1| PREDICTED: similar to Granulocyte-macrophage co... 334 9e-92
Alignment gi|XP_851626.1| PREDICTED: similar to interleukin 3 receptor, a... 133 3e-31
Alignment gi|XP_533759.2| PREDICTED: similar to interleukin 5 receptor, a... 74 2e-13
Alignment gi|NP_001003075.1| interleukin-13 receptor subunit alpha-2 prec... 59 5e-09
Alignment gi|XP_538150.2| PREDICTED: similar to Interleukin-13 receptor a... 50 4e-06
Alignment gi|NP_001003201.1| cytokine receptor common subunit gamma precu... 49 1e-05
>ref|XP_851588.1| PREDICTED: similar to Granulocyte-macrophage colony-stimulating
factor receptor alpha chain precursor (GM-CSF-R-alpha)
(GMR) (CDw116) (CD116 antigen) [Canis familiaris].
Length = 495
Score = 334 bits (856), Expect = 9e-92
Identities = 159/252 (63%), Positives = 196/252 (77%)
Frame = +3
Query: 222 DLPALDQNASLHVTFDPKTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECRCTFQ 401
DL ++ SL++ FD + M L WDC+EN T +C+M HKE ++ +K EC C F
Sbjct: 12 DLTTVEGFPSLNMKFDSRRMELSWDCKENTTYLECVMI-HKEKGPIEIMLKENECHCKFP 70
Query: 402 DHSLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAA 581
D+SLH GV+F VKVN QR I ETLVY+N G +GTAAQNFSC IYNA+FMNCTWAKGQAA
Sbjct: 71 DYSLHEGVTFMVKVNSIQRPIPETLVYTNSGGKGTAAQNFSCFIYNANFMNCTWAKGQAA 130
Query: 582 PNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKSGIQ 761
P+D+QYFLYIRD K + ERECP YL DSGTHVGCHL+++SGL++Y+YFLVNGTSQ++GIQ
Sbjct: 131 PDDVQYFLYIRDLKYRRERECPHYLEDSGTHVGCHLEDLSGLAYYNYFLVNGTSQRTGIQ 190
Query: 762 FFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQYQLDIQRQSNIR 941
FFDS+L K+IE Y+PPNNI+V+CN SHC IQWEKP TR TLS+REF+YQLDIQR ++
Sbjct: 191 FFDSILYWKKIEIYSPPNNISVHCNVSHCLIQWEKPVTRHTLSNREFKYQLDIQRLDSVP 250
Query: 942 RSENQLIVVSGD 977
I VSG+
Sbjct: 251 HPHGLSIEVSGN 262
>ref|XP_851626.1| PREDICTED: similar to interleukin 3 receptor, alpha precursor
[Canis familiaris].
Length = 639
Score = 133 bits (334), Expect = 3e-31
Identities = 86/238 (36%), Positives = 128/238 (53%), Gaps = 6/238 (2%)
Frame = +3
Query: 255 HVTFDPKTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECRCTFQDHSLHGGVSFT 434
++ +P + L WD NV+ KC + + + K I + C+ F L +FT
Sbjct: 227 NLRMEPGSRRLTWDLSGNVSEIKCFINS----KYITKAIDSRYCQ--FYVLPLCEVKNFT 280
Query: 435 VKVNIDQRWISETLVYSNPGVEG---TAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFL 605
+ V D + S L Y G EG AA+ C +++ DF+ C+W G+AAP D+QY L
Sbjct: 281 ISVKQDPPF-STGLQYVPRGAEGKPAAAARGLDCWVHDVDFLTCSWEVGRAAPGDVQYRL 339
Query: 606 YIRDSKKKIERECPRY-LSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKSGIQFFDSVLM 782
Y RD K E+ECPRY ++ G HV C ++S L + F VNGTS++SGI D +
Sbjct: 340 YWRDLKAYREQECPRYEANNRGVHVRCRFDDVSRLQRHIQFWVNGTSRRSGIPCSDLCVE 399
Query: 783 LKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLS--DREFQYQLDIQRQSNIRRSE 950
L EIER +PP +IT CN+S+ ++W K LS + F Y+L IQ+ ++ +E
Sbjct: 400 LPEIERLSPP-HITATCNKSYSMMEW------KVLSHFNHRFLYELQIQKGTDPASTE 450
>ref|XP_533759.2| PREDICTED: similar to interleukin 5 receptor, alpha isoform 1
precursor [Canis familiaris].
Length = 415
Score = 74.3 bits (181), Expect = 2e-13
Identities = 57/175 (32%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Frame = +3
Query: 411 LHGGVSFTVKVNI-------DQRWISETLVYSNPGVEGTAAQNFSCL---IYNAD----- 545
LH G S +V+ + W+S L + PG GT+ N +C ++N
Sbjct: 85 LHQGFSASVQTILWDGHSLLPSDWVSAELK-APPGSPGTSIVNLTCTTNTVFNNSNPLRP 143
Query: 546 ---FMNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDS-GTHVGCHLQNISGLSF 713
++CTW G+ AP D QYFLY R + EC Y D+ ++ C S
Sbjct: 144 YQVSLHCTWLVGKDAPEDTQYFLYYRYGS--MTEECQEYRKDTLKRNIACWFPRTFISSR 201
Query: 714 YSYFL---VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKP 869
S L V G+S+ + I+ FD + L EI+R NPP N+T S IQW+KP
Sbjct: 202 GSDSLAVQVKGSSKHTIIKPFDQLFALHEIDRINPPENVTAVIEGSGLSIQWKKP 256
>ref|NP_001003075.1| interleukin-13 receptor subunit alpha-2 precursor [Canis lupus
familiaris].
Length = 386
Score = 59.3 bits (142), Expect = 5e-09
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Frame = +3
Query: 459 WISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKKKIER 638
W T S G T Q+ C+ YN ++ C+W G D Y L+
Sbjct: 122 WAETTYWTSPQGNRETKIQDMDCVYYNWQYLVCSWKPGMGVHFDTNYQLFYWYEGLDHSA 181
Query: 639 ECPRYLSDSGTHVGCHLQNISGLSFYSYFL-VNGTSQKSGIQFFDSVLMLKEIERYNPPN 815
EC Y+ +G ++GC + + +++ VNG+S+ I+ + L+ I + PP+
Sbjct: 182 ECTDYIKVNGKNMGCRFPYLESSDYKDFYICVNGSSESQPIRPSYFIFQLQNIVKPMPPD 241
Query: 816 NITVYC-NESHCFIQWEKPR 872
+++ N ++W P+
Sbjct: 242 YLSLTVKNSEEINLKWNMPK 261
>ref|XP_538150.2| PREDICTED: similar to Interleukin-13 receptor alpha-1 chain
precursor (IL-13R-alpha-1) (IL-13RA-1) (CD213a1 antigen)
[Canis familiaris].
Length = 450
Score = 49.7 bits (117), Expect = 4e-06
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Frame = +3
Query: 504 TAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGC 683
+A C+ +N +M CTW G+ D Y LY S +C + G H+GC
Sbjct: 150 SAVTELQCVWHNLSYMKCTWLPGRNTSPDTNYTLYYWHSSLGKILQCEDIYRE-GQHIGC 208
Query: 684 H--LQNISGLSFYSYFLVNGTSQKSG-IQFFDSVLMLKEIERYNPPNNITVYCNESHCFI 854
L N+ SF + + +G I+ +++ L + +PP+ ++ + ++
Sbjct: 209 SFALTNLKDSSFEQHSVQIVVKDNAGKIRPSFNIVPLTSHVKPDPPHIKRLFFQNGNLYV 268
Query: 855 QWEKPRTRKTLSDREFQYQLDIQRQSNIRRSENQLIVV 968
QW+ P + R YQ+++ +N + N + V
Sbjct: 269 QWKNP---QNFYSRCLSYQVEV---NNSQTETNDIFYV 300
>ref|NP_001003201.1| cytokine receptor common subunit gamma precursor [Canis lupus
familiaris].
Length = 373
Score = 48.5 bits (114), Expect = 1e-05
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 2/156 (1%)
Frame = +3
Query: 465 SETLVYSNPGVEGTAAQNFSCLIYNADFMNCTW-AKGQAAPNDIQYFLYIRDSKKKIERE 641
SETL V C ++N ++MNCTW + + P ++ + ++S +E
Sbjct: 47 SETL-----SVSSLPLPEVQCFVFNVEYMNCTWNSSSEPRPTNLTLHYWYKNSNDDKVQE 101
Query: 642 CPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKSGIQFFDSVLMLKEIERYNPPNNI 821
C YL GC LQ + Y F+V + + L L+ + P N+
Sbjct: 102 CGHYLFSREVTAGCWLQK-EEIHLYETFVVQLRDPREPRRQSTQKLKLQNLVIPWAPENL 160
Query: 822 TVY-CNESHCFIQWEKPRTRKTLSDREFQYQLDIQR 926
T++ +ES + W L + QY+ D R
Sbjct: 161 TLHNLSESQLELSWSNRHLDHCL-EHVVQYRSDWDR 195
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,076,528
Number of extensions: 1223022
Number of successful extensions: 5634
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5550
Number of HSP's successfully gapped: 6
Length of query: 328
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 225
Effective length of database: 15,440,896
Effective search space: 3474201600
Effective search space used: 3474201600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013317
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013317
(984 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002686644.1| PREDICTED: colony stimulating factor 2 recep... 380 e-105
Alignment gi|XP_002686633.1| PREDICTED: colony stimulating factor 2 recep... 111 1e-24
Alignment gi|XP_002697013.1| PREDICTED: interleukin 5 receptor, alpha-lik... 69 6e-12
Alignment gi|XP_872862.4| PREDICTED: interleukin 5 receptor, alpha-like [... 69 6e-12
Alignment gi|NP_001095766.1| interleukin-13 receptor subunit alpha-2 [Bos... 65 9e-11
Alignment gi|XP_002699641.1| PREDICTED: interleukin 13 receptor, alpha 2-... 65 9e-11
Alignment gi|XP_002684050.1| PREDICTED: interleukin 3 receptor, alpha-lik... 59 7e-09
>ref|XP_002686644.1| PREDICTED: colony stimulating factor 2 receptor alpha chain-like
[Bos taurus].
Length = 348
Score = 380 bits (975), Expect = e-105
Identities = 178/258 (68%), Positives = 220/258 (85%)
Frame = +3
Query: 210 REHQDLPALDQNASLHVTFDPKTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECR 389
+E QDLP + NASL+V FDP+T L WDCREN +SG+C++ HKE +KK++K EC+
Sbjct: 11 QEQQDLPTVKPNASLNVKFDPQTTKLTWDCRENASSGECVLI-HKEKGPIKKKVKDSECQ 69
Query: 390 CTFQDHSLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAK 569
CTFQD+SLHGGV+ TV+V+++QR +SE LVY+NPG EGTAAQNFSC+IY+ADFMNC+WAK
Sbjct: 70 CTFQDYSLHGGVTLTVEVHVNQRRLSEMLVYTNPGREGTAAQNFSCVIYDADFMNCSWAK 129
Query: 570 GQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQK 749
G+AAP+D+QYFLYIR SKK+IERECPRYL DSGTHVGCHLQ++SGL+ Y+YFLVNGTSQ+
Sbjct: 130 GRAAPDDVQYFLYIR-SKKRIERECPRYLKDSGTHVGCHLQDLSGLTSYNYFLVNGTSQE 188
Query: 750 SGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQYQLDIQRQ 929
+GIQFFDSVL+LKEIE+YNPP+NITV CNESHC I+WEKPRTR+ +REFQYQLDIQR+
Sbjct: 189 TGIQFFDSVLLLKEIEQYNPPDNITVQCNESHCLIRWEKPRTRQPWPNREFQYQLDIQRR 248
Query: 930 SNIRRSENQLIVVSGDLG 983
+ SE + V GD G
Sbjct: 249 VSGLGSEQVISNVFGDSG 266
>ref|XP_002686633.1| PREDICTED: colony stimulating factor 2 receptor alpha chain-like
[Bos taurus].
Length = 300
Score = 111 bits (277), Expect = 1e-24
Identities = 63/138 (45%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Frame = +3
Query: 549 MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDS-GTHVGCHLQNIS-GLSFYSY 722
MNC+W +G AAP D+QY LY S EC Y+ DS GT VGCH + G + Y
Sbjct: 1 MNCSWTRGPAAPADVQYQLYSWTSLHGNVSECSHYVLDSAGTRVGCHFDELGEGHTTDDY 60
Query: 723 F-LVNGTSQKSGIQFFDSVLML-KEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDR 896
F LVNGTS S IQF DS + +E+YNPP N+TV N SH I+W+ P R +LS+
Sbjct: 61 FFLVNGTSSDSDIQFLDSPSVNGPSLEKYNPPANVTVQDNVSHFVIRWDAPAMRYSLSNS 120
Query: 897 EFQYQLDIQRQSNIRRSE 950
+Y LDIQ+ + + E
Sbjct: 121 VLRYALDIQKMGSFSKRE 138
>ref|XP_002697013.1| PREDICTED: interleukin 5 receptor, alpha-like [Bos taurus].
Length = 556
Score = 68.9 bits (167), Expect = 6e-12
Identities = 52/152 (34%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Frame = +3
Query: 459 WISETLV--YSNPGVE--------GTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLY 608
W+S L +PG E T A N++ L ++CTW G+ AP+D QYFLY
Sbjct: 251 WVSAELKAPIGSPGTEIVNLTCTTNTKADNYTHLRPYQVSLHCTWLVGKDAPDDTQYFLY 310
Query: 609 IRDSKKKIERECPRYLSDS-GTHVGCHLQ----NISGLSFYSYFLVNGTSQKSGIQFFDS 773
R + IE EC Y D +V C N G + + + VNG+S+ + I+ FD
Sbjct: 311 YR-YRSWIE-ECQEYSKDVLQRNVACWFPRTFINSKGRDYLAVY-VNGSSKGAAIKPFDQ 367
Query: 774 VLMLKEIERYNPPNNITVYCNESHCFIQWEKP 869
+ L I+R N P N+T + I WEKP
Sbjct: 368 LFALHAIDRVNSPANVTAEIKGTCLSIHWEKP 399
>ref|XP_872862.4| PREDICTED: interleukin 5 receptor, alpha-like [Bos taurus].
Length = 641
Score = 68.9 bits (167), Expect = 6e-12
Identities = 52/152 (34%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Frame = +3
Query: 459 WISETLV--YSNPGVE--------GTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLY 608
W+S L +PG E T A N++ L ++CTW G+ AP+D QYFLY
Sbjct: 251 WVSAELKAPIGSPGTEIVNLTCTTNTKADNYTHLRPYQVSLHCTWLVGKDAPDDTQYFLY 310
Query: 609 IRDSKKKIERECPRYLSDS-GTHVGCHLQ----NISGLSFYSYFLVNGTSQKSGIQFFDS 773
R + IE EC Y D +V C N G + + + VNG+S+ + I+ FD
Sbjct: 311 YR-YRSWIE-ECQEYSKDVLQRNVACWFPRTFINSKGRDYLAVY-VNGSSKGAAIKPFDQ 367
Query: 774 VLMLKEIERYNPPNNITVYCNESHCFIQWEKP 869
+ L I+R N P N+T + I WEKP
Sbjct: 368 LFALHAIDRVNSPANVTAEIKGTCLSIHWEKP 399
>ref|NP_001095766.1| interleukin-13 receptor subunit alpha-2 [Bos taurus].
Length = 380
Score = 65.1 bits (157), Expect = 9e-11
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Frame = +3
Query: 447 IDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKK 626
+ W T S+ G T Q+ C+ YN ++ C+W G A D Y LY
Sbjct: 119 VQSSWSEATYWISSQGNLDTKIQDMDCVYYNWQYLLCSWKPGMGAHLDSNYRLYYWYEGL 178
Query: 627 KIERECPRYLSDSGTHVGCHLQNISGLSFYSYFL-VNGTSQKSGIQFFDSVLMLKEIERY 803
EC Y+ G ++GC + + +++ VNG+S+ I+ + L+ I +
Sbjct: 179 DHVLECIDYIQAKGKNIGCRFPYLESSDYKDFYICVNGSSESQLIRPSYFIFQLQNIVKP 238
Query: 804 NPPNNITVYCNESHCFIQWEKPR 872
PP+ +++ S ++W PR
Sbjct: 239 LPPDYLSLTMKNSEVNLKWSIPR 261
>ref|XP_002699641.1| PREDICTED: interleukin 13 receptor, alpha 2-like [Bos taurus].
Length = 380
Score = 65.1 bits (157), Expect = 9e-11
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Frame = +3
Query: 447 IDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKK 626
+ W T S+ G T Q+ C+ YN ++ C+W G A D Y LY
Sbjct: 119 VQSSWSEATYWISSQGNLDTKIQDMDCVYYNWQYLLCSWKPGMGAHLDSNYRLYYWYEGL 178
Query: 627 KIERECPRYLSDSGTHVGCHLQNISGLSFYSYFL-VNGTSQKSGIQFFDSVLMLKEIERY 803
EC Y+ G ++GC + + +++ VNG+S+ I+ + L+ I +
Sbjct: 179 DHVLECIDYIQAKGKNIGCRFPYLESSDYKDFYICVNGSSESQLIRPSYFIFQLQNIVKP 238
Query: 804 NPPNNITVYCNESHCFIQWEKPR 872
PP+ +++ S ++W PR
Sbjct: 239 LPPDYLSLTMKNSEVNLKWSIPR 261
>ref|XP_002684050.1| PREDICTED: interleukin 3 receptor, alpha-like, partial [Bos
taurus].
Length = 427
Score = 58.9 bits (141), Expect = 7e-09
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Frame = +3
Query: 642 CPRYLSDS-GTHVGCHLQNIS---GLSFYSYFLVNGTSQKSGIQFFDSVLMLKEIERYNP 809
CP+Y+ + G +V CH ++S FLVNGTS S I L+EIE
Sbjct: 199 CPKYMQNQQGVNVQCHFDSLSLQPERQTLFRFLVNGTSGGSKIPCRQMTHRLEEIEILAA 258
Query: 810 PNNITVYCNESHCFIQWEKPRTRKTLSDREFQYQLDIQRQSNIRRSENQLIVVSG 974
PN +CNE++ F++WE ++L + +Y+L+IQ+ +++ E + V G
Sbjct: 259 PNITKKWCNENYSFMEWEV----RSLFTEDIKYELEIQKGTDLAYKEETELKVLG 309
Score = 56.6 bits (135), Expect = 3e-08
Identities = 36/120 (30%), Positives = 63/120 (52%)
Frame = +3
Query: 255 HVTFDPKTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECRCTFQDHSLHGGVSFT 434
++ DP+ L WD NV+ C + + ++KK I+ + C+ D S ++T
Sbjct: 10 NLRIDPERKRLAWDQHGNVSEIGCYVNS----KILKKAIE--KPYCSLGDLSCEVK-NYT 62
Query: 435 VKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIR 614
VKV I + S + Y G AA N +C +++ D ++C+WA G+ AP ++QY Y++
Sbjct: 63 VKV-IKGQPFSAWIQYPKQGNPLAAADNLTCRVHDVDQLSCSWAVGEEAPANVQYHFYLK 121
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,323,811
Number of extensions: 1189175
Number of successful extensions: 5231
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5167
Number of HSP's successfully gapped: 8
Length of query: 328
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,273,310
Effective search space: 3211494750
Effective search space used: 3211494750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013317
(984 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362122.1| PREDICTED: granulocyte-macrophage colony-sti... 427 e-120
Alignment gi|XP_003358548.1| PREDICTED: interleukin-5 receptor subunit al... 75 6e-14
Alignment gi|NP_001230563.1| interleukin-13 receptor subunit alpha-2 [Sus... 57 2e-08
>ref|XP_003362122.1| PREDICTED: granulocyte-macrophage colony-stimulating factor
receptor subunit alpha-like, partial [Sus scrofa].
Length = 260
Score = 427 bits (1098), Expect = e-120
Identities = 204/205 (99%), Positives = 204/205 (99%)
Frame = +3
Query: 369 IKGKECRCTFQDHSLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADF 548
IKGKECRCTFQDHSLHGGVSFTVKVNI QRWISETLVYSNPGVEGTAAQNFSCLIYNADF
Sbjct: 1 IKGKECRCTFQDHSLHGGVSFTVKVNIGQRWISETLVYSNPGVEGTAAQNFSCLIYNADF 60
Query: 549 MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFL 728
MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFL
Sbjct: 61 MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFL 120
Query: 729 VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQY 908
VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQY
Sbjct: 121 VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQY 180
Query: 909 QLDIQRQSNIRRSENQLIVVSGDLG 983
QLDIQRQSNIRRSENQLIVVSGDLG
Sbjct: 181 QLDIQRQSNIRRSENQLIVVSGDLG 205
>ref|XP_003358548.1| PREDICTED: interleukin-5 receptor subunit alpha [Sus scrofa].
Length = 436
Score = 75.1 bits (183), Expect = 6e-14
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Frame = +3
Query: 411 LHGGVSFTVKVNI-------DQRWISETLVYSNPGVEGTAAQNFSCLIYNADF------- 548
LH G S +V+ + W+S L PG GT+ N +C +
Sbjct: 106 LHKGFSASVRTILWNNHSFPASSWVSAELKVP-PGSPGTSIVNLTCTTNTEAYNYTHERP 164
Query: 549 ----MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGT-HVGCHLQ----NIS 701
++CTW G+ AP D QYFLY R + EC Y D+ ++ C N
Sbjct: 165 YQVSLHCTWLVGKDAPEDTQYFLYYRYGS--VTEECREYSKDTQQRNIACRFPRTVINSK 222
Query: 702 GLSFYSYFLVNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKP 869
G + + + VNG+S++ I+ FD + L I+R N P N+T + IQWEKP
Sbjct: 223 GRDWLAVY-VNGSSKEEAIKPFDQLFALHAIDRVNSPVNVTAEIEGTCLSIQWEKP 277
>ref|NP_001230563.1| interleukin-13 receptor subunit alpha-2 [Sus scrofa].
Length = 387
Score = 57.0 bits (136), Expect = 2e-08
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 3/145 (2%)
Frame = +3
Query: 447 IDQRWISETLVYSNP-GVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSK 623
+ W SET ++ P G T Q+ C+ YN ++ C+W G D Y L+
Sbjct: 119 VQSSW-SETTYWTLPQGNLETKIQDMDCVYYNWQYLLCSWKPGMGVHFDTNYNLFYWYEG 177
Query: 624 KKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFL-VNGTSQKSGIQFFDSVLMLKEIER 800
+C Y+ +G + GC + + +++ VNG+S+ I+ + L+ I +
Sbjct: 178 LDHALQCADYIKTNGKNTGCRFPYLESSDYKDFYICVNGSSESQSIRPSYFIFQLQNIVK 237
Query: 801 YNPPNNITVYC-NESHCFIQWEKPR 872
PP+ +++ N ++W PR
Sbjct: 238 PLPPDYLSLTVKNSEEVNLKWSIPR 262
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,611,110
Number of extensions: 762456
Number of successful extensions: 3233
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3212
Number of HSP's successfully gapped: 3
Length of query: 328
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,879,129
Effective search space: 2033320541
Effective search space used: 2033320541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013317
(984 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034100.2| granulocyte-macrophage colony-stimulating facto... 137 1e-32
Alignment gi|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292... 102 5e-22
Alignment gi|NP_032396.1| interleukin-5 receptor subunit alpha precursor ... 81 1e-15
Alignment gi|NP_032382.1| interleukin-13 receptor subunit alpha-2 precurs... 67 3e-11
Alignment gi|NP_032395.1| interleukin-3 receptor subunit alpha precursor ... 64 2e-10
Alignment gi|NP_038591.1| cytokine receptor common subunit gamma precurso... 49 5e-06
>ref|NP_034100.2| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha precursor [Mus musculus].
Length = 388
Score = 137 bits (345), Expect = 1e-32
Identities = 78/235 (33%), Positives = 123/235 (52%), Gaps = 6/235 (2%)
Frame = +3
Query: 237 DQNASLHVTFDPKTMTLRWDCRE---NVTSGKCLMTTHKENSLVKKEIKGKECRCTFQDH 407
D ++L++TFDP T TL W C NVT C +T+ + + + + CRC F+
Sbjct: 37 DAGSALNLTFDPWTRTLTWACDTAAGNVTVTSCTVTSREAG--IHRRVSPFGCRCWFRRM 94
Query: 408 -SLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAP 584
+LH GV+ V + L + N G G+ A+N +C I A F++C W +G AAP
Sbjct: 95 MALHHGVTLDVNGTVGGAAAHWRLSFVNEGAAGSGAENLTCEIRAARFLSCAWREGPAAP 154
Query: 585 NDIQYFLYIRDSKKKIERECPRYLSDSGTHV--GCHLQNISGLSFYSYFLVNGTSQKSGI 758
D++Y L + +S + R ++D G V C ++S L +Y +V G S +
Sbjct: 155 ADVRYSLRVLNSTG---HDVARCMADPGDDVITQCIANDLSLLGSEAYLVVTGRSGAGPV 211
Query: 759 QFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQYQLDIQ 923
+F D V+ K +ER PP ++T CN SHC + W P T +L+ R+FQ+++ Q
Sbjct: 212 RFLDDVVATKALERLGPPRDVTASCNSSHCTVSWAPPSTWASLTARDFQFEVQWQ 266
>ref|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292 [Mus musculus].
Length = 419
Score = 102 bits (254), Expect = 5e-22
Identities = 51/146 (34%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Frame = +3
Query: 492 GVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGT 671
G G+ A+N +C I A F++C W +G AAP D++Y L + +S + R ++D G
Sbjct: 228 GAAGSGAENLTCEIRAARFLSCAWREGPAAPADVRYSLRVLNSTG---HDVARCMADPGD 284
Query: 672 HV--GCHLQNISGLSFYSYFLVNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESH 845
V C ++S L +Y +V G S ++F D V+ K +ER +PP ++T CN SH
Sbjct: 285 DVITQCIANDLSLLGSEAYLVVTGRSGAGPVRFLDDVVATKALERLDPPRDVTASCNSSH 344
Query: 846 CFIQWEKPRTRKTLSDREFQYQLDIQ 923
C + W P T +L+ R+FQ+++ Q
Sbjct: 345 CTVSWAPPSTWASLTARDFQFEVQWQ 370
>ref|NP_032396.1| interleukin-5 receptor subunit alpha precursor [Mus musculus].
Length = 415
Score = 81.3 bits (199), Expect = 1e-15
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 22/206 (10%)
Frame = +3
Query: 411 LHGGVSFTVKV-------NIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADF------- 548
LH G + +V+ + W+S L + PG GT+ N +C +
Sbjct: 87 LHEGFAASVRTILKSSHTTLASSWVSAELK-APPGSPGTSVTNLTCTTHTVVSSHTHLRP 145
Query: 549 ----MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDS-GTHVGCHLQN--ISGL 707
+ CTW G+ AP D QYFLY R + +C Y D+ + C I+
Sbjct: 146 YQVSLRCTWLVGKDAPEDTQYFLYYRFGV--LTEKCQEYSRDALNRNTACWFPRTFINSK 203
Query: 708 SFYSYFL-VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKT 884
F + +NG+S+++ I+ FD + I++ NPP N+TV + +IQWEKP +
Sbjct: 204 GFEQLAVHINGSSKRAAIKPFDQLFSPLAIDQVNPPRNVTVEIESNSLYIQWEKPLS--A 261
Query: 885 LSDREFQYQLDIQRQSNIRRSENQLI 962
D F Y+L I N + +LI
Sbjct: 262 FPDHCFNYELKIYNTKNGHIQKEKLI 287
>ref|NP_032382.1| interleukin-13 receptor subunit alpha-2 precursor [Mus musculus].
Length = 383
Score = 66.6 bits (161), Expect = 3e-11
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 2/179 (1%)
Frame = +3
Query: 339 HKENSLVKKEIKGKECRCTFQDHSLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQN 518
+K+ + K I+GK R +H +G + WI + S+ G T Q+
Sbjct: 85 YKDGFDLNKGIEGK-IRTHLSEHCTNGS-------EVQSPWIEASYGISDEGSLETKIQD 136
Query: 519 FSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNI 698
C+ YN ++ C+W G+ +D Y ++ +C YL +VGC L N+
Sbjct: 137 MKCIYYNWQYLVCSWKPGKTVYSDTNYTMFFWYEGLDHALQCADYLQHDEKNVGCKLSNL 196
Query: 699 SGLSFYSYFL-VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYC-NESHCFIQWEKP 869
+ +F+ VNG+S+ I+ +V L+ I + PP + + N ++W P
Sbjct: 197 DSSDYKDFFICVNGSSKLEPIRSSYTVFQLQNIVKPLPPEFLHISVENSIDIRMKWSTP 255
>ref|NP_032395.1| interleukin-3 receptor subunit alpha precursor [Mus musculus].
Length = 396
Score = 63.5 bits (153), Expect = 2e-10
Identities = 73/265 (27%), Positives = 108/265 (40%), Gaps = 24/265 (9%)
Frame = +3
Query: 249 SLHVTFDPKTMTLRWDCRE--NVTSGKCLMTTHKENSLVKKEIKGKECRCTFQDHSLHGG 422
+LH+ DP TL WD ++T+G K + G RC+FQ SL
Sbjct: 36 NLHI--DPAHYTLSWDPAPGADITTGAFC---RKGRDIFVWADPGL-ARCSFQSLSLCHV 89
Query: 423 VSFTVKVNIDQRWISETLVY--SNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQ 596
+FTV + D R ++ ++ + + G AAQ+ C ++ ++C W +G A D+
Sbjct: 90 TNFTVFLGKD-RAVAGSIQFPPDDDGDHEAAAQDLRCWVHEGQ-LSCQWERGPKATGDVH 147
Query: 597 YFLYIRDSK--KKIERECPRYLS---------DSGTHVGCHLQ---------NISGLSFY 716
Y ++ RD + RECP Y S G H GC L N L
Sbjct: 148 YRMFWRDVRLGPAHNRECPHYHSLDVNTAGPAPHGGHEGCTLDLDTVLGSTPNSPDLVPQ 207
Query: 717 SYFLVNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDR 896
VNG+ + + D+ + L+ E PP +TV CN S +W R
Sbjct: 208 VTITVNGSGRAGPVPCMDNTVDLQRAEVLAPP-TLTVECNGSEAHARWV---ARNRFHHG 263
Query: 897 EFQYQLDIQRQSNIRRSENQLIVVS 971
Y L + + S RSE Q VS
Sbjct: 264 LLGYTLQVNQSS---RSEPQEYNVS 285
>ref|NP_038591.1| cytokine receptor common subunit gamma precursor [Mus musculus].
Length = 369
Score = 49.3 bits (116), Expect = 5e-06
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 9/194 (4%)
Frame = +3
Query: 411 LHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNF-----SCLIYNADFMNCTW---A 566
L G S V ++ I L+ ++ E +A C ++N ++MNCTW +
Sbjct: 19 LRAGWSSKVLMSSANEDIKADLILTSTAPEHLSAPTLPLPEVQCFVFNIEYMNCTWNSSS 78
Query: 567 KGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQ 746
+ QA + Y + D+ +EC YL GC +Q + Y F+V
Sbjct: 79 EPQATNLTLHYRYKVSDN--NTFQECSHYLFSKEITSGCQIQK-EDIQLYQTFVVQLQDP 135
Query: 747 KSGIQFFDSVLMLKEIERYNPPNNITV-YCNESHCFIQWEKPRTRKTLSDREFQYQLDIQ 923
+ + L L+ + P N+T+ +ES ++W+ + + +R QY +Q
Sbjct: 136 QKPQRRAVQKLNLQNLVIPRAPENLTLSNLSESQLELRWKS----RHIKERCLQYL--VQ 189
Query: 924 RQSNIRRSENQLIV 965
+SN RS +LIV
Sbjct: 190 YRSNRDRSWTELIV 203
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,929,908
Number of extensions: 1011442
Number of successful extensions: 4394
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4361
Number of HSP's successfully gapped: 6
Length of query: 328
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 226
Effective length of database: 12,553,887
Effective search space: 2837178462
Effective search space used: 2837178462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013317
(984 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155003.1| granulocyte-macrophage colony-stimulating fa... 311 4e-85
Alignment gi|NP_001155002.1| granulocyte-macrophage colony-stimulating fa... 311 4e-85
Alignment gi|NP_001155001.1| granulocyte-macrophage colony-stimulating fa... 311 4e-85
Alignment gi|NP_758450.1| granulocyte-macrophage colony-stimulating facto... 311 4e-85
Alignment gi|NP_758449.1| granulocyte-macrophage colony-stimulating facto... 311 4e-85
Alignment gi|NP_758448.1| granulocyte-macrophage colony-stimulating facto... 311 4e-85
Alignment gi|NP_006131.2| granulocyte-macrophage colony-stimulating facto... 311 4e-85
Alignment gi|NP_758452.1| granulocyte-macrophage colony-stimulating facto... 237 1e-62
Alignment gi|NP_001155004.1| granulocyte-macrophage colony-stimulating fa... 199 4e-51
Alignment gi|NP_002174.1| interleukin-3 receptor subunit alpha precursor ... 118 7e-27
>ref|NP_001155003.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform g precursor [Homo sapiens].
Length = 410
Score = 311 bits (798), Expect = 4e-85
Identities = 146/256 (57%), Positives = 188/256 (73%)
Frame = +3
Query: 213 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECRC 392
E DL + +SL+V FD +TM L WDC+EN T KC +T K+N +V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLTD-KKNRVVEPRLSNNECSC 81
Query: 393 TFQDHSLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 572
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 573 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 752
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 753 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQYQLDIQRQS 932
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT + LS +FQYQLD+ R++
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKN 261
Query: 933 NIRRSENQLIVVSGDL 980
+EN LI VSGDL
Sbjct: 262 TQPGTENLLINVSGDL 277
>ref|NP_001155002.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform f precursor [Homo sapiens].
Length = 434
Score = 311 bits (798), Expect = 4e-85
Identities = 146/256 (57%), Positives = 188/256 (73%)
Frame = +3
Query: 213 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECRC 392
E DL + +SL+V FD +TM L WDC+EN T KC +T K+N +V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLTD-KKNRVVEPRLSNNECSC 81
Query: 393 TFQDHSLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 572
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 573 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 752
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 753 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQYQLDIQRQS 932
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT + LS +FQYQLD+ R++
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKN 261
Query: 933 NIRRSENQLIVVSGDL 980
+EN LI VSGDL
Sbjct: 262 TQPGTENLLINVSGDL 277
>ref|NP_001155001.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform a precursor [Homo sapiens].
Length = 400
Score = 311 bits (798), Expect = 4e-85
Identities = 146/256 (57%), Positives = 188/256 (73%)
Frame = +3
Query: 213 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECRC 392
E DL + +SL+V FD +TM L WDC+EN T KC +T K+N +V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLTD-KKNRVVEPRLSNNECSC 81
Query: 393 TFQDHSLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 572
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 573 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 752
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 753 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQYQLDIQRQS 932
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT + LS +FQYQLD+ R++
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKN 261
Query: 933 NIRRSENQLIVVSGDL 980
+EN LI VSGDL
Sbjct: 262 TQPGTENLLINVSGDL 277
>ref|NP_758450.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform c precursor [Homo sapiens].
Length = 333
Score = 311 bits (798), Expect = 4e-85
Identities = 146/256 (57%), Positives = 188/256 (73%)
Frame = +3
Query: 213 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECRC 392
E DL + +SL+V FD +TM L WDC+EN T KC +T K+N +V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLTD-KKNRVVEPRLSNNECSC 81
Query: 393 TFQDHSLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 572
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 573 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 752
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 753 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQYQLDIQRQS 932
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT + LS +FQYQLD+ R++
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKN 261
Query: 933 NIRRSENQLIVVSGDL 980
+EN LI VSGDL
Sbjct: 262 TQPGTENLLINVSGDL 277
>ref|NP_758449.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform b precursor [Homo sapiens].
Length = 377
Score = 311 bits (798), Expect = 4e-85
Identities = 146/256 (57%), Positives = 188/256 (73%)
Frame = +3
Query: 213 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECRC 392
E DL + +SL+V FD +TM L WDC+EN T KC +T K+N +V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLTD-KKNRVVEPRLSNNECSC 81
Query: 393 TFQDHSLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 572
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 573 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 752
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 753 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQYQLDIQRQS 932
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT + LS +FQYQLD+ R++
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKN 261
Query: 933 NIRRSENQLIVVSGDL 980
+EN LI VSGDL
Sbjct: 262 TQPGTENLLINVSGDL 277
>ref|NP_758448.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform a precursor [Homo sapiens].
Length = 400
Score = 311 bits (798), Expect = 4e-85
Identities = 146/256 (57%), Positives = 188/256 (73%)
Frame = +3
Query: 213 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECRC 392
E DL + +SL+V FD +TM L WDC+EN T KC +T K+N +V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLTD-KKNRVVEPRLSNNECSC 81
Query: 393 TFQDHSLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 572
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 573 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 752
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 753 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQYQLDIQRQS 932
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT + LS +FQYQLD+ R++
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKN 261
Query: 933 NIRRSENQLIVVSGDL 980
+EN LI VSGDL
Sbjct: 262 TQPGTENLLINVSGDL 277
>ref|NP_006131.2| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform a precursor [Homo sapiens].
Length = 400
Score = 311 bits (798), Expect = 4e-85
Identities = 146/256 (57%), Positives = 188/256 (73%)
Frame = +3
Query: 213 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECRC 392
E DL + +SL+V FD +TM L WDC+EN T KC +T K+N +V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLTD-KKNRVVEPRLSNNECSC 81
Query: 393 TFQDHSLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 572
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 573 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 752
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 753 GIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQYQLDIQRQS 932
GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT + LS +FQYQLD+ R++
Sbjct: 202 GIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKN 261
Query: 933 NIRRSENQLIVVSGDL 980
+EN LI VSGDL
Sbjct: 262 TQPGTENLLINVSGDL 277
>ref|NP_758452.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform e precursor [Homo sapiens].
Length = 233
Score = 237 bits (604), Expect = 1e-62
Identities = 112/194 (57%), Positives = 140/194 (72%)
Frame = +3
Query: 213 EHQDLPALDQNASLHVTFDPKTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECRC 392
E DL + +SL+V FD +TM L WDC+EN T KC +T K+N +V+ + EC C
Sbjct: 23 EKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLTD-KKNRVVEPRLSNNECSC 81
Query: 393 TFQDHSLHGGVSFTVKVNIDQRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKG 572
TF++ LH GV+F V VN QR + L+Y N G EGTAAQNFSC IYNAD MNCTWA+G
Sbjct: 82 TFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWARG 141
Query: 573 QAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFLVNGTSQKS 752
AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFLVNGTS++
Sbjct: 142 PTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREI 201
Query: 753 GIQFFDSVLMLKEI 794
GIQFFDS+L K+I
Sbjct: 202 GIQFFDSLLDTKKI 215
>ref|NP_001155004.1| granulocyte-macrophage colony-stimulating factor receptor subunit
alpha isoform h [Homo sapiens].
Length = 267
Score = 199 bits (505), Expect = 4e-51
Identities = 89/144 (61%), Positives = 116/144 (80%)
Frame = +3
Query: 549 MNCTWAKGQAAPNDIQYFLYIRDSKKKIERECPRYLSDSGTHVGCHLQNISGLSFYSYFL 728
MNCTWA+G AP D+QYFLYIR+SK++ E CP Y+ DSGTHVGCHL N+SGL+ +YFL
Sbjct: 1 MNCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFL 60
Query: 729 VNGTSQKSGIQFFDSVLMLKEIERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQY 908
VNGTS++ GIQFFDS+L K+IER+NPP+N+TV CN +HC ++W++PRT + LS +FQY
Sbjct: 61 VNGTSREIGIQFFDSLLDTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQY 120
Query: 909 QLDIQRQSNIRRSENQLIVVSGDL 980
QLD+ R++ +EN LI VSGDL
Sbjct: 121 QLDVHRKNTQPGTENLLINVSGDL 144
>ref|NP_002174.1| interleukin-3 receptor subunit alpha precursor [Homo sapiens].
Length = 378
Score = 118 bits (296), Expect = 7e-27
Identities = 75/225 (33%), Positives = 114/225 (50%), Gaps = 6/225 (2%)
Frame = +3
Query: 273 KTMTLRWDCRENVTSGKCLMTTHKENSLVKKEIKGKECRCTFQDHSLHGGVSFTVKVNID 452
K L WD NVT +C+ V C F SL ++TV+V
Sbjct: 35 KAQQLTWDLNRNVTDIECVKDADYSMPAVNNSY------CQFGAISLCEVTNYTVRVANP 88
Query: 453 --QRWISETLVYSNPGVEGTAAQNFSCLIYNADFMNCTWAKGQAAPNDIQYFLYIRDSKK 626
WI L N G A+N +C I++ DF++C+WA G AP D+QY LY+ + +
Sbjct: 89 PFSTWI---LFPENSGKPWAGAENLTCWIHDVDFLSCSWAVGPGAPADVQYDLYLNVANR 145
Query: 627 KIERECPRYLSDS-GTHVGCHLQNISGLSF---YSYFLVNGTSQKSGIQFFDSVLMLKEI 794
+ + EC Y +D+ GT +GC +IS LS S+ LV G S GI D ++ +I
Sbjct: 146 RQQYECLHYKTDAQGTRIGCRFDDISRLSSGSQSSHILVRGRSAAFGIPCTDKFVVFSQI 205
Query: 795 ERYNPPNNITVYCNESHCFIQWEKPRTRKTLSDREFQYQLDIQRQ 929
E PP N+T CN++H F+ W+ ++ +R+F+Y+L IQ++
Sbjct: 206 EILTPP-NMTAKCNKTHSFMHWK----MRSHFNRKFRYELQIQKR 245
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,351,676
Number of extensions: 1205991
Number of successful extensions: 5219
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 5164
Number of HSP's successfully gapped: 18
Length of query: 328
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,901,872
Effective search space: 3352921200
Effective search space used: 3352921200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013317
(984 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896316.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 343 1e-91
gb|GL896464.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 214 7e-53
>gb|GL896316.1| Sus scrofa unplaced genomic scaffold chrU_scaffold669
Length = 12820
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 623 gaagaaaatcgagagagaatgtcctcggtacttatcagactcgggaacccacgtgggatg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3443 gaagaaaatcgagagagaatgtcctcggtacttatcagactcgggaacccacgtgggatg 3502
Query: 683 tcacctccaaaacatctcgggattaagtttttacagttacttcctggttaacggtaccag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3503 tcacctccaaaacatctcgggattaagtttttacagttacttcctggttaacggtaccag 3562
Query: 743 ccaaaagtcaggaatccagttctttgactcggttttgatgttaaaggaaatag 795
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3563 ccaaaagtcaggaatccagttctttgactcggttttgatgttaaaggaaatag 3615
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 488 cccaggtgtggagggcaccgccgcccaaaacttctcctgtcttatctacaacgcggattt 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3126 cccaggtgtggagggcaccgccgcccaaaacttctcctgtcttatctacaacgcggattt 3185
Query: 548 catgaactgcacctgggcaaagggccaagcagccccaaatgacatccaatattttttgta 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3186 catgaactgcacctgggcaaagggccaagcagccccaaatgacatccaatattttttgta 3245
Query: 608 tatacgagactcaaag 623
||||||||||||||||
Sbjct: 3246 tatacgagactcaaag 3261
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 794 agagagatacaaccctcccaacaacatcaccgtgtactgcaatgaatcccactgcttcat 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5616 agagagatacaaccctcccaacaacatcaccgtgtactgcaatgaatcccactgcttcat 5675
Query: 854 ccagtgggaaaagcccaggacccgaaaaacactgtctgacagggagttccagtaccagct 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5676 ccagtgggaaaagcccaggacccgaaaaacactgtctgacagggagttccagtaccagct 5735
Query: 914 ggacatccagagacag 929
||||||||||||||||
Sbjct: 5736 ggacatccagagacag 5751
Score = 246 bits (124), Expect = 2e-62
Identities = 127/128 (99%)
Strand = Plus / Plus
Query: 367 agatcaaaggcaaggaatgtcggtgtaccttccaagaccattctctccacgggggcgttt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agatcaaaggcaaggaatgtcggtgtaccttccaagaccattctctccacgggggcgttt 544
Query: 427 cgttcacggttaaagtaaacatcgaccaaagatggatttcagaaacgctggtctacagca 486
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 545 cgttcacggttaaagtaaacatcggccaaagatggatttcagaaacgctggtctacagca 604
Query: 487 acccaggt 494
||||||||
Sbjct: 605 acccaggt 612
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 928 agagcaatatcagacgcagtgaaaatcaactg 959
||||||||||||||||||||||||||||||||
Sbjct: 6288 agagcaatatcagacgcagtgaaaatcaactg 6319
>gb|GL896464.1| Sus scrofa unplaced genomic scaffold chrU_scaffold801
Length = 11266
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 ggaagataccgagctgaaatgtccttgtcatgcaatccgtgcggcagctctcagacgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5923 ggaagataccgagctgaaatgtccttgtcatgcaatccgtgcggcagctctcagacgagg 5982
Query: 61 aagagacctgtcagagggctcagatgtggggacagcgggacacagccc 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5983 aagagacctgtcagagggctcagatgtggggacagcgggacacagccc 6030
Score = 196 bits (99), Expect = 2e-47
Identities = 108/111 (97%)
Strand = Plus / Plus
Query: 222 gatcttcccgccctggaccagaacgccagtctccatgtgacgtttgacccaaagaccatg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10182 gatcttcccgccctggaccagaacgccagtctccatgtgacgtttgacccaaagaccatg 10241
Query: 282 acactaaggtgggactgcagggaaaatgtcacctctgggaagtgcctgatg 332
|||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 10242 acactaaggtgggactgcagggaaaacatcacctctggggagtgcctgatg 10292
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 118 cagtgcttgctcatcccgcaggctgccccaggcgtctcctaacca 162
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9453 cagtgcttgctcatcccgcaggctgccccaggcgtctcctaacca 9497
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,662,270
Number of extensions: 163
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 8
Length of query: 984
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 963
Effective length of database: 2,808,413,156
Effective search space: 2704501869228
Effective search space used: 2704501869228
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)