Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013319
(1118 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543305.2| PREDICTED: similar to integrin-linked kinase-as... 548 e-156
Alignment gi|XP_543574.2| PREDICTED: similar to Ca(2+)/calmodulin-depende... 98 1e-20
Alignment gi|XP_853253.1| PREDICTED: similar to protein phosphatase 1E is... 94 3e-19
Alignment gi|XP_865189.1| PREDICTED: similar to protein phosphatase 1A is... 93 5e-19
Alignment gi|XP_537467.2| PREDICTED: similar to protein phosphatase 1A is... 93 5e-19
Alignment gi|XP_865153.1| PREDICTED: similar to protein phosphatase 1A is... 93 5e-19
Alignment gi|XP_852144.1| PREDICTED: similar to protein phosphatase 1A is... 93 5e-19
Alignment gi|XP_855641.1| PREDICTED: similar to integrin-linked kinase-as... 58 1e-18
Alignment gi|XP_535651.1| PREDICTED: similar to protein phosphatase 1K (P... 91 2e-18
Alignment gi|XP_850909.1| PREDICTED: similar to protein phosphatase 1 (fo... 91 3e-18
>ref|XP_543305.2| PREDICTED: similar to integrin-linked kinase-associated protein
phosphatase 2C isoform 1 isoform 1 [Canis familiaris].
Length = 401
Score = 548 bits (1411), Expect = e-156
Identities = 279/321 (86%), Positives = 281/321 (87%)
Frame = +1
Query: 154 MDLFGDLPEPERSPRPAAGKEAQKGSLLFDXXXXXXXXXXXXXXXXXFDDLPXXXXXXXX 333
MDLFGDLPEPERSPR A GKEAQKG LLFD FDDLP
Sbjct: 1 MDLFGDLPEPERSPRRAVGKEAQKGPLLFDDLPPASSTDSGSGGPLLFDDLPPASSGDSG 60
Query: 334 XXXXXXXQTGKNEGKGAKRKTSEEEKNGSEELVEKKVCKASSAIFGLKGYVAERKGEREE 513
QT K+EGKGAKRK SEEEKNGSEELVEKKVCKASS IFGLKGYVAERKGEREE
Sbjct: 61 PLDTSMSQTVKSEGKGAKRKASEEEKNGSEELVEKKVCKASSVIFGLKGYVAERKGEREE 120
Query: 514 MQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDV 693
MQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDV
Sbjct: 121 MQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDV 180
Query: 694 ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRAI 873
ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDN LYIANLGDSRAI
Sbjct: 181 ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNILYIANLGDSRAI 240
Query: 874 LCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKR 1053
LCR+NEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKR
Sbjct: 241 LCRFNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKR 300
Query: 1054 CGVTSVPDIRRCQLTPXDRFI 1116
CGVTSVPDIRRCQLTP DRFI
Sbjct: 301 CGVTSVPDIRRCQLTPNDRFI 321
>ref|XP_543574.2| PREDICTED: similar to Ca(2+)/calmodulin-dependent protein kinase
phosphatase (CaM-kinase phosphatase) (CaMKPase) (Partner
of PIX 2) (hFEM-2) (Protein phosphatase 1F) [Canis
familiaris].
Length = 484
Score = 98.2 bits (243), Expect = 1e-20
Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 3/184 (1%)
Frame = +1
Query: 496 KGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRK 675
+ R +M+D HV L + S + R +YFAVFDGHGG+ A+++AA ++H NL R+
Sbjct: 202 RNTRRKMEDRHVCLPAFNQ-LFGLSDPVDR-AYFAVFDGHGGVDAAQYAAVHVHTNLARQ 259
Query: 676 FPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANL 855
+ L + F+HTDE FL +A ++ + G+T C L V TL+IA L
Sbjct: 260 ------PELLTDPAGALREAFRHTDEMFLWKAKRER--LQSGTTGVCALIVGKTLHIAWL 311
Query: 856 GDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRD---GRVLGVLEVSR 1026
GDS+ IL Q+ + L + H P + +E+ RI+ GG V RV G L VSR
Sbjct: 312 GDSQVILV------QQGQVVKLMEPHRPERQDEKERIEALGGFVSHMDCWRVNGTLAVSR 365
Query: 1027 SIGD 1038
+IGD
Sbjct: 366 AIGD 369
>ref|XP_853253.1| PREDICTED: similar to protein phosphatase 1E isoform 1 [Canis
familiaris].
Length = 755
Score = 93.6 bits (231), Expect = 3e-19
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 27/243 (11%)
Frame = +1
Query: 403 EEKNGSEELVEKKVCKASSAIFG---------LKGYVAER-------------KGEREEM 516
+E +G+E VE + K + ++F +K + R K R +M
Sbjct: 184 KETDGTEGTVEIETMKLARSVFSKLHEICCSWVKDFPLRRRPQLYYETSIHAIKNMRRKM 243
Query: 517 QDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRK--FPKGD 690
+D HV + D +YFAVFDGHGG+ A+ +A+ +LH NL+R+ FP
Sbjct: 244 EDKHVCIPDFNMLFNLEDQ--EEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQEMFPHDP 301
Query: 691 VISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRA 870
L F+ TDE F+++A+ + + + G+T N L++A +GDS+
Sbjct: 302 A--------EALCRAFRVTDERFVQKAA--RESLRCGTTGVVTFIRGNMLHVAWVGDSQV 351
Query: 871 ILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNV---RDGRVLGVLEVSRSIGDG 1041
+L R K A+ L K H P + +E+ RI+ GG V RV G L VSR+IGD
Sbjct: 352 MLVR------KGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDA 405
Query: 1042 QYK 1050
++K
Sbjct: 406 EHK 408
>ref|XP_865189.1| PREDICTED: similar to protein phosphatase 1A isoform 1 isoform 6
[Canis familiaris].
Length = 392
Score = 92.8 bits (229), Expect = 5e-19
Identities = 70/197 (35%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + + PS L T S+FAV+DGH G + +K+ +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVIGL------PSGLETW-SFFAVYDGHAGSQVAKYCCE 73
Query: 649 NLHQNLIRKFP-KGDV--ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCV 819
+L ++ KG SVE VK + F DE + + A + GSTA V
Sbjct: 74 HLLDHITNNQDFKGSAGAPSVEN-VKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGV 132
Query: 820 LAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGR 999
L Y N GDSR +LCR + +++H P+ E+ RIQ AGG+V R
Sbjct: 133 LISPQHTYFINCGDSRGLLCRNRKVH------FFTQDHKPSNPLEKERIQNAGGSVMIQR 186
Query: 1000 VLGVLEVSRSIGDGQYK 1050
V G L VSR++GD YK
Sbjct: 187 VNGSLAVSRALGDFDYK 203
>ref|XP_537467.2| PREDICTED: similar to protein phosphatase 1A isoform 1 isoform 2
[Canis familiaris].
Length = 382
Score = 92.8 bits (229), Expect = 5e-19
Identities = 70/197 (35%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + + PS L T S+FAV+DGH G + +K+ +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVIGL------PSGLETW-SFFAVYDGHAGSQVAKYCCE 73
Query: 649 NLHQNLIRKFP-KGDV--ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCV 819
+L ++ KG SVE VK + F DE + + A + GSTA V
Sbjct: 74 HLLDHITNNQDFKGSAGAPSVEN-VKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGV 132
Query: 820 LAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGR 999
L Y N GDSR +LCR + +++H P+ E+ RIQ AGG+V R
Sbjct: 133 LISPQHTYFINCGDSRGLLCRNRKVH------FFTQDHKPSNPLEKERIQNAGGSVMIQR 186
Query: 1000 VLGVLEVSRSIGDGQYK 1050
V G L VSR++GD YK
Sbjct: 187 VNGSLAVSRALGDFDYK 203
>ref|XP_865153.1| PREDICTED: similar to protein phosphatase 1A isoform 2 isoform 5
[Canis familiaris].
Length = 324
Score = 92.8 bits (229), Expect = 5e-19
Identities = 70/197 (35%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + + PS L T S+FAV+DGH G + +K+ +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVIGL------PSGLETW-SFFAVYDGHAGSQVAKYCCE 73
Query: 649 NLHQNLIRKFP-KGDV--ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCV 819
+L ++ KG SVE VK + F DE + + A + GSTA V
Sbjct: 74 HLLDHITNNQDFKGSAGAPSVEN-VKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGV 132
Query: 820 LAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGR 999
L Y N GDSR +LCR + +++H P+ E+ RIQ AGG+V R
Sbjct: 133 LISPQHTYFINCGDSRGLLCRNRKVH------FFTQDHKPSNPLEKERIQNAGGSVMIQR 186
Query: 1000 VLGVLEVSRSIGDGQYK 1050
V G L VSR++GD YK
Sbjct: 187 VNGSLAVSRALGDFDYK 203
>ref|XP_852144.1| PREDICTED: similar to protein phosphatase 1A isoform 1 isoform 3
[Canis familiaris].
Length = 388
Score = 92.8 bits (229), Expect = 5e-19
Identities = 70/197 (35%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + + PS L T S+FAV+DGH G + +K+ +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVIGL------PSGLETW-SFFAVYDGHAGSQVAKYCCE 73
Query: 649 NLHQNLIRKFP-KGDV--ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCV 819
+L ++ KG SVE VK + F DE + + A + GSTA V
Sbjct: 74 HLLDHITNNQDFKGSAGAPSVEN-VKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGV 132
Query: 820 LAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGR 999
L Y N GDSR +LCR + +++H P+ E+ RIQ AGG+V R
Sbjct: 133 LISPQHTYFINCGDSRGLLCRNRKVH------FFTQDHKPSNPLEKERIQNAGGSVMIQR 186
Query: 1000 VLGVLEVSRSIGDGQYK 1050
V G L VSR++GD YK
Sbjct: 187 VNGSLAVSRALGDFDYK 203
>ref|XP_855641.1| PREDICTED: similar to integrin-linked kinase-associated protein
phosphatase 2C isoform 2 isoform 3 [Canis familiaris].
Length = 77
Score = 58.2 bits (139), Expect(2) = 1e-18
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = +1
Query: 154 MDLFGDLPEPERSPRPAAGKEAQKGSLLFD 243
MDLFGDLPEPERSPR A GKEAQKG LLFD
Sbjct: 1 MDLFGDLPEPERSPRRAVGKEAQKGPLLFD 30
Score = 53.9 bits (128), Expect(2) = 1e-18
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +2
Query: 266 LTQDQGDLCFLMISHQPAVAMQVLSTLRRPRR 361
L+Q QGDLCFLMISHQPAVA+QVL T R PRR
Sbjct: 46 LSQGQGDLCFLMISHQPAVAIQVLLTRRCPRR 77
>ref|XP_535651.1| PREDICTED: similar to protein phosphatase 1K (PP2C domain containing)
isoform 1 [Canis familiaris].
Length = 372
Score = 91.3 bits (225), Expect = 2e-18
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 8/232 (3%)
Frame = +1
Query: 436 KKVCKASSAIFGLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGH 615
K + K S G ++ +RK + A +T+E V YFAV+DGH
Sbjct: 85 KPIPKISLENVGCASHIGKRKENEDRFDSAQ-----LTDE----------VLYFAVYDGH 129
Query: 616 GGIRASKFAAQNLHQNLIRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQA--SSQKPA 789
GG A+ F ++ ++ PK EK ++ L F D+ F + A S+
Sbjct: 130 GGPAAADFCHTHMETCIMDLLPK------EKNLETVLTLAFLEIDKAFARHAHLSADATL 183
Query: 790 WKDGSTATCVLAVDN-TLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRI 966
G+TAT L D L +A++GDSRAILCR K + L+ +H P + +E+ RI
Sbjct: 184 LTSGTTATVALVRDGIELVVASVGDSRAILCR------KGKPMKLTIDHTPERKDEKERI 237
Query: 967 QKAGG-----NVRDGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPXD 1107
+K GG ++ V G L ++RS+GD K GV + P+ +R +L D
Sbjct: 238 KKCGGFVAWNSLGQPHVNGRLAMTRSLGDLDLKTSGVIAEPETKRIKLHHAD 289
>ref|XP_850909.1| PREDICTED: similar to protein phosphatase 1 (formerly 2C)-like [Canis
familiaris].
Length = 360
Score = 90.5 bits (223), Expect = 3e-18
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 11/205 (5%)
Frame = +1
Query: 496 KGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNL--- 666
+G R+ M+D +L D+ + P S F +FDGHGG A+++ L + L
Sbjct: 99 QGRRDHMEDRFEVLTDLANKTHP--------SIFGIFDGHGGETAAEYVKSRLPEALKQH 150
Query: 667 ---IRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAV--D 831
K + V+S + +++ +L D E L++ + D + TC++A+ D
Sbjct: 151 LQDYEKDKENSVLSYQTILEQQILSI----DREMLEKLTVSY----DEAGTTCLIALLSD 202
Query: 832 NTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRV 1002
L +AN+GDSR +LC + A+ LS +H P Q +ER RI++AGG + RV
Sbjct: 203 KDLTVANVGDSRGVLC-----DKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRV 257
Query: 1003 LGVLEVSRSIGDGQYKRCGVTSVPD 1077
G+L +SRS+GD K V +PD
Sbjct: 258 QGILAMSRSLGDYPLKNLNVV-IPD 281
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,251,440
Number of extensions: 856582
Number of successful extensions: 3658
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3583
Number of HSP's successfully gapped: 29
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013319
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013319
(1118 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069123.1| integrin-linked kinase-associated serine/thr... 518 e-147
Alignment gi|NP_776854.1| protein phosphatase 1A [Bos taurus]. 94 3e-19
Alignment gi|XP_610559.4| PREDICTED: protein phosphatase 1F-like [Bos tau... 94 3e-19
Alignment gi|XP_002695648.1| PREDICTED: protein phosphatase 1F-like [Bos ... 93 4e-19
Alignment gi|XP_002694747.1| PREDICTED: protein phosphatase 1F-like [Bos ... 92 1e-18
Alignment gi|XP_875630.3| PREDICTED: protein phosphatase 1F-like [Bos tau... 92 1e-18
Alignment gi|NP_001039939.1| protein phosphatase 1K, mitochondrial precur... 90 3e-18
Alignment gi|NP_001092588.1| protein phosphatase 1L [Bos taurus]. 90 4e-18
Alignment gi|NP_776855.1| protein phosphatase 1B [Bos taurus]. 82 7e-16
Alignment gi|XP_001789385.1| PREDICTED: protein phosphatase 1B-like [Bos ... 82 7e-16
>ref|NP_001069123.1| integrin-linked kinase-associated serine/threonine phosphatase 2C
[Bos taurus].
Length = 370
Score = 518 bits (1335), Expect = e-147
Identities = 268/321 (83%), Positives = 273/321 (85%)
Frame = +1
Query: 154 MDLFGDLPEPERSPRPAAGKEAQKGSLLFDXXXXXXXXXXXXXXXXXFDDLPXXXXXXXX 333
MDLFGDLPEPERSPRPAAG G LLFD DLP
Sbjct: 1 MDLFGDLPEPERSPRPAAGSG---GPLLFD-------------------DLPPASSGDSG 38
Query: 334 XXXXXXXQTGKNEGKGAKRKTSEEEKNGSEELVEKKVCKASSAIFGLKGYVAERKGEREE 513
+ KNEGKGAKRK S+EEKNGSEELVEKKVCKASS IF LKGYVAERKGEREE
Sbjct: 39 SLDTSLSEEVKNEGKGAKRKASDEEKNGSEELVEKKVCKASSVIFSLKGYVAERKGEREE 98
Query: 514 MQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDV 693
MQDAHVILNDIT EC+PPS+L+TRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGD
Sbjct: 99 MQDAHVILNDITAECQPPSALVTRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDG 158
Query: 694 ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRAI 873
ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRAI
Sbjct: 159 ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRAI 218
Query: 874 LCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKR 1053
LCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKR
Sbjct: 219 LCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKR 278
Query: 1054 CGVTSVPDIRRCQLTPXDRFI 1116
CGVTSVPDIRRCQLTP DRFI
Sbjct: 279 CGVTSVPDIRRCQLTPNDRFI 299
>ref|NP_776854.1| protein phosphatase 1A [Bos taurus].
Length = 382
Score = 93.6 bits (231), Expect = 3e-19
Identities = 70/197 (35%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + + PS L T S+FAV+DGH G + +K+ +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVIGL------PSGLETW-SFFAVYDGHAGSQVAKYCCE 73
Query: 649 NLHQNLIRKFP-KGDV--ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCV 819
+L ++ KG SVE VK + F DE + + A + GSTA V
Sbjct: 74 HLLDHITNNQDFKGSAGAPSVEN-VKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGV 132
Query: 820 LAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGR 999
L Y N GDSR +LCR + +++H P+ E+ RIQ AGG+V R
Sbjct: 133 LISPQHTYFINCGDSRGLLCRNRK------VYFFTQDHKPSNPLEKERIQNAGGSVMIQR 186
Query: 1000 VLGVLEVSRSIGDGQYK 1050
V G L VSR++GD YK
Sbjct: 187 VNGSLAVSRALGDFDYK 203
>ref|XP_610559.4| PREDICTED: protein phosphatase 1F-like [Bos taurus].
Length = 610
Score = 93.6 bits (231), Expect = 3e-19
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 27/243 (11%)
Frame = +1
Query: 403 EEKNGSEELVEKKVCKASSAIFG---------LKGYVAER-------------KGEREEM 516
+E +G+E VE + K + ++F +K + R K R +M
Sbjct: 39 KETDGTEGTVEIETVKLARSVFSKLHEICCSWVKDFPLRRRPQLYYETSIHAIKNMRRKM 98
Query: 517 QDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRK--FPKGD 690
+D HV + D +YFAVFDGHGG+ A+ +A+ +LH NL+R+ FP
Sbjct: 99 EDKHVCIPDFNMLFNLEDQ--EEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQETFPHDP 156
Query: 691 VISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRA 870
L F+ TDE F+++A+ + + + G+T N L++A +GDS+
Sbjct: 157 A--------EALCRAFRVTDERFVQKAA--RESLRCGTTGVVTFIRGNMLHVAWVGDSQV 206
Query: 871 ILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNV---RDGRVLGVLEVSRSIGDG 1041
+L R K A+ L K H P + +E+ RI+ GG V RV G L VSR+IGD
Sbjct: 207 MLVR------KGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDA 260
Query: 1042 QYK 1050
++K
Sbjct: 261 EHK 263
>ref|XP_002695648.1| PREDICTED: protein phosphatase 1F-like [Bos taurus].
Length = 602
Score = 93.2 bits (230), Expect = 4e-19
Identities = 66/190 (34%), Positives = 99/190 (52%), Gaps = 5/190 (2%)
Frame = +1
Query: 496 KGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRK 675
K R +M+D HV + D +YFAVFDGHGG+ A+ +A+ +LH NL+R+
Sbjct: 76 KNMRRKMEDKHVCIPDFNMLFNLEDQ--EEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQ 133
Query: 676 --FPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIA 849
FP L F+ TDE F+++A+ + + + G+T N L++A
Sbjct: 134 ETFPHDPA--------EALCRAFRVTDERFVQKAA--RESLRCGTTGVVTFIRGNMLHVA 183
Query: 850 NLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNV---RDGRVLGVLEV 1020
+GDS+ +L R K A+ L K H P + +E+ RI+ GG V RV G L V
Sbjct: 184 WVGDSQVMLVR------KGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSV 237
Query: 1021 SRSIGDGQYK 1050
SR+IGD ++K
Sbjct: 238 SRAIGDAEHK 247
>ref|XP_002694747.1| PREDICTED: protein phosphatase 1F-like [Bos taurus].
Length = 551
Score = 91.7 bits (226), Expect = 1e-18
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 9/216 (4%)
Frame = +1
Query: 496 KGEREEMQDAHVILNDITEECRPPSSLITRV------SYFAVFDGHGGIRASKFAAQNLH 657
+ R M+D HV C P +L+ + +YFAVFDGHGG A+++A+ ++H
Sbjct: 285 RNARRRMEDRHV--------CLPAFNLLFGLEDSVDRAYFAVFDGHGGADAARYASVHVH 336
Query: 658 QNLIRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNT 837
R+ + L F+ TDE FL +A ++ + G+T C L NT
Sbjct: 337 AVAARR------PELAADPAEALRAAFRRTDEMFLWKARRER--LQSGTTGVCALIAGNT 388
Query: 838 LYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRD---GRVLG 1008
L++A LGDS+ +L R + A+ L + H P + +E+ RI+ GG V RV G
Sbjct: 389 LHVAWLGDSQVLLVRQGQ------AVKLMEPHRPERQDEKDRIEALGGFVSHMDCWRVNG 442
Query: 1009 VLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPXDRFI 1116
L VSR+IGD +++ V+ D +LT + ++
Sbjct: 443 TLAVSRAIGD-VFQKPYVSGEADAASWELTGSEEYL 477
>ref|XP_875630.3| PREDICTED: protein phosphatase 1F-like [Bos taurus].
Length = 542
Score = 91.7 bits (226), Expect = 1e-18
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 9/216 (4%)
Frame = +1
Query: 496 KGEREEMQDAHVILNDITEECRPPSSLITRV------SYFAVFDGHGGIRASKFAAQNLH 657
+ R M+D HV C P +L+ + +YFAVFDGHGG A+++A+ ++H
Sbjct: 276 RNARRRMEDRHV--------CLPAFNLLFGLEDSVDRAYFAVFDGHGGADAARYASVHVH 327
Query: 658 QNLIRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNT 837
R+ + L F+ TDE FL +A ++ + G+T C L NT
Sbjct: 328 AVAARR------PELAADPAEALRAAFRRTDEMFLWKARRER--LQSGTTGVCALIAGNT 379
Query: 838 LYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRD---GRVLG 1008
L++A LGDS+ +L R + A+ L + H P + +E+ RI+ GG V RV G
Sbjct: 380 LHVAWLGDSQVLLVRQGQ------AVKLMEPHRPERQDEKDRIEALGGFVSHMDCWRVNG 433
Query: 1009 VLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPXDRFI 1116
L VSR+IGD +++ V+ D +LT + ++
Sbjct: 434 TLAVSRAIGD-VFQKPYVSGEADAASWELTGSEEYL 468
>ref|NP_001039939.1| protein phosphatase 1K, mitochondrial precursor [Bos taurus].
Length = 372
Score = 90.1 bits (222), Expect = 3e-18
Identities = 64/188 (34%), Positives = 97/188 (51%), Gaps = 8/188 (4%)
Frame = +1
Query: 568 SSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDVISVEKTVKRCLLDTFKHT 747
+ L V YFAV+DGHGG A+ F ++ + ++ PK E+ ++ L F
Sbjct: 114 AQLTNEVLYFAVYDGHGGPAAADFCHTHMEKCILDLLPK------EENLETVLTLAFLEI 167
Query: 748 DEEFLKQA--SSQKPAWKDGSTATCVLAVDN-TLYIANLGDSRAILCRYNEESQKHAALS 918
D+ F + A S+ G+TAT L D L IA++GDSRAILCR K +
Sbjct: 168 DKTFARHAHLSADATLLTSGTTATVALLRDGIELVIASVGDSRAILCR------KGKPMK 221
Query: 919 LSKEHNPTQYEERMRIQKAGG-----NVRDGRVLGVLEVSRSIGDGQYKRCGVTSVPDIR 1083
L+ +H P + +E+ RI+K GG ++ V G L ++RS+GD K GV + P+ +
Sbjct: 222 LTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSLGDLDLKTSGVIAEPETK 281
Query: 1084 RCQLTPXD 1107
R +L D
Sbjct: 282 RIKLHHAD 289
>ref|NP_001092588.1| protein phosphatase 1L [Bos taurus].
Length = 360
Score = 89.7 bits (221), Expect = 4e-18
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 11/205 (5%)
Frame = +1
Query: 496 KGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNL--- 666
+G R+ M+D +L D+ + P S F +FDGHGG A+++ L + L
Sbjct: 99 QGRRDHMEDRFEVLMDLANKTHP--------SIFGIFDGHGGETAAEYVKSRLPEALKQH 150
Query: 667 ---IRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAV--D 831
K + V+S + +++ +L D E L++ + D + TC++A+ D
Sbjct: 151 LQDYEKDKENSVLSYQTILEQQILSI----DREMLEKLTVSY----DEAGTTCLIALLSD 202
Query: 832 NTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRV 1002
L +AN+GDSR +LC + A+ LS +H P Q +ER RI++AGG + RV
Sbjct: 203 KDLTVANVGDSRGVLC-----DKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRV 257
Query: 1003 LGVLEVSRSIGDGQYKRCGVTSVPD 1077
G+L +SRS+GD K V +PD
Sbjct: 258 QGILAMSRSLGDYPLKNLNVV-IPD 281
>ref|NP_776855.1| protein phosphatase 1B [Bos taurus].
Length = 387
Score = 82.4 bits (202), Expect = 7e-16
Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + I + S+FAV+DGH G R + + +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVVGIPHG-------LEDWSFFAVYDGHAGSRVANYCST 73
Query: 649 NLHQNLIRKFP------KGDVI--SVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGS 804
+L +++ G + SVE VK + F DE + + + GS
Sbjct: 74 HLLEHITNNEDFRAAGKSGSALEPSVEN-VKNGIRTGFLKIDEYMRNFSDLRNGMDRSGS 132
Query: 805 TATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGN 984
TA V+ +Y N GDSRA+L R + +++H P E+ RIQ AGG+
Sbjct: 133 TAVGVMISPKHIYFINCGDSRAVLYRSGQ------VCFSTQDHKPCNPREKERIQNAGGS 186
Query: 985 VRDGRVLGVLEVSRSIGDGQYK 1050
V RV G L VSR++GD YK
Sbjct: 187 VMIQRVNGSLAVSRALGDYDYK 208
>ref|XP_001789385.1| PREDICTED: protein phosphatase 1B-like [Bos taurus].
Length = 375
Score = 82.4 bits (202), Expect = 7e-16
Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + I + S+FAV+DGH G R + + +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVVGIPHG-------LEDWSFFAVYDGHAGSRVANYCST 73
Query: 649 NLHQNLIRKFP------KGDVI--SVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGS 804
+L +++ G + SVE VK + F DE + + + GS
Sbjct: 74 HLLEHITNNEDFRAAGKSGSALEPSVEN-VKNGIRTGFLKIDEYMRNFSDLRNGMDRSGS 132
Query: 805 TATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGN 984
TA V+ +Y N GDSRA+L R + +++H P E+ RIQ AGG+
Sbjct: 133 TAVGVMISPKHIYFINCGDSRAVLYRSGQ------VCFSTQDHKPCNPREKERIQNAGGS 186
Query: 985 VRDGRVLGVLEVSRSIGDGQYK 1050
V RV G L VSR++GD YK
Sbjct: 187 VMIQRVNGSLAVSRALGDYDYK 208
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,166,561
Number of extensions: 943336
Number of successful extensions: 3256
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3221
Number of HSP's successfully gapped: 19
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013319
(1118 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133820.2| PREDICTED: integrin-linked kinase-associated... 508 e-144
Alignment gi|XP_003131709.1| PREDICTED: protein phosphatase 1E [Sus scrof... 94 1e-19
Alignment gi|XP_003353545.1| PREDICTED: hypothetical protein LOC100623395... 93 3e-19
Alignment gi|XP_001926892.2| PREDICTED: protein phosphatase 1F [Sus scrof... 91 9e-19
Alignment gi|XP_003125227.1| PREDICTED: LOW QUALITY PROTEIN: protein phos... 82 4e-16
Alignment gi|XP_003359741.1| PREDICTED: integrin-linked kinase-associated... 70 3e-12
Alignment gi|XP_003359225.1| PREDICTED: protein phosphatase 1F-like [Sus ... 70 3e-12
Alignment gi|XP_003358705.1| PREDICTED: protein phosphatase 1L-like [Sus ... 65 9e-11
Alignment gi|XP_003358180.1| PREDICTED: protein phosphatase 1D-like [Sus ... 55 9e-08
Alignment gi|XP_003132302.2| PREDICTED: protein phosphatase 1M-like [Sus ... 52 5e-07
>ref|XP_003133820.2| PREDICTED: integrin-linked kinase-associated serine/threonine
phosphatase 2C isoform 1 [Sus scrofa].
Length = 348
Score = 508 bits (1308), Expect = e-144
Identities = 253/254 (99%), Positives = 253/254 (99%)
Frame = +1
Query: 355 QTGKNEGKGAKRKTSEEEKNGSEELVEKKVCKASSAIFGLKGYVAERKGEREEMQDAHVI 534
QTGKNEGKGAKRKTSEEEKNGSEELVEKKVCKASSAIFGLKGYVAERKGEREEMQDAHVI
Sbjct: 24 QTGKNEGKGAKRKTSEEEKNGSEELVEKKVCKASSAIFGLKGYVAERKGEREEMQDAHVI 83
Query: 535 LNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDVISVEKTV 714
LNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDVISVEKTV
Sbjct: 84 LNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDVISVEKTV 143
Query: 715 KRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRAILCRYNEE 894
KRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRAILCRYNEE
Sbjct: 144 KRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRAILCRYNEE 203
Query: 895 SQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKRCGVTSVP 1074
SQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKRCGVTSVP
Sbjct: 204 SQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKRCGVTSVP 263
Query: 1075 DIRRCQLTPXDRFI 1116
DIRRCQLTP DRFI
Sbjct: 264 DIRRCQLTPNDRFI 277
>ref|XP_003131709.1| PREDICTED: protein phosphatase 1E [Sus scrofa].
Length = 750
Score = 94.0 bits (232), Expect = 1e-19
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 27/243 (11%)
Frame = +1
Query: 403 EEKNGSEELVEKKVCKASSAIFG---------LKGYVAER-------------KGEREEM 516
+E +G+E VE + K + ++F +K + R K R +M
Sbjct: 180 KEMDGTEGTVEIETVKLARSVFSKLHEICCSWVKDFPLHRRPQLYYETSIHAIKNMRRKM 239
Query: 517 QDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRK--FPKGD 690
+D HV + D +YFAVFDGHGG+ A+ +A+ +LH NL+R+ FP
Sbjct: 240 EDKHVCIPDFNMLFNLEDQ--EEQAYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPHDP 297
Query: 691 VISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRA 870
L F+ TDE F+++A+ + + + G+T N L++A +GDS+
Sbjct: 298 A--------EALCRAFRVTDERFVQKAA--RESLRCGTTGVVTFIRGNMLHVAWVGDSQV 347
Query: 871 ILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNV---RDGRVLGVLEVSRSIGDG 1041
+L R K A+ L K H P + +E+ RI+ GG V RV G L VSR+IGD
Sbjct: 348 MLVR------KGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDA 401
Query: 1042 QYK 1050
++K
Sbjct: 402 EHK 404
>ref|XP_003353545.1| PREDICTED: hypothetical protein LOC100623395 [Sus scrofa].
Length = 682
Score = 92.8 bits (229), Expect = 3e-19
Identities = 70/197 (35%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + + PS L T S+FAV+DGH G + +K+ +
Sbjct: 72 GLRYGLSSMQGWRVEMEDAHTAVIGL------PSGLETW-SFFAVYDGHAGSQVAKYCCE 124
Query: 649 NLHQNLIRKFP-KGDV--ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCV 819
+L ++ KG SVE VK + F DE + + A + GSTA V
Sbjct: 125 HLLDHITNNQDFKGSAGAPSVEN-VKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGV 183
Query: 820 LAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGR 999
L Y N GDSR +LCR + +++H P+ E+ RIQ AGG+V R
Sbjct: 184 LISPQHTYFINCGDSRGLLCRNRKVH------FFTQDHKPSNPLEKERIQNAGGSVMIQR 237
Query: 1000 VLGVLEVSRSIGDGQYK 1050
V G L VSR++GD YK
Sbjct: 238 VNGSLAVSRALGDFDYK 254
>ref|XP_001926892.2| PREDICTED: protein phosphatase 1F [Sus scrofa].
Length = 436
Score = 91.3 bits (225), Expect = 9e-19
Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 3/210 (1%)
Frame = +1
Query: 496 KGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRK 675
+ R M+D HV L + S+ +YFAVFDGHGG+ A+++A+ ++H N R+
Sbjct: 159 RNARRRMEDRHVCLPAFNQLFGLSDSVDR--AYFAVFDGHGGVDAARYASVHVHANAARQ 216
Query: 676 FPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANL 855
+ L F+ TDE FL++A ++ + G+T C L +TL++A L
Sbjct: 217 ------PELPTDPAAALRAAFRCTDEMFLRKAKRER--LQSGTTGVCALIAGSTLHVAWL 268
Query: 856 GDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGG---NVRDGRVLGVLEVSR 1026
GDS+ +L Q+ + L + H P + +E+ RI+ GG +V RV G L VSR
Sbjct: 269 GDSQVLLV------QQGQVVKLMEPHRPERQDEKDRIEALGGFVSHVDCWRVNGTLAVSR 322
Query: 1027 SIGDGQYKRCGVTSVPDIRRCQLTPXDRFI 1116
+IGD +++ V+ D +LT + ++
Sbjct: 323 AIGD-VFQKPYVSGEADAASRELTGSEDYL 351
>ref|XP_003125227.1| PREDICTED: LOW QUALITY PROTEIN: protein phosphatase 1B-like [Sus
scrofa].
Length = 479
Score = 82.4 bits (202), Expect = 4e-16
Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + I + S+FAV+DGH G R + + +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVVGIPHG-------LEDWSFFAVYDGHAGSRVANYCST 73
Query: 649 NLHQNLIRKFP------KGDVI--SVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGS 804
+L +++ G + SVE VK + F DE + + + GS
Sbjct: 74 HLLEHITNNEDFRAAGKSGSALEPSVEN-VKNGIRTGFLKIDEYMRNFSDLRNGMDRSGS 132
Query: 805 TATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGN 984
TA V+ +Y N GDSRA+L R + +++H P E+ RIQ AGG+
Sbjct: 133 TAVGVMISPKHIYFINCGDSRAVLYRNGQ------VCFSTQDHKPCNPREKERIQNAGGS 186
Query: 985 VRDGRVLGVLEVSRSIGDGQYK 1050
V RV G L VSR++GD YK
Sbjct: 187 VMIQRVNGSLAVSRALGDYDYK 208
>ref|XP_003359741.1| PREDICTED: integrin-linked kinase-associated serine/threonine
phosphatase 2C-like [Sus scrofa].
Length = 90
Score = 69.7 bits (169), Expect = 3e-12
Identities = 35/52 (67%), Positives = 35/52 (67%)
Frame = +1
Query: 154 MDLFGDLPEPERSPRPAAGKEAQKGSLLFDXXXXXXXXXXXXXXXXXFDDLP 309
MDLFGDLPEPERSPRPAAGKEAQKGSLLFD FDDLP
Sbjct: 1 MDLFGDLPEPERSPRPAAGKEAQKGSLLFDGLPPASSADSGSGGPLLFDDLP 52
>ref|XP_003359225.1| PREDICTED: protein phosphatase 1F-like [Sus scrofa].
Length = 665
Score = 69.7 bits (169), Expect = 3e-12
Identities = 46/148 (31%), Positives = 75/148 (50%)
Frame = +1
Query: 496 KGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRK 675
+ R M+D HV L + S+ +YFAVFDGHGG+ A+++A+ ++H N R+
Sbjct: 159 RNARRRMEDRHVCLPAFNQLFGLSDSVDR--AYFAVFDGHGGVDAARYASVHVHANAARQ 216
Query: 676 FPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANL 855
+ L F+ TDE FL++A ++ + G+T C L +TL++A L
Sbjct: 217 ------PELPTDPAAALRAAFRCTDEMFLRKAKRER--LQSGTTGVCALIAGSTLHVAWL 268
Query: 856 GDSRAILCRYNEESQKHAALSLSKEHNP 939
GDS+ +L Q+ + L + H P
Sbjct: 269 GDSQVLLV------QQGQVVKLMEPHRP 290
>ref|XP_003358705.1| PREDICTED: protein phosphatase 1L-like [Sus scrofa].
Length = 241
Score = 64.7 bits (156), Expect = 9e-11
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Frame = +1
Query: 796 DGSTATCVLAV--DNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQ 969
D + TC++A+ D L +AN+GDSR +LC + A+ LS +H P Q +ER RI+
Sbjct: 70 DEAGTTCLIALLSDKDLTVANVGDSRGVLC-----DKDGNAIPLSHDHKPYQLKERKRIK 124
Query: 970 KAGGNVR---DGRVLGVLEVSRSIGDGQYKRCGVTSVPD 1077
+AGG + RV G+L +SRS+GD K V +PD
Sbjct: 125 RAGGFISFNGSWRVQGILAMSRSLGDYPLKNLNVV-IPD 162
>ref|XP_003358180.1| PREDICTED: protein phosphatase 1D-like [Sus scrofa].
Length = 298
Score = 54.7 bits (130), Expect = 9e-08
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Frame = +1
Query: 556 CRPPSSLITRVSYFAVFDGHGGIRASKFAAQNL------HQNLIRKFPKGDVISVEKTVK 717
CR SS V++FAV DGHGG A++FA ++L + P ++ K
Sbjct: 92 CRRRSS----VAFFAVCDGHGGREAAQFAREHLWGFIKKQKGFTSSEPAKVCAAIRKGFL 147
Query: 718 RCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRAILCRYNEES 897
C L +K E + + P+ G+TA+ V+ +Y+A++GDS +L ++
Sbjct: 148 ACHLAMWKKLAE--WPKTMTGLPS-TSGTTASVVIIRGLKMYVAHVGDSGVVLGIQDDPK 204
Query: 898 QKH-AALSLSKEHNPTQYEERMRIQKAGGNV 987
A+ ++++H P +ER RI+ GG+V
Sbjct: 205 DDFIRAVEVTQDHKPELPKERERIEGLGGSV 235
>ref|XP_003132302.2| PREDICTED: protein phosphatase 1M-like [Sus scrofa].
Length = 427
Score = 52.4 bits (124), Expect = 5e-07
Identities = 48/155 (30%), Positives = 63/155 (40%), Gaps = 28/155 (18%)
Frame = +1
Query: 592 YFAVFDGHGGIRASKFAAQNLHQNLIRK----------------------------FPKG 687
Y+A+FDGHGG A+ AA LH L R+ F +
Sbjct: 124 YWALFDGHGGPAAAILAANTLHSCLRRQLEAVVDGMMATQPPMHLSGCCICPSDPQFVEE 183
Query: 688 DVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSR 867
I E V L F+ DE ++ + G TA +++ LY+AN GDSR
Sbjct: 184 KGIRTEDLVIGALESAFQECDEVIGRELEASGQV--GGCTALVAVSLQGKLYVANAGDSR 241
Query: 868 AILCRYNEESQKHAALSLSKEHNPTQYEERMRIQK 972
AIL R +E LS E P ER RIQ+
Sbjct: 242 AILVRRDE------VRPLSSEFTPE--TERQRIQQ 268
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,687,619
Number of extensions: 769715
Number of successful extensions: 2135
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2117
Number of HSP's successfully gapped: 12
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013319
(1118 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075832.1| integrin-linked kinase-associated serine/threon... 534 e-152
Alignment gi|NP_796141.2| protein phosphatase 1E [Mus musculus]. 94 2e-19
Alignment gi|NP_032936.1| protein phosphatase 1A [Mus musculus]. 92 6e-19
Alignment gi|NP_808359.1| probable protein phosphatase 1N [Mus musculus]. 90 3e-18
Alignment gi|NP_848841.2| protein phosphatase 1L [Mus musculus]. 90 4e-18
Alignment gi|NP_789803.1| protein phosphatase 1F [Mus musculus]. 88 1e-17
Alignment gi|NP_001152970.1| protein phosphatase 1B isoform 4 [Mus muscul... 87 2e-17
Alignment gi|NP_001152969.1| protein phosphatase 1B isoform 3 [Mus muscul... 87 2e-17
Alignment gi|NP_001152968.1| protein phosphatase 1B isoform 1 [Mus muscul... 87 2e-17
Alignment gi|NP_035281.1| protein phosphatase 1B isoform 2 [Mus musculus]. 87 2e-17
>ref|NP_075832.1| integrin-linked kinase-associated serine/threonine phosphatase 2C
[Mus musculus].
Length = 392
Score = 534 bits (1376), Expect = e-152
Identities = 270/321 (84%), Positives = 276/321 (85%)
Frame = +1
Query: 154 MDLFGDLPEPERSPRPAAGKEAQKGSLLFDXXXXXXXXXXXXXXXXXFDDLPXXXXXXXX 333
MDLFGDLPEPER+PRP+AGKEAQ +LF+ FDDLP
Sbjct: 1 MDLFGDLPEPERAPRPSAGKEAQGRPVLFEDLPPASSTDSGSGGPLLFDDLPPAASGNSG 60
Query: 334 XXXXXXXQTGKNEGKGAKRKTSEEEKNGSEELVEKKVCKASSAIFGLKGYVAERKGEREE 513
Q K EGKGAKRK EEEKNG EELVEKKVCKASS IFGLKGYVAERKGEREE
Sbjct: 61 SLATSGSQVVKTEGKGAKRKAPEEEKNGGEELVEKKVCKASSVIFGLKGYVAERKGEREE 120
Query: 514 MQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDV 693
MQDAHVILNDIT+EC PPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGD+
Sbjct: 121 MQDAHVILNDITQECNPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDI 180
Query: 694 ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRAI 873
ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDN LYIANLGDSRAI
Sbjct: 181 ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNILYIANLGDSRAI 240
Query: 874 LCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKR 1053
LCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKR
Sbjct: 241 LCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKR 300
Query: 1054 CGVTSVPDIRRCQLTPXDRFI 1116
CGVTSVPDIRRCQLTP DRFI
Sbjct: 301 CGVTSVPDIRRCQLTPNDRFI 321
>ref|NP_796141.2| protein phosphatase 1E [Mus musculus].
Length = 749
Score = 94.0 bits (232), Expect = 2e-19
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 27/243 (11%)
Frame = +1
Query: 403 EEKNGSEELVEKKVCKASSAIFG---------LKGYVAER-------------KGEREEM 516
+E +G+E VE + K + ++F +K + R K R +M
Sbjct: 182 KETDGTEGTVEIETVKLARSVFSKLHEICCSWVKDFPLRRRPQIYYETSIHAIKNMRRKM 241
Query: 517 QDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRK--FPKGD 690
+D HV + D +YFAVFDGHGG+ A+ +A+ +LH NL+R+ FP
Sbjct: 242 EDKHVCIPDFNMLFNLEDQ--EEQAYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPHDP 299
Query: 691 VISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRA 870
L F+ TDE F+++A+ + + + G+T N L++A +GDS+
Sbjct: 300 A--------EALCRAFRVTDERFVQKAA--RESLRCGTTGVVTFIRGNMLHVAWVGDSQV 349
Query: 871 ILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNV---RDGRVLGVLEVSRSIGDG 1041
+L R K A+ L K H P + +E+ RI+ GG V RV G L VSR+IGD
Sbjct: 350 MLVR------KGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDA 403
Query: 1042 QYK 1050
++K
Sbjct: 404 EHK 406
>ref|NP_032936.1| protein phosphatase 1A [Mus musculus].
Length = 382
Score = 92.4 bits (228), Expect = 6e-19
Identities = 68/197 (34%), Positives = 98/197 (49%), Gaps = 3/197 (1%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + + PS L T S+FAV+DGH G + +K+ +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVIGL------PSGLETW-SFFAVYDGHAGSQVAKYCCE 73
Query: 649 NLHQNLIRKFP---KGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCV 819
+L ++ SVE VK + F DE + + A + GSTA V
Sbjct: 74 HLLDHITNNQDFRGSAGAPSVEN-VKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGV 132
Query: 820 LAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGR 999
L Y N GDSR +LCR + +++H P+ E+ RIQ AGG+V R
Sbjct: 133 LISPQHTYFINCGDSRGLLCRNRKVH------FFTQDHKPSNPLEKERIQNAGGSVMIQR 186
Query: 1000 VLGVLEVSRSIGDGQYK 1050
V G L VSR++GD YK
Sbjct: 187 VNGSLAVSRALGDFDYK 203
>ref|NP_808359.1| probable protein phosphatase 1N [Mus musculus].
Length = 404
Score = 90.1 bits (222), Expect = 3e-18
Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 8/235 (3%)
Frame = +1
Query: 436 KKVCKASSAIFGLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGH 615
+++ + ++A GL+ + +G R M+DAH + L + ++FAV DGH
Sbjct: 46 QRLHRGAAATSGLRFGASAVQGWRARMEDAHCARLALP-------GLPSGWAFFAVLDGH 98
Query: 616 GGIRASKFAAQNLHQNLIRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWK 795
GG RA++F A++L ++ + G V++ L F D + P
Sbjct: 99 GGARAARFGARHLPGYVLGEL--GPAPQEPDGVRQALRSAFLQADAQLSALWPRGDPG-- 154
Query: 796 DGSTATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKA 975
GSTA +L LY+A+ GDSRA+L S+ + +++H P + ER RI A
Sbjct: 155 -GSTAVALLVSPRFLYLAHCGDSRALL------SRSGSVAFCTEDHRPHRPRERERIHDA 207
Query: 976 GGNVRDGRVLGVLEVSRSIGDGQYKRCG--------VTSVPDIRRCQLTPXDRFI 1116
GG VR RV G L VSR++GD YK+ V++ P++ D F+
Sbjct: 208 GGTVRRRRVEGSLAVSRALGDFAYKQAPGRPPELQLVSAEPEVAALARQDEDEFV 262
>ref|NP_848841.2| protein phosphatase 1L [Mus musculus].
Length = 360
Score = 89.7 bits (221), Expect = 4e-18
Identities = 66/202 (32%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Frame = +1
Query: 496 KGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNL--- 666
+G R+ M+D +L D+ + P S F +FDGHGG A+++ L + L
Sbjct: 99 QGRRDHMEDRFEVLTDLANKTHP--------SIFGIFDGHGGETAAEYVKSRLPEALKQH 150
Query: 667 IRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAV--DNTL 840
++ + K SV T + L D E L++ + D + TC++A+ D L
Sbjct: 151 LQDYEKDKENSV-LTYQTILEQQILSIDREMLEKLTVSY----DEAGTTCLIALLSDKDL 205
Query: 841 YIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRVLGV 1011
+AN+GDSR +LC + A+ LS +H P Q +ER RI++AGG + RV G+
Sbjct: 206 TVANVGDSRGVLC-----DKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGI 260
Query: 1012 LEVSRSIGDGQYKRCGVTSVPD 1077
L +SRS+GD K V +PD
Sbjct: 261 LAMSRSLGDYPLKNLNVV-IPD 281
>ref|NP_789803.1| protein phosphatase 1F [Mus musculus].
Length = 452
Score = 87.8 bits (216), Expect = 1e-17
Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 3/210 (1%)
Frame = +1
Query: 496 KGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRK 675
+ R +M+D HV L S+ +YFAVFDGHGG+ A+++A+ ++H N +
Sbjct: 160 RNTRRKMEDRHVSLPAFNHLFGLSDSV--HRAYFAVFDGHGGVDAARYASVHVHTNASHQ 217
Query: 676 FPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANL 855
+ L + F+ TDE FL++A ++ + G+T C L L++A L
Sbjct: 218 ------PELRTNPAAALKEAFRLTDEMFLQKAKRER--LQSGTTGVCALIAGAALHVAWL 269
Query: 856 GDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRVLGVLEVSR 1026
GDS+ IL Q+ + L + H P + +E+ RI+ GG V RV G L VSR
Sbjct: 270 GDSQVILV------QQGRVVKLMEPHKPERQDEKARIEALGGFVSLMDCWRVNGTLAVSR 323
Query: 1027 SIGDGQYKRCGVTSVPDIRRCQLTPXDRFI 1116
+IGD +++ V+ D +LT + ++
Sbjct: 324 AIGD-VFQKPYVSGEADAASRELTGSEDYL 352
>ref|NP_001152970.1| protein phosphatase 1B isoform 4 [Mus musculus].
Length = 393
Score = 87.0 bits (214), Expect = 2e-17
Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 8/202 (3%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + I + S+FAV+DGH G R + + +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVVGIPHG-------LDNWSFFAVYDGHAGSRVANYCST 73
Query: 649 NLHQNLIRK--FPKGDVI------SVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGS 804
+L +++ F D SVE +VK + F DE + + + GS
Sbjct: 74 HLLEHITTNEDFRAADKSGSALEPSVE-SVKTGIRTGFLKIDEYMRNFSDLRNGMDRSGS 132
Query: 805 TATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGN 984
TA V+ +Y N GDSRA+LCR + +++H P E+ RIQ AGG+
Sbjct: 133 TAVGVMVSPTHMYFINCGDSRAVLCRNGQ------VCFSTQDHKPCNPVEKERIQNAGGS 186
Query: 985 VRDGRVLGVLEVSRSIGDGQYK 1050
V RV G L VSR++GD YK
Sbjct: 187 VMIQRVNGSLAVSRALGDYDYK 208
>ref|NP_001152969.1| protein phosphatase 1B isoform 3 [Mus musculus].
Length = 390
Score = 87.0 bits (214), Expect = 2e-17
Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 8/202 (3%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + I + S+FAV+DGH G R + + +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVVGIPHG-------LDNWSFFAVYDGHAGSRVANYCST 73
Query: 649 NLHQNLIRK--FPKGDVI------SVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGS 804
+L +++ F D SVE +VK + F DE + + + GS
Sbjct: 74 HLLEHITTNEDFRAADKSGSALEPSVE-SVKTGIRTGFLKIDEYMRNFSDLRNGMDRSGS 132
Query: 805 TATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGN 984
TA V+ +Y N GDSRA+LCR + +++H P E+ RIQ AGG+
Sbjct: 133 TAVGVMVSPTHMYFINCGDSRAVLCRNGQ------VCFSTQDHKPCNPVEKERIQNAGGS 186
Query: 985 VRDGRVLGVLEVSRSIGDGQYK 1050
V RV G L VSR++GD YK
Sbjct: 187 VMIQRVNGSLAVSRALGDYDYK 208
>ref|NP_001152968.1| protein phosphatase 1B isoform 1 [Mus musculus].
Length = 477
Score = 87.0 bits (214), Expect = 2e-17
Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 8/202 (3%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + I + S+FAV+DGH G R + + +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVVGIPHG-------LDNWSFFAVYDGHAGSRVANYCST 73
Query: 649 NLHQNLIRK--FPKGDVI------SVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGS 804
+L +++ F D SVE +VK + F DE + + + GS
Sbjct: 74 HLLEHITTNEDFRAADKSGSALEPSVE-SVKTGIRTGFLKIDEYMRNFSDLRNGMDRSGS 132
Query: 805 TATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGN 984
TA V+ +Y N GDSRA+LCR + +++H P E+ RIQ AGG+
Sbjct: 133 TAVGVMVSPTHMYFINCGDSRAVLCRNGQ------VCFSTQDHKPCNPVEKERIQNAGGS 186
Query: 985 VRDGRVLGVLEVSRSIGDGQYK 1050
V RV G L VSR++GD YK
Sbjct: 187 VMIQRVNGSLAVSRALGDYDYK 208
>ref|NP_035281.1| protein phosphatase 1B isoform 2 [Mus musculus].
Length = 390
Score = 87.0 bits (214), Expect = 2e-17
Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 8/202 (3%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + I + S+FAV+DGH G R + + +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVVGIPHG-------LDNWSFFAVYDGHAGSRVANYCST 73
Query: 649 NLHQNLIRK--FPKGDVI------SVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGS 804
+L +++ F D SVE +VK + F DE + + + GS
Sbjct: 74 HLLEHITTNEDFRAADKSGSALEPSVE-SVKTGIRTGFLKIDEYMRNFSDLRNGMDRSGS 132
Query: 805 TATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGN 984
TA V+ +Y N GDSRA+LCR + +++H P E+ RIQ AGG+
Sbjct: 133 TAVGVMVSPTHMYFINCGDSRAVLCRNGQ------VCFSTQDHKPCNPVEKERIQNAGGS 186
Query: 985 VRDGRVLGVLEVSRSIGDGQYK 1050
V RV G L VSR++GD YK
Sbjct: 187 VMIQRVNGSLAVSRALGDYDYK 208
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,082,786
Number of extensions: 708072
Number of successful extensions: 2853
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 2818
Number of HSP's successfully gapped: 20
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013319
(1118 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_110395.1| integrin-linked kinase-associated serine/threon... 553 e-158
Alignment gi|NP_055449.1| protein phosphatase 1F [Homo sapiens]. 94 2e-19
Alignment gi|NP_055721.3| protein phosphatase 1E [Homo sapiens]. 94 3e-19
Alignment gi|NP_808821.2| protein phosphatase 1A isoform 3 [Homo sapiens]. 92 7e-19
Alignment gi|NP_066283.1| protein phosphatase 1A isoform 1 [Homo sapiens]. 91 1e-18
Alignment gi|NP_808820.1| protein phosphatase 1A isoform 2 [Homo sapiens]. 91 1e-18
Alignment gi|NP_640338.2| protein phosphatase 1L [Homo sapiens]. 91 3e-18
Alignment gi|NP_689755.3| protein phosphatase 1K, mitochondrial [Homo sap... 90 3e-18
Alignment gi|NP_001073870.1| probable protein phosphatase 1N [Homo sapien... 89 6e-18
Alignment gi|NP_001028729.1| protein phosphatase 1B isoform 5 [Homo sapie... 84 3e-16
>ref|NP_110395.1| integrin-linked kinase-associated serine/threonine phosphatase 2C
[Homo sapiens].
Length = 392
Score = 553 bits (1426), Expect = e-158
Identities = 282/321 (87%), Positives = 282/321 (87%)
Frame = +1
Query: 154 MDLFGDLPEPERSPRPAAGKEAQKGSLLFDXXXXXXXXXXXXXXXXXFDDLPXXXXXXXX 333
MDLFGDLPEPERSPRPAAGKEAQKG LLFD FDDLP
Sbjct: 1 MDLFGDLPEPERSPRPAAGKEAQKGPLLFDDLPPASSTDSGSGGPLLFDDLPPASSGDSG 60
Query: 334 XXXXXXXQTGKNEGKGAKRKTSEEEKNGSEELVEKKVCKASSAIFGLKGYVAERKGEREE 513
Q K EGKGAKRKTSEEEKNGSEELVEKKVCKASS IFGLKGYVAERKGEREE
Sbjct: 61 SLATSISQMVKTEGKGAKRKTSEEEKNGSEELVEKKVCKASSVIFGLKGYVAERKGEREE 120
Query: 514 MQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDV 693
MQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDV
Sbjct: 121 MQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDV 180
Query: 694 ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRAI 873
ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDN LYIANLGDSRAI
Sbjct: 181 ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNILYIANLGDSRAI 240
Query: 874 LCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKR 1053
LCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKR
Sbjct: 241 LCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKR 300
Query: 1054 CGVTSVPDIRRCQLTPXDRFI 1116
CGVTSVPDIRRCQLTP DRFI
Sbjct: 301 CGVTSVPDIRRCQLTPNDRFI 321
>ref|NP_055449.1| protein phosphatase 1F [Homo sapiens].
Length = 454
Score = 94.4 bits (233), Expect = 2e-19
Identities = 64/184 (34%), Positives = 99/184 (53%), Gaps = 3/184 (1%)
Frame = +1
Query: 496 KGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRK 675
+ R +M+D HV L + S + R +YFAVFDGHGG+ A+++AA ++H N R+
Sbjct: 163 RNTRRKMEDRHVSLPSFNQ-LFGLSDPVNR-AYFAVFDGHGGVDAARYAAVHVHTNAARQ 220
Query: 676 FPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANL 855
+ + L + F+ TD+ FL++A ++ + G+T C L TL++A L
Sbjct: 221 ------PELPTDPEGALREAFRRTDQMFLRKAKRER--LQSGTTGVCALIAGATLHVAWL 272
Query: 856 GDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRD---GRVLGVLEVSR 1026
GDS+ IL Q+ + L + H P + +E+ RI+ GG V RV G L VSR
Sbjct: 273 GDSQVILV------QQGQVVKLMEPHRPERQDEKARIEALGGFVSHMDCWRVNGTLAVSR 326
Query: 1027 SIGD 1038
+IGD
Sbjct: 327 AIGD 330
>ref|NP_055721.3| protein phosphatase 1E [Homo sapiens].
Length = 755
Score = 93.6 bits (231), Expect = 3e-19
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 27/243 (11%)
Frame = +1
Query: 403 EEKNGSEELVEKKVCKASSAIFG---------LKGYVAER-------------KGEREEM 516
+E +G+E VE + K + ++F +K + R K R +M
Sbjct: 185 KETDGTEGTVEIETVKLARSVFSKLHEICCSWVKDFPLRRRPQLYYETSIHAIKNMRRKM 244
Query: 517 QDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRK--FPKGD 690
+D HV + D +YFAVFDGHGG+ A+ +A+ +LH NL+R+ FP
Sbjct: 245 EDKHVCIPDFNMLFNLEDQ--EEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQEMFPHDP 302
Query: 691 VISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSRA 870
L F+ TDE F+++A+ + + + G+T N L++A +GDS+
Sbjct: 303 A--------EALCRAFRVTDERFVQKAA--RESLRCGTTGVVTFIRGNMLHVAWVGDSQV 352
Query: 871 ILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNV---RDGRVLGVLEVSRSIGDG 1041
+L R K A+ L K H P + +E+ RI+ GG V RV G L VSR+IGD
Sbjct: 353 MLVR------KGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDA 406
Query: 1042 QYK 1050
++K
Sbjct: 407 EHK 409
>ref|NP_808821.2| protein phosphatase 1A isoform 3 [Homo sapiens].
Length = 455
Score = 92.4 bits (228), Expect = 7e-19
Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 15/244 (6%)
Frame = +1
Query: 364 KNEGKGAKRKTSEEEKNGSEELVEKKVC------------KASSAIFGLKGYVAERKGER 507
+NE +G + K E K +L ++ + A GL+ ++ +G R
Sbjct: 47 RNEKRGNQMKRMCERKKYETDLEDQDIMGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWR 106
Query: 508 EEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFP-K 684
EM+DAH + + PS L + S+FAV+DGH G + +K+ ++L ++ K
Sbjct: 107 VEMEDAHTAVIGL------PSGLESW-SFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFK 159
Query: 685 GDV--ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLG 858
G SVE VK + F DE + + A + GSTA VL Y N G
Sbjct: 160 GSAGAPSVEN-VKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCG 218
Query: 859 DSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGD 1038
DSR +LCR + +++H P+ E+ RIQ AGG+V RV G L VSR++GD
Sbjct: 219 DSRGLLCRNRKVH------FFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGD 272
Query: 1039 GQYK 1050
YK
Sbjct: 273 FDYK 276
>ref|NP_066283.1| protein phosphatase 1A isoform 1 [Homo sapiens].
Length = 382
Score = 91.3 bits (225), Expect = 1e-18
Identities = 69/197 (35%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + + PS L + S+FAV+DGH G + +K+ +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVIGL------PSGLESW-SFFAVYDGHAGSQVAKYCCE 73
Query: 649 NLHQNLIRKFP-KGDV--ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCV 819
+L ++ KG SVE VK + F DE + + A + GSTA V
Sbjct: 74 HLLDHITNNQDFKGSAGAPSVEN-VKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGV 132
Query: 820 LAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGR 999
L Y N GDSR +LCR + +++H P+ E+ RIQ AGG+V R
Sbjct: 133 LISPQHTYFINCGDSRGLLCRNRKVH------FFTQDHKPSNPLEKERIQNAGGSVMIQR 186
Query: 1000 VLGVLEVSRSIGDGQYK 1050
V G L VSR++GD YK
Sbjct: 187 VNGSLAVSRALGDFDYK 203
>ref|NP_808820.1| protein phosphatase 1A isoform 2 [Homo sapiens].
Length = 324
Score = 91.3 bits (225), Expect = 1e-18
Identities = 69/197 (35%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + + PS L + S+FAV+DGH G + +K+ +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVIGL------PSGLESW-SFFAVYDGHAGSQVAKYCCE 73
Query: 649 NLHQNLIRKFP-KGDV--ISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCV 819
+L ++ KG SVE VK + F DE + + A + GSTA V
Sbjct: 74 HLLDHITNNQDFKGSAGAPSVEN-VKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGV 132
Query: 820 LAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGR 999
L Y N GDSR +LCR + +++H P+ E+ RIQ AGG+V R
Sbjct: 133 LISPQHTYFINCGDSRGLLCRNRKVH------FFTQDHKPSNPLEKERIQNAGGSVMIQR 186
Query: 1000 VLGVLEVSRSIGDGQYK 1050
V G L VSR++GD YK
Sbjct: 187 VNGSLAVSRALGDFDYK 203
>ref|NP_640338.2| protein phosphatase 1L [Homo sapiens].
Length = 360
Score = 90.5 bits (223), Expect = 3e-18
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 11/205 (5%)
Frame = +1
Query: 496 KGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNL--- 666
+G R+ M+D +L D+ + P S F +FDGHGG A+++ L + L
Sbjct: 99 QGRRDHMEDRFEVLTDLANKTHP--------SIFGIFDGHGGETAAEYVKSRLPEALKQH 150
Query: 667 ---IRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAV--D 831
K + V+S + +++ +L D E L++ + D + TC++A+ D
Sbjct: 151 LQDYEKDKENSVLSYQTILEQQILSI----DREMLEKLTVSY----DEAGTTCLIALLSD 202
Query: 832 NTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRV 1002
L +AN+GDSR +LC + A+ LS +H P Q +ER RI++AGG + RV
Sbjct: 203 KDLTVANVGDSRGVLC-----DKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRV 257
Query: 1003 LGVLEVSRSIGDGQYKRCGVTSVPD 1077
G+L +SRS+GD K V +PD
Sbjct: 258 QGILAMSRSLGDYPLKNLNVV-IPD 281
>ref|NP_689755.3| protein phosphatase 1K, mitochondrial [Homo sapiens].
Length = 372
Score = 90.1 bits (222), Expect = 3e-18
Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 8/188 (4%)
Frame = +1
Query: 568 SSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDVISVEKTVKRCLLDTFKHT 747
+ L V YFAV+DGHGG A+ F ++ + ++ PK EK ++ L F
Sbjct: 114 AQLTDEVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPK------EKNLETLLTLAFLEI 167
Query: 748 DEEFLKQA--SSQKPAWKDGSTATCVLAVDN-TLYIANLGDSRAILCRYNEESQKHAALS 918
D+ F A S+ G+TAT L D L +A++GDSRAILCR K +
Sbjct: 168 DKAFSSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCR------KGKPMK 221
Query: 919 LSKEHNPTQYEERMRIQKAGG-----NVRDGRVLGVLEVSRSIGDGQYKRCGVTSVPDIR 1083
L+ +H P + +E+ RI+K GG ++ V G L ++RSIGD K GV + P+ +
Sbjct: 222 LTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETK 281
Query: 1084 RCQLTPXD 1107
R +L D
Sbjct: 282 RIKLHHAD 289
>ref|NP_001073870.1| probable protein phosphatase 1N [Homo sapiens].
Length = 430
Score = 89.4 bits (220), Expect = 6e-18
Identities = 76/241 (31%), Positives = 108/241 (44%), Gaps = 21/241 (8%)
Frame = +1
Query: 391 KTSEEEKNGSEELVEKKVCK---------------------ASSAIFGLKGYVAERKGER 507
K E EK G EE E++ + + A GL+ + +G R
Sbjct: 17 KKKEREKEGREEEEEEEAGRRAPEGPRSLLTAPRRAQRPHGGAEASGGLRFGASAAQGWR 76
Query: 508 EEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKG 687
M+DAH + PP + FAV DGHGG RA++F A++L +++++ G
Sbjct: 77 ARMEDAHCTWLSLPG--LPPGWAL-----FAVLDGHGGARAARFGARHLPGHVLQEL--G 127
Query: 688 DVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNTLYIANLGDSR 867
S + V+ L F DE S G TA +L LY+A+ GDSR
Sbjct: 128 PEPSEPEGVREALRRAFLSADERL---RSLWPRVETGGCTAVVLLVSPRFLYLAHCGDSR 184
Query: 868 AILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQY 1047
A+L R A +++H P + ER RI AGG +R RV G L VSR++GD Y
Sbjct: 185 AVLSRAG------AVAFSTEDHRPLRPRERERIHAAGGTIRRRRVEGSLAVSRALGDFTY 238
Query: 1048 K 1050
K
Sbjct: 239 K 239
>ref|NP_001028729.1| protein phosphatase 1B isoform 5 [Homo sapiens].
Length = 380
Score = 83.6 bits (205), Expect = 3e-16
Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Frame = +1
Query: 469 GLKGYVAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQ 648
GL+ ++ +G R EM+DAH + I + S+FAV+DGH G R + + +
Sbjct: 21 GLRYGLSSMQGWRVEMEDAHTAVVGIPHG-------LEDWSFFAVYDGHAGSRVANYCST 73
Query: 649 NLHQNLIR--------KFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGS 804
+L +++ K +SVE VK + F DE + + + GS
Sbjct: 74 HLLEHITTNEDFRAAGKSGSALELSVEN-VKNGIRTGFLKIDEYMRNFSDLRNGMDRSGS 132
Query: 805 TATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGN 984
TA V+ +Y N GDSRA+L R + +++H P E+ RIQ AGG+
Sbjct: 133 TAVGVMISPKHIYFINCGDSRAVLYRNGQ------VCFSTQDHKPCNPREKERIQNAGGS 186
Query: 985 VRDGRVLGVLEVSRSIGDGQYK 1050
V RV G L VSR++GD YK
Sbjct: 187 VMIQRVNGSLAVSRALGDYDYK 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,474,423
Number of extensions: 832290
Number of successful extensions: 3478
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3436
Number of HSP's successfully gapped: 22
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013319
(1118 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 256 2e-65
>Sscrofa_Chr15
|| Length = 157681621
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 450 agcctcttcggcgatctttggtttgaaaggctacgtggctgagcggaagggcgagcggga 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152147839 agcctcttcggcgatctttggtttgaaaggctacgtggctgagcggaagggcgagcggga 152147898
Query: 510 ggagatgcaggacgcgcacgtcatcctcaacgacatcaccgaggagtgccggccgccctc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152147899 ggagatgcaggacgcgcacgtcatcctcaacgacatcaccgaggagtgccggccgccctc 152147958
Query: 570 ctccctcat 578
|||||||||
Sbjct: 152147959 ctccctcat 152147967
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 450 agcctcttcggcgatctttggtttgaaaggctacgtggctgagcggaagggcgagcggga 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152234159 agcctcttcggcgatctttggtttgaaaggctacgtggctgagcggaagggcgagcggga 152234218
Query: 510 ggagatgcaggacgcgcacgtcatcctcaacgacatcaccgaggagtgccggccgccctc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152234219 ggagatgcaggacgcgcacgtcatcctcaacgacatcaccgaggagtgccggccgccctc 152234278
Query: 570 ctccctcat 578
|||||||||
Sbjct: 152234279 ctccctcat 152234287
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 867 ggcaatcctgtgtcgttacaacgaggagagtcaaaaacatgcagccttaagcctcagcaa 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152152221 ggcaatcctgtgtcgttacaacgaggagagtcaaaaacatgcagccttaagcctcagcaa 152152280
Query: 927 ggagcataatccaacccagtatgaggaacgcatgagaatacaaaaggctggcgggaatgt 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152152281 ggagcataatccaacccagtatgaggaacgcatgagaatacaaaaggctggcgggaatgt 152152340
Query: 987 cagg 990
||||
Sbjct: 152152341 cagg 152152344
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 867 ggcaatcctgtgtcgttacaacgaggagagtcaaaaacatgcagccttaagcctcagcaa 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152238541 ggcaatcctgtgtcgttacaacgaggagagtcaaaaacatgcagccttaagcctcagcaa 152238600
Query: 927 ggagcataatccaacccagtatgaggaacgcatgagaatacaaaaggctggcgggaatgt 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152238601 ggagcataatccaacccagtatgaggaacgcatgagaatacaaaaggctggcgggaatgt 152238660
Query: 987 cagg 990
||||
Sbjct: 152238661 cagg 152238664
Score = 236 bits (119), Expect = 2e-59
Identities = 124/126 (98%)
Strand = Plus / Plus
Query: 986 tcagggacgggcgcgtcctgggcgtgctggaggtgtcccgctccatcggggacgggcagt 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152159113 tcagggacgggcgcgtcctgggcgtgctggaggtgtcccgctccatcggggacgggcagt 152159172
Query: 1046 acaagcgctgcggggtgacgtctgtgcccgacatcagacgctgccagctgacccccnacg 1105
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 152159173 acaagcgctgcggggtgacgtctgtgccggacatcagacgctgccagctgacccccaacg 152159232
Query: 1106 acaggt 1111
||||||
Sbjct: 152159233 acaggt 152159238
Score = 236 bits (119), Expect = 2e-59
Identities = 124/126 (98%)
Strand = Plus / Plus
Query: 986 tcagggacgggcgcgtcctgggcgtgctggaggtgtcccgctccatcggggacgggcagt 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152245433 tcagggacgggcgcgtcctgggcgtgctggaggtgtcccgctccatcggggacgggcagt 152245492
Query: 1046 acaagcgctgcggggtgacgtctgtgcccgacatcagacgctgccagctgacccccnacg 1105
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 152245493 acaagcgctgcggggtgacgtctgtgccggacatcagacgctgccagctgacccccaacg 152245552
Query: 1106 acaggt 1111
||||||
Sbjct: 152245553 acaggt 152245558
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 579 tacccgggtttcatattttgctgtttttgatggacatggaggaattcgtgcctcaaaatt 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152149935 tacccgggtttcatattttgctgtttttgatggacatggaggaattcgtgcctcaaaatt 152149994
Query: 639 tgctgcacagaatttgcatcagaacttgatcaggaaatttcctaaagg 686
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152149995 tgctgcacagaatttgcatcagaacttgatcaggaaatttcctaaagg 152150042
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 579 tacccgggtttcatattttgctgtttttgatggacatggaggaattcgtgcctcaaaatt 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152236255 tacccgggtttcatattttgctgtttttgatggacatggaggaattcgtgcctcaaaatt 152236314
Query: 639 tgctgcacagaatttgcatcagaacttgatcaggaaatttcctaaagg 686
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152236315 tgctgcacagaatttgcatcagaacttgatcaggaaatttcctaaagg 152236362
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 684 aggagacgtcatcagtgtagagaaaaccgtgaaaagatgccttctggacactttcaagca 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152150474 aggagacgtcatcagtgtagagaaaaccgtgaaaagatgccttctggacactttcaagca 152150533
Query: 744 cacggacgaagagttcctcaagcaggcttccagccag 780
|||||||||||||||||||||||||||||||||||||
Sbjct: 152150534 cacggacgaagagttcctcaagcaggcttccagccag 152150570
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 684 aggagacgtcatcagtgtagagaaaaccgtgaaaagatgccttctggacactttcaagca 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152236794 aggagacgtcatcagtgtagagaaaaccgtgaaaagatgccttctggacactttcaagca 152236853
Query: 744 cacggacgaagagttcctcaagcaggcttccagccag 780
|||||||||||||||||||||||||||||||||||||
Sbjct: 152236854 cacggacgaagagttcctcaagcaggcttccagccag 152236890
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 780 gaagcctgcctggaaagatgggtccaccgccacgtgcgttctggctgtagacaacaccct 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152150821 gaagcctgcctggaaagatgggtccaccgccacgtgcgttctggctgtagacaacaccct 152150880
Query: 840 ttacatcgccaacctcggagacagtcggg 868
|||||||||||||||||||||||||||||
Sbjct: 152150881 ttacatcgccaacctcggagacagtcggg 152150909
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 780 gaagcctgcctggaaagatgggtccaccgccacgtgcgttctggctgtagacaacaccct 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152237141 gaagcctgcctggaaagatgggtccaccgccacgtgcgttctggctgtagacaacaccct 152237200
Query: 840 ttacatcgccaacctcggagacagtcggg 868
|||||||||||||||||||||||||||||
Sbjct: 152237201 ttacatcgccaacctcggagacagtcggg 152237229
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 208 gggaaagaagctcagaaaggatctctgctctttgacggcctccctccagccagcagtgct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152229021 gggaaagaagctcagaaaggatctctgctctttgacggcctccctccagccagcagtgct 152229080
Query: 268 gactcagg 275
||||||||
Sbjct: 152229081 gactcagg 152229088
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 271 tcaggatcagggggacctttgctttttgatgatctcccaccagccagcagtggcgatgca 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152229556 tcaggatcagggggacctttgctttttgatgatctcccaccagccagcagtggcgatgca 152229615
Query: 331 ggt 333
|||
Sbjct: 152229616 ggt 152229618
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 154 atggacctgttcggggacctgccggagcccgagcgctcgccgcgccctgctgccgg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152222114 atggacctgttcggggacctgccggagcccgagcgctcgccgcgccctgctgccgg 152222169
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,454,821
Number of extensions: 140
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 15
Length of query: 1118
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1097
Effective length of database: 2,808,413,156
Effective search space: 3080829232132
Effective search space used: 3080829232132
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)