Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013321
(1111 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851900.1| PREDICTED: similar to mRNA decapping enzyme [Ca... 560 e-160
>ref|XP_851900.1| PREDICTED: similar to mRNA decapping enzyme [Canis familiaris].
Length = 362
Score = 560 bits (1443), Expect = e-160
Identities = 285/342 (83%), Positives = 300/342 (87%)
Frame = +2
Query: 5 LSPGNMADTAPQPSKRKRERDPXXXXXXXXXXXXXRVGNGTSAPVRLPFSGFRVKKVLRE 184
L PG+MAD APQP KRKRE+D VGNGTSAPV+LPFSGFRV+KVLRE
Sbjct: 24 LRPGSMADLAPQPGKRKREQDAEEAATDQEQAG---VGNGTSAPVQLPFSGFRVEKVLRE 80
Query: 185 SARDKIIFLHGKVNEASGDGDGEDAIVILEKTPFQVDQVAQLLMGSPELQLQFSNDIYST 364
SARDKI+FLHGKVNEASGDG GEDAIVILEKTPFQV+QVAQLLMG PELQLQFSNDIYST
Sbjct: 81 SARDKILFLHGKVNEASGDGGGEDAIVILEKTPFQVEQVAQLLMGRPELQLQFSNDIYST 140
Query: 365 YHLFPPRQLSDVKTTVVYPATEKHLQKYLHQDLHLVRETGGDYKNITLPHLESQSLSIQW 544
YHLFPPRQLSDVK TVVYPATEKHLQKYL QDL LV+ETG DYKNITLP+LESQSLSIQW
Sbjct: 141 YHLFPPRQLSDVKATVVYPATEKHLQKYLRQDLRLVQETGSDYKNITLPYLESQSLSIQW 200
Query: 545 VYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQKQLDDLYLIAICHRRGIKSLRDLTP 724
VYNILDKKAE DR+VFENPDPSDGFVLIPDLKWNQ+QLDDLYLIAICHRRGI+SLRDLTP
Sbjct: 201 VYNILDKKAETDRMVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTP 260
Query: 725 EHLPLLRNILREGQEAILQRYQVTGDRLRVXXXXXXXXXXXXXXFTALGFEAPGAGVERA 904
EHLPLLRNILREGQEAILQRYQV GDRLRV FTALGF+APG+GVERA
Sbjct: 261 EHLPLLRNILREGQEAILQRYQVRGDRLRVYLHYLPSYYHLHVHFTALGFDAPGSGVERA 320
Query: 905 HLLAEVIENLEQDPEHYQRRTLTFALRADDPLLTLLQEAQRS 1030
HLLA+VIENLE DPEHYQRRTLTFALRADDPLL LLQEAQ+S
Sbjct: 321 HLLADVIENLECDPEHYQRRTLTFALRADDPLLRLLQEAQKS 362
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,687,320
Number of extensions: 1058347
Number of successful extensions: 3983
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3966
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 266
Effective length of database: 15,407,560
Effective search space: 4098410960
Effective search space used: 4098410960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013321
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013321
(1111 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777120.2| scavenger mRNA-decapping enzyme DcpS [Bos tauru... 565 e-161
>ref|NP_777120.2| scavenger mRNA-decapping enzyme DcpS [Bos taurus].
Length = 337
Score = 565 bits (1456), Expect = e-161
Identities = 287/337 (85%), Positives = 297/337 (88%)
Frame = +2
Query: 20 MADTAPQPSKRKRERDPXXXXXXXXXXXXXRVGNGTSAPVRLPFSGFRVKKVLRESARDK 199
MA+ A Q SKRKRE D VGNGTSAPVRLPFSGFRVKKVLRESARDK
Sbjct: 1 MAELAHQQSKRKRELDAEEAEASSTEGEEAGVGNGTSAPVRLPFSGFRVKKVLRESARDK 60
Query: 200 IIFLHGKVNEASGDGDGEDAIVILEKTPFQVDQVAQLLMGSPELQLQFSNDIYSTYHLFP 379
IIFLHGKVNEASGDGDGEDA+VILEKTPFQVDQVAQLL GSPELQLQFSND+YSTYHLFP
Sbjct: 61 IIFLHGKVNEASGDGDGEDAVVILEKTPFQVDQVAQLLKGSPELQLQFSNDVYSTYHLFP 120
Query: 380 PRQLSDVKTTVVYPATEKHLQKYLHQDLHLVRETGGDYKNITLPHLESQSLSIQWVYNIL 559
PRQLSDVKTTVVYPATEKHLQKYL QDLHLVRETG DY+N+TLPHLESQSLSIQWVYNIL
Sbjct: 121 PRQLSDVKTTVVYPATEKHLQKYLRQDLHLVRETGSDYRNVTLPHLESQSLSIQWVYNIL 180
Query: 560 DKKAEADRIVFENPDPSDGFVLIPDLKWNQKQLDDLYLIAICHRRGIKSLRDLTPEHLPL 739
DKKAEADRIVFENPDPSDGFVLIPDLKWNQ+QLDDLYLIAICHRRGIKSLRDLT EHLPL
Sbjct: 181 DKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIKSLRDLTAEHLPL 240
Query: 740 LRNILREGQEAILQRYQVTGDRLRVXXXXXXXXXXXXXXFTALGFEAPGAGVERAHLLAE 919
LRNILREGQEAIL+RY+V DRLRV FTALGFEAPGAGVERAHLLAE
Sbjct: 241 LRNILREGQEAILRRYRVAADRLRVYLHYLPSYYHLHVHFTALGFEAPGAGVERAHLLAE 300
Query: 920 VIENLEQDPEHYQRRTLTFALRADDPLLTLLQEAQRS 1030
VI+NLEQDPEHY+RRTLTFALRADDPLL LLQEAQRS
Sbjct: 301 VIDNLEQDPEHYRRRTLTFALRADDPLLALLQEAQRS 337
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,873,561
Number of extensions: 1019471
Number of successful extensions: 3848
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3820
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,240,222
Effective search space: 3787899052
Effective search space used: 3787899052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013321
(1111 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998955.1| scavenger mRNA-decapping enzyme DcpS [Sus scrof... 610 e-175
>ref|NP_998955.1| scavenger mRNA-decapping enzyme DcpS [Sus scrofa].
Length = 337
Score = 610 bits (1574), Expect = e-175
Identities = 310/337 (91%), Positives = 310/337 (91%)
Frame = +2
Query: 20 MADTAPQPSKRKRERDPXXXXXXXXXXXXXRVGNGTSAPVRLPFSGFRVKKVLRESARDK 199
MADTAPQPSKRKRERDP RVGNGTSAPVRLPFSGFRVKKVLRESARDK
Sbjct: 1 MADTAPQPSKRKRERDPEEAEAPSTEEKEARVGNGTSAPVRLPFSGFRVKKVLRESARDK 60
Query: 200 IIFLHGKVNEASGDGDGEDAIVILEKTPFQVDQVAQLLMGSPELQLQFSNDIYSTYHLFP 379
IIFLHGKVNEASGDGDGEDAIVILEKTPFQVDQVAQLLMGSPELQLQFSNDIYSTYHLFP
Sbjct: 61 IIFLHGKVNEASGDGDGEDAIVILEKTPFQVDQVAQLLMGSPELQLQFSNDIYSTYHLFP 120
Query: 380 PRQLSDVKTTVVYPATEKHLQKYLHQDLHLVRETGGDYKNITLPHLESQSLSIQWVYNIL 559
PRQLSDVKTTVVYPATEKHLQKYLHQDLHLVRETGGDYKNITLPHLESQSLSIQWVYNIL
Sbjct: 121 PRQLSDVKTTVVYPATEKHLQKYLHQDLHLVRETGGDYKNITLPHLESQSLSIQWVYNIL 180
Query: 560 DKKAEADRIVFENPDPSDGFVLIPDLKWNQKQLDDLYLIAICHRRGIKSLRDLTPEHLPL 739
DKKAEADRIVFENPDPSDGFVLIPDLKWNQKQLDDLYLIAICHRRGIKSLRDLTPEHLPL
Sbjct: 181 DKKAEADRIVFENPDPSDGFVLIPDLKWNQKQLDDLYLIAICHRRGIKSLRDLTPEHLPL 240
Query: 740 LRNILREGQEAILQRYQVTGDRLRVXXXXXXXXXXXXXXFTALGFEAPGAGVERAHLLAE 919
LRNILREGQEAILQRYQVTGDRLRV FTALGFEAPGAGVERAHLLAE
Sbjct: 241 LRNILREGQEAILQRYQVTGDRLRVYLHYLPSYYHLHVHFTALGFEAPGAGVERAHLLAE 300
Query: 920 VIENLEQDPEHYQRRTLTFALRADDPLLTLLQEAQRS 1030
VIENLEQDPEHYQRRTLTFALRADDPLLTLLQEAQRS
Sbjct: 301 VIENLEQDPEHYQRRTLTFALRADDPLLTLLQEAQRS 337
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,120,218
Number of extensions: 658270
Number of successful extensions: 2578
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2572
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,854,232
Effective search space: 2390642640
Effective search space used: 2390642640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013321
(1111 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081306.1| scavenger mRNA-decapping enzyme DcpS [Mus muscu... 533 e-151
>ref|NP_081306.1| scavenger mRNA-decapping enzyme DcpS [Mus musculus].
Length = 338
Score = 533 bits (1372), Expect = e-151
Identities = 271/336 (80%), Positives = 292/336 (86%)
Frame = +2
Query: 20 MADTAPQPSKRKRERDPXXXXXXXXXXXXXRVGNGTSAPVRLPFSGFRVKKVLRESARDK 199
MADTAPQ KRKRE++ VGNGTSAPVRLPFSGFRV+KVLRESARDK
Sbjct: 1 MADTAPQ-LKRKREQEAEEAETPSTEEKEAGVGNGTSAPVRLPFSGFRVQKVLRESARDK 59
Query: 200 IIFLHGKVNEASGDGDGEDAIVILEKTPFQVDQVAQLLMGSPELQLQFSNDIYSTYHLFP 379
IIFLHGKVNE SGD GEDA+VILEKTPFQV+ VAQLL GSPEL+LQFSNDIYSTY+LFP
Sbjct: 60 IIFLHGKVNEDSGDTHGEDAVVILEKTPFQVEHVAQLLTGSPELKLQFSNDIYSTYNLFP 119
Query: 380 PRQLSDVKTTVVYPATEKHLQKYLHQDLHLVRETGGDYKNITLPHLESQSLSIQWVYNIL 559
PR LSD+KTTVVYPATEKHLQKY+ QDL L+RETG DY+ ITLP+LESQSLSIQWVYNIL
Sbjct: 120 PRHLSDIKTTVVYPATEKHLQKYMRQDLRLIRETGDDYRTITLPYLESQSLSIQWVYNIL 179
Query: 560 DKKAEADRIVFENPDPSDGFVLIPDLKWNQKQLDDLYLIAICHRRGIKSLRDLTPEHLPL 739
DKKAEADRIVFENPDPSDGFVLIPDLKWNQ+QLDDLYLIAICHRRGI+SLRDLTPEHLPL
Sbjct: 180 DKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPL 239
Query: 740 LRNILREGQEAILQRYQVTGDRLRVXXXXXXXXXXXXXXFTALGFEAPGAGVERAHLLAE 919
LRNILREGQEAIL+RYQVTGDRLRV FTALGFEAPG+GVERAHLLA+
Sbjct: 240 LRNILREGQEAILKRYQVTGDRLRVYLHYLPSYYHLHVHFTALGFEAPGSGVERAHLLAQ 299
Query: 920 VIENLEQDPEHYQRRTLTFALRADDPLLTLLQEAQR 1027
VIENLE DP+HYQ+RTLTFALR DDPLL LLQ+AQ+
Sbjct: 300 VIENLECDPKHYQQRTLTFALRTDDPLLQLLQKAQQ 335
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,588,935
Number of extensions: 853995
Number of successful extensions: 3242
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3195
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 267
Effective length of database: 12,523,851
Effective search space: 3343868217
Effective search space used: 3343868217
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013321
(1111 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_054745.1| scavenger mRNA-decapping enzyme DcpS [Homo sapi... 550 e-156
>ref|NP_054745.1| scavenger mRNA-decapping enzyme DcpS [Homo sapiens].
Length = 337
Score = 550 bits (1416), Expect = e-156
Identities = 278/337 (82%), Positives = 293/337 (86%)
Frame = +2
Query: 20 MADTAPQPSKRKRERDPXXXXXXXXXXXXXRVGNGTSAPVRLPFSGFRVKKVLRESARDK 199
MAD APQ KRKRE D VGNGT APVRLPFSGFR++KVLRESARDK
Sbjct: 1 MADAAPQLGKRKRELDVEEAHAASTEEKEAGVGNGTCAPVRLPFSGFRLQKVLRESARDK 60
Query: 200 IIFLHGKVNEASGDGDGEDAIVILEKTPFQVDQVAQLLMGSPELQLQFSNDIYSTYHLFP 379
IIFLHGKVNEASGDGDGEDA+VILEKTPFQV+QVAQLL GSPELQLQFSNDIYSTYHLFP
Sbjct: 61 IIFLHGKVNEASGDGDGEDAVVILEKTPFQVEQVAQLLTGSPELQLQFSNDIYSTYHLFP 120
Query: 380 PRQLSDVKTTVVYPATEKHLQKYLHQDLHLVRETGGDYKNITLPHLESQSLSIQWVYNIL 559
PRQL+DVKTTVVYPATEKHLQKYL QDL L+RETG DY+NITLPHLESQSLSIQWVYNIL
Sbjct: 121 PRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPHLESQSLSIQWVYNIL 180
Query: 560 DKKAEADRIVFENPDPSDGFVLIPDLKWNQKQLDDLYLIAICHRRGIKSLRDLTPEHLPL 739
DKKAEADRIVFENPDPSDGFVLIPDLKWNQ+QLDDLYLIAICHRRGI+SLRDLTPEHLPL
Sbjct: 181 DKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPL 240
Query: 740 LRNILREGQEAILQRYQVTGDRLRVXXXXXXXXXXXXXXFTALGFEAPGAGVERAHLLAE 919
LRNIL +GQEAILQRY++ GD LRV FTALGFEAPG+GVERAHLLAE
Sbjct: 241 LRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFEAPGSGVERAHLLAE 300
Query: 920 VIENLEQDPEHYQRRTLTFALRADDPLLTLLQEAQRS 1030
VIENLE DP HYQ+RTLTFALRADDPLL LLQEAQ+S
Sbjct: 301 VIENLECDPRHYQQRTLTFALRADDPLLKLLQEAQQS 337
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,856,123
Number of extensions: 1032593
Number of successful extensions: 3884
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3862
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,868,908
Effective search space: 3955129528
Effective search space used: 3955129528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013321
(1111 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 682 0.0
Sscrofa_Chr16 82 7e-13
>Sscrofa_Chr09
|| Length = 153670197
Score = 682 bits (344), Expect = 0.0
Identities = 347/348 (99%)
Strand = Plus / Plus
Query: 764 caggaagctatcctgcagcgctaccaggtaacaggagaccgcctccgtgtgtacctgcac 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59100093 caggaagctatcctgcagcgctaccaggtaacaggagaccgcctccgtgtgtacctgcac 59100152
Query: 824 tacctgccctcctactaccacctgcacgtgcacttcactgccctgggcttcgaggcccct 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59100153 tacctgccctcctactaccacctgcacgtgcacttcactgccctgggcttcgaggcccct 59100212
Query: 884 ggagcgggcgtggagcgggcccacctgctggcggaggtgatcgagaacctggagcaagac 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59100213 ggagcgggcgtggagcgggcccacctgctggcggaggtgatcgagaacctggagcaagac 59100272
Query: 944 ccggagcactaccagcggcgcaccctcacctttgccctcagggctgacgacccgctgctc 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59100273 ccggagcactaccagcggcgcaccctcacctttgccctcagggctgacgacccgctgctc 59100332
Query: 1004 actctcttgcaggaggcgcagcggagctgagtgtccacacccccttcccccgctgtcggg 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59100333 actctcttgcaggaggcgcagcggagctgagtgtccacacccccttcccccgctgtcggg 59100392
Query: 1064 ggaggaacactgatgcaggcggtgggggtggcaggatttttagaacca 1111
|||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 59100393 ggaggaacactgatgcaggcggtgggagtggcaggatttttagaacca 59100440
Score = 438 bits (221), Expect = e-120
Identities = 221/221 (100%)
Strand = Plus / Plus
Query: 2 acactctcccccggcaatatggcggacaccgctcctcaacccagcaagagaaagcgcgaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064184 acactctcccccggcaatatggcggacaccgctcctcaacccagcaagagaaagcgcgaa 59064243
Query: 62 cgagacccggaggaggcggaggcacccagcacagaggagaaggaagcaagggttgggaat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064244 cgagacccggaggaggcggaggcacccagcacagaggagaaggaagcaagggttgggaat 59064303
Query: 122 ggtacctctgctcctgtccgcttacctttctccggctttagagtgaaaaaagtgctaagg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064304 ggtacctctgctcctgtccgcttacctttctccggctttagagtgaaaaaagtgctaagg 59064363
Query: 182 gagtctgcgcgggacaaaatcattttcctgcacggaaaggt 222
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064364 gagtctgcgcgggacaaaatcattttcctgcacggaaaggt 59064404
Score = 351 bits (177), Expect = 5e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 219 aggtgaatgaggcttctggggatggagatggagaagatgccattgtgatcctggagaaga 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59066189 aggtgaatgaggcttctggggatggagatggagaagatgccattgtgatcctggagaaga 59066248
Query: 279 cgccatttcaggtggaccaggtggcccagctcctgatgggcagccctgaactccagctgc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59066249 cgccatttcaggtggaccaggtggcccagctcctgatgggcagccctgaactccagctgc 59066308
Query: 339 agttctccaatgatatctacagcacctatcacctcttccctccaaggcagctgagtg 395
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59066309 agttctccaatgatatctacagcacctatcacctcttccctccaaggcagctgagtg 59066365
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 395 gatgtgaagaccacggtggtttacccagccacagagaagcacctgcaaaagtacctgcac 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59087954 gatgtgaagaccacggtggtttacccagccacagagaagcacctgcaaaagtacctgcac 59088013
Query: 455 caggacctccacctggtccgagagactggaggcgattacaagaacatcaccttaccccat 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59088014 caggacctccacctggtccgagagactggaggcgattacaagaacatcaccttaccccat 59088073
Query: 515 ctggagtcccagagcctcagcatccag 541
|||||||||||||||||||||||||||
Sbjct: 59088074 ctggagtcccagagcctcagcatccag 59088100
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 537 tccagtgggtgtataatatcctcgacaagaaggctgaagctgaccggatcgtttttgaga 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59093606 tccagtgggtgtataatatcctcgacaagaaggctgaagctgaccggatcgtttttgaga 59093665
Query: 597 acccagatccctctgacggctttgtcctcatccccgacctcaagtggaaccaaaagcag 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59093666 acccagatccctctgacggctttgtcctcatccccgacctcaagtggaaccaaaagcag 59093724
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 653 cagctcgatgacctatacctgatcgccatctgccatcgccggggcatcaagtcgcttcgg 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59098129 cagctcgatgacctatacctgatcgccatctgccatcgccggggcatcaagtcgcttcgg 59098188
Query: 713 gaccttactccagagcacctgccactgctcaggaacatcctccgcgaggggcagg 767
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59098189 gaccttactccagagcacctgccactgctcaggaacatcctccgcgaggggcagg 59098243
>Sscrofa_Chr16
|| Length = 86898991
Score = 81.8 bits (41), Expect = 7e-13
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 264 tgatcctggagaagacgccatttcaggtggaccaggtggcccagctcctgatgggcagcc 323
||||||||||| ||| ||||||||||||||| || | |||||| |||||||||||||||
Sbjct: 56106114 tgatcctggagcagatgccatttcaggtggaacaaggtgcccag-tcctgatgggcagcc 56106056
Query: 324 ctgaactccagctgcagttctccaa 348
| ||||||||| || ||||||||||
Sbjct: 56106055 ccgaactccaggtgtagttctccaa 56106031
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,653,525
Number of extensions: 206
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 7
Length of query: 1111
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1090
Effective length of database: 2,808,413,156
Effective search space: 3061170340040
Effective search space used: 3061170340040
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)