Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013324
(1026 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068864.1| E3 SUMO-protein ligase PIAS1 [Bos taurus]. 585 e-168
Alignment gi|NP_001095655.1| E3 SUMO-protein ligase PIAS3 [Bos taurus]. 379 e-106
Alignment gi|XP_002697860.1| PREDICTED: E3 SUMO-protein ligase PIAS2-like... 249 1e-67
Alignment gi|XP_612798.5| PREDICTED: E3 SUMO-protein ligase PIAS2-like is... 249 1e-67
Alignment gi|NP_001076951.1| E3 SUMO-protein ligase PIAS4 [Bos taurus]. 242 3e-64
>ref|NP_001068864.1| E3 SUMO-protein ligase PIAS1 [Bos taurus].
Length = 651
Score = 585 bits (1508), Expect(2) = e-168
Identities = 295/313 (94%), Positives = 296/313 (94%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL
Sbjct: 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHEL 373
YRRRFPQKIMTPADLSIP+VHSSPMPATLSPSTIPQLTYDGH KHEL
Sbjct: 61 YRRRFPQKIMTPADLSIPNVHSSPMPATLSPSTIPQLTYDGHPASSPLLPVSLLGPKHEL 120
Query: 374 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 553
ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ
Sbjct: 121 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 180
Query: 554 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG 733
ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG
Sbjct: 181 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG 240
Query: 734 VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAK 913
VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL RLRAK
Sbjct: 241 VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLLQRLRAK 300
Query: 914 GIRNPGSSRALIK 952
GIRNP SRALIK
Sbjct: 301 GIRNPDHSRALIK 313
Score = 26.2 bits (56), Expect(2) = e-168
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA 995
DH ++E +TADPDSEIA T+
Sbjct: 306 DHSRALIKEKLTADPDSEIATTS 328
>ref|NP_001095655.1| E3 SUMO-protein ligase PIAS3 [Bos taurus].
Length = 628
Score = 379 bits (974), Expect(2) = e-106
Identities = 205/328 (62%), Positives = 242/328 (73%), Gaps = 15/328 (4%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MA+ ELK MVMS RVSELQVLLG+AGRNK GRKHELL KALHLLK+ C+P+VQMKIKEL
Sbjct: 1 MAELGELKHMVMSFRVSELQVLLGFAGRNKSGRKHELLAKALHLLKSSCAPSVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSI-------PSVHS----SPMP-ATLSPSTI--PQLTYDGHXXXX 331
YRRRFP+K + P+DLS+ P V S +P+P A L+P T+ P+ D H
Sbjct: 61 YRRRFPRKTLGPSDLSLLSLPPGTPPVGSPGPLAPIPPALLAPGTLLGPKREVDMHPP-- 118
Query: 332 XXXXXXXXXXKHELELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRE 511
LP PVHPD+ ++ LPFY++ ELI+PT+LAS +SQRF E
Sbjct: 119 ---------------LPQ------PVHPDVTMKPLPFYEIYGELIRPTTLASTSSQRFEE 157
Query: 512 TCFAFALTPQQVQQISSSMDI-SGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNT 688
F FALTPQQVQQI +S ++ G KCD+T+QVQLRFCL ETSCPQED+FPPNL VKVN
Sbjct: 158 AHFTFALTPQQVQQILTSREVLPGAKCDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNG 217
Query: 689 KPCSLPGYLPPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLV 868
K C LPGYLPPTKNG EPKRPSRPINIT L RLS TVPNTIVV+W++E GRNYS++VYLV
Sbjct: 218 KLCPLPGYLPPTKNGAEPKRPSRPINITPLARLSATVPNTIVVNWSSEFGRNYSLSVYLV 277
Query: 869 KQLSSTVLL*RLRAKGIRNPGSSRALIK 952
+QL++ LL +LRAKGIRNP SRALIK
Sbjct: 278 RQLTAGTLLQKLRAKGIRNPDHSRALIK 305
Score = 26.2 bits (56), Expect(2) = e-106
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSE+A T+ S M
Sbjct: 298 DHSRALIKEKLTADPDSEVATTSLRVSLM 326
>ref|XP_002697860.1| PREDICTED: E3 SUMO-protein ligase PIAS2-like [Bos taurus].
Length = 339
Score = 249 bits (636), Expect(2) = 1e-67
Identities = 122/184 (66%), Positives = 149/184 (80%), Gaps = 1/184 (0%)
Frame = +2
Query: 404 PVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMD-ISG 580
PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F FALTPQQV++I S D + G
Sbjct: 10 PVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPG 69
Query: 581 TKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRP 760
+ D+TVQVQLR CL+ETSCPQED++P +LC+KVN K LPGY PP KNG+E KRP RP
Sbjct: 70 GRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRP 129
Query: 761 INITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAKGIRNPGSSR 940
+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+S +LL RL+ KGIRNP SR
Sbjct: 130 LNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSR 189
Query: 941 ALIK 952
ALIK
Sbjct: 190 ALIK 193
Score = 26.6 bits (57), Expect(2) = 1e-67
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 186 DHSRALIKEKLTADPDSEIATTSLRVSLM 214
>ref|XP_612798.5| PREDICTED: E3 SUMO-protein ligase PIAS2-like isoform 1 [Bos
taurus].
Length = 339
Score = 249 bits (636), Expect(2) = 1e-67
Identities = 122/184 (66%), Positives = 149/184 (80%), Gaps = 1/184 (0%)
Frame = +2
Query: 404 PVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMD-ISG 580
PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F FALTPQQV++I S D + G
Sbjct: 10 PVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPG 69
Query: 581 TKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRP 760
+ D+TVQVQLR CL+ETSCPQED++P +LC+KVN K LPGY PP KNG+E KRP RP
Sbjct: 70 GRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRP 129
Query: 761 INITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAKGIRNPGSSR 940
+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+S +LL RL+ KGIRNP SR
Sbjct: 130 LNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSR 189
Query: 941 ALIK 952
ALIK
Sbjct: 190 ALIK 193
Score = 26.6 bits (57), Expect(2) = 1e-67
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 186 DHSRALIKEKLTADPDSEIATTSLRVSLM 214
>ref|NP_001076951.1| E3 SUMO-protein ligase PIAS4 [Bos taurus].
Length = 513
Score = 242 bits (618), Expect = 3e-64
Identities = 140/318 (44%), Positives = 195/318 (61%), Gaps = 6/318 (1%)
Frame = +2
Query: 17 ADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELY 196
A+ E K MVMS RVS+LQ+LLG+ GR+K G KHEL+T+AL L++ CSP + KIKELY
Sbjct: 3 AELVEAKNMVMSFRVSDLQMLLGFVGRSKSGLKHELVTRALQLVQFDCSPELFKKIKELY 62
Query: 197 RRRFPQKIMTPADLSIPSVHSSPMPATLSP-----STIPQLTYDGHXXXXXXXXXXXXXX 361
R+ +K P +P H P T+ S++P+ G
Sbjct: 63 ETRYAKKSSEP----VPQPHRPLDPLTMHSTYERASSVPRTPLTGPNIDYPVLYGKYLNG 118
Query: 362 KHELELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQ 541
L L P+++L KLPF+++LDEL+KPT L N+++ +E+ FALTP+
Sbjct: 119 LGRLPAKTLK-------PEVRLVKLPFFNMLDELLKPTELVPQNNEKLQESPCIFALTPR 171
Query: 542 QVQQISSSMDIS-GTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLP 718
QV+ I +S ++ G K VQV LR C S+TS PQED +PPN+ VKVN CS+PGY P
Sbjct: 172 QVELIRNSRELQPGVKA---VQVVLRICYSDTSSPQEDQYPPNIAVKVNHSYCSVPGYYP 228
Query: 719 PTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL* 898
K GVEPKRP RPIN+T L+ LS+ N I V+W G++YS+A+YLV+QL+S+ LL
Sbjct: 229 SNKPGVEPKRPCRPINLTHLMYLSSAT-NRITVTW-GNYGKSYSVALYLVRQLTSSELLQ 286
Query: 899 RLRAKGIRNPGSSRALIK 952
RL+ G+++P +AL+K
Sbjct: 287 RLKTIGVKHPELCKALVK 304
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,195,792
Number of extensions: 966113
Number of successful extensions: 2881
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2872
Number of HSP's successfully gapped: 9
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013324
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013324
(1026 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866579.1| PREDICTED: similar to Protein inhibitor of acti... 585 e-168
Alignment gi|XP_535524.2| PREDICTED: similar to Protein inhibitor of acti... 585 e-168
Alignment gi|XP_866551.1| PREDICTED: similar to Protein inhibitor of acti... 573 e-164
Alignment gi|XP_866565.1| PREDICTED: similar to Protein inhibitor of acti... 482 e-137
Alignment gi|XP_540278.2| PREDICTED: similar to Protein inhibitor of acti... 381 e-107
Alignment gi|XP_866481.1| PREDICTED: similar to Protein inhibitor of acti... 383 e-106
Alignment gi|XP_859310.1| PREDICTED: similar to Protein inhibitor of acti... 373 e-104
Alignment gi|XP_852829.1| PREDICTED: similar to protein inhibitor of acti... 338 4e-94
Alignment gi|XP_866422.1| PREDICTED: similar to protein inhibitor of acti... 333 7e-93
Alignment gi|XP_866387.1| PREDICTED: similar to protein inhibitor of acti... 333 7e-93
>ref|XP_866579.1| PREDICTED: similar to Protein inhibitor of activated STAT protein 1
(Gu binding protein) (GBP) (RNA helicase II binding
protein) (DEAD/H box-binding protein 1) isoform 8 [Canis
familiaris].
Length = 653
Score = 585 bits (1508), Expect(2) = e-168
Identities = 295/313 (94%), Positives = 296/313 (94%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL
Sbjct: 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHEL 373
YRRRFPQKIMTPADLSIP+VHSSPMPATLSPSTIPQLTYDGH KHEL
Sbjct: 61 YRRRFPQKIMTPADLSIPNVHSSPMPATLSPSTIPQLTYDGHPASSPLLPVSLLGPKHEL 120
Query: 374 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 553
ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ
Sbjct: 121 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 180
Query: 554 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG 733
ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG
Sbjct: 181 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG 240
Query: 734 VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAK 913
VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL RLRAK
Sbjct: 241 VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLLQRLRAK 300
Query: 914 GIRNPGSSRALIK 952
GIRNP SRALIK
Sbjct: 301 GIRNPDHSRALIK 313
Score = 26.2 bits (56), Expect(2) = e-168
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA 995
DH ++E +TADPDSEIA T+
Sbjct: 306 DHSRALIKEKLTADPDSEIATTS 328
>ref|XP_535524.2| PREDICTED: similar to Protein inhibitor of activated STAT protein 1
(Gu binding protein) (GBP) (RNA helicase II binding
protein) (DEAD/H box-binding protein 1) isoform 1 [Canis
familiaris].
Length = 651
Score = 585 bits (1508), Expect(2) = e-168
Identities = 295/313 (94%), Positives = 296/313 (94%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL
Sbjct: 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHEL 373
YRRRFPQKIMTPADLSIP+VHSSPMPATLSPSTIPQLTYDGH KHEL
Sbjct: 61 YRRRFPQKIMTPADLSIPNVHSSPMPATLSPSTIPQLTYDGHPASSPLLPVSLLGPKHEL 120
Query: 374 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 553
ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ
Sbjct: 121 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 180
Query: 554 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG 733
ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG
Sbjct: 181 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG 240
Query: 734 VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAK 913
VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL RLRAK
Sbjct: 241 VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLLQRLRAK 300
Query: 914 GIRNPGSSRALIK 952
GIRNP SRALIK
Sbjct: 301 GIRNPDHSRALIK 313
Score = 26.2 bits (56), Expect(2) = e-168
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA 995
DH ++E +TADPDSEIA T+
Sbjct: 306 DHSRALIKEKLTADPDSEIATTS 328
>ref|XP_866551.1| PREDICTED: similar to Protein inhibitor of activated STAT protein 1
(Gu binding protein) (GBP) (RNA helicase II binding
protein) (DEAD/H box-binding protein 1) isoform 6 [Canis
familiaris].
Length = 654
Score = 573 bits (1476), Expect(2) = e-164
Identities = 292/316 (92%), Positives = 293/316 (92%), Gaps = 3/316 (0%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL
Sbjct: 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHEL 373
YRRRFPQKIMTPADLSIP+VHSSPMPATLSPSTIPQLTYDGH KHEL
Sbjct: 61 YRRRFPQKIMTPADLSIPNVHSSPMPATLSPSTIPQLTYDGHPASSPLLPVSLLGPKHEL 120
Query: 374 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 553
ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ
Sbjct: 121 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 180
Query: 554 I---SSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPT 724
I S DISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPT
Sbjct: 181 IILTVFSRDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPT 240
Query: 725 KNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RL 904
KNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL RL
Sbjct: 241 KNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLLQRL 300
Query: 905 RAKGIRNPGSSRALIK 952
RAKGIRNP SRALIK
Sbjct: 301 RAKGIRNPDHSRALIK 316
Score = 26.2 bits (56), Expect(2) = e-164
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA 995
DH ++E +TADPDSEIA T+
Sbjct: 309 DHSRALIKEKLTADPDSEIATTS 331
>ref|XP_866565.1| PREDICTED: similar to Protein inhibitor of activated STAT protein 1
(Gu binding protein) (GBP) (RNA helicase II binding
protein) (DEAD/H box-binding protein 1) isoform 7 [Canis
familiaris].
Length = 597
Score = 482 bits (1240), Expect(2) = e-137
Identities = 252/304 (82%), Positives = 254/304 (83%)
Frame = +2
Query: 41 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI 220
MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI
Sbjct: 1 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI 60
Query: 221 MTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHELELPHLTSAL 400
MTPADLSI P++ S L
Sbjct: 61 MTPADLSI---------------------------------------------PNVHSTL 75
Query: 401 HPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMDISG 580
HPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMDISG
Sbjct: 76 HPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMDISG 135
Query: 581 TKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRP 760
TKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRP
Sbjct: 136 TKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRP 195
Query: 761 INITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAKGIRNPGSSR 940
INITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL RLRAKGIRNP SR
Sbjct: 196 INITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLLQRLRAKGIRNPDHSR 255
Query: 941 ALIK 952
ALIK
Sbjct: 256 ALIK 259
Score = 26.2 bits (56), Expect(2) = e-137
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA 995
DH ++E +TADPDSEIA T+
Sbjct: 252 DHSRALIKEKLTADPDSEIATTS 274
>ref|XP_540278.2| PREDICTED: similar to Protein inhibitor of activated STAT protein 3
isoform 1 [Canis familiaris].
Length = 628
Score = 381 bits (979), Expect(2) = e-107
Identities = 203/319 (63%), Positives = 240/319 (75%), Gaps = 6/319 (1%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MA+ ELK MVMS RVSELQVLLG+AGRNK GRKHELL KALHLLK+ C+P+VQMKIKEL
Sbjct: 1 MAELGELKHMVMSFRVSELQVLLGFAGRNKSGRKHELLAKALHLLKSSCAPSVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTI----PQLTYDGHXXXXXXXXXXXXXX 361
YRRRFP+K + P+DLS+ S+ P P SP + P L G
Sbjct: 61 YRRRFPRKTLGPSDLSLLSLPPGPPPVG-SPGPLTPIPPALLAPG----------TLLGP 109
Query: 362 KHELEL-PHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTP 538
K E+++ P L PVHPD+ ++ LPFY++ ELI+PT+LAS +SQRF E F FALTP
Sbjct: 110 KREVDMHPPLPQ---PVHPDVTMKPLPFYEVYGELIRPTTLASTSSQRFEEAHFTFALTP 166
Query: 539 QQVQQISSSMDI-SGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYL 715
QQVQQI +S ++ G KCD+T+QVQLRFCL ETSCPQED+FPPNL VKVN K C LPGYL
Sbjct: 167 QQVQQILTSREVLPGAKCDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYL 226
Query: 716 PPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL 895
PPTKNG EPKRPSRPINIT L RLS TVPNTIVV+W++E GRNYS++VYLV+QL++ LL
Sbjct: 227 PPTKNGAEPKRPSRPINITPLARLSATVPNTIVVNWSSEFGRNYSLSVYLVRQLTAGTLL 286
Query: 896 *RLRAKGIRNPGSSRALIK 952
+LRAKGIRNP SRALIK
Sbjct: 287 QKLRAKGIRNPDHSRALIK 305
Score = 26.2 bits (56), Expect(2) = e-107
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSE+A T+ S M
Sbjct: 298 DHSRALIKEKLTADPDSEVATTSLRVSLM 326
>ref|XP_866481.1| PREDICTED: similar to Protein inhibitor of activated STAT protein 1
(Gu binding protein) (GBP) (RNA helicase II binding
protein) (DEAD/H box-binding protein 1) isoform 2 [Canis
familiaris].
Length = 214
Score = 383 bits (983), Expect = e-106
Identities = 194/211 (91%), Positives = 195/211 (92%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL
Sbjct: 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHEL 373
YRRRFPQKIMTPADLSIP+VHSSPMPATLSPSTIPQLTYDGH KHEL
Sbjct: 61 YRRRFPQKIMTPADLSIPNVHSSPMPATLSPSTIPQLTYDGHPASSPLLPVSLLGPKHEL 120
Query: 374 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 553
ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ
Sbjct: 121 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 180
Query: 554 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQ 646
ISSSMDISGTKCDFTVQVQLRFCLSETS Q
Sbjct: 181 ISSSMDISGTKCDFTVQVQLRFCLSETSSTQ 211
>ref|XP_859310.1| PREDICTED: similar to Protein inhibitor of activated STAT protein 3
isoform 2 [Canis familiaris].
Length = 593
Score = 373 bits (958), Expect(2) = e-104
Identities = 194/314 (61%), Positives = 227/314 (72%), Gaps = 1/314 (0%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MA+ ELK MVMS RVSELQVLLG+AGRNK GRKHELL KALHLLK+ C+P+VQMKIKEL
Sbjct: 1 MAELGELKHMVMSFRVSELQVLLGFAGRNKSGRKHELLAKALHLLKSSCAPSVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHEL 373
YRRRFP+K + P+DLS+ S+ P P
Sbjct: 61 YRRRFPRKTLGPSDLSLLSLPPGPPP---------------------------------- 86
Query: 374 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 553
PVHPD+ ++ LPFY++ ELI+PT+LAS +SQRF E F FALTPQQVQQ
Sbjct: 87 ----------PVHPDVTMKPLPFYEVYGELIRPTTLASTSSQRFEEAHFTFALTPQQVQQ 136
Query: 554 ISSSMDI-SGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKN 730
I +S ++ G KCD+T+QVQLRFCL ETSCPQED+FPPNL VKVN K C LPGYLPPTKN
Sbjct: 137 ILTSREVLPGAKCDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYLPPTKN 196
Query: 731 GVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRA 910
G EPKRPSRPINIT L RLS TVPNTIVV+W++E GRNYS++VYLV+QL++ LL +LRA
Sbjct: 197 GAEPKRPSRPINITPLARLSATVPNTIVVNWSSEFGRNYSLSVYLVRQLTAGTLLQKLRA 256
Query: 911 KGIRNPGSSRALIK 952
KGIRNP SRALIK
Sbjct: 257 KGIRNPDHSRALIK 270
Score = 26.2 bits (56), Expect(2) = e-104
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSE+A T+ S M
Sbjct: 263 DHSRALIKEKLTADPDSEVATTSLRVSLM 291
>ref|XP_852829.1| PREDICTED: similar to protein inhibitor of activated STAT X isoform
alpha isoform 2 [Canis familiaris].
Length = 541
Score = 338 bits (866), Expect(2) = 4e-94
Identities = 177/305 (58%), Positives = 221/305 (72%), Gaps = 1/305 (0%)
Frame = +2
Query: 41 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI 220
MV S RVSELQVLLG+AGRNK GRKH+LL +ALHLLK+GCSPAVQ+KI+ELYRRR+P+ +
Sbjct: 1 MVSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIRELYRRRYPRTL 60
Query: 221 MTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHELELPHLTSAL 400
+DLS ++ SS ++P H K E+ + +
Sbjct: 61 EGLSDLS--TIKSSVFNLDVTP----------HSPSSPVGSVLLQDTKPTFEMQQPSPPI 108
Query: 401 HPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMD-IS 577
PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F FALTPQQV++I S D +
Sbjct: 109 PPVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFIFALTPQQVREICISRDFLP 168
Query: 578 GTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSR 757
G + D+TVQVQLR CL+ETSCPQED++P +LC+KVN K LPGY PP KNG+E KRP R
Sbjct: 169 GGRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGR 228
Query: 758 PINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAKGIRNPGSS 937
P+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+S +LL RL+ KGIRNP S
Sbjct: 229 PLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHS 288
Query: 938 RALIK 952
RALIK
Sbjct: 289 RALIK 293
Score = 26.6 bits (57), Expect(2) = 4e-94
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 286 DHSRALIKEKLTADPDSEIATTSLRVSLM 314
>ref|XP_866422.1| PREDICTED: similar to protein inhibitor of activated STAT X isoform
alpha isoform 5 [Canis familiaris].
Length = 546
Score = 333 bits (855), Expect(2) = 7e-93
Identities = 180/306 (58%), Positives = 222/306 (72%), Gaps = 2/306 (0%)
Frame = +2
Query: 41 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI 220
MV S RVSELQVLLG+AGRNK GRKH+LL +ALHLLK+GCSPAVQ+KI+ELYRRR+P+ +
Sbjct: 1 MVSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIRELYRRRYPRTL 60
Query: 221 MTPADLSIPSVHSSPMPATLSPSTI-PQLTYDGHXXXXXXXXXXXXXXKHELELPHLTSA 397
+DLS ++ SS S S + P L G H P +
Sbjct: 61 EGLSDLS--TIKSSVFNLDGSSSPVEPDLAVAG-----IHALPSTSVTPHSPSSPP-SPP 112
Query: 398 LHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMD-I 574
+ PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F FALTPQQV++I S D +
Sbjct: 113 IPPVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFIFALTPQQVREICISRDFL 172
Query: 575 SGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPS 754
G + D+TVQVQLR CL+ETSCPQED++P +LC+KVN K LPGY PP KNG+E KRP
Sbjct: 173 PGGRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPG 232
Query: 755 RPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAKGIRNPGS 934
RP+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+S +LL RL+ KGIRNP
Sbjct: 233 RPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDH 292
Query: 935 SRALIK 952
SRALIK
Sbjct: 293 SRALIK 298
Score = 26.6 bits (57), Expect(2) = 7e-93
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 291 DHSRALIKEKLTADPDSEIATTSLRVSLM 319
>ref|XP_866387.1| PREDICTED: similar to protein inhibitor of activated STAT X isoform
alpha isoform 4 [Canis familiaris].
Length = 543
Score = 333 bits (855), Expect(2) = 7e-93
Identities = 180/306 (58%), Positives = 222/306 (72%), Gaps = 2/306 (0%)
Frame = +2
Query: 41 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI 220
MV S RVSELQVLLG+AGRNK GRKH+LL +ALHLLK+GCSPAVQ+KI+ELYRRR+P+ +
Sbjct: 1 MVSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIRELYRRRYPRTL 60
Query: 221 MTPADLSIPSVHSSPMPATLSPSTI-PQLTYDGHXXXXXXXXXXXXXXKHELELPHLTSA 397
+DLS ++ SS S S + P L G H P +
Sbjct: 61 EGLSDLS--TIKSSVFNLDGSSSPVEPDLAVAG-----IHALPSTSVTPHSPSSPP-SPP 112
Query: 398 LHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMD-I 574
+ PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F FALTPQQV++I S D +
Sbjct: 113 IPPVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFIFALTPQQVREICISRDFL 172
Query: 575 SGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPS 754
G + D+TVQVQLR CL+ETSCPQED++P +LC+KVN K LPGY PP KNG+E KRP
Sbjct: 173 PGGRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPG 232
Query: 755 RPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAKGIRNPGS 934
RP+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+S +LL RL+ KGIRNP
Sbjct: 233 RPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDH 292
Query: 935 SRALIK 952
SRALIK
Sbjct: 293 SRALIK 298
Score = 26.6 bits (57), Expect(2) = 7e-93
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 291 DHSRALIKEKLTADPDSEIATTSLRVSLM 319
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,766,509
Number of extensions: 987642
Number of successful extensions: 2859
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2838
Number of HSP's successfully gapped: 30
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013324
(1026 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121797.2| PREDICTED: LOW QUALITY PROTEIN: e3 SUMO-prot... 582 e-167
Alignment gi|XP_003121801.2| PREDICTED: e3 SUMO-protein ligase PIAS1-like... 570 e-163
Alignment gi|XP_003125840.1| PREDICTED: e3 SUMO-protein ligase PIAS3 [Sus... 379 e-106
Alignment gi|XP_003354055.1| PREDICTED: e3 SUMO-protein ligase PIAS4 [Sus... 241 5e-64
Alignment gi|XP_003361664.1| PREDICTED: e3 SUMO-protein ligase PIAS2, par... 181 2e-47
Alignment gi|XP_003362022.1| PREDICTED: e3 SUMO-protein ligase PIAS2-like... 152 3e-37
>ref|XP_003121797.2| PREDICTED: LOW QUALITY PROTEIN: e3 SUMO-protein ligase PIAS1 [Sus
scrofa].
Length = 651
Score = 582 bits (1499), Expect(2) = e-167
Identities = 295/313 (94%), Positives = 295/313 (94%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL
Sbjct: 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHEL 373
YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTIPQLTYDGH KHEL
Sbjct: 61 YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHPASSPLLPVSLLGPKHEL 120
Query: 374 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 553
ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ
Sbjct: 121 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 180
Query: 554 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG 733
ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG
Sbjct: 181 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG 240
Query: 734 VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAK 913
VEPKRPSRPINITSLVRLSTTVPNTIVVS TAEIGRNYSMAVYLVKQLSSTVLL RLRAK
Sbjct: 241 VEPKRPSRPINITSLVRLSTTVPNTIVVSXTAEIGRNYSMAVYLVKQLSSTVLLQRLRAK 300
Query: 914 GIRNPGSSRALIK 952
GIRNP SRALIK
Sbjct: 301 GIRNPDHSRALIK 313
Score = 26.2 bits (56), Expect(2) = e-167
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA 995
DH ++E +TADPDSEIA T+
Sbjct: 306 DHSRALIKEKLTADPDSEIATTS 328
>ref|XP_003121801.2| PREDICTED: e3 SUMO-protein ligase PIAS1-like [Sus scrofa].
Length = 621
Score = 570 bits (1469), Expect = e-163
Identities = 287/304 (94%), Positives = 287/304 (94%)
Frame = +2
Query: 41 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI 220
MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI
Sbjct: 1 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI 60
Query: 221 MTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHELELPHLTSAL 400
MTPADLSIPSVHSSPMPATLSPSTIPQLTYDGH KHELELPHLTSAL
Sbjct: 61 MTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHPASSPLLPVSLLGPKHELELPHLTSAL 120
Query: 401 HPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMDISG 580
HPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMDISG
Sbjct: 121 HPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMDISG 180
Query: 581 TKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRP 760
TKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRP
Sbjct: 181 TKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRP 240
Query: 761 INITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAKGIRNPGSSR 940
INITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL RLRAKGIRNP SR
Sbjct: 241 INITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLLQRLRAKGIRNPDHSR 300
Query: 941 ALIK 952
ALIK
Sbjct: 301 ALIK 304
>ref|XP_003125840.1| PREDICTED: e3 SUMO-protein ligase PIAS3 [Sus scrofa].
Length = 628
Score = 379 bits (974), Expect(2) = e-106
Identities = 205/328 (62%), Positives = 242/328 (73%), Gaps = 15/328 (4%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MA+ ELK MVMS RVSELQVLLG+AGRNK GRKHELL KALHLLK+ C+P+VQMKIKEL
Sbjct: 1 MAELGELKHMVMSFRVSELQVLLGFAGRNKSGRKHELLAKALHLLKSSCAPSVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSI-------PSVHS----SPMP-ATLSPSTI--PQLTYDGHXXXX 331
YRRRFP+K + P+DLS+ P V S +P+P A L+P T+ P+ D H
Sbjct: 61 YRRRFPRKTLGPSDLSLLSLPPGTPPVGSPGPLAPIPPALLAPGTLLGPKREVDMHPP-- 118
Query: 332 XXXXXXXXXXKHELELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRE 511
LP PVHPD+ ++ LPFY++ ELI+PT+LAS +SQRF E
Sbjct: 119 ---------------LPQ------PVHPDVTMKPLPFYEIYGELIRPTTLASTSSQRFEE 157
Query: 512 TCFAFALTPQQVQQISSSMDI-SGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNT 688
F FALTPQQVQQI +S ++ G KCD+T+QVQLRFCL ETSCPQED+FPPNL VKVN
Sbjct: 158 AHFTFALTPQQVQQILTSREVLPGAKCDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNG 217
Query: 689 KPCSLPGYLPPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLV 868
K C LPGYLPPTKNG EPKRPSRPINIT L RLS TVPNTIVV+W++E GRNYS++VYLV
Sbjct: 218 KLCPLPGYLPPTKNGAEPKRPSRPINITPLARLSATVPNTIVVNWSSEFGRNYSLSVYLV 277
Query: 869 KQLSSTVLL*RLRAKGIRNPGSSRALIK 952
+QL++ LL +LRAKGIRNP SRALIK
Sbjct: 278 RQLTAGTLLQKLRAKGIRNPDHSRALIK 305
Score = 26.2 bits (56), Expect(2) = e-106
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSE+A T+ S M
Sbjct: 298 DHSRALIKEKLTADPDSEVATTSLRVSLM 326
>ref|XP_003354055.1| PREDICTED: e3 SUMO-protein ligase PIAS4 [Sus scrofa].
Length = 513
Score = 241 bits (615), Expect = 5e-64
Identities = 140/321 (43%), Positives = 198/321 (61%), Gaps = 9/321 (2%)
Frame = +2
Query: 17 ADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELY 196
A+ E K MVMS RVS+LQ+LLG+ GR+K G KHEL+T+AL L++ CSP + KIKELY
Sbjct: 3 AELVEAKNMVMSFRVSDLQMLLGFVGRSKSGLKHELVTRALQLVQFDCSPELFKKIKELY 62
Query: 197 RRRFPQKIMTPAD--------LSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXX 352
R+ +K P L++ S + +P T P + Y
Sbjct: 63 ETRYAKKSSEPTPQPHRPLDPLAMHSAYDRASSVPRTPLTGPNIDYP------------V 110
Query: 353 XXXKHELELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFAL 532
K+ L L + + P+++L KLPF+++LDEL+KPT L N+++ +E+ FAL
Sbjct: 111 LYGKYLNGLGRLPAKT--LKPEVRLVKLPFFNMLDELLKPTELVPQNNEKLQESPCIFAL 168
Query: 533 TPQQVQQISSSMDIS-GTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPG 709
TP+QV+ I +S ++ G K VQV LR C S+TS PQED +PPN+ VKVN CS+PG
Sbjct: 169 TPRQVELIRNSRELQPGVKA---VQVVLRICYSDTSSPQEDQYPPNIAVKVNHSYCSVPG 225
Query: 710 YLPPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTV 889
Y P K GVEPKRP RPIN+T L+ LS+ N I V+W G++YS+A+YLV+QL+S+
Sbjct: 226 YYPSNKPGVEPKRPCRPINLTHLMYLSSAT-NRITVTW-GNYGKSYSVALYLVRQLTSSE 283
Query: 890 LL*RLRAKGIRNPGSSRALIK 952
LL RL+ G+++P +AL+K
Sbjct: 284 LLQRLKTIGVKHPELCKALVK 304
>ref|XP_003361664.1| PREDICTED: e3 SUMO-protein ligase PIAS2, partial [Sus scrofa].
Length = 426
Score = 181 bits (459), Expect(2) = 2e-47
Identities = 86/127 (67%), Positives = 105/127 (82%)
Frame = +2
Query: 572 ISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRP 751
+ G + D+TVQVQLR CL+ETSCPQED++P +LC+KVN K LPGY PP KNG+E KRP
Sbjct: 3 LPGGRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRP 62
Query: 752 SRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAKGIRNPG 931
RP+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+S +LL RL+ KGIRNP
Sbjct: 63 GRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPD 122
Query: 932 SSRALIK 952
SRALIK
Sbjct: 123 HSRALIK 129
Score = 26.6 bits (57), Expect(2) = 2e-47
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 122 DHSRALIKEKLTADPDSEIATTSLRVSLM 150
>ref|XP_003362022.1| PREDICTED: e3 SUMO-protein ligase PIAS2-like, partial [Sus scrofa].
Length = 187
Score = 152 bits (384), Expect = 3e-37
Identities = 87/185 (47%), Positives = 112/185 (60%), Gaps = 10/185 (5%)
Frame = +2
Query: 41 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI 220
MV S RVSELQVLLG GRKH+LL +ALHLLK+GCSPAVQ+KI+ELYRRR+P+ +
Sbjct: 2 MVSSFRVSELQVLLGXXXXXXXGRKHDLLMRALHLLKSGCSPAVQIKIRELYRRRYPRTL 61
Query: 221 MTPADL-----SIPSVHSSPMP-----ATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHE 370
+DL S+ S+ S P A ++P + H K
Sbjct: 62 EGLSDLSTIKSSVFSLDGSSSPVEPDLAVAGIHSLPSTSVTPHSPPSPVGSVLLQDTKPT 121
Query: 371 LELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQ 550
E+ + + PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F FALTPQQV+
Sbjct: 122 FEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFIFALTPQQVR 181
Query: 551 QISSS 565
+I S
Sbjct: 182 EICIS 186
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,495,879
Number of extensions: 613747
Number of successful extensions: 1776
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1766
Number of HSP's successfully gapped: 9
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013324
(1026 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062637.2| E3 SUMO-protein ligase PIAS1 [Mus musculus]. 581 e-167
Alignment gi|NP_001159421.1| E3 SUMO-protein ligase PIAS3 isoform 3 [Mus ... 379 e-106
Alignment gi|NP_061282.2| E3 SUMO-protein ligase PIAS3 isoform 2 [Mus mus... 372 e-104
Alignment gi|NP_666247.1| E3 SUMO-protein ligase PIAS3 isoform 1 [Mus mus... 370 e-103
Alignment gi|NP_032628.3| E3 SUMO-protein ligase PIAS2 isoform 1 [Mus mus... 347 4e-97
Alignment gi|NP_001157639.1| E3 SUMO-protein ligase PIAS2 isoform 2 [Mus ... 347 4e-97
Alignment gi|NP_001157641.1| E3 SUMO-protein ligase PIAS2 isoform 4 [Mus ... 347 4e-97
Alignment gi|NP_001157640.1| E3 SUMO-protein ligase PIAS2 isoform 3 [Mus ... 338 2e-94
Alignment gi|NP_001157642.1| E3 SUMO-protein ligase PIAS2 isoform 5 [Mus ... 338 2e-94
Alignment gi|NP_067476.2| E3 SUMO-protein ligase PIAS4 [Mus musculus]. 244 6e-65
>ref|NP_062637.2| E3 SUMO-protein ligase PIAS1 [Mus musculus].
Length = 651
Score = 581 bits (1497), Expect(2) = e-167
Identities = 293/313 (93%), Positives = 294/313 (93%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL
Sbjct: 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHEL 373
YRRRFPQKIMTPADLSIP+VHSSPMP TLSPSTIPQLTYDGH KHEL
Sbjct: 61 YRRRFPQKIMTPADLSIPNVHSSPMPPTLSPSTIPQLTYDGHPASSPLLPVSLLGPKHEL 120
Query: 374 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 553
ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ
Sbjct: 121 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 180
Query: 554 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG 733
ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG
Sbjct: 181 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG 240
Query: 734 VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAK 913
VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGR YSMAVYLVKQLSSTVLL RLRAK
Sbjct: 241 VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRTYSMAVYLVKQLSSTVLLQRLRAK 300
Query: 914 GIRNPGSSRALIK 952
GIRNP SRALIK
Sbjct: 301 GIRNPDHSRALIK 313
Score = 26.2 bits (56), Expect(2) = e-167
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA 995
DH ++E +TADPDSEIA T+
Sbjct: 306 DHSRALIKEKLTADPDSEIATTS 328
>ref|NP_001159421.1| E3 SUMO-protein ligase PIAS3 isoform 3 [Mus musculus].
Length = 628
Score = 379 bits (972), Expect(2) = e-106
Identities = 202/319 (63%), Positives = 242/319 (75%), Gaps = 6/319 (1%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MA+ ELK MVMS RVSELQVLLG+AGRNK GRKHELL KALHLLK+ C+P+VQMKIKEL
Sbjct: 1 MAELGELKHMVMSFRVSELQVLLGFAGRNKSGRKHELLAKALHLLKSSCAPSVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVH--SSPM--PATLSPSTIPQLTYDGHXXXXXXXXXXXXXX 361
YRRRFP+K + P+DLS+ S+ +SP+ P L+P LT
Sbjct: 61 YRRRFPRKTLGPSDLSLLSLPPGTSPVGSPGPLAPIPPTLLT-----------PGTLLGP 109
Query: 362 KHELEL-PHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTP 538
K E+++ P L PVHPD+ ++ LPFY++ ELI+PT+LAS +SQRF E F FALTP
Sbjct: 110 KREVDMHPPLPQ---PVHPDVTMKPLPFYEVYGELIRPTTLASTSSQRFEEAHFTFALTP 166
Query: 539 QQVQQISSSMDI-SGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYL 715
QQ+QQI +S ++ G KCD+T+QVQLRFCL ETSCPQED+FPPNL VKVN K C LPGYL
Sbjct: 167 QQLQQILTSREVLPGAKCDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYL 226
Query: 716 PPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL 895
PPTKNG EPKRPSRPINIT L RLS TVPNTIVV+W++E GRNYS++VYLV+QL++ LL
Sbjct: 227 PPTKNGAEPKRPSRPINITPLARLSATVPNTIVVNWSSEFGRNYSLSVYLVRQLTAGTLL 286
Query: 896 *RLRAKGIRNPGSSRALIK 952
+LRAKGIRNP SRALIK
Sbjct: 287 QKLRAKGIRNPDHSRALIK 305
Score = 26.2 bits (56), Expect(2) = e-106
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSE+A T+ S M
Sbjct: 298 DHSRALIKEKLTADPDSEVATTSLRVSLM 326
>ref|NP_061282.2| E3 SUMO-protein ligase PIAS3 isoform 2 [Mus musculus].
Length = 593
Score = 372 bits (954), Expect(2) = e-104
Identities = 195/314 (62%), Positives = 228/314 (72%), Gaps = 1/314 (0%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MA+ ELK MVMS RVSELQVLLG+AGRNK GRKHELL KALHLLK+ C+P+VQMKIKEL
Sbjct: 1 MAELGELKHMVMSFRVSELQVLLGFAGRNKSGRKHELLAKALHLLKSSCAPSVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHEL 373
YRRRFP+K + P+DLS+ S L P T P
Sbjct: 61 YRRRFPRKTLGPSDLSLLS---------LPPGTSP------------------------- 86
Query: 374 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 553
PVHPD+ ++ LPFY++ ELI+PT+LAS +SQRF E F FALTPQQ+QQ
Sbjct: 87 ----------PVHPDVTMKPLPFYEVYGELIRPTTLASTSSQRFEEAHFTFALTPQQLQQ 136
Query: 554 ISSSMDI-SGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKN 730
I +S ++ G KCD+T+QVQLRFCL ETSCPQED+FPPNL VKVN K C LPGYLPPTKN
Sbjct: 137 ILTSREVLPGAKCDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYLPPTKN 196
Query: 731 GVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRA 910
G EPKRPSRPINIT L RLS TVPNTIVV+W++E GRNYS++VYLV+QL++ LL +LRA
Sbjct: 197 GAEPKRPSRPINITPLARLSATVPNTIVVNWSSEFGRNYSLSVYLVRQLTAGTLLQKLRA 256
Query: 911 KGIRNPGSSRALIK 952
KGIRNP SRALIK
Sbjct: 257 KGIRNPDHSRALIK 270
Score = 26.2 bits (56), Expect(2) = e-104
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSE+A T+ S M
Sbjct: 263 DHSRALIKEKLTADPDSEVATTSLRVSLM 291
>ref|NP_666247.1| E3 SUMO-protein ligase PIAS3 isoform 1 [Mus musculus].
Length = 619
Score = 370 bits (949), Expect(2) = e-103
Identities = 197/310 (63%), Positives = 236/310 (76%), Gaps = 6/310 (1%)
Frame = +2
Query: 41 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI 220
MVMS RVSELQVLLG+AGRNK GRKHELL KALHLLK+ C+P+VQMKIKELYRRRFP+K
Sbjct: 1 MVMSFRVSELQVLLGFAGRNKSGRKHELLAKALHLLKSSCAPSVQMKIKELYRRRFPRKT 60
Query: 221 MTPADLSIPSVH--SSPM--PATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHELEL-PH 385
+ P+DLS+ S+ +SP+ P L+P LT K E+++ P
Sbjct: 61 LGPSDLSLLSLPPGTSPVGSPGPLAPIPPTLLT-----------PGTLLGPKREVDMHPP 109
Query: 386 LTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSS 565
L PVHPD+ ++ LPFY++ ELI+PT+LAS +SQRF E F FALTPQQ+QQI +S
Sbjct: 110 LPQ---PVHPDVTMKPLPFYEVYGELIRPTTLASTSSQRFEEAHFTFALTPQQLQQILTS 166
Query: 566 MDI-SGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEP 742
++ G KCD+T+QVQLRFCL ETSCPQED+FPPNL VKVN K C LPGYLPPTKNG EP
Sbjct: 167 REVLPGAKCDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYLPPTKNGAEP 226
Query: 743 KRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAKGIR 922
KRPSRPINIT L RLS TVPNTIVV+W++E GRNYS++VYLV+QL++ LL +LRAKGIR
Sbjct: 227 KRPSRPINITPLARLSATVPNTIVVNWSSEFGRNYSLSVYLVRQLTAGTLLQKLRAKGIR 286
Query: 923 NPGSSRALIK 952
NP SRALIK
Sbjct: 287 NPDHSRALIK 296
Score = 26.2 bits (56), Expect(2) = e-103
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSE+A T+ S M
Sbjct: 289 DHSRALIKEKLTADPDSEVATTSLRVSLM 317
>ref|NP_032628.3| E3 SUMO-protein ligase PIAS2 isoform 1 [Mus musculus].
Length = 621
Score = 347 bits (891), Expect(2) = 4e-97
Identities = 182/324 (56%), Positives = 227/324 (70%), Gaps = 11/324 (3%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MAD EL+ MV S RVSELQVLLG+AGRNK GRKH+LL +ALHLLK+GCSPAVQ+KI+EL
Sbjct: 1 MADFEELRNMVSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIREL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSP----------STIPQLTYDGHXXXXXXXX 343
YRRR+P+ + DLS + + SP ++P + H
Sbjct: 61 YRRRYPRTLEGLCDLSTIKSSVFSLDGSSSPVEPDLPVAGIHSLPSTSITPHSPSSPVGS 120
Query: 344 XXXXXXKHELELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFA 523
K E+ + + PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F
Sbjct: 121 VLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFI 180
Query: 524 FALTPQQVQQISSSMD-ISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCS 700
FALTPQQV++I S D + G + D+TVQVQLR CL+ETSCPQED++P +LC+KVN K
Sbjct: 181 FALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFP 240
Query: 701 LPGYLPPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLS 880
LPGY PP KNG+E KRP RP+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+
Sbjct: 241 LPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLT 300
Query: 881 STVLL*RLRAKGIRNPGSSRALIK 952
S +LL RL+ KGIRNP SRALIK
Sbjct: 301 SAMLLQRLKMKGIRNPDHSRALIK 324
Score = 26.6 bits (57), Expect(2) = 4e-97
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 317 DHSRALIKEKLTADPDSEIATTSLRVSLM 345
>ref|NP_001157639.1| E3 SUMO-protein ligase PIAS2 isoform 2 [Mus musculus].
Length = 580
Score = 347 bits (891), Expect(2) = 4e-97
Identities = 182/324 (56%), Positives = 227/324 (70%), Gaps = 11/324 (3%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MAD EL+ MV S RVSELQVLLG+AGRNK GRKH+LL +ALHLLK+GCSPAVQ+KI+EL
Sbjct: 1 MADFEELRNMVSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIREL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSP----------STIPQLTYDGHXXXXXXXX 343
YRRR+P+ + DLS + + SP ++P + H
Sbjct: 61 YRRRYPRTLEGLCDLSTIKSSVFSLDGSSSPVEPDLPVAGIHSLPSTSITPHSPSSPVGS 120
Query: 344 XXXXXXKHELELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFA 523
K E+ + + PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F
Sbjct: 121 VLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFI 180
Query: 524 FALTPQQVQQISSSMD-ISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCS 700
FALTPQQV++I S D + G + D+TVQVQLR CL+ETSCPQED++P +LC+KVN K
Sbjct: 181 FALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFP 240
Query: 701 LPGYLPPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLS 880
LPGY PP KNG+E KRP RP+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+
Sbjct: 241 LPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLT 300
Query: 881 STVLL*RLRAKGIRNPGSSRALIK 952
S +LL RL+ KGIRNP SRALIK
Sbjct: 301 SAMLLQRLKMKGIRNPDHSRALIK 324
Score = 26.6 bits (57), Expect(2) = 4e-97
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 317 DHSRALIKEKLTADPDSEIATTSLRVSLM 345
>ref|NP_001157641.1| E3 SUMO-protein ligase PIAS2 isoform 4 [Mus musculus].
Length = 572
Score = 347 bits (891), Expect(2) = 4e-97
Identities = 182/324 (56%), Positives = 227/324 (70%), Gaps = 11/324 (3%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MAD EL+ MV S RVSELQVLLG+AGRNK GRKH+LL +ALHLLK+GCSPAVQ+KI+EL
Sbjct: 1 MADFEELRNMVSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIREL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSP----------STIPQLTYDGHXXXXXXXX 343
YRRR+P+ + DLS + + SP ++P + H
Sbjct: 61 YRRRYPRTLEGLCDLSTIKSSVFSLDGSSSPVEPDLPVAGIHSLPSTSITPHSPSSPVGS 120
Query: 344 XXXXXXKHELELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFA 523
K E+ + + PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F
Sbjct: 121 VLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFI 180
Query: 524 FALTPQQVQQISSSMD-ISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCS 700
FALTPQQV++I S D + G + D+TVQVQLR CL+ETSCPQED++P +LC+KVN K
Sbjct: 181 FALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFP 240
Query: 701 LPGYLPPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLS 880
LPGY PP KNG+E KRP RP+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+
Sbjct: 241 LPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLT 300
Query: 881 STVLL*RLRAKGIRNPGSSRALIK 952
S +LL RL+ KGIRNP SRALIK
Sbjct: 301 SAMLLQRLKMKGIRNPDHSRALIK 324
Score = 26.6 bits (57), Expect(2) = 4e-97
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 317 DHSRALIKEKLTADPDSEIATTSLRVSLM 345
>ref|NP_001157640.1| E3 SUMO-protein ligase PIAS2 isoform 3 [Mus musculus].
Length = 614
Score = 338 bits (868), Expect(2) = 2e-94
Identities = 177/315 (56%), Positives = 221/315 (70%), Gaps = 11/315 (3%)
Frame = +2
Query: 41 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI 220
MV S RVSELQVLLG+AGRNK GRKH+LL +ALHLLK+GCSPAVQ+KI+ELYRRR+P+ +
Sbjct: 3 MVSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIRELYRRRYPRTL 62
Query: 221 MTPADLSIPSVHSSPMPATLSP----------STIPQLTYDGHXXXXXXXXXXXXXXKHE 370
DLS + + SP ++P + H K
Sbjct: 63 EGLCDLSTIKSSVFSLDGSSSPVEPDLPVAGIHSLPSTSITPHSPSSPVGSVLLQDTKPT 122
Query: 371 LELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQ 550
E+ + + PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F FALTPQQV+
Sbjct: 123 FEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFIFALTPQQVR 182
Query: 551 QISSSMD-ISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTK 727
+I S D + G + D+TVQVQLR CL+ETSCPQED++P +LC+KVN K LPGY PP K
Sbjct: 183 EICISRDFLPGGRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPK 242
Query: 728 NGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLR 907
NG+E KRP RP+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+S +LL RL+
Sbjct: 243 NGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLK 302
Query: 908 AKGIRNPGSSRALIK 952
KGIRNP SRALIK
Sbjct: 303 MKGIRNPDHSRALIK 317
Score = 26.6 bits (57), Expect(2) = 2e-94
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 310 DHSRALIKEKLTADPDSEIATTSLRVSLM 338
>ref|NP_001157642.1| E3 SUMO-protein ligase PIAS2 isoform 5 [Mus musculus].
Length = 565
Score = 338 bits (868), Expect(2) = 2e-94
Identities = 177/315 (56%), Positives = 221/315 (70%), Gaps = 11/315 (3%)
Frame = +2
Query: 41 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKI 220
MV S RVSELQVLLG+AGRNK GRKH+LL +ALHLLK+GCSPAVQ+KI+ELYRRR+P+ +
Sbjct: 3 MVSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIRELYRRRYPRTL 62
Query: 221 MTPADLSIPSVHSSPMPATLSP----------STIPQLTYDGHXXXXXXXXXXXXXXKHE 370
DLS + + SP ++P + H K
Sbjct: 63 EGLCDLSTIKSSVFSLDGSSSPVEPDLPVAGIHSLPSTSITPHSPSSPVGSVLLQDTKPT 122
Query: 371 LELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQ 550
E+ + + PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F FALTPQQV+
Sbjct: 123 FEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFIFALTPQQVR 182
Query: 551 QISSSMD-ISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTK 727
+I S D + G + D+TVQVQLR CL+ETSCPQED++P +LC+KVN K LPGY PP K
Sbjct: 183 EICISRDFLPGGRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPK 242
Query: 728 NGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLR 907
NG+E KRP RP+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+S +LL RL+
Sbjct: 243 NGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLK 302
Query: 908 AKGIRNPGSSRALIK 952
KGIRNP SRALIK
Sbjct: 303 MKGIRNPDHSRALIK 317
Score = 26.6 bits (57), Expect(2) = 2e-94
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 310 DHSRALIKEKLTADPDSEIATTSLRVSLM 338
>ref|NP_067476.2| E3 SUMO-protein ligase PIAS4 [Mus musculus].
Length = 507
Score = 244 bits (624), Expect = 6e-65
Identities = 140/318 (44%), Positives = 197/318 (61%), Gaps = 6/318 (1%)
Frame = +2
Query: 17 ADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELY 196
A+ E K MVMS RVS+LQ+LLG+ GR+K G KHEL+T+AL L++ CSP + KIKELY
Sbjct: 3 AELVEAKNMVMSFRVSDLQMLLGFVGRSKSGLKHELVTRALQLVQFDCSPELFKKIKELY 62
Query: 197 RRRFPQKI-----MTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXX 361
R+ +K P L ++HS P P+ + Y +
Sbjct: 63 ETRYAKKSAEPGPQAPRPLDPLALHSMPRTPLSGPTVDYPVLYGKYLNGLG--------- 113
Query: 362 KHELELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQ 541
LP T + P+++L KLPF+++LDEL+KPT L ++++ +E+ FALTP+
Sbjct: 114 ----RLPTKT-----LKPEVRLVKLPFFNMLDELLKPTELVPQSAEKLQESPCIFALTPR 164
Query: 542 QVQQISSSMDIS-GTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLP 718
QV+ I +S ++ G K VQV LR C S+TSCPQED +PPN+ VKVN CS+PGY P
Sbjct: 165 QVEMIRNSRELQPGVKA---VQVVLRICYSDTSCPQEDQYPPNIAVKVNHSYCSVPGYYP 221
Query: 719 PTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL* 898
K GVEPKRP RPIN+T L+ LS+ N I V+W G++YS+A+YLV+QL+S+ LL
Sbjct: 222 SNKPGVEPKRPCRPINLTHLMYLSSAT-NRITVTW-GNYGKSYSVALYLVRQLTSSDLLQ 279
Query: 899 RLRAKGIRNPGSSRALIK 952
RL+ G+++P +AL+K
Sbjct: 280 RLKTIGVKHPELCKALVK 297
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,649,394
Number of extensions: 851565
Number of successful extensions: 2522
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2502
Number of HSP's successfully gapped: 20
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013324
(1026 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057250.1| E3 SUMO-protein ligase PIAS1 [Homo sapiens]. 585 e-168
Alignment gi|NP_006090.2| E3 SUMO-protein ligase PIAS3 [Homo sapiens]. 380 e-106
Alignment gi|NP_004662.2| E3 SUMO-protein ligase PIAS2 isoform beta [Homo... 348 2e-97
Alignment gi|NP_775298.1| E3 SUMO-protein ligase PIAS2 isoform alpha [Hom... 348 2e-97
Alignment gi|NP_056981.2| E3 SUMO-protein ligase PIAS4 [Homo sapiens]. 244 9e-65
>ref|NP_057250.1| E3 SUMO-protein ligase PIAS1 [Homo sapiens].
Length = 651
Score = 585 bits (1508), Expect(2) = e-168
Identities = 295/313 (94%), Positives = 296/313 (94%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL
Sbjct: 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVHSSPMPATLSPSTIPQLTYDGHXXXXXXXXXXXXXXKHEL 373
YRRRFPQKIMTPADLSIP+VHSSPMPATLSPSTIPQLTYDGH KHEL
Sbjct: 61 YRRRFPQKIMTPADLSIPNVHSSPMPATLSPSTIPQLTYDGHPASSPLLPVSLLGPKHEL 120
Query: 374 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 553
ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ
Sbjct: 121 ELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQ 180
Query: 554 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG 733
ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG
Sbjct: 181 ISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNG 240
Query: 734 VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL*RLRAK 913
VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL RLRAK
Sbjct: 241 VEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLLQRLRAK 300
Query: 914 GIRNPGSSRALIK 952
GIRNP SRALIK
Sbjct: 301 GIRNPDHSRALIK 313
Score = 26.2 bits (56), Expect(2) = e-168
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA 995
DH ++E +TADPDSEIA T+
Sbjct: 306 DHSRALIKEKLTADPDSEIATTS 328
>ref|NP_006090.2| E3 SUMO-protein ligase PIAS3 [Homo sapiens].
Length = 628
Score = 380 bits (975), Expect(2) = e-106
Identities = 204/319 (63%), Positives = 243/319 (76%), Gaps = 6/319 (1%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MA+ ELK MVMS RVSELQVLLG+AGRNK GRKHELL KALHLLK+ C+P+VQMKIKEL
Sbjct: 1 MAELGELKHMVMSFRVSELQVLLGFAGRNKSGRKHELLAKALHLLKSSCAPSVQMKIKEL 60
Query: 194 YRRRFPQKIMTPADLSIPSVH--SSPM--PATLSPSTIPQLTYDGHXXXXXXXXXXXXXX 361
YRRRFP+K + P+DLS+ S+ +SP+ P L+P P L G
Sbjct: 61 YRRRFPRKTLGPSDLSLLSLPPGTSPVGSPGPLAPIP-PTLLAPG----------TLLGP 109
Query: 362 KHELEL-PHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTP 538
K E+++ P L PVHPD+ ++ LPFY++ ELI+PT+LAS +SQRF E F FALTP
Sbjct: 110 KREVDMHPPLPQ---PVHPDVTMKPLPFYEVYGELIRPTTLASTSSQRFEEAHFTFALTP 166
Query: 539 QQVQQISSSMDI-SGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYL 715
QQVQQI +S ++ G KCD+T+QVQLRFCL ETSCPQED+FPPNL VKVN K C LPGYL
Sbjct: 167 QQVQQILTSREVLPGAKCDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYL 226
Query: 716 PPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL 895
PPTKNG EPKRPSRPINIT L RLS TVPNTIVV+W++E GRNYS++VYLV+QL++ LL
Sbjct: 227 PPTKNGAEPKRPSRPINITPLARLSATVPNTIVVNWSSEFGRNYSLSVYLVRQLTAGTLL 286
Query: 896 *RLRAKGIRNPGSSRALIK 952
+LRAKGIRNP SRALIK
Sbjct: 287 QKLRAKGIRNPDHSRALIK 305
Score = 26.2 bits (56), Expect(2) = e-106
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSE+A T+ S M
Sbjct: 298 DHSRALIKEKLTADPDSEVATTSLRVSLM 326
>ref|NP_004662.2| E3 SUMO-protein ligase PIAS2 isoform beta [Homo sapiens].
Length = 621
Score = 348 bits (894), Expect(2) = 2e-97
Identities = 186/324 (57%), Positives = 233/324 (71%), Gaps = 11/324 (3%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MAD EL+ MV S RVSELQVLLG+AGRNK GRKH+LL +ALHLLK+GCSPAVQ+KI+EL
Sbjct: 1 MADFEELRNMVSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIREL 60
Query: 194 YRRRFPQKIMTPADLSI--PSVHS-----SPMPATLSPS---TIPQLTYDGHXXXXXXXX 343
YRRR+P+ + +DLS SV S SP+ L+ + ++P + H
Sbjct: 61 YRRRYPRTLEGLSDLSTIKSSVFSLDGGSSPVEPDLAVAGIHSLPSTSVTPHSPSSPVGS 120
Query: 344 XXXXXXKHELELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFA 523
K E+ + + PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F
Sbjct: 121 VLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFI 180
Query: 524 FALTPQQVQQISSSMD-ISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCS 700
FALTPQQV++I S D + G + D+TVQVQLR CL+ETSCPQED++P +LC+KVN K
Sbjct: 181 FALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFP 240
Query: 701 LPGYLPPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLS 880
LPGY PP KNG+E KRP RP+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+
Sbjct: 241 LPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLT 300
Query: 881 STVLL*RLRAKGIRNPGSSRALIK 952
S +LL RL+ KGIRNP SRALIK
Sbjct: 301 SAMLLQRLKMKGIRNPDHSRALIK 324
Score = 26.6 bits (57), Expect(2) = 2e-97
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 317 DHSRALIKEKLTADPDSEIATTSLRVSLM 345
>ref|NP_775298.1| E3 SUMO-protein ligase PIAS2 isoform alpha [Homo sapiens].
Length = 572
Score = 348 bits (894), Expect(2) = 2e-97
Identities = 186/324 (57%), Positives = 233/324 (71%), Gaps = 11/324 (3%)
Frame = +2
Query: 14 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKEL 193
MAD EL+ MV S RVSELQVLLG+AGRNK GRKH+LL +ALHLLK+GCSPAVQ+KI+EL
Sbjct: 1 MADFEELRNMVSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIREL 60
Query: 194 YRRRFPQKIMTPADLSI--PSVHS-----SPMPATLSPS---TIPQLTYDGHXXXXXXXX 343
YRRR+P+ + +DLS SV S SP+ L+ + ++P + H
Sbjct: 61 YRRRYPRTLEGLSDLSTIKSSVFSLDGGSSPVEPDLAVAGIHSLPSTSVTPHSPSSPVGS 120
Query: 344 XXXXXXKHELELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFA 523
K E+ + + PVHPD++L+ LPFYD+LD LIKPTSL + QRF+E F
Sbjct: 121 VLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFI 180
Query: 524 FALTPQQVQQISSSMD-ISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCS 700
FALTPQQV++I S D + G + D+TVQVQLR CL+ETSCPQED++P +LC+KVN K
Sbjct: 181 FALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFP 240
Query: 701 LPGYLPPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLS 880
LPGY PP KNG+E KRP RP+NITSLVRLS+ VPN I +SW +EIG+NYSM+VYLV+QL+
Sbjct: 241 LPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLT 300
Query: 881 STVLL*RLRAKGIRNPGSSRALIK 952
S +LL RL+ KGIRNP SRALIK
Sbjct: 301 SAMLLQRLKMKGIRNPDHSRALIK 324
Score = 26.6 bits (57), Expect(2) = 2e-97
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 930 DHLEL*LRE-MTADPDSEIAXTA*GXSTM 1013
DH ++E +TADPDSEIA T+ S M
Sbjct: 317 DHSRALIKEKLTADPDSEIATTSLRVSLM 345
>ref|NP_056981.2| E3 SUMO-protein ligase PIAS4 [Homo sapiens].
Length = 510
Score = 244 bits (623), Expect = 9e-65
Identities = 141/318 (44%), Positives = 195/318 (61%), Gaps = 6/318 (1%)
Frame = +2
Query: 17 ADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELY 196
A+ E K MVMS RVS+LQ+LLG+ GR+K G KHEL+T+AL L++ CSP + KIKELY
Sbjct: 3 AELVEAKNMVMSFRVSDLQMLLGFVGRSKSGLKHELVTRALQLVQFDCSPELFKKIKELY 62
Query: 197 RRRFPQKIMTPADLSIPSVHSSPMPATLSPS-----TIPQLTYDGHXXXXXXXXXXXXXX 361
R+ +K PA P H P T+ + +P+ G
Sbjct: 63 ETRYAKKNSEPA----PQPHRPLDPLTMHSTYDRAGAVPRTPLAGPNIDYPVLYGKYLNG 118
Query: 362 KHELELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQ 541
L L P+++L KLPF+++LDEL+KPT L N+++ +E+ FALTP+
Sbjct: 119 LGRLPAKTLK-------PEVRLVKLPFFNMLDELLKPTELVPQNNEKLQESPCIFALTPR 171
Query: 542 QVQQISSSMDIS-GTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLP 718
QV+ I +S ++ G K VQV LR C S+TSCPQED +PPN+ VKVN CS+PGY P
Sbjct: 172 QVELIRNSRELQPGVKA---VQVVLRICYSDTSCPQEDQYPPNIAVKVNHSYCSVPGYYP 228
Query: 719 PTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLL* 898
K GVEPKRP RPIN+T L+ LS+ N I V+W G++YS+A+YLV+QL+S+ LL
Sbjct: 229 SNKPGVEPKRPCRPINLTHLMYLSSAT-NRITVTW-GNYGKSYSVALYLVRQLTSSELLQ 286
Query: 899 RLRAKGIRNPGSSRALIK 952
RL+ G+++P +AL+K
Sbjct: 287 RLKTIGVKHPELCKALVK 304
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,306,996
Number of extensions: 993540
Number of successful extensions: 2819
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2804
Number of HSP's successfully gapped: 10
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013324
(1026 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118886.1| Sus scrofa unplaced genomic scaffold ChrUScaf3148 888 0.0
Sscrofa_Chr01 888 0.0
>gb|JH118886.1| Sus scrofa unplaced genomic scaffold ChrUScaf3148
Length = 187201
Score = 888 bits (448), Expect = 0.0
Identities = 448/448 (100%)
Strand = Plus / Minus
Query: 35 aagcaaatggttatgagccttagagtttctgaactccaagtactgttgggctacgccggg 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123196 aagcaaatggttatgagccttagagtttctgaactccaagtactgttgggctacgccggg 123137
Query: 95 agaaacaagcacggacgcaaacacgaacttctcacaaaagccctgcatttgctaaaggct 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123136 agaaacaagcacggacgcaaacacgaacttctcacaaaagccctgcatttgctaaaggct 123077
Query: 155 ggctgcagtcctgctgtacaaatgaaaattaaagaactctataggcggaggttcccccag 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123076 ggctgcagtcctgctgtacaaatgaaaattaaagaactctataggcggaggttcccccag 123017
Query: 215 aaaatcatgacgcctgcggacttgtccatccccagcgtacattcaagtcctatgccagca 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123016 aaaatcatgacgcctgcggacttgtccatccccagcgtacattcaagtcctatgccagca 122957
Query: 275 actttgtctccatctaccattccacagctcacttatgatggtcaccctgcatcatcaccg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122956 actttgtctccatctaccattccacagctcacttatgatggtcaccctgcatcatcaccg 122897
Query: 335 ttactccctgtttctcttttgggacctaaacatgaactggaactcccacatcttacatca 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122896 ttactccctgtttctcttttgggacctaaacatgaactggaactcccacatcttacatca 122837
Query: 395 gctcttcacccagtccatccggatataaaacttcaaaaattaccattttatgatttactg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122836 gctcttcacccagtccatccggatataaaacttcaaaaattaccattttatgatttactg 122777
Query: 455 gatgaactgataaaacccaccagtctag 482
||||||||||||||||||||||||||||
Sbjct: 122776 gatgaactgataaaacccaccagtctag 122749
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 707 ggttatcttccacctactaaaaatggtgtggaaccaaagcgacccagccgaccaattaat 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85201 ggttatcttccacctactaaaaatggtgtggaaccaaagcgacccagccgaccaattaat 85142
Query: 767 atcacctcacttgtccgattgtccacaactgtaccaaacaccattgttgtttcatggact 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85141 atcacctcacttgtccgattgtccacaactgtaccaaacaccattgttgtttcatggact 85082
Query: 827 gcagaaattgggaga 841
|||||||||||||||
Sbjct: 85081 gcagaaattgggaga 85067
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 614 aggttttgtttatcagaaaccagttgtccacaagaagatcacttcccacccaatctttgt 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85935 aggttttgtttatcagaaaccagttgtccacaagaagatcacttcccacccaatctttgt 85876
Query: 674 gtgaaagtgaatacaaaaccttgcagccttccag 707
||||||||||||||||||||||||||||||||||
Sbjct: 85875 gtgaaagtgaatacaaaaccttgcagccttccag 85842
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 480 tagcatcagacaacagtcagcgctttcgagaaacctgttttgcatttgccttgacaccac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89622 tagcatcagacaacagtcagcgctttcgagaaacctgttttgcatttgccttgacaccac 89563
Query: 540 aacaagtgcagcaaatcagtagttccatg 568
|||||||||||||||||||||||||||||
Sbjct: 89562 aacaagtgcagcaaatcagtagttccatg 89534
Score = 165 bits (83), Expect = 6e-38
Identities = 103/107 (96%), Gaps = 2/107 (1%)
Strand = Plus / Minus
Query: 842 aactattccatggcagtatatcttgtaaaacaattgtcctcaacagttcttctttaaagg 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 77853 aactattccatggcagtatatcttgtaaaacaattgtcctcaacagttcttcttcagagg 77794
Query: 902 ttacgagcaaagggaataaggaatccnggatca-tctagagctttaa 947
|||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 77793 ttacgagcaaagggaataaggaatcc-ggatcattctagagctttaa 77748
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 568 ggatatttctgggaccaaatgtgacttcacagtgcaggtccagttaaggt 617
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89283 ggatatttctgggaccaaatgtgacttcacagtgcaggtccagttaaggt 89234
>Sscrofa_Chr01
|| Length = 315321322
Score = 888 bits (448), Expect = 0.0
Identities = 448/448 (100%)
Strand = Plus / Plus
Query: 35 aagcaaatggttatgagccttagagtttctgaactccaagtactgttgggctacgccggg 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183773088 aagcaaatggttatgagccttagagtttctgaactccaagtactgttgggctacgccggg 183773147
Query: 95 agaaacaagcacggacgcaaacacgaacttctcacaaaagccctgcatttgctaaaggct 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183773148 agaaacaagcacggacgcaaacacgaacttctcacaaaagccctgcatttgctaaaggct 183773207
Query: 155 ggctgcagtcctgctgtacaaatgaaaattaaagaactctataggcggaggttcccccag 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183773208 ggctgcagtcctgctgtacaaatgaaaattaaagaactctataggcggaggttcccccag 183773267
Query: 215 aaaatcatgacgcctgcggacttgtccatccccagcgtacattcaagtcctatgccagca 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183773268 aaaatcatgacgcctgcggacttgtccatccccagcgtacattcaagtcctatgccagca 183773327
Query: 275 actttgtctccatctaccattccacagctcacttatgatggtcaccctgcatcatcaccg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183773328 actttgtctccatctaccattccacagctcacttatgatggtcaccctgcatcatcaccg 183773387
Query: 335 ttactccctgtttctcttttgggacctaaacatgaactggaactcccacatcttacatca 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183773388 ttactccctgtttctcttttgggacctaaacatgaactggaactcccacatcttacatca 183773447
Query: 395 gctcttcacccagtccatccggatataaaacttcaaaaattaccattttatgatttactg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183773448 gctcttcacccagtccatccggatataaaacttcaaaaattaccattttatgatttactg 183773507
Query: 455 gatgaactgataaaacccaccagtctag 482
||||||||||||||||||||||||||||
Sbjct: 183773508 gatgaactgataaaacccaccagtctag 183773535
Score = 252 bits (127), Expect = 3e-64
Identities = 134/135 (99%), Gaps = 1/135 (0%)
Strand = Plus / Plus
Query: 707 ggttatcttccacctactaaaaatggtgtggaaccaaagcgacccagccgaccaattaat 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183814705 ggttatcttccacctactaaaaatggtgtggaaccaaagcgacccagccgaccaattaat 183814764
Query: 767 atcacctcacttgtccgattgtccacaactgtaccaaacaccattgttgtttcatggact 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 183814765 atcacctcacttgtccgattgtccacaactgtaccaaacaccattgttgtttcat-gact 183814823
Query: 827 gcagaaattgggaga 841
|||||||||||||||
Sbjct: 183814824 gcagaaattgggaga 183814838
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 614 aggttttgtttatcagaaaccagttgtccacaagaagatcacttcccacccaatctttgt 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183813971 aggttttgtttatcagaaaccagttgtccacaagaagatcacttcccacccaatctttgt 183814030
Query: 674 gtgaaagtgaatacaaaaccttgcagccttccag 707
||||||||||||||||||||||||||||||||||
Sbjct: 183814031 gtgaaagtgaatacaaaaccttgcagccttccag 183814064
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 480 tagcatcagacaacagtcagcgctttcgagaaacctgttttgcatttgccttgacaccac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183810301 tagcatcagacaacagtcagcgctttcgagaaacctgttttgcatttgccttgacaccac 183810360
Query: 540 aacaagtgcagcaaatcagtagttccatg 568
|||||||||||||||||||||||||||||
Sbjct: 183810361 aacaagtgcagcaaatcagtagttccatg 183810389
Score = 165 bits (83), Expect = 6e-38
Identities = 103/107 (96%), Gaps = 2/107 (1%)
Strand = Plus / Plus
Query: 842 aactattccatggcagtatatcttgtaaaacaattgtcctcaacagttcttctttaaagg 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 183821897 aactattccatggcagtatatcttgtaaaacaattgtcctcaacagttcttcttcagagg 183821956
Query: 902 ttacgagcaaagggaataaggaatccnggatca-tctagagctttaa 947
|||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 183821957 ttacgagcaaagggaataaggaatcc-ggatcattctagagctttaa 183822002
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 568 ggatatttctgggaccaaatgtgacttcacagtgcaggtccagttaaggt 617
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183810640 ggatatttctgggaccaaatgtgacttcacagtgcaggtccagttaaggt 183810689
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 tgacagacgcaagatggcggacagtgcggaactaaag 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 183734150 tgacagacgcaagatggcggacagtgcggaactaaag 183734186
Score = 73.8 bits (37), Expect = 2e-10
Identities = 65/71 (91%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 950 aagagaaat-gactgcggatccagacagtgaaatagctanca-cagcctga-ggttnctc 1006
||||||||| ||||||||||||||||||||||||||||| | |||||||| |||| |||
Sbjct: 183835361 aagagaaattgactgcggatccagacagtgaaatagctacaaccagcctgagggtttctc 183835420
Query: 1007 tactatgtcca 1017
|||||||||||
Sbjct: 183835421 tactatgtcca 183835431
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,198,907
Number of extensions: 184
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 14
Length of query: 1026
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1005
Effective length of database: 2,808,413,156
Effective search space: 2822455221780
Effective search space used: 2822455221780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)