Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013325
(1232 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534367.2| PREDICTED: similar to isocitrate dehydrogenase ... 700 0.0
Alignment gi|XP_861552.1| PREDICTED: similar to isocitrate dehydrogenase ... 671 0.0
Alignment gi|XP_861581.1| PREDICTED: similar to isocitrate dehydrogenase ... 649 0.0
Alignment gi|XP_851930.1| PREDICTED: similar to isocitrate dehydrogenase ... 434 e-122
Alignment gi|XP_867343.1| PREDICTED: similar to Isocitrate dehydrogenase ... 331 8e-91
Alignment gi|XP_538201.2| PREDICTED: similar to Isocitrate dehydrogenase ... 331 8e-91
Alignment gi|XP_867331.1| PREDICTED: similar to Isocitrate dehydrogenase ... 327 2e-89
Alignment gi|XP_542534.2| PREDICTED: similar to Isocitrate dehydrogenase ... 317 2e-86
Alignment gi|XP_861495.1| PREDICTED: similar to isocitrate dehydrogenase ... 305 4e-83
Alignment gi|XP_861522.1| PREDICTED: similar to isocitrate dehydrogenase ... 278 6e-75
>ref|XP_534367.2| PREDICTED: similar to isocitrate dehydrogenase 3, beta subunit
isoform a precursor isoform 1 [Canis familiaris].
Length = 385
Score = 700 bits (1807), Expect = 0.0
Identities = 354/385 (91%), Positives = 356/385 (92%)
Frame = +2
Query: 23 MAALSGVRWLTRALVAAPNPGAWRSLXXXXXXXXXXXXXXEDVRVEGAFPVTMLPGDGVG 202
MAALSGVRWLTRALVAAPNPGAWR+L ED+RVEGAFPVTMLPGDGVG
Sbjct: 1 MAALSGVRWLTRALVAAPNPGAWRNLGTSAVAHAASRSQAEDMRVEGAFPVTMLPGDGVG 60
Query: 203 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 382
PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME
Sbjct: 61 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 120
Query: 383 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 562
YKGELASYDMRLRRKLDLFANVVHVKSLPGY TRHNNLDLVIIREQTEGEYSSLEHESAR
Sbjct: 121 YKGELASYDMRLRRKLDLFANVVHVKSLPGYKTRHNNLDLVIIREQTEGEYSSLEHESAR 180
Query: 563 GVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELY 742
GVIECLKIVTRTKSQRIAKFAFDYATKKGR KVTAVHKANIMKLGDGLFLQCCEEVAELY
Sbjct: 181 GVIECLKIVTRTKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY 240
Query: 743 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXXXXXXXPGESYSAEY 922
PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN PGESYSAEY
Sbjct: 241 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY 300
Query: 923 AVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT 1102
AVFE GARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT
Sbjct: 301 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT 360
Query: 1103 RDMGGYSTTTDFIKSVIGHLHPHGG 1177
RDMGGYSTTTDFIKSVIGHLHPHGG
Sbjct: 361 RDMGGYSTTTDFIKSVIGHLHPHGG 385
>ref|XP_861552.1| PREDICTED: similar to isocitrate dehydrogenase 3, beta subunit
isoform b precursor isoform 5 [Canis familiaris].
Length = 383
Score = 671 bits (1732), Expect = 0.0
Identities = 343/383 (89%), Positives = 348/383 (90%), Gaps = 1/383 (0%)
Frame = +2
Query: 23 MAALSGVRWLTRALVAAPNPGAWRSLXXXXXXXXXXXXXXEDVRVEGAFPVTMLPGDGVG 202
MAALSGVRWLTRALVAAPNPGAWR+L ED+RVEGAFPVTMLPGDGVG
Sbjct: 1 MAALSGVRWLTRALVAAPNPGAWRNLGTSAVAHAASRSQAEDMRVEGAFPVTMLPGDGVG 60
Query: 203 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 382
PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME
Sbjct: 61 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 120
Query: 383 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 562
YKGELASYDMRLRRKLDLFANVVHVKSLPGY TRHNNLDLVIIREQTEGEYSSLEHESAR
Sbjct: 121 YKGELASYDMRLRRKLDLFANVVHVKSLPGYKTRHNNLDLVIIREQTEGEYSSLEHESAR 180
Query: 563 GVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELY 742
GVIECLKIVTRTKSQRIAKFAFDYATKKGR KVTAVHKANIMKLGDGLFLQCCEEVAELY
Sbjct: 181 GVIECLKIVTRTKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY 240
Query: 743 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXXXXXXXPGESYSAEY 922
PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN PGESYSAEY
Sbjct: 241 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY 300
Query: 923 AVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT 1102
AVFE GARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT
Sbjct: 301 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT 360
Query: 1103 RDMGGYSTTTDFIKSVIGHL-HP 1168
DMGGY+T DF ++VIG L HP
Sbjct: 361 SDMGGYATCQDFTEAVIGALPHP 383
>ref|XP_861581.1| PREDICTED: similar to isocitrate dehydrogenase 3, beta subunit
isoform b precursor isoform 6 [Canis familiaris].
Length = 392
Score = 649 bits (1675), Expect = 0.0
Identities = 334/387 (86%), Positives = 344/387 (88%), Gaps = 1/387 (0%)
Frame = +2
Query: 11 PAANMAALSGVRWLTRALVAAPNPGAWRSLXXXXXXXXXXXXXXEDVRVEGAFPVTMLPG 190
P ++ A + V ++ALVAAPNPGAWR+L ED+RVEGAFPVTMLPG
Sbjct: 9 PTPDLIACASV---SQALVAAPNPGAWRNLGTSAVAHAASRSQAEDMRVEGAFPVTMLPG 65
Query: 191 DGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIH 370
DGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIH
Sbjct: 66 DGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIH 125
Query: 371 TPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEH 550
TPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGY TRHNNLDLVIIREQTEGEYSSLEH
Sbjct: 126 TPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYKTRHNNLDLVIIREQTEGEYSSLEH 185
Query: 551 ESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEV 730
ESARGVIECLKIVTRTKSQRIAKFAFDYATKKGR KVTAVHKANIMKLGDGLFLQCCEEV
Sbjct: 186 ESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEV 245
Query: 731 AELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXXXXXXXPGESY 910
AELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN PGESY
Sbjct: 246 AELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESY 305
Query: 911 SAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVG 1090
SAEYAVFE GARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVG
Sbjct: 306 SAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVG 365
Query: 1091 KVRTRDMGGYSTTTDFIKSVIGHL-HP 1168
KVRT DMGGY+T DF ++VIG L HP
Sbjct: 366 KVRTSDMGGYATCQDFTEAVIGALPHP 392
>ref|XP_851930.1| PREDICTED: similar to isocitrate dehydrogenase 3 (NAD+) beta [Canis
familiaris].
Length = 367
Score = 434 bits (1117), Expect = e-122
Identities = 231/304 (75%), Positives = 241/304 (79%), Gaps = 2/304 (0%)
Frame = +2
Query: 323 LSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDL 502
+ SMKENKVAI GKIHTP EYKGELA YDMRLR LD FAN+VHVKSLPGY T+HN+LDL
Sbjct: 73 VESMKENKVAIAGKIHTPREYKGELAPYDMRLRPTLDSFANIVHVKSLPGYKTQHNSLDL 132
Query: 503 VIIREQTEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKAN 682
V IR+QTEGEYSSLEHESAR V ECLK VTRTK QRI VTAVHKAN
Sbjct: 133 VTIRKQTEGEYSSLEHESARAVSECLKTVTRTKLQRI---------------VTAVHKAN 177
Query: 683 IMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNX 862
MKLGDGLFLQCCEEVAELYPK+KFET IIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN
Sbjct: 178 SMKLGDGLFLQCCEEVAELYPKMKFETTIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNL 237
Query: 863 XXXXXXXXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEY 1042
PGESYSAEYAVFEMG RHPFAQ VGRN ANPTA L +ASN LRHL+LEY
Sbjct: 238 AAGLIGGAGVVPGESYSAEYAVFEMGPRHPFAQVVGRNTANPTATLPAASNTLRHLSLEY 297
Query: 1043 HSNMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHLHPHGG*SPLFPPTSQG--PY 1216
SNMIA+AVKKVIKVGK+ TRDM Y T TDF KSVIGHLHPH PLFP TSQG Y
Sbjct: 298 RSNMIAEAVKKVIKVGKMWTRDMSSYGTRTDF-KSVIGHLHPH-QLDPLFPSTSQGHTTY 355
Query: 1217 TSLQ 1228
TSLQ
Sbjct: 356 TSLQ 359
>ref|XP_867343.1| PREDICTED: similar to Isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial precursor (Isocitric dehydrogenase)
(NAD(+)-specific ICDH) isoform 7 [Canis familiaris].
Length = 352
Score = 331 bits (849), Expect = 8e-91
Identities = 172/334 (51%), Positives = 222/334 (66%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 340
G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A EE + + +++
Sbjct: 12 GRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADEEDIRNAIMAIRR 68
Query: 341 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 520
N+VA+ G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE
Sbjct: 69 NRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDIDILIVREN 128
Query: 521 TEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGD 700
TEGEYSSLEHES GV+E LKI+T+ KS RIA++AF A + GR KVTAVHKANIMKLGD
Sbjct: 129 TEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGD 188
Query: 701 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXX 880
GLFLQCC+EVA YP+I FE MI+DN MQLV P QFDV+VMPNLYGNI++N
Sbjct: 189 GLFLQCCKEVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVG 248
Query: 881 XXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIA 1060
G +Y YAVFE R+ +NIANPTA LL++ ML HL L ++ I
Sbjct: 249 GPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIR 308
Query: 1061 DAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 1162
AV + + T D+GG TT++ I+ +I H+
Sbjct: 309 KAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHI 342
>ref|XP_538201.2| PREDICTED: similar to Isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial precursor (Isocitric dehydrogenase)
(NAD(+)-specific ICDH) isoform 1 [Canis familiaris].
Length = 392
Score = 331 bits (849), Expect = 8e-91
Identities = 172/334 (51%), Positives = 222/334 (66%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 340
G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A EE + + +++
Sbjct: 52 GRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADEEDIRNAIMAIRR 108
Query: 341 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 520
N+VA+ G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE
Sbjct: 109 NRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDIDILIVREN 168
Query: 521 TEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGD 700
TEGEYSSLEHES GV+E LKI+T+ KS RIA++AF A + GR KVTAVHKANIMKLGD
Sbjct: 169 TEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGD 228
Query: 701 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXX 880
GLFLQCC+EVA YP+I FE MI+DN MQLV P QFDV+VMPNLYGNI++N
Sbjct: 229 GLFLQCCKEVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVG 288
Query: 881 XXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIA 1060
G +Y YAVFE R+ +NIANPTA LL++ ML HL L ++ I
Sbjct: 289 GPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIR 348
Query: 1061 DAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 1162
AV + + T D+GG TT++ I+ +I H+
Sbjct: 349 KAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHI 382
>ref|XP_867331.1| PREDICTED: similar to Isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial precursor (Isocitric dehydrogenase)
(NAD(+)-specific ICDH) isoform 6 [Canis familiaris].
Length = 335
Score = 327 bits (837), Expect = 2e-89
Identities = 169/328 (51%), Positives = 219/328 (66%)
Frame = +2
Query: 179 MLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAII 358
M+PGDG+GPELM VK VF+ A VPV+F+E H+S + A EE + + +++ N+VA+
Sbjct: 1 MIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADEEDIRNAIMAIRRNRVALK 57
Query: 359 GKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYS 538
G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE TEGEYS
Sbjct: 58 GNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDIDILIVRENTEGEYS 117
Query: 539 SLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQC 718
SLEHES GV+E LKI+T+ KS RIA++AF A + GR KVTAVHKANIMKLGDGLFLQC
Sbjct: 118 SLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQC 177
Query: 719 CEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXXXXXXXP 898
C+EVA YP+I FE MI+DN MQLV P QFDV+VMPNLYGNI++N
Sbjct: 178 CKEVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVA 237
Query: 899 GESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKV 1078
G +Y YAVFE R+ +NIANPTA LL++ ML HL L ++ I AV
Sbjct: 238 GANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLAS 297
Query: 1079 IKVGKVRTRDMGGYSTTTDFIKSVIGHL 1162
+ + T D+GG TT++ I+ +I H+
Sbjct: 298 MDNENMHTPDIGGQGTTSEAIQDIIRHI 325
>ref|XP_542534.2| PREDICTED: similar to Isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial precursor (Isocitric dehydrogenase)
(NAD(+)-specific ICDH) [Canis familiaris].
Length = 389
Score = 317 bits (811), Expect = 2e-86
Identities = 167/336 (49%), Positives = 219/336 (65%), Gaps = 1/336 (0%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMAS-EEKLEQVLSSMK 337
G VTM+PGDG+GPELM VK VF+ A VPV+F+E V N S EE + + +++
Sbjct: 55 GRHTVTMIPGDGIGPELMLHVKTVFRHACVPVDFEE----VVVNCTSCEEDIHNAIMAVR 110
Query: 338 ENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIRE 517
N+VA+ G + T + R LDL+ANV+H KSLPG T+H ++D++++RE
Sbjct: 111 RNRVALKGNLETDHNLPPSHKCRNNMFRTTLDLYANVIHFKSLPGVETQHKDVDILVVRE 170
Query: 518 QTEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLG 697
TEGEYS+LEHES GVIE LKI+T+ KS RIA++AF A + R KVT VHKANIMKLG
Sbjct: 171 NTEGEYSNLEHESVTGVIESLKIITKAKSFRIAQYAFQLAQEMERKKVTVVHKANIMKLG 230
Query: 698 DGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXX 877
DGLFLQCC EVA YP++ FE MI+DN MQLV P QFDV+VMPNLYGNI+++
Sbjct: 231 DGLFLQCCREVASHYPQLTFEGMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNSICTGLV 290
Query: 878 XXXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMI 1057
PG +Y +AVFE +R +NIANPTAMLL++ ML +L L ++ I
Sbjct: 291 GGAGLVPGANYGHTHAVFETASRQSARNLANKNIANPTAMLLASCIMLDYLQLHSYATSI 350
Query: 1058 ADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHLH 1165
AV ++ V T D+GG STT DFI ++I H++
Sbjct: 351 RAAVLASMENKNVHTPDIGGQSTTLDFIHNIIDHIN 386
>ref|XP_861495.1| PREDICTED: similar to isocitrate dehydrogenase 3 (NAD+) beta isoform
3 [Canis familiaris].
Length = 166
Score = 305 bits (782), Expect = 4e-83
Identities = 150/163 (92%), Positives = 150/163 (92%)
Frame = +2
Query: 689 KLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXX 868
KLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN
Sbjct: 4 KLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAA 63
Query: 869 XXXXXXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHS 1048
PGESYSAEYAVFE GARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHS
Sbjct: 64 GLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHS 123
Query: 1049 NMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHLHPHGG 1177
NMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHLHPHGG
Sbjct: 124 NMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHLHPHGG 166
>ref|XP_861522.1| PREDICTED: similar to isocitrate dehydrogenase 3, beta subunit
isoform b precursor isoform 4 [Canis familiaris].
Length = 162
Score = 278 bits (712), Expect = 6e-75
Identities = 140/162 (86%), Positives = 143/162 (88%), Gaps = 1/162 (0%)
Frame = +2
Query: 686 MKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXX 865
MKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN
Sbjct: 1 MKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLA 60
Query: 866 XXXXXXXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYH 1045
PGESYSAEYAVFE GARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYH
Sbjct: 61 AGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYH 120
Query: 1046 SNMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL-HP 1168
SNMIADAVKKVIKVGKVRT DMGGY+T DF ++VIG L HP
Sbjct: 121 SNMIADAVKKVIKVGKVRTSDMGGYATCQDFTEAVIGALPHP 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,880,425
Number of extensions: 1384859
Number of successful extensions: 5256
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 5234
Number of HSP's successfully gapped: 18
Length of query: 410
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 305
Effective length of database: 15,374,224
Effective search space: 4689138320
Effective search space used: 4689138320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013325
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013325
(1232 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139344.1| isocitrate dehydrogenase [NAD] subunit beta,... 691 0.0
Alignment gi|NP_001161346.1| isocitrate dehydrogenase [NAD] subunit beta,... 664 0.0
Alignment gi|NP_001069781.1| isocitrate dehydrogenase [NAD] subunit gamma... 332 4e-91
Alignment gi|NP_777069.1| isocitrate dehydrogenase [NAD] subunit alpha, m... 260 2e-69
Alignment gi|XP_002683942.1| PREDICTED: isocitrate dehydrogenase-like, pa... 70 3e-12
>ref|NP_001139344.1| isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform 2
precursor [Bos taurus].
Length = 385
Score = 691 bits (1784), Expect = 0.0
Identities = 351/385 (91%), Positives = 354/385 (91%)
Frame = +2
Query: 23 MAALSGVRWLTRALVAAPNPGAWRSLXXXXXXXXXXXXXXEDVRVEGAFPVTMLPGDGVG 202
MAALS VRWLTRALVAAPNPGAWRSL EDVRVEGAFPVTMLPGDGVG
Sbjct: 1 MAALSRVRWLTRALVAAPNPGAWRSLCTSTVAQASSRTQGEDVRVEGAFPVTMLPGDGVG 60
Query: 203 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 382
PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME
Sbjct: 61 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 120
Query: 383 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 562
YKGELASYDMRLRRKLDLFANVVHVKSLPGY TRHNNLDLVIIREQTEGEYSSLEHESAR
Sbjct: 121 YKGELASYDMRLRRKLDLFANVVHVKSLPGYKTRHNNLDLVIIREQTEGEYSSLEHESAR 180
Query: 563 GVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELY 742
GVIECLKIVTRTKSQRIAKFAFDYATKKGR KVTAVHKANIMKLGDGLFLQCCEEVAELY
Sbjct: 181 GVIECLKIVTRTKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY 240
Query: 743 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXXXXXXXPGESYSAEY 922
PKIKFE MIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN PGESYSAEY
Sbjct: 241 PKIKFEKMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY 300
Query: 923 AVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT 1102
AVFE GARHPFAQAVGRNIANPTAMLLSASNMLRHLNLE+HSNMIA+AVKKVIKVGKVRT
Sbjct: 301 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEHHSNMIAEAVKKVIKVGKVRT 360
Query: 1103 RDMGGYSTTTDFIKSVIGHLHPHGG 1177
RDMGGYSTTTDFIKSVIGHLHP+GG
Sbjct: 361 RDMGGYSTTTDFIKSVIGHLHPYGG 385
>ref|NP_001161346.1| isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform 1
precursor [Bos taurus].
Length = 383
Score = 664 bits (1712), Expect = 0.0
Identities = 339/380 (89%), Positives = 344/380 (90%)
Frame = +2
Query: 23 MAALSGVRWLTRALVAAPNPGAWRSLXXXXXXXXXXXXXXEDVRVEGAFPVTMLPGDGVG 202
MAALS VRWLTRALVAAPNPGAWRSL EDVRVEGAFPVTMLPGDGVG
Sbjct: 1 MAALSRVRWLTRALVAAPNPGAWRSLCTSTVAQASSRTQGEDVRVEGAFPVTMLPGDGVG 60
Query: 203 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 382
PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME
Sbjct: 61 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 120
Query: 383 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 562
YKGELASYDMRLRRKLDLFANVVHVKSLPGY TRHNNLDLVIIREQTEGEYSSLEHESAR
Sbjct: 121 YKGELASYDMRLRRKLDLFANVVHVKSLPGYKTRHNNLDLVIIREQTEGEYSSLEHESAR 180
Query: 563 GVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELY 742
GVIECLKIVTRTKSQRIAKFAFDYATKKGR KVTAVHKANIMKLGDGLFLQCCEEVAELY
Sbjct: 181 GVIECLKIVTRTKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY 240
Query: 743 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXXXXXXXPGESYSAEY 922
PKIKFE MIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN PGESYSAEY
Sbjct: 241 PKIKFEKMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY 300
Query: 923 AVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT 1102
AVFE GARHPFAQAVGRNIANPTAMLLSASNMLRHLNLE+HSNMIA+AVKKVIKVGKVRT
Sbjct: 301 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEHHSNMIAEAVKKVIKVGKVRT 360
Query: 1103 RDMGGYSTTTDFIKSVIGHL 1162
DMGGY+T DF ++VIG L
Sbjct: 361 SDMGGYATCQDFTEAVIGAL 380
>ref|NP_001069781.1| isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial precursor
[Bos taurus].
Length = 392
Score = 332 bits (851), Expect = 4e-91
Identities = 173/339 (51%), Positives = 221/339 (65%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 340
G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S A EE + + +++
Sbjct: 52 GRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVSST---ADEEDIRNAIMAIRR 108
Query: 341 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 520
N+VA+ G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE
Sbjct: 109 NRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDIDILIVREN 168
Query: 521 TEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGD 700
TEGEYSSLEHES GV+E LKI+T+ KS RIA++AF A + GR KVTAVHKANIMKLGD
Sbjct: 169 TEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFQLAQESGRKKVTAVHKANIMKLGD 228
Query: 701 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXX 880
GLFLQCC EVA YP+I FE MI+DN MQLV P QFDV+VMPNLYGNI++N
Sbjct: 229 GLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVG 288
Query: 881 XXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIA 1060
G +Y YAVFE R+ +NIANPTA LL++ ML HL L ++ I
Sbjct: 289 GPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIR 348
Query: 1061 DAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHLHPHGG 1177
AV + + T D+GG TT++ I+ +I H+ G
Sbjct: 349 KAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHIRVING 387
>ref|NP_777069.1| isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial precursor
[Bos taurus].
Length = 366
Score = 260 bits (664), Expect = 2e-69
Identities = 141/332 (42%), Positives = 205/332 (61%), Gaps = 2/332 (0%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLE-QVLSSMK 337
G VT++PGDG+GPE+ AV ++F AA P++++E +++ +Q + + + SM
Sbjct: 30 GVKTVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVAAIQGPGGKWMIPPEAKESMD 89
Query: 338 ENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIRE 517
+NK+ + G + TP+ S ++ LR+ DL+ANV S+ GY T ++++++V IRE
Sbjct: 90 KNKMGLKGPLKTPIA--AGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYHDVNIVTIRE 147
Query: 518 QTEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLG 697
TEGEYS +EH GV++ +K++T S+RIA+FAF+YA RS VTAVHKANIM++
Sbjct: 148 NTEGEYSGIEHVIVDGVVQSIKLITEAASKRIAEFAFEYARNNHRSNVTAVHKANIMRMS 207
Query: 698 DGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXX 877
DGLFLQ C EVAE IKF M +D C+ +VQ+P QFDVLVMPNLYG+I+ +
Sbjct: 208 DGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLI 267
Query: 878 XXXXXXPGESYSAE-YAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNM 1054
P + A A+FE G+++ANPTA+LLSA MLRH+ L H+
Sbjct: 268 GGLGVTPSGNIGANGVAIFE-SVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAAK 326
Query: 1055 IADAVKKVIKVGKVRTRDMGGYSTTTDFIKSV 1150
I A IK GK T+D+GG S +DF + +
Sbjct: 327 IETACFATIKDGKSLTKDLGGNSKCSDFTEEI 358
>ref|XP_002683942.1| PREDICTED: isocitrate dehydrogenase-like, partial [Bos taurus].
Length = 306
Score = 70.5 bits (171), Expect = 3e-12
Identities = 74/278 (26%), Positives = 121/278 (43%), Gaps = 56/278 (20%)
Frame = +2
Query: 173 VTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKL----------EQV 322
V + GDG G ++ + +V AA + + ++ A E+ E+
Sbjct: 31 VPFIEGDGTGADITPVMIKVVDAAVQKAYGGKRKIYWMEVYAGEKATKVYGPDVWLPEET 90
Query: 323 LSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFA---NVVHVKSLPGYMTRHNN 493
L +K+ V+I G + TP+ G + S ++ LR++LDL+ V + K +P +
Sbjct: 91 LDVVKDYVVSIKGPLTTPVG--GGIRSLNVALRQQLDLYVCLRPVRYFKGVPSPVREPEK 148
Query: 494 LDLVIIREQTEGEYSSLEH----ESARGVIECL-------------------KIVTRTKS 604
D+VI RE +E Y+ +E+ E A+ +I+ L K V+R +
Sbjct: 149 TDMVIFRENSEDIYAGIEYMAESEQAKELIQFLQTKLGVKKIRFPATSSIGIKPVSREGT 208
Query: 605 QRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLF------LQCCEEVAELY---PKIKF 757
+R+ + A YA R+ VT VHK NIMK +G F L E A+L P KF
Sbjct: 209 ERLVRKALQYAIDNDRASVTLVHKGNIMKFTEGGFRDWGYALAQKEFGAQLIDGGPWCKF 268
Query: 758 ET-----------MIIDNCCMQLVQNPYQFDVLVMPNL 838
+ I D Q++ P ++DV+ NL
Sbjct: 269 KNPKTGREIIVKDSIADAFLQQILLRPAEYDVIATLNL 306
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,806,130
Number of extensions: 1345468
Number of successful extensions: 4870
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4858
Number of HSP's successfully gapped: 5
Length of query: 410
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,207,134
Effective search space: 4333175870
Effective search space used: 4333175870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013325
(1232 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038040.1| isocitrate dehydrogenase [NAD] subunit beta,... 706 0.0
Alignment gi|XP_003361645.1| PREDICTED: isocitrate dehydrogenase [NAD] su... 569 e-162
Alignment gi|XP_003360543.1| PREDICTED: isocitrate dehydrogenase [NAD] su... 329 2e-90
Alignment gi|XP_003135546.1| PREDICTED: isocitrate dehydrogenase [NAD] su... 329 2e-90
Alignment gi|XP_003135545.1| PREDICTED: isocitrate dehydrogenase [NAD] su... 329 2e-90
Alignment gi|XP_003135520.1| PREDICTED: isocitrate dehydrogenase [NAD] su... 329 2e-90
Alignment gi|XP_001927373.3| PREDICTED: isocitrate dehydrogenase [NAD] su... 258 6e-69
>ref|NP_001038040.1| isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [Sus
scrofa].
Length = 385
Score = 706 bits (1821), Expect = 0.0
Identities = 358/385 (92%), Positives = 358/385 (92%)
Frame = +2
Query: 23 MAALSGVRWLTRALVAAPNPGAWRSLXXXXXXXXXXXXXXEDVRVEGAFPVTMLPGDGVG 202
MAALSGVRWLTRALVAA NPGAWRSL EDVRVEGAFPVTMLPGDGVG
Sbjct: 1 MAALSGVRWLTRALVAAANPGAWRSLSTSVVAQAASRSQAEDVRVEGAFPVTMLPGDGVG 60
Query: 203 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 382
PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME
Sbjct: 61 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 120
Query: 383 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 562
YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR
Sbjct: 121 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 180
Query: 563 GVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELY 742
GVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELY
Sbjct: 181 GVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELY 240
Query: 743 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXXXXXXXPGESYSAEY 922
PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN PGESYSAEY
Sbjct: 241 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY 300
Query: 923 AVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT 1102
AVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT
Sbjct: 301 AVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT 360
Query: 1103 RDMGGYSTTTDFIKSVIGHLHPHGG 1177
RDMGGYSTTTDFIKSVIGHLHPHGG
Sbjct: 361 RDMGGYSTTTDFIKSVIGHLHPHGG 385
>ref|XP_003361645.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit beta,
mitochondrial-like [Sus scrofa].
Length = 354
Score = 569 bits (1466), Expect = e-162
Identities = 290/311 (93%), Positives = 293/311 (94%), Gaps = 1/311 (0%)
Frame = +2
Query: 239 AASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRL 418
AASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRL
Sbjct: 44 AASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRL 103
Query: 419 RRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRT 598
RRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRT
Sbjct: 104 RRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRT 163
Query: 599 KSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDN 778
KSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDN
Sbjct: 164 KSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDN 223
Query: 779 CCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXXXXXXXPGESYSAEYAVFEMGARHPFA 958
CCMQLVQNPYQFDVLVMPNLYGNIIDN PGESYSAEYAVFEMGARHPFA
Sbjct: 224 CCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFEMGARHPFA 283
Query: 959 QAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRTRDMGGYSTTTDF 1138
QAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT DMGGY+T DF
Sbjct: 284 QAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRTSDMGGYATCQDF 343
Query: 1139 IKSVIGHL-HP 1168
++VIG L HP
Sbjct: 344 TEAVIGALSHP 354
>ref|XP_003360543.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial-like [Sus scrofa].
Length = 398
Score = 329 bits (843), Expect = 2e-90
Identities = 172/334 (51%), Positives = 221/334 (66%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 340
G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A EE + + +++
Sbjct: 58 GRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADEEDIRNAIMAIRR 114
Query: 341 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 520
N+VA+ G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE
Sbjct: 115 NRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDVDILIVREN 174
Query: 521 TEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGD 700
TEGEYSSLEHES GV+E LKI+T+ KS RIA++AF A + GR KVTAVHKANIMKLGD
Sbjct: 175 TEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGD 234
Query: 701 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXX 880
GLFLQCC+EVA YP I FE MI+DN MQLV P QFDV+VMPNLYGNI++N
Sbjct: 235 GLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVG 294
Query: 881 XXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIA 1060
G +Y YAVFE R+ +NIANPTA LL++ ML HL L ++ I
Sbjct: 295 GPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIR 354
Query: 1061 DAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 1162
AV + + T D+GG TT++ I+ +I H+
Sbjct: 355 KAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHI 388
>ref|XP_003135546.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial-like isoform 2 [Sus scrofa].
Length = 388
Score = 329 bits (843), Expect = 2e-90
Identities = 172/334 (51%), Positives = 221/334 (66%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 340
G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A EE + + +++
Sbjct: 48 GRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADEEDIRNAIMAIRR 104
Query: 341 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 520
N+VA+ G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE
Sbjct: 105 NRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDVDILIVREN 164
Query: 521 TEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGD 700
TEGEYSSLEHES GV+E LKI+T+ KS RIA++AF A + GR KVTAVHKANIMKLGD
Sbjct: 165 TEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGD 224
Query: 701 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXX 880
GLFLQCC+EVA YP I FE MI+DN MQLV P QFDV+VMPNLYGNI++N
Sbjct: 225 GLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVG 284
Query: 881 XXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIA 1060
G +Y YAVFE R+ +NIANPTA LL++ ML HL L ++ I
Sbjct: 285 GPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIR 344
Query: 1061 DAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 1162
AV + + T D+GG TT++ I+ +I H+
Sbjct: 345 KAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHI 378
>ref|XP_003135545.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 392
Score = 329 bits (843), Expect = 2e-90
Identities = 172/334 (51%), Positives = 221/334 (66%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 340
G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A EE + + +++
Sbjct: 52 GRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADEEDIRNAIMAIRR 108
Query: 341 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 520
N+VA+ G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE
Sbjct: 109 NRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDVDILIVREN 168
Query: 521 TEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGD 700
TEGEYSSLEHES GV+E LKI+T+ KS RIA++AF A + GR KVTAVHKANIMKLGD
Sbjct: 169 TEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGD 228
Query: 701 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXX 880
GLFLQCC+EVA YP I FE MI+DN MQLV P QFDV+VMPNLYGNI++N
Sbjct: 229 GLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVG 288
Query: 881 XXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIA 1060
G +Y YAVFE R+ +NIANPTA LL++ ML HL L ++ I
Sbjct: 289 GPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIR 348
Query: 1061 DAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 1162
AV + + T D+GG TT++ I+ +I H+
Sbjct: 349 KAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHI 382
>ref|XP_003135520.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial [Sus scrofa].
Length = 450
Score = 329 bits (843), Expect = 2e-90
Identities = 172/334 (51%), Positives = 221/334 (66%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 340
G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A EE + + +++
Sbjct: 110 GRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADEEDIRNAIMAIRR 166
Query: 341 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 520
N+VA+ G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE
Sbjct: 167 NRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDVDILIVREN 226
Query: 521 TEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGD 700
TEGEYSSLEHES GV+E LKI+T+ KS RIA++AF A + GR KVTAVHKANIMKLGD
Sbjct: 227 TEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGD 286
Query: 701 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXX 880
GLFLQCC+EVA YP I FE MI+DN MQLV P QFDV+VMPNLYGNI++N
Sbjct: 287 GLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVG 346
Query: 881 XXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIA 1060
G +Y YAVFE R+ +NIANPTA LL++ ML HL L ++ I
Sbjct: 347 GPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIR 406
Query: 1061 DAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 1162
AV + + T D+GG TT++ I+ +I H+
Sbjct: 407 KAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHI 440
>ref|XP_001927373.3| PREDICTED: isocitrate dehydrogenase [NAD] subunit alpha,
mitochondrial [Sus scrofa].
Length = 366
Score = 258 bits (658), Expect = 6e-69
Identities = 140/332 (42%), Positives = 204/332 (61%), Gaps = 2/332 (0%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLE-QVLSSMK 337
G VT++PGDG+GPE+ AV ++F AA P++++E +++ +Q + + + SM
Sbjct: 30 GVKTVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPPEAKESMD 89
Query: 338 ENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIRE 517
+NK+ + G + TP+ S ++ LR+ DL+ANV S+ GY T + ++++V IRE
Sbjct: 90 KNKMGLKGPLKTPIA--AGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRE 147
Query: 518 QTEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLG 697
TEGEYS +EH GV++ +K++T S+RIA+FAF+YA RS VTAVHKANIM++
Sbjct: 148 NTEGEYSGIEHVIVDGVVQSIKLITEGASKRIAEFAFEYARNNHRSNVTAVHKANIMRMS 207
Query: 698 DGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXX 877
DGLFLQ C EVAE IKF M +D C+ +VQ+P QFDVLVMPNLYG+I+ +
Sbjct: 208 DGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLI 267
Query: 878 XXXXXXPGESYSAE-YAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNM 1054
P + A A+FE G+++ANPTA+LLSA MLRH+ L H+
Sbjct: 268 GGLGVTPSGNIGANGVAIFE-SVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAAK 326
Query: 1055 IADAVKKVIKVGKVRTRDMGGYSTTTDFIKSV 1150
I A IK GK T+D+GG + +DF + +
Sbjct: 327 IETACFATIKDGKSLTKDLGGNAKCSDFTEEI 358
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,781,959
Number of extensions: 862841
Number of successful extensions: 3054
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3044
Number of HSP's successfully gapped: 7
Length of query: 410
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 309
Effective length of database: 8,829,335
Effective search space: 2728264515
Effective search space used: 2728264515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013325
(1232 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_570954.1| isocitrate dehydrogenase 3, beta subunit [Mus m... 674 0.0
Alignment gi|NP_032349.1| isocitrate dehydrogenase [NAD] subunit gamma 1,... 329 3e-90
Alignment gi|NP_766489.1| probable isocitrate dehydrogenase [NAD] gamma 2... 321 6e-88
Alignment gi|NP_083849.1| isocitrate dehydrogenase [NAD] subunit alpha, m... 256 2e-68
>ref|NP_570954.1| isocitrate dehydrogenase 3, beta subunit [Mus musculus].
Length = 384
Score = 674 bits (1738), Expect = 0.0
Identities = 342/385 (88%), Positives = 352/385 (91%)
Frame = +2
Query: 23 MAALSGVRWLTRALVAAPNPGAWRSLXXXXXXXXXXXXXXEDVRVEGAFPVTMLPGDGVG 202
MAALS VRWLTRA++AA N GAWR L +DVRVEGAFPVTMLPGDGVG
Sbjct: 1 MAALSNVRWLTRAVLAARNSGAWRGLGTSTAHAASQSQA-QDVRVEGAFPVTMLPGDGVG 59
Query: 203 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 382
PELMHAVKEVFKAA+VPVEF+EHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKI+TPME
Sbjct: 60 PELMHAVKEVFKAAAVPVEFKEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIYTPME 119
Query: 383 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 562
YKGELASYDM+LRRKLDLFANVVHVKSLPGY TRHNNLDLVIIREQTEGEYSSLEHESA+
Sbjct: 120 YKGELASYDMQLRRKLDLFANVVHVKSLPGYKTRHNNLDLVIIREQTEGEYSSLEHESAK 179
Query: 563 GVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELY 742
GVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELY
Sbjct: 180 GVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELY 239
Query: 743 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXXXXXXXPGESYSAEY 922
PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN PGESYSAEY
Sbjct: 240 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY 299
Query: 923 AVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT 1102
AVFE GARHPFAQAVGRNIANPTAMLLSA+NMLRHLNLEYHS+MIADAVKKVIK GKVRT
Sbjct: 300 AVFETGARHPFAQAVGRNIANPTAMLLSATNMLRHLNLEYHSSMIADAVKKVIKAGKVRT 359
Query: 1103 RDMGGYSTTTDFIKSVIGHLHPHGG 1177
RDMGGYSTTTDFIKSVIGHLHPHGG
Sbjct: 360 RDMGGYSTTTDFIKSVIGHLHPHGG 384
>ref|NP_032349.1| isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial
precursor [Mus musculus].
Length = 393
Score = 329 bits (843), Expect = 3e-90
Identities = 171/334 (51%), Positives = 221/334 (66%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 340
G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A EE + + +++
Sbjct: 53 GRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADEEDIRNAIMAIRR 109
Query: 341 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 520
N+VA+ G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE
Sbjct: 110 NRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHKDIDILIVREN 169
Query: 521 TEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGD 700
TEGEYSSLEHES GV+E LKI+T+ KS RIA++AF A + GR KVTAVHKANIMKLGD
Sbjct: 170 TEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGD 229
Query: 701 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXX 880
GLFLQCC EVA YP+I F++MI+DN MQLV P QFDV+VMPNLYGNI++N
Sbjct: 230 GLFLQCCREVAAHYPQITFDSMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVG 289
Query: 881 XXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIA 1060
G +Y YAVFE R+ +NIANPTA LL++ ML HL L ++ I
Sbjct: 290 GPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIR 349
Query: 1061 DAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 1162
AV + + T D+GG TT+ I+ +I H+
Sbjct: 350 KAVLASMDNENMHTPDIGGQGTTSQAIQDIIRHI 383
>ref|NP_766489.1| probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial [Mus
musculus].
Length = 396
Score = 321 bits (823), Expect = 6e-88
Identities = 163/334 (48%), Positives = 224/334 (67%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 340
G V M+PGDG+GPELM VK++F++ VPV+F+E ++ N EE++ L +++
Sbjct: 50 GRHTVAMIPGDGIGPELMVHVKKIFRSNCVPVDFEEVWVTSTSN---EEEINNALMAIRR 106
Query: 341 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 520
N+VA+ G I T S++ + R LDL+A+VVH K+ PG MTRH ++D++++RE
Sbjct: 107 NRVALKGNIATNHNLPARYKSHNTKFRTILDLYASVVHFKTFPGVMTRHKDIDILVVREN 166
Query: 521 TEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGD 700
TEGEY++LEHES +GV+E LKIVT+TKS RIA +AF A K GR KVT VHKANIMKLGD
Sbjct: 167 TEGEYTNLEHESVKGVVESLKIVTKTKSVRIADYAFKLAQKMGRKKVTVVHKANIMKLGD 226
Query: 701 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXX 880
GLFLQCC++VA YP+I E+MIIDN MQLV P QFDV+VMPNLYGNII++
Sbjct: 227 GLFLQCCKDVAAHYPQITLESMIIDNTTMQLVSKPQQFDVMVMPNLYGNIINSICTGLVG 286
Query: 881 XXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIA 1060
PG +Y YA+FEMG++ RNIANP AMLL++ ML +L+L+ ++ I
Sbjct: 287 GSGIVPGANYGDSYAIFEMGSKEIGKDLAHRNIANPVAMLLTSCIMLDYLDLQPYATHIR 346
Query: 1061 DAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 1162
AV ++ V T D+GG T ++ ++ H+
Sbjct: 347 SAVMASLQNKAVCTPDIGGQGNTASTVEYILHHM 380
>ref|NP_083849.1| isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial precursor
[Mus musculus].
Length = 366
Score = 256 bits (655), Expect = 2e-68
Identities = 139/332 (41%), Positives = 204/332 (61%), Gaps = 2/332 (0%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLE-QVLSSMK 337
G VT++PGDG+GPE+ +V ++F AA P++++E +++ +Q + + + SM
Sbjct: 30 GVQTVTLIPGDGIGPEISASVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPPEAKESMD 89
Query: 338 ENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIRE 517
+NK+ + G + TP+ S ++ LR+ DL+ANV S+ GY T + ++++V IRE
Sbjct: 90 KNKMGLKGPLKTPIA--AGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRE 147
Query: 518 QTEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLG 697
TEGEYS +EH GV++ +K++T S+RIA+FAF+YA RS VTAVHKANIM++
Sbjct: 148 NTEGEYSGIEHVIVDGVVQSIKLITEEASKRIAEFAFEYARNNHRSNVTAVHKANIMRMS 207
Query: 698 DGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXX 877
DGLFLQ C EVAE IKF M +D C+ +VQ+P QFDVLVMPNLYG+I+ +
Sbjct: 208 DGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLI 267
Query: 878 XXXXXXPGESYSAE-YAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNM 1054
P + A A+FE G+++ANPTA+LLSA MLRH+ L H+
Sbjct: 268 GGLGVTPSGNIGANGVAIFE-SVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAAK 326
Query: 1055 IADAVKKVIKVGKVRTRDMGGYSTTTDFIKSV 1150
I A IK GK T+D+GG + +DF + +
Sbjct: 327 IEAACFATIKDGKSLTKDLGGNAKCSDFTEEI 358
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,523,546
Number of extensions: 1151014
Number of successful extensions: 4305
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4288
Number of HSP's successfully gapped: 4
Length of query: 410
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 306
Effective length of database: 12,493,815
Effective search space: 3823107390
Effective search space used: 3823107390
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013325
(1232 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008830.2| isocitrate dehydrogenase [NAD] subunit beta, mi... 681 0.0
Alignment gi|NP_777280.1| isocitrate dehydrogenase [NAD] subunit beta, mi... 661 0.0
Alignment gi|NP_777281.1| isocitrate dehydrogenase [NAD] subunit beta, mi... 374 e-104
Alignment gi|NP_004126.1| isocitrate dehydrogenase [NAD] subunit gamma, m... 332 6e-91
Alignment gi|NP_777358.1| isocitrate dehydrogenase [NAD] subunit gamma, m... 314 9e-86
Alignment gi|NP_005521.1| isocitrate dehydrogenase [NAD] subunit alpha, m... 258 8e-69
>ref|NP_008830.2| isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform a
precursor [Homo sapiens].
Length = 385
Score = 681 bits (1756), Expect = 0.0
Identities = 346/384 (90%), Positives = 350/384 (91%)
Frame = +2
Query: 23 MAALSGVRWLTRALVAAPNPGAWRSLXXXXXXXXXXXXXXEDVRVEGAFPVTMLPGDGVG 202
MAALSGVRWLTRALV+A NPGAWR L EDVRVEG+FPVTMLPGDGVG
Sbjct: 1 MAALSGVRWLTRALVSAGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVG 60
Query: 203 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 382
PELMHAVKEVFKAA+VPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME
Sbjct: 61 PELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 120
Query: 383 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 562
YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR
Sbjct: 121 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 180
Query: 563 GVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELY 742
GVIECLKIVTR KSQRIAKFAFDYATKKGR KVTAVHKANIMKLGDGLFLQCCEEVAELY
Sbjct: 181 GVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY 240
Query: 743 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXXXXXXXPGESYSAEY 922
PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN PGESYSAEY
Sbjct: 241 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY 300
Query: 923 AVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT 1102
AVFE GARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHS+MIADAVKKVIKVGKVRT
Sbjct: 301 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRT 360
Query: 1103 RDMGGYSTTTDFIKSVIGHLHPHG 1174
RDMGGYSTTTDFIKSVIGHL G
Sbjct: 361 RDMGGYSTTTDFIKSVIGHLQTKG 384
>ref|NP_777280.1| isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform b
precursor [Homo sapiens].
Length = 383
Score = 661 bits (1705), Expect = 0.0
Identities = 338/383 (88%), Positives = 345/383 (90%), Gaps = 1/383 (0%)
Frame = +2
Query: 23 MAALSGVRWLTRALVAAPNPGAWRSLXXXXXXXXXXXXXXEDVRVEGAFPVTMLPGDGVG 202
MAALSGVRWLTRALV+A NPGAWR L EDVRVEG+FPVTMLPGDGVG
Sbjct: 1 MAALSGVRWLTRALVSAGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVG 60
Query: 203 PELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 382
PELMHAVKEVFKAA+VPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME
Sbjct: 61 PELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 120
Query: 383 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 562
YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR
Sbjct: 121 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 180
Query: 563 GVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELY 742
GVIECLKIVTR KSQRIAKFAFDYATKKGR KVTAVHKANIMKLGDGLFLQCCEEVAELY
Sbjct: 181 GVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY 240
Query: 743 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXXXXXXXPGESYSAEY 922
PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN PGESYSAEY
Sbjct: 241 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY 300
Query: 923 AVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRT 1102
AVFE GARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHS+MIADAVKKVIKVGKVRT
Sbjct: 301 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRT 360
Query: 1103 RDMGGYSTTTDFIKSVIGHL-HP 1168
DMGGY+T DF ++VI L HP
Sbjct: 361 SDMGGYATCHDFTEAVIAALPHP 383
>ref|NP_777281.1| isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform c
[Homo sapiens].
Length = 233
Score = 374 bits (961), Expect = e-104
Identities = 188/208 (90%), Positives = 190/208 (91%)
Frame = +2
Query: 551 ESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEV 730
+SARGVIECLKIVTR KSQRIAKFAFDYATKKGR KVTAVHKANIMKLGDGLFLQCCEEV
Sbjct: 25 QSARGVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEV 84
Query: 731 AELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXXXXXXXPGESY 910
AELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDN PGESY
Sbjct: 85 AELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESY 144
Query: 911 SAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVG 1090
SAEYAVFE GARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHS+MIADAVKKVIKVG
Sbjct: 145 SAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVG 204
Query: 1091 KVRTRDMGGYSTTTDFIKSVIGHLHPHG 1174
KVRTRDMGGYSTTTDFIKSVIGHL G
Sbjct: 205 KVRTRDMGGYSTTTDFIKSVIGHLQTKG 232
>ref|NP_004126.1| isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform a
precursor [Homo sapiens].
Length = 393
Score = 332 bits (850), Expect = 6e-91
Identities = 174/339 (51%), Positives = 222/339 (65%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 340
G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A EE + + +++
Sbjct: 53 GRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADEEDIRNAIMAIRR 109
Query: 341 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 520
N+VA+ G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE
Sbjct: 110 NRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHKDIDILIVREN 169
Query: 521 TEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGD 700
TEGEYSSLEHES GV+E LKI+T+ KS RIA++AF A + GR KVTAVHKANIMKLGD
Sbjct: 170 TEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGD 229
Query: 701 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXX 880
GLFLQCC EVA YP+I FE MI+DN MQLV P QFDV+VMPNLYGNI++N
Sbjct: 230 GLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVG 289
Query: 881 XXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIA 1060
G +Y YAVFE R+ +NIANPTA LL++ ML HL L ++ I
Sbjct: 290 GPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIR 349
Query: 1061 DAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHLHPHGG 1177
AV + + T D+GG TT++ I+ VI H+ G
Sbjct: 350 KAVLASMDNENMHTPDIGGQGTTSEAIQDVIRHIRVING 388
>ref|NP_777358.1| isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform b
precursor [Homo sapiens].
Length = 380
Score = 314 bits (805), Expect = 9e-86
Identities = 163/303 (53%), Positives = 204/303 (67%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 340
G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A EE + + +++
Sbjct: 53 GRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADEEDIRNAIMAIRR 109
Query: 341 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 520
N+VA+ G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE
Sbjct: 110 NRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHKDIDILIVREN 169
Query: 521 TEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGD 700
TEGEYSSLEHES GV+E LKI+T+ KS RIA++AF A + GR KVTAVHKANIMKLGD
Sbjct: 170 TEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGD 229
Query: 701 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXXX 880
GLFLQCC EVA YP+I FE MI+DN MQLV P QFDV+VMPNLYGNI++N
Sbjct: 230 GLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVG 289
Query: 881 XXXXXPGESYSAEYAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIA 1060
G +Y YAVFE R+ +NIANPTA LL++ ML HL L ++ I
Sbjct: 290 GPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIR 349
Query: 1061 DAV 1069
AV
Sbjct: 350 KAV 352
>ref|NP_005521.1| isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial precursor
[Homo sapiens].
Length = 366
Score = 258 bits (659), Expect = 8e-69
Identities = 140/332 (42%), Positives = 204/332 (61%), Gaps = 2/332 (0%)
Frame = +2
Query: 161 GAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASEEKL-EQVLSSMK 337
G VT++PGDG+GPE+ AV ++F AA P++++E +++ +Q + + + SM
Sbjct: 30 GVQTVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPSEAKESMD 89
Query: 338 ENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIRE 517
+NK+ + G + TP+ S ++ LR+ DL+ANV S+ GY T + ++++V IRE
Sbjct: 90 KNKMGLKGPLKTPIA--AGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRE 147
Query: 518 QTEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLG 697
TEGEYS +EH GV++ +K++T S+RIA+FAF+YA RS VTAVHKANIM++
Sbjct: 148 NTEGEYSGIEHVIVDGVVQSIKLITEGASKRIAEFAFEYARNNHRSNVTAVHKANIMRMS 207
Query: 698 DGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNXXXXXX 877
DGLFLQ C EVAE IKF M +D C+ +VQ+P QFDVLVMPNLYG+I+ +
Sbjct: 208 DGLFLQKCREVAESCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLI 267
Query: 878 XXXXXXPGESYSAE-YAVFEMGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNM 1054
P + A A+FE G+++ANPTA+LLSA MLRH+ L H+
Sbjct: 268 GGLGVTPSGNIGANGVAIFE-SVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAAR 326
Query: 1055 IADAVKKVIKVGKVRTRDMGGYSTTTDFIKSV 1150
I A IK GK T+D+GG + +DF + +
Sbjct: 327 IEAACFATIKDGKSLTKDLGGNAKCSDFTEEI 358
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,991,529
Number of extensions: 1368724
Number of successful extensions: 4895
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4887
Number of HSP's successfully gapped: 6
Length of query: 410
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,835,944
Effective search space: 4524962920
Effective search space used: 4524962920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013325
(1232 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894920.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 299 2e-78
Sscrofa_Chr17 272 4e-70
>gb|GL894920.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3537
Length = 24837
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 788 cagctggtgcagaatccttaccaatttgatgtgctggtgatgcccaatctctacgggaac 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17809 cagctggtgcagaatccttaccaatttgatgtgctggtgatgcccaatctctacgggaac 17868
Query: 848 attattgacaatctggctgccggcctggtcgggggagctggtgtggttcctggtgagagc 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17869 attattgacaatctggctgccggcctggtcgggggagctggtgtggttcctggtgagagc 17928
Query: 908 tacagcgccgagtatgcagtgtttgagatgg 938
|||||||||||||||||||||||||||||||
Sbjct: 17929 tacagcgccgagtatgcagtgtttgagatgg 17959
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 552 agagtgcgaggggcgtgatcgagtgcttgaagattgtcactcgaaccaaatctcagcgga 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17392 agagtgcgaggggcgtgatcgagtgcttgaagattgtcactcgaaccaaatctcagcgga 17451
Query: 612 ttgcaaagttcgcctttgactatgccactaagaaggggcggagcaaggtcacagctgtcc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17452 ttgcaaagttcgcctttgactatgccactaagaaggggcggagcaaggtcacagctgtcc 17511
Query: 672 acaaggccaatataatg 688
|||||||||||||||||
Sbjct: 17512 acaaggccaatataatg 17528
Score = 268 bits (135), Expect = 7e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 419 aggcgtaagttggacttgtttgccaatgtcgtccatgtgaagtctcttcctgggtacatg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17152 aggcgtaagttggacttgtttgccaatgtcgtccatgtgaagtctcttcctgggtacatg 17211
Query: 479 actcgacacaacaatctagatttggtgatcattcgagagcagacagaaggggagtacagc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17212 actcgacacaacaatctagatttggtgatcattcgagagcagacagaaggggagtacagc 17271
Query: 539 tctctggaacacgag 553
|||||||||||||||
Sbjct: 17272 tctctggaacacgag 17286
Score = 248 bits (125), Expect = 6e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 236 aaggcggcctctgtcccggtggagttccaggaacatcacctgagcgaggtgcagaatatg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15096 aaggcggcctctgtcccggtggagttccaggaacatcacctgagcgaggtgcagaatatg 15155
Query: 296 gcatccgaggagaagctggagcaggtgctgagttcgatgaaggagaacaaagtggccata 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15156 gcatccgaggagaagctggagcaggtgctgagttcgatgaaggagaacaaagtggccata 15215
Query: 356 attgg 360
|||||
Sbjct: 15216 attgg 15220
Score = 212 bits (107), Expect = 3e-52
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 1122 gtaccacaaccgacttcatcaagtctgtcatcggccacctgcacccccatgggggctaga 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19189 gtaccacaaccgacttcatcaagtctgtcatcggccacctgcacccccatgggggctaga 19248
Query: 1182 gccctttattcccaccaacctcacaaggaccatacacatcccttcagtgca 1232
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 19249 gccctttattccctccaacctcacaaggaccatacacatcccttcagtgca 19299
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 688 gaaactgggggatgggttgttcctgcagtgctgcgaggaagttgctgaactgtaccccaa 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17618 gaaactgggggatgggttgttcctgcagtgctgcgaggaagttgctgaactgtaccccaa 17677
Query: 748 gatcaagtttgagacaatgatcatagacaactgctgcatgcag 790
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17678 gatcaagtttgagacaatgatcatagacaactgctgcatgcag 17720
Score = 182 bits (92), Expect = 3e-43
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 937 gggcgcccggcatccatttgcccaggcagtgggcagaaatatagccaaccccacagcaat 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 18184 gggcgcccggcatccatttgcccaggcagtgggcagaaatatagccaaccccacagccat 18243
Query: 997 gctgctgtcagcttccaacatgctacggcatctcaa 1032
||||||||||||||||||||||||||||||||||||
Sbjct: 18244 gctgctgtcagcttccaacatgctacggcatctcaa 18279
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1033 tctcgagtatcactccaacatgattgcagatgctgtgaagaaggtgatcaaagtgggcaa 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18388 tctcgagtatcactccaacatgattgcagatgctgtgaagaaggtgatcaaagtgggcaa 18447
Query: 1093 ggtg 1096
||||
Sbjct: 18448 ggtg 18451
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 359 ggaaagatccacactccgatggagtataagggggaactagcctcctacgatatgcggctg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17015 ggaaagatccacactccgatggagtataagggggaactagcctcctacgatatgcggctg 17074
Query: 419 agg 421
|||
Sbjct: 17075 agg 17077
Score = 109 bits (55), Expect = 4e-21
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 cccgcgacttcctgcggcgaacatggcggccctcagcggcgtccgctggctgacccgag 59
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14572 cccgcgacttcctacggcgaacatggcggccctcagcggcgtccgctggctgacccgag 14630
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 99 tgagtacctcggtcgtggcgcaagccgcctcccggagccagg 140
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14635 tgagtacctcggtcgtggcgcaagccgcctcccggagccagg 14676
>Sscrofa_Chr17
|| Length = 69701581
Score = 272 bits (137), Expect = 4e-70
Identities = 140/141 (99%)
Strand = Plus / Minus
Query: 1092 aggtgcggactcgagacatgggcggctacagtaccacaaccgacttcatcaagtctgtca 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37446754 aggtgcggactcgagacatgggcggctacagtaccacaaccgacttcatcaagtctgtca 37446695
Query: 1152 tcggccacctgcacccccatgggggctagagccctttattcccaccaacctcacaaggac 1211
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 37446694 tcggccacctgcacccccatgggggctagagccctttattccctccaacctcacaaggac 37446635
Query: 1212 catacacatcccttcagtgca 1232
|||||||||||||||||||||
Sbjct: 37446634 catacacatcccttcagtgca 37446614
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 552 agagtgcgaggggcgtgatcgagtgcttgaagattgtcactcgaaccaaatctcagcgga 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37448447 agagtgcgaggggcgtgatcgagtgcttgaagattgtcactcgaaccaaatctcagcgga 37448388
Query: 612 ttgcaaagttcgcctttgactatgccactaagaaggggcggagcaaggtcacagctgtcc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37448387 ttgcaaagttcgcctttgactatgccactaagaaggggcggagcaaggtcacagctgtcc 37448328
Query: 672 acaaggccaatataatg 688
|||||||||||||||||
Sbjct: 37448327 acaaggccaatataatg 37448311
Score = 268 bits (135), Expect = 7e-69
Identities = 149/151 (98%), Gaps = 2/151 (1%)
Strand = Plus / Minus
Query: 788 cagctggtgcagaatccttaccaatttgatgtgctggtgatgcccaatctctacgggaac 847
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 37448030 cagctggtgcagaatccttaccaatttgatgtgctggtgatgccca-tctctacgggaac 37447972
Query: 848 attattgacaatctggctgccggcctggtcgggggagctggtgtggttcctggtgagagc 907
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37447971 attattgacaatctg-ctgccggcctggtcgggggagctggtgtggttcctggtgagagc 37447913
Query: 908 tacagcgccgagtatgcagtgtttgagatgg 938
|||||||||||||||||||||||||||||||
Sbjct: 37447912 tacagcgccgagtatgcagtgtttgagatgg 37447882
Score = 268 bits (135), Expect = 7e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 419 aggcgtaagttggacttgtttgccaatgtcgtccatgtgaagtctcttcctgggtacatg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37448687 aggcgtaagttggacttgtttgccaatgtcgtccatgtgaagtctcttcctgggtacatg 37448628
Query: 479 actcgacacaacaatctagatttggtgatcattcgagagcagacagaaggggagtacagc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37448627 actcgacacaacaatctagatttggtgatcattcgagagcagacagaaggggagtacagc 37448568
Query: 539 tctctggaacacgag 553
|||||||||||||||
Sbjct: 37448567 tctctggaacacgag 37448553
Score = 248 bits (125), Expect = 6e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 236 aaggcggcctctgtcccggtggagttccaggaacatcacctgagcgaggtgcagaatatg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37450743 aaggcggcctctgtcccggtggagttccaggaacatcacctgagcgaggtgcagaatatg 37450684
Query: 296 gcatccgaggagaagctggagcaggtgctgagttcgatgaaggagaacaaagtggccata 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37450683 gcatccgaggagaagctggagcaggtgctgagttcgatgaaggagaacaaagtggccata 37450624
Query: 356 attgg 360
|||||
Sbjct: 37450623 attgg 37450619
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 688 gaaactgggggatgggttgttcctgcagtgctgcgaggaagttgctgaactgtaccccaa 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37448221 gaaactgggggatgggttgttcctgcagtgctgcgaggaagttgctgaactgtaccccaa 37448162
Query: 748 gatcaagtttgagacaatgatcatagacaactgctgcatgcag 790
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37448161 gatcaagtttgagacaatgatcatagacaactgctgcatgcag 37448119
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 137 caggccgaggacgtgagagtggaaggcgcctttcccgtgactatgttgccaggagacggc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37450941 caggccgaggacgtgagagtggaaggcgcctttcccgtgactatgttgccaggagacggc 37450882
Query: 197 gtggggcctgagctgatgcacgctgtcaaggaggttttcaagg 239
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37450881 gtggggcctgagctgatgcacgctgtcaaggaggttttcaagg 37450839
Score = 182 bits (92), Expect = 3e-43
Identities = 95/96 (98%)
Strand = Plus / Minus
Query: 937 gggcgcccggcatccatttgcccaggcagtgggcagaaatatagccaaccccacagcaat 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 37447657 gggcgcccggcatccatttgcccaggcagtgggcagaaatatagccaaccccacagccat 37447598
Query: 997 gctgctgtcagcttccaacatgctacggcatctcaa 1032
||||||||||||||||||||||||||||||||||||
Sbjct: 37447597 gctgctgtcagcttccaacatgctacggcatctcaa 37447562
Score = 155 bits (78), Expect = 7e-35
Identities = 81/82 (98%)
Strand = Plus / Minus
Query: 59 gcgctggtcgccgccccgaaccccggagcatggaggagcctgagtacctcggtcgtggcg 118
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37451139 gcgctggtcgccgccgcgaaccccggagcatggaggagcctgagtacctcggtcgtggcg 37451080
Query: 119 caagccgcctcccggagccagg 140
||||||||||||||||||||||
Sbjct: 37451079 caagccgcctcccggagccagg 37451058
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 1033 tctcgagtatcactccaacatgattgcagatgctgtgaagaaggtgatcaaagtgggcaa 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37447453 tctcgagtatcactccaacatgattgcagatgctgtgaagaaggtgatcaaagtgggcaa 37447394
Query: 1093 ggtg 1096
||||
Sbjct: 37447393 ggtg 37447390
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 359 ggaaagatccacactccgatggagtataagggggaactagcctcctacgatatgcggctg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37448824 ggaaagatccacactccgatggagtataagggggaactagcctcctacgatatgcggctg 37448765
Query: 419 agg 421
|||
Sbjct: 37448764 agg 37448762
Score = 109 bits (55), Expect = 4e-21
Identities = 58/59 (98%)
Strand = Plus / Minus
Query: 1 cccgcgacttcctgcggcgaacatggcggccctcagcggcgtccgctggctgacccgag 59
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37451314 cccgcgacttcctacggcgaacatggcggccctcagcggcgtccgctggctgacccgag 37451256
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,230,433
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 23
Length of query: 1232
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1211
Effective length of database: 2,808,413,156
Effective search space: 3400988331916
Effective search space used: 3400988331916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)