Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013331
(1275 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850071.1| PREDICTED: similar to four and a half LIM domai... 629 e-180
Alignment gi|XP_531773.2| PREDICTED: similar to four and a half LIM domai... 383 e-106
Alignment gi|XP_532237.2| PREDICTED: similar to activator of cAMP-respons... 345 7e-95
Alignment gi|XP_866308.1| PREDICTED: similar to four and a half LIM domai... 302 5e-82
Alignment gi|XP_866275.1| PREDICTED: similar to four and a half LIM domai... 300 2e-81
Alignment gi|XP_549282.2| PREDICTED: similar to Four and a half LIM domai... 264 1e-70
Alignment gi|XP_866260.1| PREDICTED: similar to Four and a half LIM domai... 189 6e-48
Alignment gi|XP_866244.1| PREDICTED: similar to four and a half LIM domai... 183 3e-46
Alignment gi|XP_861793.1| PREDICTED: similar to Enigma homolog (Enigma-li... 122 7e-28
Alignment gi|XP_861766.1| PREDICTED: similar to PDZ and LIM domain 5 isof... 122 7e-28
>ref|XP_850071.1| PREDICTED: similar to four and a half LIM domains 3 [Canis
familiaris].
Length = 309
Score = 629 bits (1621), Expect = e-180
Identities = 277/284 (97%), Positives = 282/284 (99%)
Frame = +3
Query: 189 EGSITATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRE 368
+GS+TATMSE FDCAKCSESLYGRKYIQTD+GPYCVPCYD+TFANTCAECQQLIGHDSRE
Sbjct: 23 QGSLTATMSEAFDCAKCSESLYGRKYIQTDDGPYCVPCYDSTFANTCAECQQLIGHDSRE 82
Query: 369 LFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSR 548
LFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSR
Sbjct: 83 LFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSR 142
Query: 549 KLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGG 728
KLEYGGQTWHEHCFLCSGCEQPLGS SFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGG
Sbjct: 143 KLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGG 202
Query: 729 VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGG 908
VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGG
Sbjct: 203 VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGG 262
Query: 909 GKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
GKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQV+CQGCSQ
Sbjct: 263 GKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVVCQGCSQ 306
>ref|XP_531773.2| PREDICTED: similar to four and a half LIM domains 2 isoform 1 [Canis
familiaris].
Length = 424
Score = 383 bits (983), Expect = e-106
Identities = 164/333 (49%), Positives = 224/333 (67%)
Frame = +3
Query: 42 HSPCAAGSLAGSSLGPARPGPQVGAAEGRGPGCXXXXXXXXXXXXXXXFEGSITATMSET 221
HSP + + GS PA GAA RGP EG TM+E
Sbjct: 93 HSPDSLLTRGGS--WPAAAHTVAGAAHERGPCLPTGPWARRGQTTGQVAEGP-GVTMTER 149
Query: 222 FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEG 401
FDC C +SL+G+KYI + PYCV C++ +A+TC EC + IG D ++L Y+DRH+HE
Sbjct: 150 FDCHHCEKSLFGKKYILREESPYCVACFEALYASTCEECGKPIGCDCKDLSYKDRHWHEA 209
Query: 402 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHE 581
CF C RC+ SL D+PF ++ +LLC DCY +SS+C C +T+MPG+RK+EY +WHE
Sbjct: 210 CFHCSRCKSSLVDKPFAAKEDQLLCTDCYSHEYSSKCQECKKTIMPGTRKMEYKDSSWHE 269
Query: 582 HCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRE 761
CF C C+QP+G+ SF+P ++CVPCYE ++A +C +C K +T GGVTYR+QPWHRE
Sbjct: 270 TCFTCHRCQQPIGTKSFIPKDNQNFCVPCYEKQYALQCVQCKKPITTGGVTYREQPWHRE 329
Query: 762 CLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRHW 941
C VCT C+ PL+GQ+FTSRD+ YC++CF +L+A KC+ C PI+GLGG KY+SFE+R W
Sbjct: 330 CFVCTACKKPLSGQRFTSRDEFAYCLSCFCDLYAKKCAGCTNPISGLGGTKYISFEERQW 389
Query: 942 HHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
H+ CF+C +CS SLVG+GF+ + D +LC C +
Sbjct: 390 HNDCFNCKKCSLSLVGRGFLTERDDILCPDCGK 422
>ref|XP_532237.2| PREDICTED: similar to activator of cAMP-responsive element modulator
(CREM) in testis [Canis familiaris].
Length = 284
Score = 345 bits (884), Expect = 7e-95
Identities = 132/271 (48%), Positives = 190/271 (70%)
Frame = +3
Query: 222 FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEG 401
FDC C+ SL G+KY+ ++ PYCV CYD F+N C EC++ I DS++L Y+ RH+HEG
Sbjct: 6 FDCQYCTASLLGKKYVLKNDNPYCVSCYDRIFSNYCEECKEPIESDSKDLCYKGRHWHEG 65
Query: 402 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHE 581
CF C +C SL ++PF +D LLC++CY + SS+C C +T+MPGSRK+E+ G WHE
Sbjct: 66 CFNCAKCNHSLVEKPFAAKDERLLCSECYSNECSSKCFHCKKTIMPGSRKMEFKGNYWHE 125
Query: 582 HCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRE 761
CF+C C QP+G+ + +YCVPC+E +FA C+ C K +T GG+T+ DQPWH+E
Sbjct: 126 TCFVCEHCRQPIGTKPLISKDNGNYCVPCFEKEFAHYCSFCKKVITSGGITFHDQPWHKE 185
Query: 762 CLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRHW 941
C +C+GC+ L ++F SRDD P+C+ C+ L+A KC++C +PITGL G K++ F+DR W
Sbjct: 186 CFLCSGCRKELCEEEFMSRDDYPFCLDCYNHLYAKKCAACNKPITGLRGAKFICFQDRQW 245
Query: 942 HHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
H CF+C +CS SLVG+GF+ ++ C+ C
Sbjct: 246 HSECFNCGKCSVSLVGEGFLTQNKEIFCRKC 276
Score = 72.4 bits (176), Expect = 9e-13
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIG--HDSRELFYEDRH 389
E F C+ C + L +++ D+ P+C+ CY++ +A CA C + I ++ + ++DR
Sbjct: 185 ECFLCSGCRKELCEEEFMSRDDYPFCLDCYNHLYAKKCAACNKPITGLRGAKFICFQDRQ 244
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDC 485
+H CF C +C SL E F Q+ E+ C C
Sbjct: 245 WHSECFNCGKCSVSLVGEGFLTQNKEIFCRKC 276
>ref|XP_866308.1| PREDICTED: similar to four and a half LIM domains 1 isoform 6 [Canis
familiaris].
Length = 296
Score = 302 bits (773), Expect = 5e-82
Identities = 127/279 (45%), Positives = 178/279 (63%), Gaps = 1/279 (0%)
Frame = +3
Query: 207 TMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDR 386
TM+E FDC C +SL G+KY+Q D C+ C+D ANTC EC++ IG DS+E+ Y++R
Sbjct: 16 TMTEKFDCHYCRDSLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNR 75
Query: 387 HFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGG 566
++H+ CFRC +C LA+E F +D+++LCN C S +C C + ++ G + +EY
Sbjct: 76 YWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKK 135
Query: 567 QTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQ 746
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K +T GG+TY+DQ
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQ 195
Query: 747 PWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLG-GGKYVS 923
PWH EC VC C LAGQ+FT+ +D YCV C+ A KC+ CK PITG G G V+
Sbjct: 196 PWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVA 255
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
+E + WH CF C +CS +L + FV +QV C C++
Sbjct: 256 YEGQSWHDYCFHCKKCSMNLANKRFVFHEEQVYCPDCAK 294
Score = 103 bits (256), Expect = 5e-22
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Frame = +3
Query: 201 TATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYE 380
T + F C+ C + + + YCV C++ FA C +C + I S + Y+
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAI--TSGGITYQ 193
Query: 381 DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM---PGSRK 551
D+ +H CF C C + LA + FT + + C DCY + + +C+ C + GS
Sbjct: 194 DQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSV 253
Query: 552 LEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPC 668
+ Y GQ+WH++CF C C L + FV + YC C
Sbjct: 254 VAYEGQSWHDYCFHCKKCSMNLANKRFVFHEEQVYCPDC 292
>ref|XP_866275.1| PREDICTED: similar to four and a half LIM domains 1 isoform 5 [Canis
familiaris].
Length = 280
Score = 300 bits (768), Expect = 2e-81
Identities = 126/278 (45%), Positives = 177/278 (63%), Gaps = 1/278 (0%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
M+E FDC C +SL G+KY+Q D C+ C+D ANTC EC++ IG DS+E+ Y++R+
Sbjct: 1 MTEKFDCHYCRDSLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRY 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+H+ CFRC +C LA+E F +D+++LCN C S +C C + ++ G + +EY
Sbjct: 61 WHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKKT 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K +T GG+TY+DQP
Sbjct: 121 VWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLG-GGKYVSF 926
WH EC VC C LAGQ+FT+ +D YCV C+ A KC+ CK PITG G G V++
Sbjct: 181 WHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVAY 240
Query: 927 EDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
E + WH CF C +CS +L + FV +QV C C++
Sbjct: 241 EGQSWHDYCFHCKKCSMNLANKRFVFHEEQVYCPDCAK 278
Score = 103 bits (256), Expect = 5e-22
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Frame = +3
Query: 201 TATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYE 380
T + F C+ C + + + YCV C++ FA C +C + I S + Y+
Sbjct: 120 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAI--TSGGITYQ 177
Query: 381 DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM---PGSRK 551
D+ +H CF C C + LA + FT + + C DCY + + +C+ C + GS
Sbjct: 178 DQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSV 237
Query: 552 LEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPC 668
+ Y GQ+WH++CF C C L + FV + YC C
Sbjct: 238 VAYEGQSWHDYCFHCKKCSMNLANKRFVFHEEQVYCPDC 276
>ref|XP_549282.2| PREDICTED: similar to Four and a half LIM domains protein 1 (FHL-1)
(Skeletal muscle LIM-protein 1) (SLIM 1) (SLIM) isoform
1 [Canis familiaris].
Length = 339
Score = 264 bits (675), Expect = 1e-70
Identities = 109/231 (47%), Positives = 151/231 (65%)
Frame = +3
Query: 207 TMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDR 386
TM+E FDC C +SL G+KY+Q D C+ C+D ANTC EC++ IG DS+E+ Y++R
Sbjct: 16 TMTEKFDCHYCRDSLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNR 75
Query: 387 HFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGG 566
++H+ CFRC +C LA+E F +D+++LCN C S +C C + ++ G + +EY
Sbjct: 76 YWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKK 135
Query: 567 QTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQ 746
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K +T GG+TY+DQ
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQ 195
Query: 747 PWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITG 899
PWH EC VC C LAGQ+FT+ +D YCV C+ A KC+ CK PITG
Sbjct: 196 PWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITG 246
Score = 140 bits (354), Expect = 2e-33
Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 2/212 (0%)
Frame = +3
Query: 405 FRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHEH 584
F C C+ SL + + +D C C+ ++ C C + + S+++ Y + WH+
Sbjct: 21 FDCHYCRDSLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYWHDT 80
Query: 585 CFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQG--GVTYRDQPWHR 758
CF C+ C PL + +FV C C + +P+C C K + G V Y+ WH+
Sbjct: 81 CFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKKTVWHK 140
Query: 759 ECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRH 938
+C C+ C+ + F + +D YCV C FA C C + IT G ++++D+
Sbjct: 141 DCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGG----ITYQDQP 196
Query: 939 WHHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
WH CF C CS L GQ F DQ C C
Sbjct: 197 WHAECFVCVTCSKKLAGQRFTAVEDQYYCVDC 228
Score = 97.4 bits (241), Expect = 3e-20
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Frame = +3
Query: 588 FLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGG--VTYRDQPWHRE 761
F C C L +V G H C+ C++ A C C K + V Y+++ WH
Sbjct: 21 FDCHYCRDSLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYWHDT 80
Query: 762 CLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRHW 941
C C C PLA + F ++D+ C C +PKC C +PI + G + V ++ W
Sbjct: 81 CFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKPI--VAGDQNVEYKKTVW 138
Query: 942 HHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
H CF+C+ C + F P G+ C C +
Sbjct: 139 HKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHE 171
Score = 72.4 bits (176), Expect = 9e-13
Identities = 31/107 (28%), Positives = 52/107 (48%)
Frame = +3
Query: 201 TATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYE 380
T + F C+ C + + + YCV C++ FA C +C + I S + Y+
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAI--TSGGITYQ 193
Query: 381 DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSAC 521
D+ +H CF C C + LA + FT + + C DCY + + +C+ C
Sbjct: 194 DQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGC 240
>ref|XP_866260.1| PREDICTED: similar to Four and a half LIM domains protein 1 (FHL-1)
(Skeletal muscle LIM-protein 1) (SLIM 1) (SLIM) (KyoT)
(RBP associated molecule 14-1) (RAM14-1) isoform 4 [Canis
familiaris].
Length = 177
Score = 189 bits (479), Expect = 6e-48
Identities = 79/168 (47%), Positives = 105/168 (62%), Gaps = 1/168 (0%)
Frame = +3
Query: 540 GSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLT 719
G + +EY WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K +T
Sbjct: 8 GDQNVEYKKTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAIT 67
Query: 720 QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITG 899
GG+TY+DQPWH EC VC C LAGQ+FT+ +D YCV C+ A KC+ CK PITG
Sbjct: 68 SGGITYQDQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITG 127
Query: 900 LG-GGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
G G V++E + WH CF C +CS +L + FV +QV C C++
Sbjct: 128 FGKGSSVVAYEGQSWHDYCFHCKKCSMNLANKRFVFHEEQVYCPDCAK 175
Score = 108 bits (271), Expect = 8e-24
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 5/166 (3%)
Frame = +3
Query: 375 YEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKL 554
Y+ +H+ CF C C++ + F + + C C+ + F+ C C + + G +
Sbjct: 14 YKKTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGG--I 71
Query: 555 EYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGG-- 728
Y Q WH CF+C C + L F + +YCV CY+N A +CA C +T G
Sbjct: 72 TYQDQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKG 131
Query: 729 ---VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGEL 857
V Y Q WH C C C LA ++F ++ YC C +L
Sbjct: 132 SSVVAYEGQSWHDYCFHCKKCSMNLANKRFVFHEEQVYCPDCAKKL 177
Score = 103 bits (256), Expect = 5e-22
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Frame = +3
Query: 201 TATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYE 380
T + F C+ C + + + YCV C++ FA C +C + I S + Y+
Sbjct: 17 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAI--TSGGITYQ 74
Query: 381 DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM---PGSRK 551
D+ +H CF C C + LA + FT + + C DCY + + +C+ C + GS
Sbjct: 75 DQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSV 134
Query: 552 LEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPC 668
+ Y GQ+WH++CF C C L + FV + YC C
Sbjct: 135 VAYEGQSWHDYCFHCKKCSMNLANKRFVFHEEQVYCPDC 173
>ref|XP_866244.1| PREDICTED: similar to four and a half LIM domains 1 isoform 3
[Canis familiaris].
Length = 210
Score = 183 bits (464), Expect = 3e-46
Identities = 78/183 (42%), Positives = 115/183 (62%), Gaps = 2/183 (1%)
Frame = +3
Query: 207 TMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDR 386
TM+E FDC C +SL G+KY+Q D C+ C+D ANTC EC++ IG DS+E+ Y++R
Sbjct: 16 TMTEKFDCHYCRDSLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNR 75
Query: 387 HFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGG 566
++H+ CFRC +C LA+E F +D+++LCN C S +C C + ++ G + +EY
Sbjct: 76 YWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKK 135
Query: 567 QTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTY--R 740
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K L + V + +
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKGLVKAPVWWPMK 195
Query: 741 DQP 749
D P
Sbjct: 196 DNP 198
Score = 103 bits (258), Expect = 3e-22
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Frame = +3
Query: 405 FRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHEH 584
F C C+ SL + + +D C C+ ++ C C + + S+++ Y + WH+
Sbjct: 21 FDCHYCRDSLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYWHDT 80
Query: 585 CFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQG--GVTYRDQPWHR 758
CF C+ C PL + +FV C C + +P+C C K + G V Y+ WH+
Sbjct: 81 CFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKKTVWHK 140
Query: 759 ECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKR 887
+C C+ C+ + F + +D YCV C FA C C +
Sbjct: 141 DCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNK 183
Score = 97.4 bits (241), Expect = 3e-20
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Frame = +3
Query: 588 FLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGG--VTYRDQPWHRE 761
F C C L +V G H C+ C++ A C C K + V Y+++ WH
Sbjct: 21 FDCHYCRDSLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYWHDT 80
Query: 762 CLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRHW 941
C C C PLA + F ++D+ C C +PKC C +PI + G + V ++ W
Sbjct: 81 CFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKPI--VAGDQNVEYKKTVW 138
Query: 942 HHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
H CF+C+ C + F P G+ C C +
Sbjct: 139 HKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHE 171
>ref|XP_861793.1| PREDICTED: similar to Enigma homolog (Enigma-like PDZ and LIM domains
protein) isoform 13 [Canis familiaris].
Length = 596
Score = 122 bits (306), Expect = 7e-28
Identities = 57/155 (36%), Positives = 75/155 (48%)
Frame = +3
Query: 564 GQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRD 743
G++WH F CS C+ + FV +KGA YC CYE FAP C RC + + +
Sbjct: 436 GKSWHPEEFNCSHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINALK 495
Query: 744 QPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVS 923
Q WH C VC C P+ F D +PYC + LF C C+ PI G ++
Sbjct: 496 QTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICHGCEFPIE--AGDMFLE 553
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQ 1028
WH +CF C+ C SL GQ F D+ LC+
Sbjct: 554 ALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLCK 588
Score = 88.2 bits (217), Expect = 2e-17
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 2/172 (1%)
Frame = +3
Query: 327 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSS 506
CA C Q+I L + +H F C C+ ++A F + L C CY F+
Sbjct: 420 CAHCNQVIRGPF--LVALGKSWHPEEFNCSHCKNTMAYIGFVEEKGALYCELCYEKFFAP 477
Query: 507 QCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFA 686
+C C ++ + QTWH CF+C C +P+ + F + G YC Y F
Sbjct: 478 ECGRCQRKIL--GEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFG 535
Query: 687 PRCARCSKTLTQGGVTYR--DQPWHRECLVCTGCQTPLAGQQFTSRDDDPYC 836
C C + G + WH C VC+ C L GQ F S+ D P C
Sbjct: 536 TICHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLC 587
Score = 86.3 bits (212), Expect = 6e-17
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQ-LIGHDSRELFYEDRHF 392
E F+C+ C ++ +++ YC CY+ FA C CQ+ ++G L + +
Sbjct: 442 EEFNCSHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINAL---KQTW 498
Query: 393 HEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQT 572
H CF C C + + + F +D E C Y + F + C C + G LE G T
Sbjct: 499 HVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICHGCEFPIEAGDMFLEALGYT 558
Query: 573 WHEHCFLCSGCEQPLGSCSFVPDKGAHYC 659
WH+ CF+CS C + L +F K C
Sbjct: 559 WHDTCFVCSVCCESLEGQTFFSKKDKPLC 587
Score = 66.6 bits (161), Expect = 5e-11
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Frame = +3
Query: 678 KFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGEL 857
K P CA C++ + + + WH E C+ C+ +A F YC C+ +
Sbjct: 415 KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCSHCKNTMAYIGFVEEKGALYCELCYEKF 474
Query: 858 FAPKCSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGF-VPDGDQ------ 1016
FAP+C C+R I G+ ++ + WH SCF C C + F + DG+
Sbjct: 475 FAPECGRCQRKIL----GEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDY 530
Query: 1017 -----VLCQGC 1034
+C GC
Sbjct: 531 YALFGTICHGC 541
>ref|XP_861766.1| PREDICTED: similar to PDZ and LIM domain 5 isoform b isoform 12
[Canis familiaris].
Length = 498
Score = 122 bits (306), Expect = 7e-28
Identities = 57/155 (36%), Positives = 75/155 (48%)
Frame = +3
Query: 564 GQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRD 743
G++WH F CS C+ + FV +KGA YC CYE FAP C RC + + +
Sbjct: 338 GKSWHPEEFNCSHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINALK 397
Query: 744 QPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVS 923
Q WH C VC C P+ F D +PYC + LF C C+ PI G ++
Sbjct: 398 QTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICHGCEFPIE--AGDMFLE 455
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQ 1028
WH +CF C+ C SL GQ F D+ LC+
Sbjct: 456 ALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLCK 490
Score = 88.2 bits (217), Expect = 2e-17
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 2/172 (1%)
Frame = +3
Query: 327 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSS 506
CA C Q+I L + +H F C C+ ++A F + L C CY F+
Sbjct: 322 CAHCNQVIRGPF--LVALGKSWHPEEFNCSHCKNTMAYIGFVEEKGALYCELCYEKFFAP 379
Query: 507 QCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFA 686
+C C ++ + QTWH CF+C C +P+ + F + G YC Y F
Sbjct: 380 ECGRCQRKIL--GEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFG 437
Query: 687 PRCARCSKTLTQGGVTYR--DQPWHRECLVCTGCQTPLAGQQFTSRDDDPYC 836
C C + G + WH C VC+ C L GQ F S+ D P C
Sbjct: 438 TICHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLC 489
Score = 86.3 bits (212), Expect = 6e-17
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQ-LIGHDSRELFYEDRHF 392
E F+C+ C ++ +++ YC CY+ FA C CQ+ ++G L + +
Sbjct: 344 EEFNCSHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINAL---KQTW 400
Query: 393 HEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQT 572
H CF C C + + + F +D E C Y + F + C C + G LE G T
Sbjct: 401 HVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICHGCEFPIEAGDMFLEALGYT 460
Query: 573 WHEHCFLCSGCEQPLGSCSFVPDKGAHYC 659
WH+ CF+CS C + L +F K C
Sbjct: 461 WHDTCFVCSVCCESLEGQTFFSKKDKPLC 489
Score = 66.6 bits (161), Expect = 5e-11
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Frame = +3
Query: 678 KFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGEL 857
K P CA C++ + + + WH E C+ C+ +A F YC C+ +
Sbjct: 317 KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCSHCKNTMAYIGFVEEKGALYCELCYEKF 376
Query: 858 FAPKCSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGF-VPDGDQ------ 1016
FAP+C C+R I G+ ++ + WH SCF C C + F + DG+
Sbjct: 377 FAPECGRCQRKIL----GEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDY 432
Query: 1017 -----VLCQGC 1034
+C GC
Sbjct: 433 YALFGTICHGC 443
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,478,811
Number of extensions: 1602120
Number of successful extensions: 11976
Number of sequences better than 1.0e-05: 87
Number of HSP's gapped: 10392
Number of HSP's successfully gapped: 229
Length of query: 425
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 319
Effective length of database: 15,340,888
Effective search space: 4893743272
Effective search space used: 4893743272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013331
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013331
(1275 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029395.1| four and a half LIM domains protein 3 [Bos t... 618 e-177
Alignment gi|NP_001039511.1| four and a half LIM domains protein 2 [Bos t... 381 e-106
Alignment gi|NP_001069847.1| four and a half LIM domains protein 5 [Bos t... 339 3e-93
Alignment gi|NP_001106729.1| four and a half LIM domains 1 isoform 1 [Bos... 300 1e-81
Alignment gi|NP_001106730.1| four and a half LIM domains 1 isoform 2 [Bos... 298 5e-81
Alignment gi|NP_001029513.1| four and a half LIM domains 1 isoform 3 [Bos... 179 5e-45
Alignment gi|NP_001030390.1| transforming growth factor beta-1-induced tr... 119 4e-27
Alignment gi|XP_002694569.1| PREDICTED: paxillin-like [Bos taurus]. 119 8e-27
Alignment gi|XP_595626.4| PREDICTED: paxillin-like [Bos taurus]. 119 8e-27
Alignment gi|NP_001106722.1| PDZ and LIM domain protein 7 isoform 2 [Bos ... 115 6e-26
>ref|NP_001029395.1| four and a half LIM domains protein 3 [Bos taurus].
Length = 280
Score = 618 bits (1593), Expect = e-177
Identities = 272/277 (98%), Positives = 274/277 (98%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
MSE FDCAKCSESLYGRKYIQTD+GPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
Sbjct: 1 MSEAFDCAKCSESLYGRKYIQTDDGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
Sbjct: 61 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
TWHEHCFLCSGCEQPLGS SFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
Sbjct: 121 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 929
WHRECLVCTGCQTPLAGQQFTSR+DDPYCV CFGELFAPKCSSCKRPITGLGGGKYVSFE
Sbjct: 181 WHRECLVCTGCQTPLAGQQFTSREDDPYCVTCFGELFAPKCSSCKRPITGLGGGKYVSFE 240
Query: 930 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ
Sbjct: 241 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 277
>ref|NP_001039511.1| four and a half LIM domains protein 2 [Bos taurus].
Length = 279
Score = 381 bits (979), Expect = e-106
Identities = 150/277 (54%), Positives = 208/277 (75%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
M+E FDC C +SL+GRKY+ + PYCV C++ FA+TC EC +LIG D ++L Y+DRH
Sbjct: 1 MTERFDCHHCEDSLFGRKYVLREEQPYCVACFEALFASTCEECGKLIGCDCKDLSYKDRH 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+HE CF C RC+ SL D+PF ++ +LLC DCY +SS+C C +++MPG+RK+EY G
Sbjct: 61 WHEACFHCSRCRGSLVDKPFAAKEDQLLCTDCYSQEYSSRCQECKKSIMPGTRKMEYKGS 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
+WHE CF+C C+QP+G+ SF+P ++CVPCYE ++A +C +C K +T GGVTYR+QP
Sbjct: 121 SWHETCFICHRCQQPIGTKSFIPKDSENFCVPCYERQYALQCVQCKKPITTGGVTYREQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 929
WHREC VCT C+ PL+GQ+FTSRD+ YC+ CF +L+A KC+ C PI+GLGG KY+SFE
Sbjct: 181 WHRECFVCTACKKPLSGQRFTSRDEFAYCLGCFCDLYAKKCAGCANPISGLGGTKYISFE 240
Query: 930 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
+R WH+ CF+C +CS SLVG+GF+ + D +LC C +
Sbjct: 241 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGK 277
>ref|NP_001069847.1| four and a half LIM domains protein 5 [Bos taurus].
Length = 284
Score = 339 bits (870), Expect = 3e-93
Identities = 131/271 (48%), Positives = 188/271 (69%)
Frame = +3
Query: 222 FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEG 401
F C C SL G+KY+ D+ PYCV CYD F+N C EC++ I S++L Y+ H+HEG
Sbjct: 6 FYCQYCMASLLGKKYVLKDDNPYCVSCYDRIFSNYCEECKEPIESGSKDLCYKGHHWHEG 65
Query: 402 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHE 581
CF C +C SL ++PF +D LLC++CY + SS+C C +T+MPGSRK+E+ G WHE
Sbjct: 66 CFNCTKCNHSLVEKPFAAKDERLLCSECYSNECSSKCFHCKKTIMPGSRKMEFKGNYWHE 125
Query: 582 HCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRE 761
CF+C C QP+G+ + + +YCVPC+E +FA C+ C K +T GG+T+RDQPWH+E
Sbjct: 126 TCFVCEHCRQPIGTKPLISKESGNYCVPCFEKEFAHYCSFCKKVITSGGITFRDQPWHKE 185
Query: 762 CLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRHW 941
C +C+GC+ L ++F SRDD P+C+ C+ L+A KC++C +PITGL G K++ F+DR W
Sbjct: 186 CFLCSGCRKELCEEEFMSRDDYPFCLDCYNHLYAKKCAACTKPITGLRGAKFICFQDRQW 245
Query: 942 HHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
H CF+C +CS SLVG+GF+ ++ C+ C
Sbjct: 246 HSECFNCGKCSVSLVGEGFLTHNKEIFCRKC 276
Score = 70.1 bits (170), Expect = 4e-12
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIG--HDSRELFYEDRH 389
E F C+ C + L +++ D+ P+C+ CY++ +A CA C + I ++ + ++DR
Sbjct: 185 ECFLCSGCRKELCEEEFMSRDDYPFCLDCYNHLYAKKCAACTKPITGLRGAKFICFQDRQ 244
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDC 485
+H CF C +C SL E F + E+ C C
Sbjct: 245 WHSECFNCGKCSVSLVGEGFLTHNKEIFCRKC 276
>ref|NP_001106729.1| four and a half LIM domains 1 isoform 1 [Bos taurus].
Length = 296
Score = 300 bits (769), Expect = 1e-81
Identities = 125/279 (44%), Positives = 179/279 (64%), Gaps = 1/279 (0%)
Frame = +3
Query: 207 TMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDR 386
TM+E FDC C ++L G+KY+Q D C+ C+D ANTC +C++ IG DS+E+ Y++R
Sbjct: 16 TMAEKFDCHYCRDNLQGKKYVQKDGHHCCLKCFDKFCANTCVQCRKPIGADSKEVHYKNR 75
Query: 387 HFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGG 566
++H+ CFRC +C + LA E F +D+++LCN C + +C C + ++ G + +EY G
Sbjct: 76 YWHDTCFRCSKCLQPLASETFVAKDNKILCNKCTTREDNPKCKGCLKPIVAGDQNVEYKG 135
Query: 567 QTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQ 746
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K +T GG+TY+DQ
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHEAKFAKHCVKCNKAITSGGITYQDQ 195
Query: 747 PWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLG-GGKYVS 923
PWH EC VC C LAGQ+FT+ +D YCV C+ A KC+ CK PITG G G V+
Sbjct: 196 PWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVA 255
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
+E + WH CF C +CS +L + FV +QV C C++
Sbjct: 256 YEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 294
Score = 101 bits (252), Expect = 1e-21
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Frame = +3
Query: 201 TATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYE 380
T + F C+ C + + + YCV C++ FA C +C + I S + Y+
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHEAKFAKHCVKCNKAI--TSGGITYQ 193
Query: 381 DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM---PGSRK 551
D+ +H CF C C + LA + FT + + C DCY + + +C+ C + GS
Sbjct: 194 DQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSV 253
Query: 552 LEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPC 668
+ Y GQ+WH++CF C C L + FV + YC C
Sbjct: 254 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDC 292
>ref|NP_001106730.1| four and a half LIM domains 1 isoform 2 [Bos taurus].
Length = 280
Score = 298 bits (764), Expect = 5e-81
Identities = 124/278 (44%), Positives = 178/278 (64%), Gaps = 1/278 (0%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
M+E FDC C ++L G+KY+Q D C+ C+D ANTC +C++ IG DS+E+ Y++R+
Sbjct: 1 MAEKFDCHYCRDNLQGKKYVQKDGHHCCLKCFDKFCANTCVQCRKPIGADSKEVHYKNRY 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+H+ CFRC +C + LA E F +D+++LCN C + +C C + ++ G + +EY G
Sbjct: 61 WHDTCFRCSKCLQPLASETFVAKDNKILCNKCTTREDNPKCKGCLKPIVAGDQNVEYKGT 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K +T GG+TY+DQP
Sbjct: 121 VWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHEAKFAKHCVKCNKAITSGGITYQDQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLG-GGKYVSF 926
WH EC VC C LAGQ+FT+ +D YCV C+ A KC+ CK PITG G G V++
Sbjct: 181 WHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVAY 240
Query: 927 EDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
E + WH CF C +CS +L + FV +QV C C++
Sbjct: 241 EGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 278
Score = 101 bits (252), Expect = 1e-21
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Frame = +3
Query: 201 TATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYE 380
T + F C+ C + + + YCV C++ FA C +C + I S + Y+
Sbjct: 120 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHEAKFAKHCVKCNKAI--TSGGITYQ 177
Query: 381 DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM---PGSRK 551
D+ +H CF C C + LA + FT + + C DCY + + +C+ C + GS
Sbjct: 178 DQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSV 237
Query: 552 LEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPC 668
+ Y GQ+WH++CF C C L + FV + YC C
Sbjct: 238 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDC 276
>ref|NP_001029513.1| four and a half LIM domains 1 isoform 3 [Bos taurus].
Length = 194
Score = 179 bits (454), Expect = 5e-45
Identities = 75/182 (41%), Positives = 115/182 (63%), Gaps = 2/182 (1%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
M+E FDC C ++L G+KY+Q D C+ C+D ANTC +C++ IG DS+E+ Y++R+
Sbjct: 1 MAEKFDCHYCRDNLQGKKYVQKDGHHCCLKCFDKFCANTCVQCRKPIGADSKEVHYKNRY 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+H+ CFRC +C + LA E F +D+++LCN C + +C C + ++ G + +EY G
Sbjct: 61 WHDTCFRCSKCLQPLASETFVAKDNKILCNKCTTREDNPKCKGCLKPIVAGDQNVEYKGT 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTY--RD 743
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K L + V + +D
Sbjct: 121 VWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHEAKFAKHCVKCNKGLVKAPVWWPMKD 180
Query: 744 QP 749
P
Sbjct: 181 NP 182
Score = 105 bits (263), Expect = 7e-23
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Frame = +3
Query: 405 FRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHEH 584
F C C+ +L + + +D C C+ ++ C C + + S+++ Y + WH+
Sbjct: 5 FDCHYCRDNLQGKKYVQKDGHHCCLKCFDKFCANTCVQCRKPIGADSKEVHYKNRYWHDT 64
Query: 585 CFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQG--GVTYRDQPWHR 758
CF CS C QPL S +FV C C + P+C C K + G V Y+ WH+
Sbjct: 65 CFRCSKCLQPLASETFVAKDNKILCNKCTTREDNPKCKGCLKPIVAGDQNVEYKGTVWHK 124
Query: 759 ECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKR 887
+C C+ C+ + F + +D YCV C FA C C +
Sbjct: 125 DCFTCSNCKQVIGTGSFFPKGEDFYCVTCHEAKFAKHCVKCNK 167
Score = 97.4 bits (241), Expect = 2e-20
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 2/153 (1%)
Frame = +3
Query: 588 FLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGG--VTYRDQPWHRE 761
F C C L +V G H C+ C++ A C +C K + V Y+++ WH
Sbjct: 5 FDCHYCRDNLQGKKYVQKDGHHCCLKCFDKFCANTCVQCRKPIGADSKEVHYKNRYWHDT 64
Query: 762 CLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRHW 941
C C+ C PLA + F ++D+ C C PKC C +PI + G + V ++ W
Sbjct: 65 CFRCSKCLQPLASETFVAKDNKILCNKCTTREDNPKCKGCLKPI--VAGDQNVEYKGTVW 122
Query: 942 HHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
H CF+C+ C + F P G+ C C +
Sbjct: 123 HKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHE 155
>ref|NP_001030390.1| transforming growth factor beta-1-induced transcript 1 protein [Bos
taurus].
Length = 439
Score = 119 bits (299), Expect = 4e-27
Identities = 57/173 (32%), Positives = 78/173 (45%)
Frame = +3
Query: 510 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAP 689
C +C + + + + G+ WH F+C GC LG SF GA +C CY +F+P
Sbjct: 206 CGSCNKPI--AGQVVTALGRAWHPEHFVCGGCSTALGGSSFFEKDGAPFCPECYFERFSP 263
Query: 690 RCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPK 869
RC C++ + VT WH E C C P + F R+ PYC F +LFAP+
Sbjct: 264 RCGLCNQPIRHKMVTALGTHWHPEHFCCVSCGEPFGDEGFHEREGRPYCRRDFLQLFAPR 323
Query: 870 CSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQ 1028
C C+ PI Y+S WH CF C C G F + LC+
Sbjct: 324 CQGCQGPIL----DNYISALSALWHPDCFVCRECFAPFSGGSFFEHEGRPLCE 372
Score = 111 bits (278), Expect = 1e-24
Identities = 62/217 (28%), Positives = 87/217 (40%)
Frame = +3
Query: 384 RHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYG 563
R +H F C C +L F +D C +CY FS +C C + + + +
Sbjct: 223 RAWHPEHFVCGGCSTALGGSSFFEKDGAPFCPECYFERFSPRCGLCNQPIR--HKMVTAL 280
Query: 564 GQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRD 743
G WH F C C +P G F +G YC + FAPRC C + ++
Sbjct: 281 GTHWHPEHFCCVSCGEPFGDEGFHEREGRPYCRRDFLQLFAPRCQGCQGPILDNYISALS 340
Query: 744 QPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVS 923
WH +C VC C P +G F + P C F C++C P+T G+ VS
Sbjct: 341 ALWHPDCFVCRECFAPFSGGSFFEHEGRPLCENHFHARRGSLCATCGLPVT----GRCVS 396
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
R +H F+C C L F + CQ C
Sbjct: 397 ALGRRFHPDHFTCTFCLRPLTKGSFQERAGKPYCQPC 433
Score = 110 bits (275), Expect = 3e-24
Identities = 61/215 (28%), Positives = 87/215 (40%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFH 395
E F C CS +L G + + D P+C CY F+ C C Q I H + + H+H
Sbjct: 228 EHFVCGGCSTALGGSSFFEKDGAPFCPECYFERFSPRCGLCNQPIRH--KMVTALGTHWH 285
Query: 396 EGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTW 575
F C C DE F ++ C + F+ +C C ++ + W
Sbjct: 286 PEHFCCVSCGEPFGDEGFHEREGRPYCRRDFLQLFAPRCQGCQGPIL--DNYISALSALW 343
Query: 576 HEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPWH 755
H CF+C C P SF +G C + + CA C +T V+ + +H
Sbjct: 344 HPDCFVCRECFAPFSGGSFFEHEGRPLCENHFHARRGSLCATCGLPVTGRCVSALGRRFH 403
Query: 756 RECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELF 860
+ CT C PL F R PYC CF +LF
Sbjct: 404 PDHFTCTFCLRPLTKGSFQERAGKPYCQPCFLKLF 438
>ref|XP_002694569.1| PREDICTED: paxillin-like [Bos taurus].
Length = 427
Score = 119 bits (297), Expect = 8e-27
Identities = 63/215 (29%), Positives = 94/215 (43%)
Frame = +3
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+H F C CQ + F +D + C Y + FS +C C ++ + + +
Sbjct: 213 WHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDYHNLFSPRCYYCNGPIL--DKVVTALDR 270
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
TWH F C+ C G F G YC Y + FAP+C C++ + + ++ +
Sbjct: 271 TWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDMFAPKCGGCARAILENYISALNTL 330
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 929
WH EC VC C TP F + PYC A + E CS C++PIT G+ ++
Sbjct: 331 WHPECFVCRECFTPFVHGSFFEHEGQPYCEAHYHERRGSLCSGCQKPIT----GRCITAM 386
Query: 930 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
+ +H F CA C L F D+ CQ C
Sbjct: 387 AKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQNC 421
Score = 114 bits (285), Expect = 2e-25
Identities = 65/228 (28%), Positives = 93/228 (40%), Gaps = 5/228 (2%)
Frame = +3
Query: 192 GSITATMSET-----FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGH 356
G + M +T F C C E + R + + D PYC Y N F+ C C I
Sbjct: 203 GQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDYHNLFSPRCYYCNGPIL- 261
Query: 357 DSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM 536
+ + DR +H F C +C E F +D + C Y F+ +C C ++
Sbjct: 262 -DKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDMFAPKCGGCARAIL 320
Query: 537 PGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTL 716
+ WH CF+C C P SF +G YC Y + C+ C K +
Sbjct: 321 --ENYISALNTLWHPECFVCRECFTPFVHGSFFEHEGQPYCEAHYHERRGSLCSGCQKPI 378
Query: 717 TQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELF 860
T +T + +H E VC C L F ++D PYC CF +LF
Sbjct: 379 TGRCITAMAKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQNCFLKLF 426
Score = 110 bits (276), Expect = 2e-24
Identities = 56/173 (32%), Positives = 79/173 (45%)
Frame = +3
Query: 510 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAP 689
C AC + + + + G+TWH F+C+ C++ +GS +F G YC Y N F+P
Sbjct: 194 CGACKKPI--AGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDYHNLFSP 251
Query: 690 RCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPK 869
RC C+ + VT D+ WH E C C + F +D YC + ++FAPK
Sbjct: 252 RCYYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDMFAPK 311
Query: 870 CSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQ 1028
C C R I Y+S + WH CF C C T V F Q C+
Sbjct: 312 CGGCARAIL----ENYISALNTLWHPECFVCRECFTPFVHGSFFEHEGQPYCE 360
>ref|XP_595626.4| PREDICTED: paxillin-like [Bos taurus].
Length = 424
Score = 119 bits (297), Expect = 8e-27
Identities = 63/215 (29%), Positives = 94/215 (43%)
Frame = +3
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+H F C CQ + F +D + C Y + FS +C C ++ + + +
Sbjct: 210 WHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDYHNLFSPRCYYCNGPIL--DKVVTALDR 267
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
TWH F C+ C G F G YC Y + FAP+C C++ + + ++ +
Sbjct: 268 TWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDMFAPKCGGCARAILENYISALNTL 327
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 929
WH EC VC C TP F + PYC A + E CS C++PIT G+ ++
Sbjct: 328 WHPECFVCRECFTPFVHGSFFEHEGQPYCEAHYHERRGSLCSGCQKPIT----GRCITAM 383
Query: 930 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
+ +H F CA C L F D+ CQ C
Sbjct: 384 AKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQNC 418
Score = 114 bits (285), Expect = 2e-25
Identities = 65/228 (28%), Positives = 93/228 (40%), Gaps = 5/228 (2%)
Frame = +3
Query: 192 GSITATMSET-----FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGH 356
G + M +T F C C E + R + + D PYC Y N F+ C C I
Sbjct: 200 GQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDYHNLFSPRCYYCNGPIL- 258
Query: 357 DSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM 536
+ + DR +H F C +C E F +D + C Y F+ +C C ++
Sbjct: 259 -DKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDMFAPKCGGCARAIL 317
Query: 537 PGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTL 716
+ WH CF+C C P SF +G YC Y + C+ C K +
Sbjct: 318 --ENYISALNTLWHPECFVCRECFTPFVHGSFFEHEGQPYCEAHYHERRGSLCSGCQKPI 375
Query: 717 TQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELF 860
T +T + +H E VC C L F ++D PYC CF +LF
Sbjct: 376 TGRCITAMAKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQNCFLKLF 423
Score = 110 bits (276), Expect = 2e-24
Identities = 56/173 (32%), Positives = 79/173 (45%)
Frame = +3
Query: 510 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAP 689
C AC + + + + G+TWH F+C+ C++ +GS +F G YC Y N F+P
Sbjct: 191 CGACKKPI--AGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDYHNLFSP 248
Query: 690 RCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPK 869
RC C+ + VT D+ WH E C C + F +D YC + ++FAPK
Sbjct: 249 RCYYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDMFAPK 308
Query: 870 CSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQ 1028
C C R I Y+S + WH CF C C T V F Q C+
Sbjct: 309 CGGCARAIL----ENYISALNTLWHPECFVCRECFTPFVHGSFFEHEGQPYCE 357
>ref|NP_001106722.1| PDZ and LIM domain protein 7 isoform 2 [Bos taurus].
Length = 424
Score = 115 bits (289), Expect = 6e-26
Identities = 55/173 (31%), Positives = 84/173 (48%)
Frame = +3
Query: 510 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAP 689
C C + + R L G+ +H F+CS C + L F +KGA +C PCY+ ++AP
Sbjct: 249 CHQCHKVIR--GRYLVALGRAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPPCYDVRYAP 306
Query: 690 RCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPK 869
CA+C K +T + WH C C C+ P+ + F + PYC + ++F K
Sbjct: 307 SCAKCKKKITGEVMHALKTTWHVHCFTCAACKAPIRNRAFYMEEGAPYCEPDYEKMFGTK 366
Query: 870 CSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQ 1028
C C I G +++ WH +CF CA C +L G+ F D+ LC+
Sbjct: 367 CRGCDFKID--AGDRFLEALGFSWHDTCFVCAICQINLEGKTFYSKKDKPLCK 417
Score = 86.7 bits (213), Expect = 4e-17
Identities = 57/234 (24%), Positives = 89/234 (38%), Gaps = 15/234 (6%)
Frame = +3
Query: 3 SSRRGWGRAPT--RPHSPCAAGSLAGSSLGPARPGP--------QVGAAEGRGPGCXXXX 152
+SR W P ++P ++ PA P P Q A G G G
Sbjct: 185 TSRPPWAVDPAFAERYAPDKTSTVLTRHTQPATPTPMQNRTSIVQAAAGGGHGGGGGSNG 244
Query: 153 XXXXXXXXXXXFEGSITATMS-----ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTF 317
G + E F C++C + L + + +C PCYD +
Sbjct: 245 KTPVCHQCHKVIRGRYLVALGRAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPPCYDVRY 304
Query: 318 ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 497
A +CA+C++ I + H H CF C C+ + + F ++ C Y
Sbjct: 305 APSCAKCKKKITGEVMHALKTTWHVH--CFTCAACKAPIRNRAFYMEEGAPYCEPDYEKM 362
Query: 498 FSSQCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYC 659
F ++C C + G R LE G +WH+ CF+C+ C+ L +F K C
Sbjct: 363 FGTKCRGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINLEGKTFYSKKDKPLC 416
Score = 59.3 bits (142), Expect = 7e-09
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Frame = +3
Query: 675 NKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGE 854
N P C +C K + + + +H E VC+ C L F +C C+
Sbjct: 243 NGKTPVCHQCHKVIRGRYLVALGRAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPPCYDV 302
Query: 855 LFAPKCSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFV---------PD 1007
+AP C+ CK+ IT G+ + WH CF+CA C + + F PD
Sbjct: 303 RYAPSCAKCKKKIT----GEVMHALKTTWHVHCFTCAACKAPIRNRAFYMEEGAPYCEPD 358
Query: 1008 GDQVL---CQGC 1034
+++ C+GC
Sbjct: 359 YEKMFGTKCRGC 370
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,630,649
Number of extensions: 1567873
Number of successful extensions: 11635
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 10254
Number of HSP's successfully gapped: 159
Length of query: 425
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 320
Effective length of database: 14,207,134
Effective search space: 4546282880
Effective search space used: 4546282880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013331
(1275 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127846.1| PREDICTED: four and a half LIM domains prote... 629 0.0
Alignment gi|NP_999111.1| four and a half LIM domains protein 3 [Sus scro... 624 e-179
Alignment gi|NP_001230243.1| four and a half LIM domains protein 5 [Sus s... 347 1e-95
Alignment gi|XP_003124907.2| PREDICTED: four and a half LIM domains prote... 317 9e-87
Alignment gi|NP_999540.1| four and a half LIM domains 1 protein, isoform ... 303 2e-82
Alignment gi|XP_003359314.1| PREDICTED: hypothetical protein LOC100151883... 120 2e-27
Alignment gi|XP_003357122.1| PREDICTED: PDZ and LIM domain protein 5, par... 119 3e-27
Alignment gi|XP_003133450.2| PREDICTED: LIM and senescent cell antigen-li... 118 6e-27
Alignment gi|XP_003359555.1| PREDICTED: LIM and senescent cell antigen-li... 115 5e-26
Alignment gi|NP_001230787.1| LIM and senescent cell antigen-like domains ... 115 5e-26
>ref|XP_003127846.1| PREDICTED: four and a half LIM domains protein 3-like [Sus scrofa].
Length = 280
Score = 629 bits (1623), Expect = 0.0
Identities = 277/277 (100%), Positives = 277/277 (100%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
Sbjct: 1 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
Sbjct: 61 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
Sbjct: 121 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 929
WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE
Sbjct: 181 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 240
Query: 930 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ
Sbjct: 241 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 277
>ref|NP_999111.1| four and a half LIM domains protein 3 [Sus scrofa].
Length = 280
Score = 624 bits (1610), Expect = e-179
Identities = 275/277 (99%), Positives = 276/277 (99%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYD+TFANTCAECQQLIGHDSRELFYEDRH
Sbjct: 1 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDSTFANTCAECQQLIGHDSRELFYEDRH 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSAC ETVMPGSRKLEYGGQ
Sbjct: 61 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACRETVMPGSRKLEYGGQ 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
Sbjct: 121 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 929
WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE
Sbjct: 181 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 240
Query: 930 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ
Sbjct: 241 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 277
>ref|NP_001230243.1| four and a half LIM domains protein 5 [Sus scrofa].
Length = 284
Score = 347 bits (889), Expect = 1e-95
Identities = 133/271 (49%), Positives = 190/271 (70%)
Frame = +3
Query: 222 FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEG 401
FDC C+ SL G+KY+ D+ PYCV CYD F+N C EC++ I DS++L Y+ RH+HEG
Sbjct: 6 FDCQYCTASLLGKKYVLKDDNPYCVSCYDRIFSNYCEECKEPIESDSKDLCYKGRHWHEG 65
Query: 402 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHE 581
CF C +C SL ++PF +D LLC++CY + SS+C C T+MPGSRK+E+ G WHE
Sbjct: 66 CFNCAKCNHSLVEKPFAAKDERLLCSECYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHE 125
Query: 582 HCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRE 761
CF+C C QP+G+ + + +YCVPC+E +FA C+ C K +T GG+T+ DQPWH+E
Sbjct: 126 TCFVCEHCRQPIGTKPLISKENGNYCVPCFEKEFAHYCSFCKKVITSGGITFHDQPWHKE 185
Query: 762 CLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRHW 941
C +C+GC+ L ++F S+DD P+C+ C+ L+A KCS+C +PITGL G K++ F+DR W
Sbjct: 186 CFLCSGCRKELCEEEFMSKDDYPFCLDCYNHLYAKKCSACTKPITGLRGAKFICFQDRQW 245
Query: 942 HHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
H CF+C +CS SLVG+GF+ ++ C+ C
Sbjct: 246 HSECFNCGKCSVSLVGEGFLTQNKEIFCRKC 276
Score = 70.9 bits (172), Expect = 1e-12
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIG--HDSRELFYEDRH 389
E F C+ C + L +++ D+ P+C+ CY++ +A C+ C + I ++ + ++DR
Sbjct: 185 ECFLCSGCRKELCEEEFMSKDDYPFCLDCYNHLYAKKCSACTKPITGLRGAKFICFQDRQ 244
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDC 485
+H CF C +C SL E F Q+ E+ C C
Sbjct: 245 WHSECFNCGKCSVSLVGEGFLTQNKEIFCRKC 276
>ref|XP_003124907.2| PREDICTED: four and a half LIM domains protein 2-like isoform 2
[Sus scrofa].
Length = 256
Score = 317 bits (812), Expect = 9e-87
Identities = 126/232 (54%), Positives = 171/232 (73%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
M+E FDC C SL+GRKY+ + PYCV C++ FA+TC EC +LIG D ++L Y+DRH
Sbjct: 1 MTERFDCHHCENSLFGRKYVLREEQPYCVGCFEALFASTCEECGKLIGCDCKDLSYKDRH 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+HE CF C RC+ SL D+PF ++ ++LC DCY +SS+C C + +MPG+RK+EY G
Sbjct: 61 WHEACFHCSRCRSSLVDKPFAAKEDQVLCTDCYSQEYSSRCQECRKAIMPGTRKMEYKGS 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
+WHE CF C C+QP+G+ SF+P G ++CVPCYE + A +C +C K +T GGVTYR+QP
Sbjct: 121 SWHETCFTCHRCQQPIGTKSFIPKDGQNFCVPCYEKQHALQCIQCKKPITSGGVTYREQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLG 905
WHREC VCT C+ PL+GQ+FTSRD+ YC+ CF +L+A KC+ C PI+GLG
Sbjct: 181 WHRECFVCTACKKPLSGQRFTSRDEFAYCLGCFCDLYAKKCTGCANPISGLG 232
Score = 150 bits (380), Expect = 1e-36
Identities = 67/212 (31%), Positives = 99/212 (46%), Gaps = 2/212 (0%)
Frame = +3
Query: 405 FRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHEH 584
F C C+ SL + ++ + C C+ + F+S C CG+ + + L Y + WHE
Sbjct: 5 FDCHHCENSLFGRKYVLREEQPYCVGCFEALFASTCEECGKLIGCDCKDLSYKDRHWHEA 64
Query: 585 CFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGG--VTYRDQPWHR 758
CF CS C L F + C CY +++ RC C K + G + Y+ WH
Sbjct: 65 CFHCSRCRSSLVDKPFAAKEDQVLCTDCYSQEYSSRCQECRKAIMPGTRKMEYKGSSWHE 124
Query: 759 ECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRH 938
C C CQ P+ + F +D +CV C+ + A +C CK+PIT G V++ ++
Sbjct: 125 TCFTCHRCQQPIGTKSFIPKDGQNFCVPCYEKQHALQCIQCKKPITSGG----VTYREQP 180
Query: 939 WHHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
WH CF C C L GQ F + C GC
Sbjct: 181 WHRECFVCTACKKPLSGQRFTSRDEFAYCLGC 212
>ref|NP_999540.1| four and a half LIM domains 1 protein, isoform C [Sus scrofa].
Length = 296
Score = 303 bits (775), Expect = 2e-82
Identities = 127/279 (45%), Positives = 178/279 (63%), Gaps = 1/279 (0%)
Frame = +3
Query: 207 TMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDR 386
TM+E FDC C + L G+KY+Q D C+ C+D ANTC EC++ IG DS+E+ Y++R
Sbjct: 16 TMAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNR 75
Query: 387 HFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGG 566
++H+ CFRC +C LA+E F +D+++LCN C S +C C + ++ G + +EY G
Sbjct: 76 YWHDTCFRCSKCLHPLANETFMAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKG 135
Query: 567 QTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQ 746
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K +T GG+TY+DQ
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQ 195
Query: 747 PWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLG-GGKYVS 923
PWH EC VC C LAGQ+FT+ +D YCV C+ A KC+ CK PITG G G V+
Sbjct: 196 PWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVA 255
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
+E + WH CF C +CS +L + FV +QV C C++
Sbjct: 256 YEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 294
Score = 102 bits (254), Expect = 5e-22
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Frame = +3
Query: 201 TATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYE 380
T + F C+ C + + + YCV C++ FA C +C + I S + Y+
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAI--TSGGITYQ 193
Query: 381 DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM---PGSRK 551
D+ +H CF C C + LA + FT + + C DCY + + +C+ C + GS
Sbjct: 194 DQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSV 253
Query: 552 LEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPC 668
+ Y GQ+WH++CF C C L + FV + YC C
Sbjct: 254 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDC 292
>ref|XP_003359314.1| PREDICTED: hypothetical protein LOC100151883 [Sus scrofa].
Length = 715
Score = 120 bits (301), Expect = 2e-27
Identities = 55/155 (35%), Positives = 76/155 (49%)
Frame = +3
Query: 564 GQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRD 743
G++WH F C+ C+ L FV ++ YC CYE FAP CA+C+ + +
Sbjct: 555 GRSWHPEEFNCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPVCAKCNTKIMGEVMHALR 614
Query: 744 QPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVS 923
Q WH C VC C+ P F D +PYC + LF+ KC C P+ G K++
Sbjct: 615 QTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYVNLFSTKCHGCDFPVE--AGDKFIE 672
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQ 1028
WH +CF CA C +L GQ F D+ LC+
Sbjct: 673 ALGHTWHDTCFICAVCHVNLEGQPFYSKKDKPLCK 707
Score = 103 bits (258), Expect = 2e-22
Identities = 54/172 (31%), Positives = 76/172 (44%), Gaps = 2/172 (1%)
Frame = +3
Query: 327 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSS 506
C C +I L R +H F C C+ SLAD F + + + C CY F+
Sbjct: 539 CGHCNSIIRGPF--LVAMGRSWHPEEFNCAYCKTSLADVCFVEEQNNVYCERCYEQFFAP 596
Query: 507 QCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFA 686
C+ C +M + QTWH CF+C+ C++P G+ F + G YC Y N F+
Sbjct: 597 VCAKCNTKIM--GEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYVNLFS 654
Query: 687 PRCARCSKTLTQGG--VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYC 836
+C C + G + WH C +C C L GQ F S+ D P C
Sbjct: 655 TKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDKPLC 706
Score = 95.9 bits (237), Expect = 4e-20
Identities = 47/148 (31%), Positives = 68/148 (45%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFH 395
E F+CA C SL +++ N YC CY+ FA CA+C I + + +H
Sbjct: 561 EEFNCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPVCAKCNTKIMGEVMHALRQT--WH 618
Query: 396 EGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTW 575
CF C C++ + F +D E C Y + FS++C C V G + +E G TW
Sbjct: 619 TTCFVCAACKKPFGNSLFHMEDGEPYCEKDYVNLFSTKCHGCDFPVEAGDKFIEALGHTW 678
Query: 576 HEHCFLCSGCEQPLGSCSFVPDKGAHYC 659
H+ CF+C+ C L F K C
Sbjct: 679 HDTCFICAVCHVNLEGQPFYSKKDKPLC 706
Score = 63.9 bits (154), Expect = 2e-10
Identities = 31/114 (27%), Positives = 48/114 (42%)
Frame = +3
Query: 687 PRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAP 866
P C C+ + + + WH E C C+T LA F ++ YC C+ + FAP
Sbjct: 537 PLCGHCNSIIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQNNVYCERCYEQFFAP 596
Query: 867 KCSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQ 1028
C+ C I G+ + + WH +CF CA C F + + C+
Sbjct: 597 VCAKCNTKIM----GEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCE 646
>ref|XP_003357122.1| PREDICTED: PDZ and LIM domain protein 5, partial [Sus scrofa].
Length = 226
Score = 119 bits (299), Expect = 3e-27
Identities = 55/155 (35%), Positives = 75/155 (48%)
Frame = +3
Query: 564 GQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRD 743
G++WH F C+ C+ + FV ++GA YC CYE FAP C RC + + +
Sbjct: 66 GKSWHPEEFNCAHCKNTMAYIGFVEEQGALYCELCYEKFFAPECGRCQRKILGEVINALK 125
Query: 744 QPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVS 923
Q WH C VC C P+ F D +PYC + LF C C+ PI G ++
Sbjct: 126 QTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICHGCEFPIE--AGDMFLE 183
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQ 1028
WH +CF C+ C SL GQ F D+ LC+
Sbjct: 184 ALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLCK 218
Score = 89.0 bits (219), Expect = 5e-18
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 2/172 (1%)
Frame = +3
Query: 327 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSS 506
CA C Q+I L + +H F C C+ ++A F + L C CY F+
Sbjct: 50 CAHCNQVIRGPF--LVALGKSWHPEEFNCAHCKNTMAYIGFVEEQGALYCELCYEKFFAP 107
Query: 507 QCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFA 686
+C C ++ + QTWH CF+C C +P+ + F + G YC Y F
Sbjct: 108 ECGRCQRKIL--GEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFG 165
Query: 687 PRCARCSKTLTQGGVTYR--DQPWHRECLVCTGCQTPLAGQQFTSRDDDPYC 836
C C + G + WH C VC+ C L GQ F S+ D P C
Sbjct: 166 TICHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLC 217
Score = 87.8 bits (216), Expect = 1e-17
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQ-LIGHDSRELFYEDRHF 392
E F+CA C ++ +++ YC CY+ FA C CQ+ ++G L + +
Sbjct: 72 EEFNCAHCKNTMAYIGFVEEQGALYCELCYEKFFAPECGRCQRKILGEVINAL---KQTW 128
Query: 393 HEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQT 572
H CF C C + + + F +D E C Y + F + C C + G LE G T
Sbjct: 129 HVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICHGCEFPIEAGDMFLEALGYT 188
Query: 573 WHEHCFLCSGCEQPLGSCSFVPDKGAHYC 659
WH+ CF+CS C + L +F K C
Sbjct: 189 WHDTCFVCSVCCESLEGQTFFSKKDKPLC 217
Score = 66.6 bits (161), Expect = 3e-11
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Frame = +3
Query: 678 KFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGEL 857
K P CA C++ + + + WH E C C+ +A F YC C+ +
Sbjct: 45 KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEQGALYCELCYEKF 104
Query: 858 FAPKCSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGF-VPDGDQ------ 1016
FAP+C C+R I G+ ++ + WH SCF C C + F + DG+
Sbjct: 105 FAPECGRCQRKIL----GEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDY 160
Query: 1017 -----VLCQGC 1034
+C GC
Sbjct: 161 YALFGTICHGC 171
>ref|XP_003133450.2| PREDICTED: LIM and senescent cell antigen-like-containing domain
protein 2-like isoform 1 [Sus scrofa].
Length = 318
Score = 118 bits (296), Expect = 6e-27
Identities = 69/259 (26%), Positives = 107/259 (41%), Gaps = 6/259 (2%)
Frame = +3
Query: 231 AKCSESLYGRKYIQTDNGPYCVPCYDNTFANT-CAECQQLIGHDSRELFYEDRHFHEGCF 407
A + LY R+ + P N AN C CQ R + +HE CF
Sbjct: 7 ALAASGLYRRRQHRPSPPPAAPGNMSNALANAVCQRCQARFAPSERIVNSNGELYHEHCF 66
Query: 408 RCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHEHC 587
C +C R + F + C + F+ C +CGE ++ R ++ WH C
Sbjct: 67 VCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFII--GRVIKAMNNNWHPGC 124
Query: 588 FLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPR-----CARCSKTLTQGGVTYRDQPW 752
F C C+ L FV + G H C PC+ + A C RC + + + +R+ +
Sbjct: 125 FRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRNDAY 184
Query: 753 HRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFED 932
H + CT C L + + YC+ C ++ P C +C+RPI G+ V+
Sbjct: 185 HPDHFNCTHCGKELTAEA-RELKGELYCLPCHDKMGVPICGACRRPIE----GRVVNALG 239
Query: 933 RHWHHSCFSCARCSTSLVG 989
+ WH F CA+C +G
Sbjct: 240 KQWHVEHFVCAKCEKPFLG 258
Score = 110 bits (275), Expect = 2e-24
Identities = 69/259 (26%), Positives = 106/259 (40%), Gaps = 5/259 (1%)
Frame = +3
Query: 222 FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEG 401
F CA+C + + + YC + FA C C + I R + + ++H G
Sbjct: 66 FVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFI--IGRVIKAMNNNWHPG 123
Query: 402 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQ-----CSACGETVMPGSRKLEYGG 566
CFRC C LAD F LC C+ + C C + + L +
Sbjct: 124 CFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVI--DEQPLMFRN 181
Query: 567 QTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQ 746
+H F C+ C + L + KG YC+PC++ P C C + + V +
Sbjct: 182 DAYHPDHFNCTHCGKEL-TAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGK 240
Query: 747 PWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSF 926
WH E VC C+ P G + + YC + +LF C +C I G VS
Sbjct: 241 QWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIE----GDVVSA 296
Query: 927 EDRHWHHSCFSCARCSTSL 983
++ W +CFSC+ C++ L
Sbjct: 297 LNKAWCVNCFSCSTCNSRL 315
Score = 73.6 bits (179), Expect = 2e-13
Identities = 45/180 (25%), Positives = 66/180 (36%), Gaps = 5/180 (2%)
Frame = +3
Query: 510 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAP 689
C C P R + G+ +HEHCF+C+ C +P F +G YC ++ FAP
Sbjct: 40 CQRCQARFAPSERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAP 99
Query: 690 RCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPK 869
C C + + + + WH C C C LA F C C A
Sbjct: 100 CCGSCGEFIIGRVIKAMNNNWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKG 159
Query: 870 -----CSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
C C I + + F + +H F+C C L + G ++ C C
Sbjct: 160 LGKYICQRCHLVI----DEQPLMFRNDAYHPDHFNCTHCGKELTAEARELKG-ELYCLPC 214
>ref|XP_003359555.1| PREDICTED: LIM and senescent cell antigen-like-containing domain
protein 2-like isoform 2 [Sus scrofa].
Length = 293
Score = 115 bits (288), Expect = 5e-26
Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 6/233 (2%)
Frame = +3
Query: 309 NTFANT-CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDC 485
N AN C CQ R + +HE CF C +C R + F + C
Sbjct: 8 NALANAVCQRCQARFAPSERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHD 67
Query: 486 YCSAFSSQCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVP 665
+ F+ C +CGE ++ R ++ WH CF C C+ L FV + G H C P
Sbjct: 68 FQMLFAPCCGSCGEFII--GRVIKAMNNNWHPGCFRCELCDVELADLGFVKNAGRHLCRP 125
Query: 666 CYENKFAPR-----CARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDP 830
C+ + A C RC + + + +R+ +H + CT C L + +
Sbjct: 126 CHNREKAKGLGKYICQRCHLVIDEQPLMFRNDAYHPDHFNCTHCGKELTAEA-RELKGEL 184
Query: 831 YCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVG 989
YC+ C ++ P C +C+RPI G+ V+ + WH F CA+C +G
Sbjct: 185 YCLPCHDKMGVPICGACRRPIE----GRVVNALGKQWHVEHFVCAKCEKPFLG 233
Score = 110 bits (275), Expect = 2e-24
Identities = 69/259 (26%), Positives = 106/259 (40%), Gaps = 5/259 (1%)
Frame = +3
Query: 222 FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEG 401
F CA+C + + + YC + FA C C + I R + + ++H G
Sbjct: 41 FVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFI--IGRVIKAMNNNWHPG 98
Query: 402 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQ-----CSACGETVMPGSRKLEYGG 566
CFRC C LAD F LC C+ + C C + + L +
Sbjct: 99 CFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVI--DEQPLMFRN 156
Query: 567 QTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQ 746
+H F C+ C + L + KG YC+PC++ P C C + + V +
Sbjct: 157 DAYHPDHFNCTHCGKEL-TAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGK 215
Query: 747 PWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSF 926
WH E VC C+ P G + + YC + +LF C +C I G VS
Sbjct: 216 QWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIE----GDVVSA 271
Query: 927 EDRHWHHSCFSCARCSTSL 983
++ W +CFSC+ C++ L
Sbjct: 272 LNKAWCVNCFSCSTCNSRL 290
Score = 73.6 bits (179), Expect = 2e-13
Identities = 45/180 (25%), Positives = 66/180 (36%), Gaps = 5/180 (2%)
Frame = +3
Query: 510 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAP 689
C C P R + G+ +HEHCF+C+ C +P F +G YC ++ FAP
Sbjct: 15 CQRCQARFAPSERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAP 74
Query: 690 RCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPK 869
C C + + + + WH C C C LA F C C A
Sbjct: 75 CCGSCGEFIIGRVIKAMNNNWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKG 134
Query: 870 -----CSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
C C I + + F + +H F+C C L + G ++ C C
Sbjct: 135 LGKYICQRCHLVI----DEQPLMFRNDAYHPDHFNCTHCGKELTAEARELKG-ELYCLPC 189
>ref|NP_001230787.1| LIM and senescent cell antigen-like domains 1 [Sus scrofa].
Length = 325
Score = 115 bits (288), Expect = 5e-26
Identities = 76/279 (27%), Positives = 115/279 (41%), Gaps = 6/279 (2%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFH 395
+ F CA+C + + + + YC + FA C +C + I R + + +H
Sbjct: 34 QCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFI--IGRVIKAMNNSWH 91
Query: 396 EGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQ-----CSACGETVMPGSRKLEY 560
CFRC CQ LAD F LC C + C C + + L +
Sbjct: 92 PECFRCDLCQEVLADIGFVKNAGRHLCRPCRNREKARGLGKYICQKCHAII--DEQPLIF 149
Query: 561 GGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYR 740
+H F C+ C + L + KG YC+PC++ P C C + + V
Sbjct: 150 KNDPYHPDHFNCANCGKEL-TADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAM 208
Query: 741 DQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYV 920
+ WH E VC C+ P G + R YC + +LF C C R I G V
Sbjct: 209 GKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIE----GDVV 264
Query: 921 SFEDRHWHHSCFSCARCSTSL-VGQGFVPDGDQVLCQGC 1034
S ++ W SCF+C+ C+T L + FV + +C+ C
Sbjct: 265 SALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKC 303
Score = 108 bits (270), Expect = 6e-24
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 6/233 (2%)
Frame = +3
Query: 309 NTFAN-TCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDC 485
N AN +C C+ + + +HE CF C +C + + F + C
Sbjct: 3 NALANASCERCRGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHD 62
Query: 486 YCSAFSSQCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVP 665
+ F+ C CGE ++ R ++ +WH CF C C++ L FV + G H C P
Sbjct: 63 FQMLFAPCCHQCGEFII--GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRP 120
Query: 666 CYENKFAPR-----CARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDP 830
C + A C +C + + + +++ P+H + C C L +
Sbjct: 121 CRNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGEL 179
Query: 831 YCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVG 989
YC+ C ++ P C +C+RPI G+ V+ + WH F CA+C +G
Sbjct: 180 YCLPCHDKMGVPICGACRRPIE----GRVVNAMGKQWHVEHFVCAKCEKPFLG 228
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,064,589
Number of extensions: 1011037
Number of successful extensions: 7119
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 6341
Number of HSP's successfully gapped: 107
Length of query: 425
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 323
Effective length of database: 8,804,438
Effective search space: 2843833474
Effective search space used: 2843833474
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013331
(1275 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034343.2| four and a half LIM domains protein 3 [Mus musc... 608 e-174
Alignment gi|NP_034342.1| four and a half LIM domains protein 2 [Mus musc... 382 e-106
Alignment gi|NP_067293.1| four and a half LIM domains protein 5 [Mus musc... 340 2e-93
Alignment gi|NP_001070830.1| four and a half LIM domains protein 1 isofor... 301 9e-82
Alignment gi|NP_034341.2| four and a half LIM domains protein 1 isoform 3... 299 4e-81
Alignment gi|NP_034344.2| four and a half LIM domains 4 [Mus musculus]. 282 3e-76
Alignment gi|NP_001070829.1| four and a half LIM domains protein 1 isofor... 260 2e-69
Alignment gi|NP_033391.1| transforming growth factor beta-1-induced trans... 121 1e-27
Alignment gi|NP_001177785.1| PDZ and LIM domain protein 5 isoform ENH1d [... 121 1e-27
Alignment gi|NP_001177784.1| PDZ and LIM domain protein 5 isoform ENH1c [... 121 1e-27
>ref|NP_034343.2| four and a half LIM domains protein 3 [Mus musculus].
Length = 289
Score = 608 bits (1567), Expect = e-174
Identities = 270/286 (94%), Positives = 275/286 (96%), Gaps = 9/286 (3%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
MSE FDCAKC+ESLYGRKYIQTD+GPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
Sbjct: 1 MSEAFDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
FHEGCFRCCRCQRSLADEPFTCQDSELLCN+CYC+AFSSQCSACGETVMPGSRKLEYGGQ
Sbjct: 61 FHEGCFRCCRCQRSLADEPFTCQDSELLCNECYCTAFSSQCSACGETVMPGSRKLEYGGQ 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
TWHEHCFLCSGCEQPLGS SFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
Sbjct: 121 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPIT---------GL 902
WHRECLVCTGC+TPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPIT GL
Sbjct: 181 WHRECLVCTGCKTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGGSGGGEGAGL 240
Query: 903 GGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
GGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ
Sbjct: 241 GGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 286
>ref|NP_034342.1| four and a half LIM domains protein 2 [Mus musculus].
Length = 279
Score = 382 bits (980), Expect = e-106
Identities = 150/277 (54%), Positives = 208/277 (75%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
M+E FDC C+ESLYG+KYI + P+CV C++ +ANTC EC IG D ++L Y+DRH
Sbjct: 1 MTERFDCHHCNESLYGKKYILKEENPHCVACFEELYANTCEECGTPIGCDCKDLSYKDRH 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+HEGCF C RC SL D+PF ++ +LLC DCY + +SS+C C +T+MPG+RK+EY G
Sbjct: 61 WHEGCFHCSRCGSSLVDKPFAAKEEQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
+WHE CF C C+QP+G+ SF+P + ++CVPCYE ++A +C +C K +T GGVTYR+QP
Sbjct: 121 SWHETCFTCQRCQQPIGTKSFIPKENQNFCVPCYEKQYALQCVQCKKPITTGGVTYREQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 929
WH+EC VCT C+ L+GQ+FT+RD+ PYC+ CF +L+A KC+ C PI+GLGG KY+SFE
Sbjct: 181 WHKECFVCTACKKQLSGQRFTARDEFPYCLTCFCDLYAKKCAGCTNPISGLGGTKYISFE 240
Query: 930 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
+R WH+ CF+C +CS SLVG+GF+ + D +LC C +
Sbjct: 241 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGK 277
>ref|NP_067293.1| four and a half LIM domains protein 5 [Mus musculus].
Length = 284
Score = 340 bits (871), Expect = 2e-93
Identities = 133/274 (48%), Positives = 190/274 (69%)
Frame = +3
Query: 213 SETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHF 392
S FDC C+ SL G+KY+ D+ YC+ CYD F+N C +C++ I DS++L Y++RH+
Sbjct: 3 SSQFDCQYCTSSLIGKKYVLKDDNLYCISCYDRIFSNYCEQCKEPIESDSKDLCYKNRHW 62
Query: 393 HEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQT 572
HEGCFRC +C SL ++PF +D LLC DCY + SS+C C T+MPGSRK+E+ G
Sbjct: 63 HEGCFRCNKCHHSLVEKPFVAKDDRLLCTDCYSNECSSKCFHCKRTIMPGSRKMEFKGNY 122
Query: 573 WHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPW 752
WHE CF+C C QP+G+ + + +YCVPC+E +FA C C K +T GG+T+RDQ W
Sbjct: 123 WHETCFVCEHCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFRDQIW 182
Query: 753 HRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFED 932
H+EC +C+GC+ L + F S+DD P+C+ C+ L+A KC++C +PITGL G K++ F+D
Sbjct: 183 HKECFLCSGCRKELYEEAFMSKDDFPFCLDCYNHLYAKKCAACTKPITGLRGAKFICFQD 242
Query: 933 RHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
R WH CF+C +CS SLVG+GF+ ++LC+ C
Sbjct: 243 RQWHSECFNCGKCSVSLVGEGFLTHNMEILCRKC 276
>ref|NP_001070830.1| four and a half LIM domains protein 1 isoform 2 [Mus musculus].
Length = 296
Score = 301 bits (770), Expect = 9e-82
Identities = 125/279 (44%), Positives = 175/279 (62%), Gaps = 1/279 (0%)
Frame = +3
Query: 207 TMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDR 386
TMSE FDC C + L G+KY+Q D C+ C+D ANTC +C++ I D++E+ Y++R
Sbjct: 16 TMSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVDCRKPISADAKEVHYKNR 75
Query: 387 HFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGG 566
++H+ CFRC +C LA E F +D ++LCN C S +C C + ++ G + +EY G
Sbjct: 76 YWHDNCFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGDQNVEYKG 135
Query: 567 QTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQ 746
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K +T GG+TY+DQ
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQ 195
Query: 747 PWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLG-GGKYVS 923
PWH EC VC C LAGQ+FT+ +D YCV C+ A KC+ CK PITG G G V+
Sbjct: 196 PWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVA 255
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
+E + WH CF C +CS +L + FV +QV C C++
Sbjct: 256 YEGQSWHDYCFHCKKCSVNLANKRFVFHNEQVYCPDCAK 294
Score = 102 bits (253), Expect = 8e-22
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 3/159 (1%)
Frame = +3
Query: 201 TATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYE 380
T + F C+ C + + + YCV C++ FA C +C + I S + Y+
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAI--TSGGITYQ 193
Query: 381 DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM---PGSRK 551
D+ +H CF C C + LA + FT + + C DCY + + +C+ C + GS
Sbjct: 194 DQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSV 253
Query: 552 LEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPC 668
+ Y GQ+WH++CF C C L + FV YC C
Sbjct: 254 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHNEQVYCPDC 292
>ref|NP_034341.2| four and a half LIM domains protein 1 isoform 3 [Mus musculus].
Length = 280
Score = 299 bits (765), Expect = 4e-81
Identities = 124/278 (44%), Positives = 174/278 (62%), Gaps = 1/278 (0%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
MSE FDC C + L G+KY+Q D C+ C+D ANTC +C++ I D++E+ Y++R+
Sbjct: 1 MSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVDCRKPISADAKEVHYKNRY 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+H+ CFRC +C LA E F +D ++LCN C S +C C + ++ G + +EY G
Sbjct: 61 WHDNCFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGDQNVEYKGT 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K +T GG+TY+DQP
Sbjct: 121 VWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLG-GGKYVSF 926
WH EC VC C LAGQ+FT+ +D YCV C+ A KC+ CK PITG G G V++
Sbjct: 181 WHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVAY 240
Query: 927 EDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
E + WH CF C +CS +L + FV +QV C C++
Sbjct: 241 EGQSWHDYCFHCKKCSVNLANKRFVFHNEQVYCPDCAK 278
Score = 102 bits (253), Expect = 8e-22
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 3/159 (1%)
Frame = +3
Query: 201 TATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYE 380
T + F C+ C + + + YCV C++ FA C +C + I S + Y+
Sbjct: 120 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAI--TSGGITYQ 177
Query: 381 DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM---PGSRK 551
D+ +H CF C C + LA + FT + + C DCY + + +C+ C + GS
Sbjct: 178 DQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSV 237
Query: 552 LEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPC 668
+ Y GQ+WH++CF C C L + FV YC C
Sbjct: 238 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHNEQVYCPDC 276
>ref|NP_034344.2| four and a half LIM domains 4 [Mus musculus].
Length = 279
Score = 282 bits (722), Expect = 3e-76
Identities = 120/278 (43%), Positives = 165/278 (59%), Gaps = 1/278 (0%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
MSE F C C ESL G+KY+Q D YCV C+D+ AN C EC + IG DS+E+ Y+++
Sbjct: 1 MSE-FKCHHCEESLQGKKYVQKDGANYCVTCFDSHCANICQECHKPIGADSKEVCYKEQF 59
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+H CF+C +C + LA E F D +LCN C +C C + + G +EY G
Sbjct: 60 WHNTCFKCSKCSQLLATETFVAWDKNILCNKCATRVTFPKCKGCLKDIEEGDHNVEYKGS 119
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
WH++CF+C+ C+ +G+ +F P YCV CY+ F C +C K +T GGV+Y+DQP
Sbjct: 120 IWHKNCFVCTNCKDIIGTKNFFPKDEGFYCVTCYDALFTKHCMKCKKPITSGGVSYQDQP 179
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLG-GGKYVSF 926
WH EC VC C L+GQ+FT+ DD +CV C+ A KC+ CK PITG G G V+
Sbjct: 180 WHSECFVCVSCSKELSGQRFTAMDDQYFCVDCYKNYIAKKCAGCKNPITGFGKGANVVAH 239
Query: 927 EDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
E WH CF+C CS +L + FV +QV C C++
Sbjct: 240 EQNSWHDYCFNCKTCSVNLANKHFVFHDEQVYCPDCAR 277
Score = 102 bits (255), Expect = 5e-22
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 3/155 (1%)
Frame = +3
Query: 222 FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEG 401
F C C + + + + D G YCV CYD F C +C++ I S + Y+D+ +H
Sbjct: 126 FVCTNCKDIIGTKNFFPKDEGFYCVTCYDALFTKHCMKCKKPI--TSGGVSYQDQPWHSE 183
Query: 402 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM---PGSRKLEYGGQT 572
CF C C + L+ + FT D + C DCY + + +C+ C + G+ + + +
Sbjct: 184 CFVCVSCSKELSGQRFTAMDDQYFCVDCYKNYIAKKCAGCKNPITGFGKGANVVAHEQNS 243
Query: 573 WHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYEN 677
WH++CF C C L + FV YC C N
Sbjct: 244 WHDYCFNCKTCSVNLANKHFVFHDEQVYCPDCARN 278
>ref|NP_001070829.1| four and a half LIM domains protein 1 isoform 1 [Mus musculus].
Length = 323
Score = 260 bits (664), Expect = 2e-69
Identities = 106/230 (46%), Positives = 147/230 (63%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
MSE FDC C + L G+KY+Q D C+ C+D ANTC +C++ I D++E+ Y++R+
Sbjct: 1 MSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVDCRKPISADAKEVHYKNRY 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+H+ CFRC +C LA E F +D ++LCN C S +C C + ++ G + +EY G
Sbjct: 61 WHDNCFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGDQNVEYKGT 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K +T GG+TY+DQP
Sbjct: 121 VWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITG 899
WH EC VC C LAGQ+FT+ +D YCV C+ A KC+ CK PITG
Sbjct: 181 WHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITG 230
Score = 144 bits (363), Expect = 1e-34
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 2/212 (0%)
Frame = +3
Query: 405 FRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHEH 584
F C C+ L + + +D C C+ ++ C C + + ++++ Y + WH++
Sbjct: 5 FDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVDCRKPISADAKEVHYKNRYWHDN 64
Query: 585 CFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQG--GVTYRDQPWHR 758
CF C+ C PL S +FV G C C + +PRC C K + G V Y+ WH+
Sbjct: 65 CFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGDQNVEYKGTVWHK 124
Query: 759 ECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRH 938
+C C+ C+ + F + +D YCV C FA C C + IT G ++++D+
Sbjct: 125 DCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGG----ITYQDQP 180
Query: 939 WHHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
WH CF C CS L GQ F DQ C C
Sbjct: 181 WHAECFVCVTCSKKLAGQRFTAVEDQYYCVDC 212
Score = 97.8 bits (242), Expect = 2e-20
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Frame = +3
Query: 588 FLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGG--VTYRDQPWHRE 761
F C C PL +V G H C+ C++ A C C K ++ V Y+++ WH
Sbjct: 5 FDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVDCRKPISADAKEVHYKNRYWHDN 64
Query: 762 CLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRHW 941
C C C PLA + F S+D C C +P+C C + I + G + V ++ W
Sbjct: 65 CFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAI--VAGDQNVEYKGTVW 122
Query: 942 HHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
H CF+C+ C + F P G+ C C +
Sbjct: 123 HKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHE 155
Score = 72.4 bits (176), Expect = 7e-13
Identities = 31/107 (28%), Positives = 52/107 (48%)
Frame = +3
Query: 201 TATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYE 380
T + F C+ C + + + YCV C++ FA C +C + I S + Y+
Sbjct: 120 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAI--TSGGITYQ 177
Query: 381 DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSAC 521
D+ +H CF C C + LA + FT + + C DCY + + +C+ C
Sbjct: 178 DQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGC 224
>ref|NP_033391.1| transforming growth factor beta-1-induced transcript 1 protein [Mus
musculus].
Length = 444
Score = 121 bits (304), Expect = 1e-27
Identities = 59/173 (34%), Positives = 79/173 (45%)
Frame = +3
Query: 510 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAP 689
C +C + + + + G+ WH FLCSGC LG SF GA +C CY +F+P
Sbjct: 211 CGSCNKPI--AGQVVTALGRAWHPEHFLCSGCSTTLGGSSFFEKDGAPFCPECYFERFSP 268
Query: 690 RCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPK 869
RC C++ + VT WH E C C P + F R+ PYC F +LFAP+
Sbjct: 269 RCGFCNQPIRHKMVTALGTHWHPEHFCCVSCGEPFGEEGFHEREGRPYCRRDFLQLFAPR 328
Query: 870 CSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQ 1028
C C+ PI Y+S WH CF C C G F + LC+
Sbjct: 329 CQGCQGPIL----DNYISALSALWHPDCFVCRECLAPFSGGSFFEHEGRPLCE 377
Score = 113 bits (282), Expect = 4e-25
Identities = 62/217 (28%), Positives = 87/217 (40%)
Frame = +3
Query: 384 RHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYG 563
R +H F C C +L F +D C +CY FS +C C + + + +
Sbjct: 228 RAWHPEHFLCSGCSTTLGGSSFFEKDGAPFCPECYFERFSPRCGFCNQPIR--HKMVTAL 285
Query: 564 GQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRD 743
G WH F C C +P G F +G YC + FAPRC C + ++
Sbjct: 286 GTHWHPEHFCCVSCGEPFGEEGFHEREGRPYCRRDFLQLFAPRCQGCQGPILDNYISALS 345
Query: 744 QPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVS 923
WH +C VC C P +G F + P C F C++C P+T G+ VS
Sbjct: 346 ALWHPDCFVCRECLAPFSGGSFFEHEGRPLCENHFHAQRGSLCATCGLPVT----GRCVS 401
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
R +H F+C C L F + CQ C
Sbjct: 402 ALGRRFHPDHFTCTFCLRPLTKGSFQERASKPYCQPC 438
Score = 108 bits (271), Expect = 7e-24
Identities = 60/215 (27%), Positives = 88/215 (40%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFH 395
E F C+ CS +L G + + D P+C CY F+ C C Q I H + + H+H
Sbjct: 233 EHFLCSGCSTTLGGSSFFEKDGAPFCPECYFERFSPRCGFCNQPIRH--KMVTALGTHWH 290
Query: 396 EGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTW 575
F C C +E F ++ C + F+ +C C ++ + W
Sbjct: 291 PEHFCCVSCGEPFGEEGFHEREGRPYCRRDFLQLFAPRCQGCQGPIL--DNYISALSALW 348
Query: 576 HEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPWH 755
H CF+C C P SF +G C + + CA C +T V+ + +H
Sbjct: 349 HPDCFVCRECLAPFSGGSFFEHEGRPLCENHFHAQRGSLCATCGLPVTGRCVSALGRRFH 408
Query: 756 RECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELF 860
+ CT C PL F R PYC CF +LF
Sbjct: 409 PDHFTCTFCLRPLTKGSFQERASKPYCQPCFLKLF 443
>ref|NP_001177785.1| PDZ and LIM domain protein 5 isoform ENH1d [Mus musculus].
Length = 574
Score = 121 bits (303), Expect = 1e-27
Identities = 56/155 (36%), Positives = 75/155 (48%)
Frame = +3
Query: 564 GQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRD 743
G++WH F C+ C+ + FV +KGA YC CYE FAP C RC + + +
Sbjct: 414 GKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINALK 473
Query: 744 QPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVS 923
Q WH C VC C P+ F D +PYC + LF C C+ PI G ++
Sbjct: 474 QTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCEFPIE--AGDMFLE 531
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQ 1028
WH +CF C+ C SL GQ F D+ LC+
Sbjct: 532 ALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLCK 566
Score = 88.2 bits (217), Expect = 1e-17
Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 5/207 (2%)
Frame = +3
Query: 54 AAGSLAGSSLGPARPGPQ---VGAAEGRGPGCXXXXXXXXXXXXXXXFEGSITATMS-ET 221
A S G+S+GP +P Q V AE G F ++ + E
Sbjct: 362 ARSSGTGASVGPPQPSDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEE 421
Query: 222 FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQ-LIGHDSRELFYEDRHFHE 398
F+CA C ++ +++ YC CY+ FA C CQ+ ++G L + +H
Sbjct: 422 FNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINAL---KQTWHV 478
Query: 399 GCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWH 578
CF C C + + + F +D E C Y + F + C C + G LE G TWH
Sbjct: 479 SCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGYTWH 538
Query: 579 EHCFLCSGCEQPLGSCSFVPDKGAHYC 659
+ CF+CS C + L +F K C
Sbjct: 539 DTCFVCSVCCESLEGQTFFSKKDKPLC 565
Score = 66.6 bits (161), Expect = 4e-11
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Frame = +3
Query: 678 KFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGEL 857
K P CA C++ + + + WH E C C+ +A F YC C+ +
Sbjct: 393 KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKF 452
Query: 858 FAPKCSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGF-VPDGDQ------ 1016
FAP+C C+R I G+ ++ + WH SCF C C + F + DG+
Sbjct: 453 FAPECGRCQRKIL----GEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDY 508
Query: 1017 -----VLCQGC 1034
+C+GC
Sbjct: 509 YALFGTICRGC 519
>ref|NP_001177784.1| PDZ and LIM domain protein 5 isoform ENH1c [Mus musculus].
Length = 526
Score = 121 bits (303), Expect = 1e-27
Identities = 56/155 (36%), Positives = 75/155 (48%)
Frame = +3
Query: 564 GQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRD 743
G++WH F C+ C+ + FV +KGA YC CYE FAP C RC + + +
Sbjct: 366 GKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINALK 425
Query: 744 QPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVS 923
Q WH C VC C P+ F D +PYC + LF C C+ PI G ++
Sbjct: 426 QTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCEFPIE--AGDMFLE 483
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQ 1028
WH +CF C+ C SL GQ F D+ LC+
Sbjct: 484 ALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLCK 518
Score = 88.2 bits (217), Expect = 1e-17
Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 5/207 (2%)
Frame = +3
Query: 54 AAGSLAGSSLGPARPGPQ---VGAAEGRGPGCXXXXXXXXXXXXXXXFEGSITATMS-ET 221
A S G+S+GP +P Q V AE G F ++ + E
Sbjct: 314 ARSSGTGASVGPPQPSDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEE 373
Query: 222 FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQ-LIGHDSRELFYEDRHFHE 398
F+CA C ++ +++ YC CY+ FA C CQ+ ++G L + +H
Sbjct: 374 FNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINAL---KQTWHV 430
Query: 399 GCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWH 578
CF C C + + + F +D E C Y + F + C C + G LE G TWH
Sbjct: 431 SCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGYTWH 490
Query: 579 EHCFLCSGCEQPLGSCSFVPDKGAHYC 659
+ CF+CS C + L +F K C
Sbjct: 491 DTCFVCSVCCESLEGQTFFSKKDKPLC 517
Score = 66.6 bits (161), Expect = 4e-11
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Frame = +3
Query: 678 KFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGEL 857
K P CA C++ + + + WH E C C+ +A F YC C+ +
Sbjct: 345 KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKF 404
Query: 858 FAPKCSSCKRPITGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGF-VPDGDQ------ 1016
FAP+C C+R I G+ ++ + WH SCF C C + F + DG+
Sbjct: 405 FAPECGRCQRKIL----GEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDY 460
Query: 1017 -----VLCQGC 1034
+C+GC
Sbjct: 461 YALFGTICRGC 471
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,610,755
Number of extensions: 1311664
Number of successful extensions: 9804
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 8374
Number of HSP's successfully gapped: 221
Length of query: 425
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 321
Effective length of database: 12,493,815
Effective search space: 4010514615
Effective search space used: 4010514615
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013331
(1275 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004459.2| four and a half LIM domains protein 3 isoform 1... 615 e-176
Alignment gi|NP_001230807.1| four and a half LIM domains protein 3 isofor... 378 e-105
Alignment gi|NP_001034581.1| four and a half LIM domains protein 2 [Homo ... 378 e-105
Alignment gi|NP_963851.2| four and a half LIM domains protein 2 [Homo sap... 378 e-105
Alignment gi|NP_963849.1| four and a half LIM domains protein 2 [Homo sap... 378 e-105
Alignment gi|NP_001441.4| four and a half LIM domains protein 2 [Homo sap... 378 e-105
Alignment gi|NP_001164278.1| four and a half LIM domains protein 5 [Homo ... 339 4e-93
Alignment gi|NP_065228.4| four and a half LIM domains protein 5 [Homo sap... 339 4e-93
Alignment gi|NP_001153173.1| four and a half LIM domains protein 1 isofor... 301 7e-82
Alignment gi|NP_001153171.1| four and a half LIM domains protein 1 isofor... 301 7e-82
>ref|NP_004459.2| four and a half LIM domains protein 3 isoform 1 [Homo sapiens].
Length = 280
Score = 615 bits (1587), Expect = e-176
Identities = 270/277 (97%), Positives = 275/277 (99%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
MSE+FDCAKC+ESLYGRKYIQTD+GPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
Sbjct: 1 MSESFDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
Sbjct: 61 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
TWHEHCFLCSGCEQPLGS SFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
Sbjct: 121 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 929
WHRECLVCTGCQTPLAGQQFTSRD+DPYCVACFGELFAPKCSSCKRPI GLGGGKYVSFE
Sbjct: 181 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFE 240
Query: 930 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
DRHWHH+CFSCARCSTSLVGQGFVPDGDQVLCQGCSQ
Sbjct: 241 DRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 277
>ref|NP_001230807.1| four and a half LIM domains protein 3 isoform 2 [Homo sapiens].
Length = 172
Score = 378 bits (970), Expect = e-105
Identities = 165/169 (97%), Positives = 167/169 (98%)
Frame = +3
Query: 534 MPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKT 713
MPGSRKLEYGGQTWHEHCFLCSGCEQPLGS SFVPDKGAHYCVPCYENKFAPRCARCSKT
Sbjct: 1 MPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKT 60
Query: 714 LTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPI 893
LTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRD+DPYCVACFGELFAPKCSSCKRPI
Sbjct: 61 LTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPI 120
Query: 894 TGLGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
GLGGGKYVSFEDRHWHH+CFSCARCSTSLVGQGFVPDGDQVLCQGCSQ
Sbjct: 121 VGLGGGKYVSFEDRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 169
Score = 123 bits (308), Expect = 4e-28
Identities = 56/166 (33%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Frame = +3
Query: 360 SRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMP 539
SR+L Y + +HE CF C C++ L F C CY + F+ +C+ C +T+
Sbjct: 4 SRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQ 63
Query: 540 GSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLT 719
G + Y Q WH C +C+GC+ PL F YCV C+ FAP+C+ C + +
Sbjct: 64 GG--VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIV 121
Query: 720 QGG----VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVAC 845
G V++ D+ WH C C C T L GQ F D C C
Sbjct: 122 GLGGGKYVSFEDRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGC 167
Score = 107 bits (267), Expect = 2e-23
Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Frame = +3
Query: 222 FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEG 401
F C+ C + L R ++ YCVPCY+N FA CA C + + + Y D+ +H
Sbjct: 19 FLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGG--VTYRDQPWHRE 76
Query: 402 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETV--MPGSRKLEYGGQTW 575
C C CQ LA + FT +D + C C+ F+ +CS+C + + G + + + + W
Sbjct: 77 CLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFEDRHW 136
Query: 576 HEHCFLCSGCEQPLGSCSFVPDKGAHYCVPC 668
H +CF C+ C L FVPD C C
Sbjct: 137 HHNCFSCARCSTSLVGQGFVPDGDQVLCQGC 167
Score = 75.1 bits (183), Expect = 1e-13
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQ-LIG-HDSRELFYEDRH 389
E C C L G+++ D PYCV C+ FA C+ C++ ++G + + +EDRH
Sbjct: 76 ECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFEDRH 135
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDC 485
+H CF C RC SL + F ++LC C
Sbjct: 136 WHHNCFSCARCSTSLVGQGFVPDGDQVLCQGC 167
>ref|NP_001034581.1| four and a half LIM domains protein 2 [Homo sapiens].
Length = 279
Score = 378 bits (970), Expect = e-105
Identities = 149/277 (53%), Positives = 207/277 (74%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
M+E FDC C+ESL+G+KYI + PYCV C++ FANTC EC + IG D ++L Y+DRH
Sbjct: 1 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+HE CF C +C+ SL D+PF ++ +LLC DCY + +SS+C C +T+MPG+RK+EY G
Sbjct: 61 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
+WHE CF+C C+QP+G+ SF+P ++CVPCYE + A +C +C K +T GGVTYR+QP
Sbjct: 121 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 929
WH+EC VCT C+ L+GQ+FT+RDD YC+ CF +L+A KC+ C PI+GLGG KY+SFE
Sbjct: 181 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE 240
Query: 930 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
+R WH+ CF+C +CS SLVG+GF+ + D +LC C +
Sbjct: 241 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGK 277
>ref|NP_963851.2| four and a half LIM domains protein 2 [Homo sapiens].
Length = 279
Score = 378 bits (970), Expect = e-105
Identities = 149/277 (53%), Positives = 207/277 (74%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
M+E FDC C+ESL+G+KYI + PYCV C++ FANTC EC + IG D ++L Y+DRH
Sbjct: 1 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+HE CF C +C+ SL D+PF ++ +LLC DCY + +SS+C C +T+MPG+RK+EY G
Sbjct: 61 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
+WHE CF+C C+QP+G+ SF+P ++CVPCYE + A +C +C K +T GGVTYR+QP
Sbjct: 121 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 929
WH+EC VCT C+ L+GQ+FT+RDD YC+ CF +L+A KC+ C PI+GLGG KY+SFE
Sbjct: 181 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE 240
Query: 930 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
+R WH+ CF+C +CS SLVG+GF+ + D +LC C +
Sbjct: 241 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGK 277
>ref|NP_963849.1| four and a half LIM domains protein 2 [Homo sapiens].
Length = 279
Score = 378 bits (970), Expect = e-105
Identities = 149/277 (53%), Positives = 207/277 (74%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
M+E FDC C+ESL+G+KYI + PYCV C++ FANTC EC + IG D ++L Y+DRH
Sbjct: 1 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+HE CF C +C+ SL D+PF ++ +LLC DCY + +SS+C C +T+MPG+RK+EY G
Sbjct: 61 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
+WHE CF+C C+QP+G+ SF+P ++CVPCYE + A +C +C K +T GGVTYR+QP
Sbjct: 121 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 929
WH+EC VCT C+ L+GQ+FT+RDD YC+ CF +L+A KC+ C PI+GLGG KY+SFE
Sbjct: 181 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE 240
Query: 930 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
+R WH+ CF+C +CS SLVG+GF+ + D +LC C +
Sbjct: 241 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGK 277
>ref|NP_001441.4| four and a half LIM domains protein 2 [Homo sapiens].
Length = 279
Score = 378 bits (970), Expect = e-105
Identities = 149/277 (53%), Positives = 207/277 (74%)
Frame = +3
Query: 210 MSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH 389
M+E FDC C+ESL+G+KYI + PYCV C++ FANTC EC + IG D ++L Y+DRH
Sbjct: 1 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH 60
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ 569
+HE CF C +C+ SL D+PF ++ +LLC DCY + +SS+C C +T+MPG+RK+EY G
Sbjct: 61 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS 120
Query: 570 TWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP 749
+WHE CF+C C+QP+G+ SF+P ++CVPCYE + A +C +C K +T GGVTYR+QP
Sbjct: 121 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP 180
Query: 750 WHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFE 929
WH+EC VCT C+ L+GQ+FT+RDD YC+ CF +L+A KC+ C PI+GLGG KY+SFE
Sbjct: 181 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE 240
Query: 930 DRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
+R WH+ CF+C +CS SLVG+GF+ + D +LC C +
Sbjct: 241 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGK 277
>ref|NP_001164278.1| four and a half LIM domains protein 5 [Homo sapiens].
Length = 284
Score = 339 bits (869), Expect = 4e-93
Identities = 133/271 (49%), Positives = 186/271 (68%)
Frame = +3
Query: 222 FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEG 401
F C C+ SL G+KY+ D+ PYCV CYD F+N C EC++ I DS++L Y+DRH+HEG
Sbjct: 6 FYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDRHWHEG 65
Query: 402 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHE 581
CF+C +C SL ++PF +D LLC +CY + SS+C C T+MPGSRK+E+ G WHE
Sbjct: 66 CFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHE 125
Query: 582 HCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRE 761
CF+C C QP+G+ + + +YCVPC+E +FA C C K +T GG+T+ DQ WH+E
Sbjct: 126 TCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQLWHKE 185
Query: 762 CLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRHW 941
C +C+GC+ L +QF SRDD P+CV C+ L+A KC +C +PI+GL G K++ F+D W
Sbjct: 186 CFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICFQDSQW 245
Query: 942 HHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
H CF+C +CS SLVG+GF+ ++ CQ C
Sbjct: 246 HSECFNCGKCSVSLVGKGFLTQNKEIFCQKC 276
Score = 70.5 bits (171), Expect = 3e-12
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIG--HDSRELFYEDRH 389
E F C+ C + L +++ D+ P+CV CY++ +AN C C + I ++ + ++D
Sbjct: 185 ECFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICFQDSQ 244
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDC 485
+H CF C +C SL + F Q+ E+ C C
Sbjct: 245 WHSECFNCGKCSVSLVGKGFLTQNKEIFCQKC 276
>ref|NP_065228.4| four and a half LIM domains protein 5 [Homo sapiens].
Length = 284
Score = 339 bits (869), Expect = 4e-93
Identities = 133/271 (49%), Positives = 186/271 (68%)
Frame = +3
Query: 222 FDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEG 401
F C C+ SL G+KY+ D+ PYCV CYD F+N C EC++ I DS++L Y+DRH+HEG
Sbjct: 6 FYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDRHWHEG 65
Query: 402 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHE 581
CF+C +C SL ++PF +D LLC +CY + SS+C C T+MPGSRK+E+ G WHE
Sbjct: 66 CFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHE 125
Query: 582 HCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRE 761
CF+C C QP+G+ + + +YCVPC+E +FA C C K +T GG+T+ DQ WH+E
Sbjct: 126 TCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQLWHKE 185
Query: 762 CLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLGGGKYVSFEDRHW 941
C +C+GC+ L +QF SRDD P+CV C+ L+A KC +C +PI+GL G K++ F+D W
Sbjct: 186 CFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICFQDSQW 245
Query: 942 HHSCFSCARCSTSLVGQGFVPDGDQVLCQGC 1034
H CF+C +CS SLVG+GF+ ++ CQ C
Sbjct: 246 HSECFNCGKCSVSLVGKGFLTQNKEIFCQKC 276
Score = 70.5 bits (171), Expect = 3e-12
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = +3
Query: 216 ETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIG--HDSRELFYEDRH 389
E F C+ C + L +++ D+ P+CV CY++ +AN C C + I ++ + ++D
Sbjct: 185 ECFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICFQDSQ 244
Query: 390 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDC 485
+H CF C +C SL + F Q+ E+ C C
Sbjct: 245 WHSECFNCGKCSVSLVGKGFLTQNKEIFCQKC 276
>ref|NP_001153173.1| four and a half LIM domains protein 1 isoform 3 [Homo sapiens].
Length = 309
Score = 301 bits (772), Expect = 7e-82
Identities = 126/279 (45%), Positives = 177/279 (63%), Gaps = 1/279 (0%)
Frame = +3
Query: 207 TMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDR 386
TM+E FDC C + L G+KY+Q D C+ C+D ANTC EC++ IG DS+E+ Y++R
Sbjct: 29 TMAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNR 88
Query: 387 HFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGG 566
+H+ CFRC +C LA+E F +D+++LCN C S +C C + ++ G + +EY G
Sbjct: 89 FWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVEYKG 148
Query: 567 QTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQ 746
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K +T GG+TY+DQ
Sbjct: 149 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQ 208
Query: 747 PWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLG-GGKYVS 923
PWH +C VC C LAGQ+FT+ +D YCV C+ A KC+ CK PITG G G V+
Sbjct: 209 PWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVA 268
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
+E + WH CF C +CS +L + FV +QV C C++
Sbjct: 269 YEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 307
Score = 102 bits (255), Expect = 6e-22
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Frame = +3
Query: 201 TATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYE 380
T + F C+ C + + + YCV C++ FA C +C + I S + Y+
Sbjct: 149 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAI--TSGGITYQ 206
Query: 381 DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM---PGSRK 551
D+ +H CF C C + LA + FT + + C DCY + + +C+ C + GS
Sbjct: 207 DQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSV 266
Query: 552 LEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPC 668
+ Y GQ+WH++CF C C L + FV + YC C
Sbjct: 267 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDC 305
>ref|NP_001153171.1| four and a half LIM domains protein 1 isoform 5 [Homo sapiens].
Length = 296
Score = 301 bits (772), Expect = 7e-82
Identities = 126/279 (45%), Positives = 177/279 (63%), Gaps = 1/279 (0%)
Frame = +3
Query: 207 TMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDR 386
TM+E FDC C + L G+KY+Q D C+ C+D ANTC EC++ IG DS+E+ Y++R
Sbjct: 16 TMAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNR 75
Query: 387 HFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGG 566
+H+ CFRC +C LA+E F +D+++LCN C S +C C + ++ G + +EY G
Sbjct: 76 FWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVEYKG 135
Query: 567 QTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQ 746
WH+ CF CS C+Q +G+ SF P YCV C+E KFA C +C+K +T GG+TY+DQ
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQ 195
Query: 747 PWHRECLVCTGCQTPLAGQQFTSRDDDPYCVACFGELFAPKCSSCKRPITGLG-GGKYVS 923
PWH +C VC C LAGQ+FT+ +D YCV C+ A KC+ CK PITG G G V+
Sbjct: 196 PWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVA 255
Query: 924 FEDRHWHHSCFSCARCSTSLVGQGFVPDGDQVLCQGCSQ 1040
+E + WH CF C +CS +L + FV +QV C C++
Sbjct: 256 YEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 294
Score = 102 bits (255), Expect = 6e-22
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Frame = +3
Query: 201 TATMSETFDCAKCSESLYGRKYIQTDNGPYCVPCYDNTFANTCAECQQLIGHDSRELFYE 380
T + F C+ C + + + YCV C++ FA C +C + I S + Y+
Sbjct: 136 TVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAI--TSGGITYQ 193
Query: 381 DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVM---PGSRK 551
D+ +H CF C C + LA + FT + + C DCY + + +C+ C + GS
Sbjct: 194 DQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSV 253
Query: 552 LEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYCVPC 668
+ Y GQ+WH++CF C C L + FV + YC C
Sbjct: 254 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDC 292
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,559,924
Number of extensions: 1576865
Number of successful extensions: 13024
Number of sequences better than 1.0e-05: 105
Number of HSP's gapped: 10726
Number of HSP's successfully gapped: 300
Length of query: 425
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 320
Effective length of database: 14,835,944
Effective search space: 4747502080
Effective search space used: 4747502080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013331
(1275 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 690 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 690 bits (348), Expect = 0.0
Identities = 371/381 (97%)
Strand = Plus / Minus
Query: 895 caggactcggcggaggcaagtatgtgtcctttgaagaccgccactggcaccacagctgct 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86751962 caggactcggcggaggcaagtatgtgtcctttgaagaccgccactggcaccacagctgct 86751903
Query: 955 tctcctgtgcccgctgctccacctccctggtgggtcaaggcttcgtgccggatggagacc 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86751902 tctcctgtgcccgctgctccacctccctggtgggtcaaggcttcgtgccggatggagacc 86751843
Query: 1015 aagtgctgtgccagggttgcagccaggcagggccctgagccagggctcctgggcccaggc 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86751842 aagtgctgtgccagggttgcagccaggcagggccctgagccagggctcctgggcccaggc 86751783
Query: 1075 cctcccataccagggctccaggactaaggctcctcttccagaacacctctgggtcccagc 1134
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 86751782 cctcccataccagggctccaggactaaggctcctcttccagaccacctctgggtcccagc 86751723
Query: 1135 cccgccccaaatggggttccccctaggctccaggattcagcctccccactccaacatccc 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86751722 cccgccccaaatggggttccccctaggctccaggattcagcctccccactccaacatccc 86751663
Query: 1195 caatctggtacctcaggcttaatggagcctccatcatttaaatnnnnnnnaaaccaggac 1254
||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 86751662 caatctggtactccaggcttaatggagcctccatcatttaaatcccccccaaaccaggac 86751603
Query: 1255 cccagaactcagtctatatgg 1275
|||||||||||||||||||||
Sbjct: 86751602 cccagaactcagtctatatgg 86751582
Score = 690 bits (348), Expect = 0.0
Identities = 371/381 (97%)
Strand = Plus / Plus
Query: 895 caggactcggcggaggcaagtatgtgtcctttgaagaccgccactggcaccacagctgct 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86864966 caggactcggcggaggcaagtatgtgtcctttgaagaccgccactggcaccacagctgct 86865025
Query: 955 tctcctgtgcccgctgctccacctccctggtgggtcaaggcttcgtgccggatggagacc 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86865026 tctcctgtgcccgctgctccacctccctggtgggtcaaggcttcgtgccggatggagacc 86865085
Query: 1015 aagtgctgtgccagggttgcagccaggcagggccctgagccagggctcctgggcccaggc 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86865086 aagtgctgtgccagggttgcagccaggcagggccctgagccagggctcctgggcccaggc 86865145
Query: 1075 cctcccataccagggctccaggactaaggctcctcttccagaacacctctgggtcccagc 1134
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 86865146 cctcccataccagggctccaggactaaggctcctcttccagaccacctctgggtcccagc 86865205
Query: 1135 cccgccccaaatggggttccccctaggctccaggattcagcctccccactccaacatccc 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86865206 cccgccccaaatggggttccccctaggctccaggattcagcctccccactccaacatccc 86865265
Query: 1195 caatctggtacctcaggcttaatggagcctccatcatttaaatnnnnnnnaaaccaggac 1254
||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 86865266 caatctggtactccaggcttaatggagcctccatcatttaaatcccccccaaaccaggac 86865325
Query: 1255 cccagaactcagtctatatgg 1275
|||||||||||||||||||||
Sbjct: 86865326 cccagaactcagtctatatgg 86865346
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 1 cttcctcgaggaggggttggggccgcgctcccactcgcccacacagtccgtgtgcagccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86758604 cttcctcgaggaggggttggggccgcgctcccactcgcccacacagtccgtgtgcagccg 86758545
Query: 61 gcagcctagccggtagctcgctcggccccgctcggcctggcccgcaggtaggagccgccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86758544 gcagcctagccggtagctcgctcggccccgctcggcctggcccgcaggtaggagccgccg 86758485
Query: 121 agggacgcggccccggctgcccggccctccctgctcgagcgccgcgcctcgctcccgccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86758484 agggacgcggccccggctgcccggccctccctgctcgagcgccgcgcctcgctcccgccg 86758425
Query: 181 cccgcttcgagg 192
||||||||||||
Sbjct: 86758424 cccgcttcgagg 86758413
Score = 377 bits (190), Expect = e-101
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 709 agacgctgacacagggtggcgtgacgtaccgtgaccaaccctggcatcgagaatgcctgg 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86752273 agacgctgacacagggtggcgtgacgtaccgtgaccaaccctggcatcgagaatgcctgg 86752214
Query: 769 tctgcacagggtgccagacgcccctggcagggcagcagttcacctcccgggacgatgatc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86752213 tctgcacagggtgccagacgcccctggcagggcagcagttcacctcccgggacgatgatc 86752154
Query: 829 cttattgtgtggcctgttttggagaactctttgcacccaagtgcagcagctgcaagcgcc 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86752153 cttattgtgtggcctgttttggagaactctttgcacccaagtgcagcagctgcaagcgcc 86752094
Query: 889 ccatcacagg 898
||||||||||
Sbjct: 86752093 ccatcacagg 86752084
Score = 377 bits (190), Expect = e-101
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 709 agacgctgacacagggtggcgtgacgtaccgtgaccaaccctggcatcgagaatgcctgg 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86864655 agacgctgacacagggtggcgtgacgtaccgtgaccaaccctggcatcgagaatgcctgg 86864714
Query: 769 tctgcacagggtgccagacgcccctggcagggcagcagttcacctcccgggacgatgatc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86864715 tctgcacagggtgccagacgcccctggcagggcagcagttcacctcccgggacgatgatc 86864774
Query: 829 cttattgtgtggcctgttttggagaactctttgcacccaagtgcagcagctgcaagcgcc 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86864775 cttattgtgtggcctgttttggagaactctttgcacccaagtgcagcagctgcaagcgcc 86864834
Query: 889 ccatcacagg 898
||||||||||
Sbjct: 86864835 ccatcacagg 86864844
Score = 351 bits (177), Expect = 6e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 365 ggagctgttttacgaggatcgccacttccacgagggctgtttccgctgctgccgctgcca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86753562 ggagctgttttacgaggatcgccacttccacgagggctgtttccgctgctgccgctgcca 86753503
Query: 425 gcgctccctcgccgacgagcccttcacctgccaggatagcgagctgctctgtaacgactg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86753502 gcgctccctcgccgacgagcccttcacctgccaggatagcgagctgctctgtaacgactg 86753443
Query: 485 ctactgcagcgccttctcctctcagtgctccgcctgcggagagaccgtcatgcctgg 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86753442 ctactgcagcgccttctcctctcagtgctccgcctgcggagagaccgtcatgcctgg 86753386
Score = 351 bits (177), Expect = 6e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 190 agggctccatcacagccaccatgagcgagacctttgactgtgcaaaatgcagcgagtccc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86753825 agggctccatcacagccaccatgagcgagacctttgactgtgcaaaatgcagcgagtccc 86753766
Query: 250 tgtacgggcgcaaatacattcagacggacaacggcccctactgtgtgccctgctatgaca 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86753765 tgtacgggcgcaaatacattcagacggacaacggcccctactgtgtgccctgctatgaca 86753706
Query: 310 acacctttgccaacacgtgcgctgagtgccagcagcttatcgggcatgactcaaggg 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86753705 acacctttgccaacacgtgcgctgagtgccagcagcttatcgggcatgactcaaggg 86753649
Score = 351 bits (177), Expect = 6e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 190 agggctccatcacagccaccatgagcgagacctttgactgtgcaaaatgcagcgagtccc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86863103 agggctccatcacagccaccatgagcgagacctttgactgtgcaaaatgcagcgagtccc 86863162
Query: 250 tgtacgggcgcaaatacattcagacggacaacggcccctactgtgtgccctgctatgaca 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86863163 tgtacgggcgcaaatacattcagacggacaacggcccctactgtgtgccctgctatgaca 86863222
Query: 310 acacctttgccaacacgtgcgctgagtgccagcagcttatcgggcatgactcaaggg 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86863223 acacctttgccaacacgtgcgctgagtgccagcagcttatcgggcatgactcaaggg 86863279
Score = 351 bits (177), Expect = 6e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 365 ggagctgttttacgaggatcgccacttccacgagggctgtttccgctgctgccgctgcca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86863366 ggagctgttttacgaggatcgccacttccacgagggctgtttccgctgctgccgctgcca 86863425
Query: 425 gcgctccctcgccgacgagcccttcacctgccaggatagcgagctgctctgtaacgactg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86863426 gcgctccctcgccgacgagcccttcacctgccaggatagcgagctgctctgtaacgactg 86863485
Query: 485 ctactgcagcgccttctcctctcagtgctccgcctgcggagagaccgtcatgcctgg 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86863486 ctactgcagcgccttctcctctcagtgctccgcctgcggagagaccgtcatgcctgg 86863542
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Minus
Query: 540 gggtcccggaagctggagtacggaggccagacgtggcatgagcactgcttcctgtgcagc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86752569 gggtcccggaagctggagtacggaggccagacgtggcatgagcactgcttcctgtgcagc 86752510
Query: 600 ggctgtgagcagccgctgggctcctgttcctttgtgcccgacaagggtgctcactactgc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86752509 ggctgtgagcagccgctgggctcctgttcctttgtgcccgacaagggtgctcactactgc 86752450
Query: 660 gtgccctgctatgagaacaagttcgcgcctcgctgcgcccgctgcagcaag 710
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86752449 gtgccctgctatgagaacaagttcgcgcctcgctgcgcccgctgcagcaag 86752399
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 540 gggtcccggaagctggagtacggaggccagacgtggcatgagcactgcttcctgtgcagc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86864359 gggtcccggaagctggagtacggaggccagacgtggcatgagcactgcttcctgtgcagc 86864418
Query: 600 ggctgtgagcagccgctgggctcctgttcctttgtgcccgacaagggtgctcactactgc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86864419 ggctgtgagcagccgctgggctcctgttcctttgtgcccgacaagggtgctcactactgc 86864478
Query: 660 gtgccctgctatgagaacaagttcgcgcctcgctgcgcccgctgcagcaag 710
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86864479 gtgccctgctatgagaacaagttcgcgcctcgctgcgcccgctgcagcaag 86864529
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 109 taggagccgccgagggacgcggccccggctgcccggccctccctgctcgagcgccgcgcc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86858435 taggagccgccgagggacgcggccccggctgcccggccctccctgctcgagcgccgcgcc 86858494
Query: 169 tcgctcccgccgcccgcttcgagg 192
||||||||||||||||||||||||
Sbjct: 86858495 tcgctcccgccgcccgcttcgagg 86858518
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,707,258
Number of extensions: 230
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 12
Length of query: 1275
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1254
Effective length of database: 2,808,413,156
Effective search space: 3521750097624
Effective search space used: 3521750097624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)