Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013336
(1025 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538229.2| PREDICTED: similar to solute carrier family 39 ... 303 2e-82
Alignment gi|XP_536012.2| PREDICTED: similar to solute carrier family 39 ... 53 5e-07
>ref|XP_538229.2| PREDICTED: similar to solute carrier family 39 (metal ion
transporter), member 5 [Canis familiaris].
Length = 449
Score = 303 bits (775), Expect = 2e-82
Identities = 158/233 (67%), Positives = 163/233 (69%), Gaps = 2/233 (0%)
Frame = +3
Query: 267 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 446
MGPP+SHLLAGLCV V LG VGGSAPNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPMSHLLAGLCVGVTLGLVGGSAPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARL 60
Query: 447 XHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 626
HSLGLGRVQALRLGHHGPPAGRA PPA DN THR QDPELSVDVWAGLPL PSGW D
Sbjct: 61 LHSLGLGRVQALRLGHHGPPAGRAAPPAGDNYTHRSQDPELSVDVWAGLPLGPSGWSDPE 120
Query: 627 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 806
NEDCLNGSQLLVNFGLSPAAPLTP QF
Sbjct: 121 EPKGPASPHGPAPSGLDLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPHQF 180
Query: 807 ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVTVPWQSCCSAFL--LPSPCS 959
ALLCPALLYQIDSRVCI+AP PTPPGDLLSAL+ S + L LP+P S
Sbjct: 181 ALLCPALLYQIDSRVCIQAPGPTPPGDLLSALI----HSALAVLLLSLPAPLS 229
>ref|XP_536012.2| PREDICTED: similar to solute carrier family 39 (zinc transporter),
member 10 [Canis familiaris].
Length = 511
Score = 52.8 bits (125), Expect = 5e-07
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +3
Query: 735 CLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCI 857
CLN +QLL +G +P++P F LCPALLYQIDSR+CI
Sbjct: 17 CLNVTQLLKYYGHGANSPISPDLFTYLCPALLYQIDSRLCI 57
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,916,768
Number of extensions: 1737918
Number of successful extensions: 10867
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10619
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013336
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013336
(1025 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002687627.1| PREDICTED: solute carrier family 39 (metal i... 312 3e-85
Alignment gi|XP_001790221.1| PREDICTED: solute carrier family 39 (metal i... 312 3e-85
Alignment gi|NP_001192809.1| zinc transporter ZIP10 [Bos taurus]. 49 9e-06
Alignment gi|XP_002685551.1| PREDICTED: solute carrier family 39, member ... 49 9e-06
>ref|XP_002687627.1| PREDICTED: solute carrier family 39 (metal ion transporter), member
5 [Bos taurus].
Length = 541
Score = 312 bits (799), Expect = 3e-85
Identities = 162/233 (69%), Positives = 166/233 (71%), Gaps = 2/233 (0%)
Frame = +3
Query: 267 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 446
MGPP+SHLLAGLCVWVALG V GSAP LGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPMSHLLAGLCVWVALGQVEGSAPYLGPAEQEQNHYLAQLFGLYGENGTLTAAGLARL 60
Query: 447 XHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 626
HSLGLGRVQALRLGHHGPPAGR PPA DNSTHRPQDPELSVDVW GLPLDPSGWGD
Sbjct: 61 LHSLGLGRVQALRLGHHGPPAGRGAPPAGDNSTHRPQDPELSVDVWTGLPLDPSGWGDLA 120
Query: 627 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 806
NEDCLNGSQLLVNFGLSPAAPLTPRQF
Sbjct: 121 ETEAPGPPHGPGPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQF 180
Query: 807 ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVTVPWQSCCSAFL--LPSPCS 959
ALLCPALLYQIDSRVCIRAPAPTP GDLLSAL+ S + L LP+P S
Sbjct: 181 ALLCPALLYQIDSRVCIRAPAPTPSGDLLSALI----HSTLAVLLLSLPAPLS 229
>ref|XP_001790221.1| PREDICTED: solute carrier family 39 (metal ion transporter), member
5 [Bos taurus].
Length = 541
Score = 312 bits (799), Expect = 3e-85
Identities = 162/233 (69%), Positives = 166/233 (71%), Gaps = 2/233 (0%)
Frame = +3
Query: 267 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 446
MGPP+SHLLAGLCVWVALG V GSAP LGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPMSHLLAGLCVWVALGQVEGSAPYLGPAEQEQNHYLAQLFGLYGENGTLTAAGLARL 60
Query: 447 XHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 626
HSLGLGRVQALRLGHHGPPAGR PPA DNSTHRPQDPELSVDVW GLPLDPSGWGD
Sbjct: 61 LHSLGLGRVQALRLGHHGPPAGRGAPPAGDNSTHRPQDPELSVDVWTGLPLDPSGWGDLA 120
Query: 627 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 806
NEDCLNGSQLLVNFGLSPAAPLTPRQF
Sbjct: 121 ETEAPGPPHGPGPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQF 180
Query: 807 ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVTVPWQSCCSAFL--LPSPCS 959
ALLCPALLYQIDSRVCIRAPAPTP GDLLSAL+ S + L LP+P S
Sbjct: 181 ALLCPALLYQIDSRVCIRAPAPTPSGDLLSALI----HSTLAVLLLSLPAPLS 229
>ref|NP_001192809.1| zinc transporter ZIP10 [Bos taurus].
Length = 833
Score = 48.5 bits (114), Expect = 9e-06
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 732 DCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCI 857
+CLN +QLL G +P++ F LCPALLYQIDSR+CI
Sbjct: 338 ECLNVTQLLKYHGHRANSPISSDLFTYLCPALLYQIDSRLCI 379
>ref|XP_002685551.1| PREDICTED: solute carrier family 39, member 4-like [Bos taurus].
Length = 833
Score = 48.5 bits (114), Expect = 9e-06
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 732 DCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCI 857
+CLN +QLL G +P++ F LCPALLYQIDSR+CI
Sbjct: 338 ECLNVTQLLKYHGHRANSPISSDLFTYLCPALLYQIDSRLCI 379
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,073,369
Number of extensions: 1701160
Number of successful extensions: 9976
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9796
Number of HSP's successfully gapped: 4
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013336
(1025 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126313.1| PREDICTED: zinc transporter ZIP5 isoform 2 [... 335 2e-92
Alignment gi|XP_001927736.2| PREDICTED: zinc transporter ZIP5 isoform 1 [... 335 2e-92
>ref|XP_003126313.1| PREDICTED: zinc transporter ZIP5 isoform 2 [Sus scrofa].
Length = 541
Score = 335 bits (860), Expect = 2e-92
Identities = 172/233 (73%), Positives = 174/233 (74%), Gaps = 2/233 (0%)
Frame = +3
Query: 267 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 446
MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARL 60
Query: 447 XHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 626
HSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGD
Sbjct: 61 LHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDLE 120
Query: 627 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 806
NEDCLNGSQLLVNFGLSPAAPLTPRQF
Sbjct: 121 EPEAPAPPHGPAPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQF 180
Query: 807 ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVTVPWQSCCSAFL--LPSPCS 959
ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALV S + L LP+P S
Sbjct: 181 ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALV----HSALAVLLLSLPAPLS 229
>ref|XP_001927736.2| PREDICTED: zinc transporter ZIP5 isoform 1 [Sus scrofa].
Length = 541
Score = 335 bits (860), Expect = 2e-92
Identities = 172/233 (73%), Positives = 174/233 (74%), Gaps = 2/233 (0%)
Frame = +3
Query: 267 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 446
MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARL 60
Query: 447 XHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 626
HSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGD
Sbjct: 61 LHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDLE 120
Query: 627 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 806
NEDCLNGSQLLVNFGLSPAAPLTPRQF
Sbjct: 121 EPEAPAPPHGPAPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQF 180
Query: 807 ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVTVPWQSCCSAFL--LPSPCS 959
ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALV S + L LP+P S
Sbjct: 181 ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALV----HSALAVLLLSLPAPLS 229
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,172,820
Number of extensions: 1107046
Number of successful extensions: 6667
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6534
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013336
(1025 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129709.1| zinc transporter ZIP5 precursor [Mus musculu... 284 7e-77
Alignment gi|NP_082368.1| zinc transporter ZIP5 precursor [Mus musculus]. 284 7e-77
Alignment gi|NP_082327.2| zinc transporter ZIP5 precursor [Mus musculus]. 284 7e-77
Alignment gi|NP_766241.2| zinc transporter ZIP10 precursor [Mus musculus]. 62 9e-10
>ref|NP_001129709.1| zinc transporter ZIP5 precursor [Mus musculus].
Length = 535
Score = 284 bits (727), Expect = 7e-77
Identities = 142/213 (66%), Positives = 150/213 (70%)
Frame = +3
Query: 267 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 446
MGPP+ HLL GLCV VALGWVGGS PNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPVHHLLTGLCVGVALGWVGGSVPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARL 60
Query: 447 XHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 626
HSLGLGRVQ LRLGHH PP GRA P + DN THR Q+PELSVD+WAG+PL PSGWGD
Sbjct: 61 LHSLGLGRVQGLRLGHHEPPTGRAAPTSGDNFTHRLQEPELSVDIWAGMPLGPSGWGD-Q 119
Query: 627 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 806
NEDCLNGSQLLVNFGLSP APLTPRQF
Sbjct: 120 EESKAPDLHGSGPSSLDLFQRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPVAPLTPRQF 179
Query: 807 ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALV 905
ALLCPALLYQIDSRVCI+ PAP PPGD+LSAL+
Sbjct: 180 ALLCPALLYQIDSRVCIKTPAPAPPGDVLSALL 212
>ref|NP_082368.1| zinc transporter ZIP5 precursor [Mus musculus].
Length = 535
Score = 284 bits (727), Expect = 7e-77
Identities = 142/213 (66%), Positives = 150/213 (70%)
Frame = +3
Query: 267 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 446
MGPP+ HLL GLCV VALGWVGGS PNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPVHHLLTGLCVGVALGWVGGSVPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARL 60
Query: 447 XHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 626
HSLGLGRVQ LRLGHH PP GRA P + DN THR Q+PELSVD+WAG+PL PSGWGD
Sbjct: 61 LHSLGLGRVQGLRLGHHEPPTGRAAPTSGDNFTHRLQEPELSVDIWAGMPLGPSGWGD-Q 119
Query: 627 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 806
NEDCLNGSQLLVNFGLSP APLTPRQF
Sbjct: 120 EESKAPDLHGSGPSSLDLFQRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPVAPLTPRQF 179
Query: 807 ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALV 905
ALLCPALLYQIDSRVCI+ PAP PPGD+LSAL+
Sbjct: 180 ALLCPALLYQIDSRVCIKTPAPAPPGDVLSALL 212
>ref|NP_082327.2| zinc transporter ZIP5 precursor [Mus musculus].
Length = 535
Score = 284 bits (727), Expect = 7e-77
Identities = 142/213 (66%), Positives = 150/213 (70%)
Frame = +3
Query: 267 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 446
MGPP+ HLL GLCV VALGWVGGS PNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPVHHLLTGLCVGVALGWVGGSVPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARL 60
Query: 447 XHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 626
HSLGLGRVQ LRLGHH PP GRA P + DN THR Q+PELSVD+WAG+PL PSGWGD
Sbjct: 61 LHSLGLGRVQGLRLGHHEPPTGRAAPTSGDNFTHRLQEPELSVDIWAGMPLGPSGWGD-Q 119
Query: 627 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 806
NEDCLNGSQLLVNFGLSP APLTPRQF
Sbjct: 120 EESKAPDLHGSGPSSLDLFQRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPVAPLTPRQF 179
Query: 807 ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALV 905
ALLCPALLYQIDSRVCI+ PAP PPGD+LSAL+
Sbjct: 180 ALLCPALLYQIDSRVCIKTPAPAPPGDVLSALL 212
>ref|NP_766241.2| zinc transporter ZIP10 precursor [Mus musculus].
Length = 833
Score = 61.6 bits (148), Expect = 9e-10
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +3
Query: 732 DCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCI 857
+CLN +QLL +FGL P +P++P F LCPALLYQIDSR+CI
Sbjct: 338 ECLNVTQLLKHFGLGPNSPISPDLFTYLCPALLYQIDSRLCI 379
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,710,458
Number of extensions: 1367272
Number of successful extensions: 7430
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7317
Number of HSP's successfully gapped: 7
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013336
(1025 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001128667.1| zinc transporter ZIP5 [Homo sapiens]. 301 5e-82
Alignment gi|NP_775867.2| zinc transporter ZIP5 [Homo sapiens]. 301 5e-82
Alignment gi|NP_001120729.1| zinc transporter ZIP10 precursor [Homo sapie... 51 2e-06
Alignment gi|NP_065075.1| zinc transporter ZIP10 precursor [Homo sapiens]. 51 2e-06
>ref|NP_001128667.1| zinc transporter ZIP5 [Homo sapiens].
Length = 540
Score = 301 bits (772), Expect = 5e-82
Identities = 156/234 (66%), Positives = 162/234 (69%), Gaps = 2/234 (0%)
Frame = +3
Query: 264 IMGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXX 443
+MG P+SHLLAG CVWV LGWVGGS PNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MMGSPVSHLLAGFCVWVVLGWVGGSVPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLAR 60
Query: 444 XXHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDX 623
HSLGLGRVQ LRLG HGP GRA PA DNSTHRPQ+PELSVDVWAG+PL PSGWGD
Sbjct: 61 LLHSLGLGRVQGLRLGQHGPLTGRAASPAADNSTHRPQNPELSVDVWAGMPLGPSGWGDL 120
Query: 624 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQ 803
NEDCLNGSQLLVNFGLSPAAPLTPRQ
Sbjct: 121 EESKAPHLPRGPAPSGLDLLHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQ 180
Query: 804 FALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVTVPWQSCCSAFL--LPSPCS 959
FALLCPALLYQIDSRVCI APAP PPGDLLSAL+ QS + L LPSP S
Sbjct: 181 FALLCPALLYQIDSRVCIGAPAPAPPGDLLSALL----QSALAVLLLSLPSPLS 230
>ref|NP_775867.2| zinc transporter ZIP5 [Homo sapiens].
Length = 540
Score = 301 bits (772), Expect = 5e-82
Identities = 156/234 (66%), Positives = 162/234 (69%), Gaps = 2/234 (0%)
Frame = +3
Query: 264 IMGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXX 443
+MG P+SHLLAG CVWV LGWVGGS PNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MMGSPVSHLLAGFCVWVVLGWVGGSVPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLAR 60
Query: 444 XXHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDX 623
HSLGLGRVQ LRLG HGP GRA PA DNSTHRPQ+PELSVDVWAG+PL PSGWGD
Sbjct: 61 LLHSLGLGRVQGLRLGQHGPLTGRAASPAADNSTHRPQNPELSVDVWAGMPLGPSGWGDL 120
Query: 624 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQ 803
NEDCLNGSQLLVNFGLSPAAPLTPRQ
Sbjct: 121 EESKAPHLPRGPAPSGLDLLHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQ 180
Query: 804 FALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVTVPWQSCCSAFL--LPSPCS 959
FALLCPALLYQIDSRVCI APAP PPGDLLSAL+ QS + L LPSP S
Sbjct: 181 FALLCPALLYQIDSRVCIGAPAPAPPGDLLSALL----QSALAVLLLSLPSPLS 230
>ref|NP_001120729.1| zinc transporter ZIP10 precursor [Homo sapiens].
Length = 831
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +3
Query: 726 NEDCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCI 857
+ +CLN +QLL +G +P++ F LCPALLYQIDSR+CI
Sbjct: 334 HHECLNVTQLLKYYGHGANSPISTDLFTYLCPALLYQIDSRLCI 377
>ref|NP_065075.1| zinc transporter ZIP10 precursor [Homo sapiens].
Length = 831
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +3
Query: 726 NEDCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCI 857
+ +CLN +QLL +G +P++ F LCPALLYQIDSR+CI
Sbjct: 334 HHECLNVTQLLKYYGHGANSPISTDLFTYLCPALLYQIDSRLCI 377
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,774,301
Number of extensions: 1683549
Number of successful extensions: 9616
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9413
Number of HSP's successfully gapped: 4
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013336
(1025 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 682 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 682 bits (344), Expect = 0.0
Identities = 344/344 (100%)
Strand = Plus / Minus
Query: 208 aggatgctccgagagcagtagaagcctgaaccagagcctctaaccctgtccccccaataa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034957 aggatgctccgagagcagtagaagcctgaaccagagcctctaaccctgtccccccaataa 23034898
Query: 268 tggggcccccattgagtcatctgctggctggcctgtgtgtgtgggtggccttgggctggg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034897 tggggcccccattgagtcatctgctggctggcctgtgtgtgtgggtggccttgggctggg 23034838
Query: 328 taggaggctctgctcccaacctgggccctgctgagcaggagcagaaccattacctggccc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034837 taggaggctctgctcccaacctgggccctgctgagcaggagcagaaccattacctggccc 23034778
Query: 388 agctgtttggcctctatggggagaacgggacgctgactgcagggggcctggcacggcttc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034777 agctgtttggcctctatggggagaacgggacgctgactgcagggggcctggcacggcttc 23034718
Query: 448 ttcacagcctgggactaggccgagttcaagcccttcgcctgggacaccacgggcctcccg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034717 ttcacagcctgggactaggccgagttcaagcccttcgcctgggacaccacgggcctcccg 23034658
Query: 508 ctggtcgggctacacccccagctgaagacaattccacccacagg 551
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034657 ctggtcgggctacacccccagctgaagacaattccacccacagg 23034614
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 549 aggccacaggaccctgagctgagtgtggatgtctgggcagggctgcctctggatccctca 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034417 aggccacaggaccctgagctgagtgtggatgtctgggcagggctgcctctggatccctca 23034358
Query: 609 gggtggggtgacctggaagagccagaggccccagcaccaccccatgggccggccccctca 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034357 gggtggggtgacctggaagagccagaggccccagcaccaccccatgggccggccccctca 23034298
Query: 669 ggcctgggcctctttcacaggcttctgctgctggaccattcactagctgaccatctgaat 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034297 ggcctgggcctctttcacaggcttctgctgctggaccattcactagctgaccatctgaat 23034238
Query: 729 gaggat 734
||||||
Sbjct: 23034237 gaggat 23034232
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 735 tgtctgaatggctcccagctgctggtcaattttggcctgagccctgctgctcctctgacc 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23033038 tgtctgaatggctcccagctgctggtcaattttggcctgagccctgctgctcctctgacc 23032979
Query: 795 cctcgtcagtttgctctgctgtgtccagccctgctgtatcagattgacagccgtgtctgc 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23032978 cctcgtcagtttgctctgctgtgtccagccctgctgtatcagattgacagccgtgtctgc 23032919
Query: 855 atccgggccccagccccaacgcctccgggggatctactatctg 897
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23032918 atccgggccccagccccaacgcctccgggggatctactatctg 23032876
Score = 226 bits (114), Expect = 2e-56
Identities = 127/130 (97%), Gaps = 1/130 (0%)
Strand = Plus / Minus
Query: 897 gccctggtc-acagtgccctggcagtcctgctgctcagccttcctgctcccctctccctg 955
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23032680 gccctggtccacagtgccctggcagtcctgctgctcagccttcctgctcccctctccctg 23032621
Query: 956 ctcttgctgcggctcctggggactcgtctgttgcagcccctgctgggcttcctgggtgcc 1015
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 23032620 ctcttgctgcggctcctgggacctcgtctgttgcagcccctgctgggcttcctgggtgcc 23032561
Query: 1016 ctggccgtgg 1025
||||||||||
Sbjct: 23032560 ctggccgtgg 23032551
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 86 agcttagggacacctgggtccaatttccccagggagtgtggggatgggggctggagatga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23035902 agcttagggacacctgggtccaatttccccagggagtgtggggatgggggctggagatga 23035843
Query: 146 atggagcctggtgccatatgtgagg 170
|||||||||||||||||||||||||
Sbjct: 23035842 atggagcctggtgccatatgtgagg 23035818
Score = 165 bits (83), Expect = 6e-38
Identities = 86/87 (98%)
Strand = Plus / Minus
Query: 1 tgccagcctcaaccctctggaccaatcgcccccatcagactgtgctcctcaattgtatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23036143 tgccagcctcaaccctctggaccaatcgcccccatcagactgtgctcctcaattgtatac 23036084
Query: 61 caggtgggacatctgaggggagcccag 87
|||||||||||||||| ||||||||||
Sbjct: 23036083 caggtgggacatctgaagggagcccag 23036057
Score = 85.7 bits (43), Expect = 4e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 168 aggaacctcggtgtccacagcaaagcctgatggggacctgagg 210
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23035448 aggaacctcggtgtccacagcaaagcctgatggggacctgagg 23035406
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,177,630
Number of extensions: 295
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 7
Length of query: 1025
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1004
Effective length of database: 2,808,413,156
Effective search space: 2819646808624
Effective search space used: 2819646808624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)