Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013337
(1096 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538229.2| PREDICTED: similar to solute carrier family 39 ... 273 2e-73
Alignment gi|XP_536012.2| PREDICTED: similar to solute carrier family 39 ... 53 6e-07
>ref|XP_538229.2| PREDICTED: similar to solute carrier family 39 (metal ion
transporter), member 5 [Canis familiaris].
Length = 449
Score = 273 bits (698), Expect = 2e-73
Identities = 153/286 (53%), Positives = 155/286 (54%), Gaps = 9/286 (3%)
Frame = +2
Query: 140 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 319
MGPP+SHLLAGLCV V LG VGGSAPNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPMSHLLAGLCVGVTLGLVGGSAPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARL 60
Query: 320 XHSLGLGRVQALRLXXXXXXXXXXXXXXXDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 499
HSLGLGRVQALRL DN THR QDPELSVDVWAGLPL PSGW D
Sbjct: 61 LHSLGLGRVQALRLGHHGPPAGRAAPPAGDNYTHRSQDPELSVDVWAGLPLGPSGWSDPE 120
Query: 500 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 679
NEDCLNGSQLLVNFGLSPAAPLTP QF
Sbjct: 121 EPKGPASPHGPAPSGLDLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPHQF 180
Query: 680 ALLCPALLYQIDSRVCIRAPAPTPPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 859
ALLCPALLYQIDSRVCI+AP PTPPGD
Sbjct: 181 ALLCPALLYQIDSRVCIQAPGPTPPGDLLSALIHSALAVLLLSLPAPLSLLLLRLLGARL 240
Query: 860 XXXXXXXXXXXXVGTLCGDALLHLLPHA---------QGGQHSGSG 970
VGTLCGDALLHLLPH QG H G
Sbjct: 241 LRPLLGFLGALAVGTLCGDALLHLLPHVGRRAARPGHQGHSHGSRG 286
>ref|XP_536012.2| PREDICTED: similar to solute carrier family 39 (zinc transporter),
member 10 [Canis familiaris].
Length = 511
Score = 52.8 bits (125), Expect = 6e-07
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +2
Query: 608 CLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCI 730
CLN +QLL +G +P++P F LCPALLYQIDSR+CI
Sbjct: 17 CLNVTQLLKYYGHGANSPISPDLFTYLCPALLYQIDSRLCI 57
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,460,191
Number of extensions: 1575653
Number of successful extensions: 10535
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10138
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013337
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013337
(1096 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002687627.1| PREDICTED: solute carrier family 39 (metal i... 317 2e-86
Alignment gi|XP_001790221.1| PREDICTED: solute carrier family 39 (metal i... 317 2e-86
>ref|XP_002687627.1| PREDICTED: solute carrier family 39 (metal ion transporter), member 5
[Bos taurus].
Length = 541
Score = 317 bits (811), Expect = 2e-86
Identities = 172/319 (53%), Positives = 178/319 (55%)
Frame = +2
Query: 140 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 319
MGPP+SHLLAGLCVWVALG V GSAP LGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPMSHLLAGLCVWVALGQVEGSAPYLGPAEQEQNHYLAQLFGLYGENGTLTAAGLARL 60
Query: 320 XHSLGLGRVQALRLXXXXXXXXXXXXXXXDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 499
HSLGLGRVQALRL DNSTHRPQDPELSVDVW GLPLDPSGWGD
Sbjct: 61 LHSLGLGRVQALRLGHHGPPAGRGAPPAGDNSTHRPQDPELSVDVWTGLPLDPSGWGDLA 120
Query: 500 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 679
NEDCLNGSQLLVNFGLSPAAPLTPRQF
Sbjct: 121 ETEAPGPPHGPGPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQF 180
Query: 680 ALLCPALLYQIDSRVCIRAPAPTPPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 859
ALLCPALLYQIDSRVCIRAPAPTP GD
Sbjct: 181 ALLCPALLYQIDSRVCIRAPAPTPSGDLLSALIHSTLAVLLLSLPAPLSLLLLRLLGPRL 240
Query: 860 XXXXXXXXXXXXVGTLCGDALLHLLPHAQGGQHSGSGARPEEDXXXXXXXXXXXXXXXXX 1039
VGTLCGDALLHLLPHAQGGQH+G+G +PEED
Sbjct: 241 LRPLLGFLGAVAVGTLCGDALLHLLPHAQGGQHTGAGGQPEEDLGPGLSVLGGLFLLFIL 300
Query: 1040 ENMXXXXXXXXXXPQCCRQ 1096
EN+ P+CC Q
Sbjct: 301 ENVLGLLRRRGRKPRCCGQ 319
>ref|XP_001790221.1| PREDICTED: solute carrier family 39 (metal ion transporter), member 5
[Bos taurus].
Length = 541
Score = 317 bits (811), Expect = 2e-86
Identities = 172/319 (53%), Positives = 178/319 (55%)
Frame = +2
Query: 140 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 319
MGPP+SHLLAGLCVWVALG V GSAP LGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPMSHLLAGLCVWVALGQVEGSAPYLGPAEQEQNHYLAQLFGLYGENGTLTAAGLARL 60
Query: 320 XHSLGLGRVQALRLXXXXXXXXXXXXXXXDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 499
HSLGLGRVQALRL DNSTHRPQDPELSVDVW GLPLDPSGWGD
Sbjct: 61 LHSLGLGRVQALRLGHHGPPAGRGAPPAGDNSTHRPQDPELSVDVWTGLPLDPSGWGDLA 120
Query: 500 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 679
NEDCLNGSQLLVNFGLSPAAPLTPRQF
Sbjct: 121 ETEAPGPPHGPGPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQF 180
Query: 680 ALLCPALLYQIDSRVCIRAPAPTPPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 859
ALLCPALLYQIDSRVCIRAPAPTP GD
Sbjct: 181 ALLCPALLYQIDSRVCIRAPAPTPSGDLLSALIHSTLAVLLLSLPAPLSLLLLRLLGPRL 240
Query: 860 XXXXXXXXXXXXVGTLCGDALLHLLPHAQGGQHSGSGARPEEDXXXXXXXXXXXXXXXXX 1039
VGTLCGDALLHLLPHAQGGQH+G+G +PEED
Sbjct: 241 LRPLLGFLGAVAVGTLCGDALLHLLPHAQGGQHTGAGGQPEEDLGPGLSVLGGLFLLFIL 300
Query: 1040 ENMXXXXXXXXXXPQCCRQ 1096
EN+ P+CC Q
Sbjct: 301 ENVLGLLRRRGRKPRCCGQ 319
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,727,005
Number of extensions: 1544791
Number of successful extensions: 9140
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8925
Number of HSP's successfully gapped: 4
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013337
(1096 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126313.1| PREDICTED: zinc transporter ZIP5 isoform 2 [... 343 1e-94
Alignment gi|XP_001927736.2| PREDICTED: zinc transporter ZIP5 isoform 1 [... 343 1e-94
>ref|XP_003126313.1| PREDICTED: zinc transporter ZIP5 isoform 2 [Sus scrofa].
Length = 541
Score = 343 bits (879), Expect = 1e-94
Identities = 184/319 (57%), Positives = 185/319 (57%)
Frame = +2
Query: 140 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 319
MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARL 60
Query: 320 XHSLGLGRVQALRLXXXXXXXXXXXXXXXDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 499
HSLGLGRVQALRL DNSTHRPQDPELSVDVWAGLPLDPSGWGD
Sbjct: 61 LHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDLE 120
Query: 500 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 679
NEDCLNGSQLLVNFGLSPAAPLTPRQF
Sbjct: 121 EPEAPAPPHGPAPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQF 180
Query: 680 ALLCPALLYQIDSRVCIRAPAPTPPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 859
ALLCPALLYQIDSRVCIRAPAPTPPGD
Sbjct: 181 ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVHSALAVLLLSLPAPLSLLLLRLLGPRL 240
Query: 860 XXXXXXXXXXXXVGTLCGDALLHLLPHAQGGQHSGSGARPEEDXXXXXXXXXXXXXXXXX 1039
VGTLCGDALLHLLPHAQGGQHSGSGARPEED
Sbjct: 241 LQPLLGFLGALAVGTLCGDALLHLLPHAQGGQHSGSGARPEEDLGPGLSVLGGLFLLFVL 300
Query: 1040 ENMXXXXXXXXXXPQCCRQ 1096
ENM P+CCRQ
Sbjct: 301 ENMLGLLRRRGLGPKCCRQ 319
>ref|XP_001927736.2| PREDICTED: zinc transporter ZIP5 isoform 1 [Sus scrofa].
Length = 541
Score = 343 bits (879), Expect = 1e-94
Identities = 184/319 (57%), Positives = 185/319 (57%)
Frame = +2
Query: 140 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 319
MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARL 60
Query: 320 XHSLGLGRVQALRLXXXXXXXXXXXXXXXDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 499
HSLGLGRVQALRL DNSTHRPQDPELSVDVWAGLPLDPSGWGD
Sbjct: 61 LHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDLE 120
Query: 500 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 679
NEDCLNGSQLLVNFGLSPAAPLTPRQF
Sbjct: 121 EPEAPAPPHGPAPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQF 180
Query: 680 ALLCPALLYQIDSRVCIRAPAPTPPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 859
ALLCPALLYQIDSRVCIRAPAPTPPGD
Sbjct: 181 ALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVHSALAVLLLSLPAPLSLLLLRLLGPRL 240
Query: 860 XXXXXXXXXXXXVGTLCGDALLHLLPHAQGGQHSGSGARPEEDXXXXXXXXXXXXXXXXX 1039
VGTLCGDALLHLLPHAQGGQHSGSGARPEED
Sbjct: 241 LQPLLGFLGALAVGTLCGDALLHLLPHAQGGQHSGSGARPEEDLGPGLSVLGGLFLLFVL 300
Query: 1040 ENMXXXXXXXXXXPQCCRQ 1096
ENM P+CCRQ
Sbjct: 301 ENMLGLLRRRGLGPKCCRQ 319
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,271,980
Number of extensions: 1001810
Number of successful extensions: 6256
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6086
Number of HSP's successfully gapped: 4
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013337
(1096 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129709.1| zinc transporter ZIP5 precursor [Mus musculu... 290 1e-78
Alignment gi|NP_082368.1| zinc transporter ZIP5 precursor [Mus musculus]. 290 1e-78
Alignment gi|NP_082327.2| zinc transporter ZIP5 precursor [Mus musculus]. 290 1e-78
Alignment gi|NP_766241.2| zinc transporter ZIP10 precursor [Mus musculus]. 62 1e-09
>ref|NP_001129709.1| zinc transporter ZIP5 precursor [Mus musculus].
Length = 535
Score = 290 bits (743), Expect = 1e-78
Identities = 159/318 (50%), Positives = 168/318 (52%)
Frame = +2
Query: 140 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 319
MGPP+ HLL GLCV VALGWVGGS PNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPVHHLLTGLCVGVALGWVGGSVPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARL 60
Query: 320 XHSLGLGRVQALRLXXXXXXXXXXXXXXXDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 499
HSLGLGRVQ LRL DN THR Q+PELSVD+WAG+PL PSGWGD
Sbjct: 61 LHSLGLGRVQGLRLGHHEPPTGRAAPTSGDNFTHRLQEPELSVDIWAGMPLGPSGWGD-Q 119
Query: 500 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 679
NEDCLNGSQLLVNFGLSP APLTPRQF
Sbjct: 120 EESKAPDLHGSGPSSLDLFQRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPVAPLTPRQF 179
Query: 680 ALLCPALLYQIDSRVCIRAPAPTPPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 859
ALLCPALLYQIDSRVCI+ PAP PPGD
Sbjct: 180 ALLCPALLYQIDSRVCIKTPAPAPPGDVLSALLHSGLAVLFLSLPAPLSLLLLRLLGPRL 239
Query: 860 XXXXXXXXXXXXVGTLCGDALLHLLPHAQGGQHSGSGARPEEDXXXXXXXXXXXXXXXXX 1039
VGTLCGDALLHLLPHAQGG+H+G + EED
Sbjct: 240 LRPVLGFLGALAVGTLCGDALLHLLPHAQGGRHTGPSEQSEEDLGPGLSVLGGLFLLFML 299
Query: 1040 ENMXXXXXXXXXXPQCCR 1093
EN P+CCR
Sbjct: 300 ENTLGLVRHRGLRPRCCR 317
>ref|NP_082368.1| zinc transporter ZIP5 precursor [Mus musculus].
Length = 535
Score = 290 bits (743), Expect = 1e-78
Identities = 159/318 (50%), Positives = 168/318 (52%)
Frame = +2
Query: 140 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 319
MGPP+ HLL GLCV VALGWVGGS PNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPVHHLLTGLCVGVALGWVGGSVPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARL 60
Query: 320 XHSLGLGRVQALRLXXXXXXXXXXXXXXXDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 499
HSLGLGRVQ LRL DN THR Q+PELSVD+WAG+PL PSGWGD
Sbjct: 61 LHSLGLGRVQGLRLGHHEPPTGRAAPTSGDNFTHRLQEPELSVDIWAGMPLGPSGWGD-Q 119
Query: 500 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 679
NEDCLNGSQLLVNFGLSP APLTPRQF
Sbjct: 120 EESKAPDLHGSGPSSLDLFQRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPVAPLTPRQF 179
Query: 680 ALLCPALLYQIDSRVCIRAPAPTPPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 859
ALLCPALLYQIDSRVCI+ PAP PPGD
Sbjct: 180 ALLCPALLYQIDSRVCIKTPAPAPPGDVLSALLHSGLAVLFLSLPAPLSLLLLRLLGPRL 239
Query: 860 XXXXXXXXXXXXVGTLCGDALLHLLPHAQGGQHSGSGARPEEDXXXXXXXXXXXXXXXXX 1039
VGTLCGDALLHLLPHAQGG+H+G + EED
Sbjct: 240 LRPVLGFLGALAVGTLCGDALLHLLPHAQGGRHTGPSEQSEEDLGPGLSVLGGLFLLFML 299
Query: 1040 ENMXXXXXXXXXXPQCCR 1093
EN P+CCR
Sbjct: 300 ENTLGLVRHRGLRPRCCR 317
>ref|NP_082327.2| zinc transporter ZIP5 precursor [Mus musculus].
Length = 535
Score = 290 bits (743), Expect = 1e-78
Identities = 159/318 (50%), Positives = 168/318 (52%)
Frame = +2
Query: 140 MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXXX 319
MGPP+ HLL GLCV VALGWVGGS PNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MGPPVHHLLTGLCVGVALGWVGGSVPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARL 60
Query: 320 XHSLGLGRVQALRLXXXXXXXXXXXXXXXDNSTHRPQDPELSVDVWAGLPLDPSGWGDXX 499
HSLGLGRVQ LRL DN THR Q+PELSVD+WAG+PL PSGWGD
Sbjct: 61 LHSLGLGRVQGLRLGHHEPPTGRAAPTSGDNFTHRLQEPELSVDIWAGMPLGPSGWGD-Q 119
Query: 500 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQF 679
NEDCLNGSQLLVNFGLSP APLTPRQF
Sbjct: 120 EESKAPDLHGSGPSSLDLFQRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPVAPLTPRQF 179
Query: 680 ALLCPALLYQIDSRVCIRAPAPTPPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 859
ALLCPALLYQIDSRVCI+ PAP PPGD
Sbjct: 180 ALLCPALLYQIDSRVCIKTPAPAPPGDVLSALLHSGLAVLFLSLPAPLSLLLLRLLGPRL 239
Query: 860 XXXXXXXXXXXXVGTLCGDALLHLLPHAQGGQHSGSGARPEEDXXXXXXXXXXXXXXXXX 1039
VGTLCGDALLHLLPHAQGG+H+G + EED
Sbjct: 240 LRPVLGFLGALAVGTLCGDALLHLLPHAQGGRHTGPSEQSEEDLGPGLSVLGGLFLLFML 299
Query: 1040 ENMXXXXXXXXXXPQCCR 1093
EN P+CCR
Sbjct: 300 ENTLGLVRHRGLRPRCCR 317
>ref|NP_766241.2| zinc transporter ZIP10 precursor [Mus musculus].
Length = 833
Score = 61.6 bits (148), Expect = 1e-09
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +2
Query: 605 DCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCI 730
+CLN +QLL +FGL P +P++P F LCPALLYQIDSR+CI
Sbjct: 338 ECLNVTQLLKHFGLGPNSPISPDLFTYLCPALLYQIDSRLCI 379
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,733,375
Number of extensions: 1247315
Number of successful extensions: 6871
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6703
Number of HSP's successfully gapped: 10
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013337
(1096 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001128667.1| zinc transporter ZIP5 [Homo sapiens]. 308 7e-84
Alignment gi|NP_775867.2| zinc transporter ZIP5 [Homo sapiens]. 308 7e-84
Alignment gi|NP_001120729.1| zinc transporter ZIP10 precursor [Homo sapie... 51 2e-06
Alignment gi|NP_065075.1| zinc transporter ZIP10 precursor [Homo sapiens]. 51 2e-06
>ref|NP_001128667.1| zinc transporter ZIP5 [Homo sapiens].
Length = 540
Score = 308 bits (788), Expect = 7e-84
Identities = 165/320 (51%), Positives = 174/320 (54%)
Frame = +2
Query: 137 IMGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXX 316
+MG P+SHLLAG CVWV LGWVGGS PNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MMGSPVSHLLAGFCVWVVLGWVGGSVPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLAR 60
Query: 317 XXHSLGLGRVQALRLXXXXXXXXXXXXXXXDNSTHRPQDPELSVDVWAGLPLDPSGWGDX 496
HSLGLGRVQ LRL DNSTHRPQ+PELSVDVWAG+PL PSGWGD
Sbjct: 61 LLHSLGLGRVQGLRLGQHGPLTGRAASPAADNSTHRPQNPELSVDVWAGMPLGPSGWGDL 120
Query: 497 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQ 676
NEDCLNGSQLLVNFGLSPAAPLTPRQ
Sbjct: 121 EESKAPHLPRGPAPSGLDLLHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQ 180
Query: 677 FALLCPALLYQIDSRVCIRAPAPTPPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 856
FALLCPALLYQIDSRVCI APAP PPGD
Sbjct: 181 FALLCPALLYQIDSRVCIGAPAPAPPGDLLSALLQSALAVLLLSLPSPLSLLLLRLLGPR 240
Query: 857 XXXXXXXXXXXXXVGTLCGDALLHLLPHAQGGQHSGSGARPEEDXXXXXXXXXXXXXXXX 1036
VGTLCGDALLHLLPHAQ G+H+G G PE+D
Sbjct: 241 LLRPLLGFLGALAVGTLCGDALLHLLPHAQEGRHAGPGGLPEKDLGPGLSVLGGLFLLFV 300
Query: 1037 XENMXXXXXXXXXXPQCCRQ 1096
ENM P+CCR+
Sbjct: 301 LENMLGLLRHRGLRPRCCRR 320
>ref|NP_775867.2| zinc transporter ZIP5 [Homo sapiens].
Length = 540
Score = 308 bits (788), Expect = 7e-84
Identities = 165/320 (51%), Positives = 174/320 (54%)
Frame = +2
Query: 137 IMGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENXXXXXXXXXX 316
+MG P+SHLLAG CVWV LGWVGGS PNLGPAEQEQNHYLAQLFGLYGEN
Sbjct: 1 MMGSPVSHLLAGFCVWVVLGWVGGSVPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLAR 60
Query: 317 XXHSLGLGRVQALRLXXXXXXXXXXXXXXXDNSTHRPQDPELSVDVWAGLPLDPSGWGDX 496
HSLGLGRVQ LRL DNSTHRPQ+PELSVDVWAG+PL PSGWGD
Sbjct: 61 LLHSLGLGRVQGLRLGQHGPLTGRAASPAADNSTHRPQNPELSVDVWAGMPLGPSGWGDL 120
Query: 497 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDCLNGSQLLVNFGLSPAAPLTPRQ 676
NEDCLNGSQLLVNFGLSPAAPLTPRQ
Sbjct: 121 EESKAPHLPRGPAPSGLDLLHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQ 180
Query: 677 FALLCPALLYQIDSRVCIRAPAPTPPGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 856
FALLCPALLYQIDSRVCI APAP PPGD
Sbjct: 181 FALLCPALLYQIDSRVCIGAPAPAPPGDLLSALLQSALAVLLLSLPSPLSLLLLRLLGPR 240
Query: 857 XXXXXXXXXXXXXVGTLCGDALLHLLPHAQGGQHSGSGARPEEDXXXXXXXXXXXXXXXX 1036
VGTLCGDALLHLLPHAQ G+H+G G PE+D
Sbjct: 241 LLRPLLGFLGALAVGTLCGDALLHLLPHAQEGRHAGPGGLPEKDLGPGLSVLGGLFLLFV 300
Query: 1037 XENMXXXXXXXXXXPQCCRQ 1096
ENM P+CCR+
Sbjct: 301 LENMLGLLRHRGLRPRCCRR 320
>ref|NP_001120729.1| zinc transporter ZIP10 precursor [Homo sapiens].
Length = 831
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +2
Query: 599 NEDCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCI 730
+ +CLN +QLL +G +P++ F LCPALLYQIDSR+CI
Sbjct: 334 HHECLNVTQLLKYYGHGANSPISTDLFTYLCPALLYQIDSRLCI 377
>ref|NP_065075.1| zinc transporter ZIP10 precursor [Homo sapiens].
Length = 831
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +2
Query: 599 NEDCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCI 730
+ +CLN +QLL +G +P++ F LCPALLYQIDSR+CI
Sbjct: 334 HHECLNVTQLLKYYGHGANSPISTDLFTYLCPALLYQIDSRLCI 377
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,456,423
Number of extensions: 1529200
Number of successful extensions: 8962
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8716
Number of HSP's successfully gapped: 6
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013337
(1096 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 678 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 678 bits (342), Expect = 0.0
Identities = 345/346 (99%)
Strand = Plus / Minus
Query: 79 ccaggatgctccgagagcagtagaagcctgaaccagagcctctaaccctgtccccccaat 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034959 ccaggatgctccgagagcagtagaagcctgaaccagagcctctaaccctgtccccccaat 23034900
Query: 139 aatggggcccccattgagtcatctgctggctggcctgtgtgtgtgggtggccttgggctg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034899 aatggggcccccattgagtcatctgctggctggcctgtgtgtgtgggtggccttgggctg 23034840
Query: 199 ggtaggaggctctgctcccaacctgggccctgctgagcaggagcagaaccattacctggc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034839 ggtaggaggctctgctcccaacctgggccctgctgagcaggagcagaaccattacctggc 23034780
Query: 259 ccagctgtttggcctctatggggagaacgggacgctgactgcagggggcctggcacggct 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034779 ccagctgtttggcctctatggggagaacgggacgctgactgcagggggcctggcacggct 23034720
Query: 319 tcttcacagcctgggactaggccgagttcaagcccttcgcctgggacaccacgggcctcc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034719 tcttcacagcctgggactaggccgagttcaagcccttcgcctgggacaccacgggcctcc 23034660
Query: 379 cgctggtcgggctacacccccagctggagacaattccacccacagg 424
|||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 23034659 cgctggtcgggctacacccccagctgaagacaattccacccacagg 23034614
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 422 aggccacaggaccctgagctgagtgtggatgtctgggcagggctgcctctggatccctca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034417 aggccacaggaccctgagctgagtgtggatgtctgggcagggctgcctctggatccctca 23034358
Query: 482 gggtggggtgacctggaagagccagaggccccagcaccaccccatgggccggccccctca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034357 gggtggggtgacctggaagagccagaggccccagcaccaccccatgggccggccccctca 23034298
Query: 542 ggcctgggcctctttcacaggcttctgctgctggaccattcactagctgaccatctgaat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23034297 ggcctgggcctctttcacaggcttctgctgctggaccattcactagctgaccatctgaat 23034238
Query: 602 gaggat 607
||||||
Sbjct: 23034237 gaggat 23034232
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 770 gccctggtccacagtgccctggcagtcctgctgctcagccttcctgctcccctctccctg 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23032680 gccctggtccacagtgccctggcagtcctgctgctcagccttcctgctcccctctccctg 23032621
Query: 830 ctcttgctgcggctcctgggacctcgtctgttgcagcccctgctgggcttcctgggtgcc 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23032620 ctcttgctgcggctcctgggacctcgtctgttgcagcccctgctgggcttcctgggtgcc 23032561
Query: 890 ctggccgtgggcaccctttgtggggatgcactgctacacctactgccacatg 941
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23032560 ctggccgtgggcaccctttgtggggatgcactgctacacctactgccacatg 23032509
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 608 tgtctgaatggctcccagctgctggtcaattttggcctgagccctgctgctcctctgacc 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23033038 tgtctgaatggctcccagctgctggtcaattttggcctgagccctgctgctcctctgacc 23032979
Query: 668 cctcgtcagtttgctctgctgtgtccagccctgctgtatcagattgacagccgtgtctgc 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23032978 cctcgtcagtttgctctgctgtgtccagccctgctgtatcagattgacagccgtgtctgc 23032919
Query: 728 atccgggccccagccccaacgcctccgggggatctactatctg 770
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23032918 atccgggccccagccccaacgcctccgggggatctactatctg 23032876
Score = 256 bits (129), Expect = 2e-65
Identities = 138/141 (97%)
Strand = Plus / Minus
Query: 941 gcgcaaggagggcagcacagtggatctggcgcacggccagaggaggacctgggaccagga 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23032310 gcgcaaggagggcagcacagtggatctggcgcacggccagaggaggacctgggaccagga 23032251
Query: 1001 ctgtcggtgcttggtggtctcttcctgctcttcgtcctggagaacatgctagggcttttg 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23032250 ctgtcggtgcttggtggtctcttcctgctcttcgtcctggagaacatgctagggcttttg 23032191
Query: 1061 cggcgatgagggctccggcca 1081
||||| |||||||| |||||
Sbjct: 23032190 cggcgtcgagggctcgggcca 23032170
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 1 gtttcctgttgtcaggtaatgccagcctcaaccctctggaccaatcgcccccatcagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23036162 gtttcctgttgtcaggtaatgccagcctcaaccctctggaccaatcgcccccatcagact 23036103
Query: 61 gtgctcctcaattgtataccagg 83
|||||||||||||||||||||||
Sbjct: 23036102 gtgctcctcaattgtataccagg 23036080
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,726,646
Number of extensions: 290
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 6
Length of query: 1096
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1075
Effective length of database: 2,808,413,156
Effective search space: 3019044142700
Effective search space used: 3019044142700
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)