Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013339
(986 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068967.1| ras-related protein Rab-18 [Bos taurus]. 394 e-110
Alignment gi|NP_001179594.1| ras-related protein Rab-2B [Bos taurus]. 172 3e-43
Alignment gi|XP_002690779.1| PREDICTED: RAB2B protein-like [Bos taurus]. 172 3e-43
Alignment gi|NP_001091596.1| ras-related protein Rab-35 [Bos taurus]. 165 5e-41
Alignment gi|NP_001068822.1| ras-related protein Rab-2A [Bos taurus]. 164 1e-40
Alignment gi|NP_001094758.1| ras-related protein Rab-10 [Bos taurus]. 163 2e-40
Alignment gi|NP_001069785.1| ras-related protein Rab-8B [Bos taurus]. 163 2e-40
Alignment gi|NP_001069701.1| ras-related protein Rab-1B [Bos taurus]. 162 4e-40
Alignment gi|NP_001019711.1| ras-related protein Rab-13 [Bos taurus]. 160 2e-39
Alignment gi|NP_001095762.1| ras-related protein Rab-12 [Bos taurus]. 159 5e-39
>ref|NP_001068967.1| ras-related protein Rab-18 [Bos taurus].
Length = 206
Score = 394 bits (1011), Expect = e-110
Identities = 197/206 (95%), Positives = 197/206 (95%)
Frame = +2
Query: 227 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 406
MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA
Sbjct: 1 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 60
Query: 407 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 586
IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV
Sbjct: 61 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 120
Query: 587 GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 766
GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN
Sbjct: 121 GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 180
Query: 767 QNKGVKLTHREEXXXXXXXXXYCSVL 844
QNKGVKLTHREE YCSVL
Sbjct: 181 QNKGVKLTHREEGQGGGACGGYCSVL 206
>ref|NP_001179594.1| ras-related protein Rab-2B [Bos taurus].
Length = 216
Score = 172 bits (437), Expect = 3e-43
Identities = 91/183 (49%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + +++DG + KL IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 67
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRR+TF L +WL + + + N ++ ML+GNK D E+
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVI-MLIGNKSDLESR 126
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
R+V R EG FAR+H ++F+E SAKT V+ AF +E+ KI Q GL++ N+ G
Sbjct: 127 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ--GLFDVHNEANG 184
Query: 779 VKL 787
+K+
Sbjct: 185 IKI 187
>ref|XP_002690779.1| PREDICTED: RAB2B protein-like [Bos taurus].
Length = 216
Score = 172 bits (437), Expect = 3e-43
Identities = 91/183 (49%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + +++DG + KL IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 67
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRR+TF L +WL + + + N ++ ML+GNK D E+
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVI-MLIGNKSDLESR 126
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
R+V R EG FAR+H ++F+E SAKT V+ AF +E+ KI Q GL++ N+ G
Sbjct: 127 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ--GLFDVHNEANG 184
Query: 779 VKL 787
+K+
Sbjct: 185 IKI 187
>ref|NP_001091596.1| ras-related protein Rab-35 [Bos taurus].
Length = 201
Score = 165 bits (418), Expect = 5e-41
Identities = 90/193 (46%), Positives = 121/193 (62%), Gaps = 5/193 (2%)
Frame = +2
Query: 227 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 406
M D K+LIIG+SGVGKSSLLLRF D+TF TIGVDFK++T+ ++G K KL
Sbjct: 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 60
Query: 407 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 586
IWDTAGQERFRT+T +YYRG GVI+VYDVT ++FV + WL+E+ C +D+ +LV
Sbjct: 61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILV 118
Query: 587 GNK-IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP----GL 751
GNK D E + V+ + KFA + + E SAK V+ F + E +++
Sbjct: 119 GNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAK 178
Query: 752 WESENQNKGVKLT 790
+ + QN VKLT
Sbjct: 179 QQQQQQNDVVKLT 191
>ref|NP_001068822.1| ras-related protein Rab-2A [Bos taurus].
Length = 189
Score = 164 bits (414), Expect = 1e-40
Identities = 82/151 (54%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + I++DG + KL IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRRDTF L WL + + N ++ ML+GNK D E+
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVI-MLIGNKSDLESR 126
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQ 703
REV + EG FAR+H ++F+E SAKT V+
Sbjct: 127 REVKKEEGEAFAREHGLIFMETSAKTASNVE 157
>ref|NP_001094758.1| ras-related protein Rab-10 [Bos taurus].
Length = 200
Score = 163 bits (413), Expect = 2e-40
Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ +L RF+DD F+ +TIG+DFK+KT+ + G K KL IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQER 70
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
F T+T SYYRGA G++LVYD+T +F + WL ++ + D+ ML+GNK D ++
Sbjct: 71 FHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEH-ANEDVERMLLGNKCDMDDK 129
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQN 772
R V + +G + AR+H + F E SAK ++ AF L E I++ + E ++N
Sbjct: 130 RVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
>ref|NP_001069785.1| ras-related protein Rab-8B [Bos taurus].
Length = 207
Score = 163 bits (412), Expect = 2e-40
Identities = 78/162 (48%), Positives = 114/162 (70%), Gaps = 1/162 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ LL RF++D F+ +TIG+DFK++TI +DG K KL IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 69
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KEN 610
FRT+T +YYRGA G++LVYD+T +F + NW+ +E + + +D+ M++GNK D +
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVERMILGNKCDMNDK 128
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 736
R+V + G K A + + F+EASAK+ V+ AF L I+
Sbjct: 129 RQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIM 170
>ref|NP_001069701.1| ras-related protein Rab-1B [Bos taurus].
Length = 201
Score = 162 bits (410), Expect = 4e-40
Identities = 82/166 (49%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGKS LLLRF DDT+ +TIGVDFK++TI +DG KL IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 613
FRT+T SYYRGA G+I+VYDVT ++++ + WL E++ Y + N + +LVGNK D +
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASEN-VNKLLVGNKSDLTTK 128
Query: 614 E-VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG 748
+ VD +FA + F+E SAK V+ AF + +I + G
Sbjct: 129 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 174
>ref|NP_001019711.1| ras-related protein Rab-13 [Bos taurus].
Length = 203
Score = 160 bits (405), Expect = 2e-39
Identities = 76/175 (43%), Positives = 115/175 (65%), Gaps = 1/175 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ L++RF +D F+ +TIG+DF+++T+ ++G K KL +WDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQER 69
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-N 610
F+T+T +YYRGA G+ILVYD+T +F + NW+ ++ + + +L+GNK D E
Sbjct: 70 FKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAG-VERLLLGNKCDMEAK 128
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNK 775
R+V + + K AR+H + F E SAK+ V AF L I+ G +N NK
Sbjct: 129 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLKNNNK 183
>ref|NP_001095762.1| ras-related protein Rab-12 [Bos taurus].
Length = 244
Score = 159 bits (401), Expect = 5e-39
Identities = 82/165 (49%), Positives = 117/165 (70%), Gaps = 2/165 (1%)
Frame = +2
Query: 251 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 430
L+++IIG GVGK+SL+ RFTDDTF +T+GVDFK+KT+ + G K +L IWDTAGQE
Sbjct: 43 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 102
Query: 431 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE- 607
RF ++T +YYR A+G+ILVYD+T+++TF L W+ ++ Y + D +LVGNK+D E
Sbjct: 103 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDCET 161
Query: 608 NREVDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQ 739
+RE+ R +G KFA++ M F EASAK V F +LV+ I++
Sbjct: 162 DREISRQQGEKFAQQIAGMRFCEASAKDNFNVDEIFLKLVDDILK 206
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,382,440
Number of extensions: 838745
Number of successful extensions: 3851
Number of sequences better than 1.0e-05: 170
Number of HSP's gapped: 3691
Number of HSP's successfully gapped: 170
Length of query: 328
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,273,310
Effective search space: 3211494750
Effective search space used: 3211494750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013339
(986 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548529.2| PREDICTED: similar to Ras-related protein Rab-1... 392 e-109
Alignment gi|XP_848769.1| PREDICTED: similar to Ras-related protein Rab-1... 392 e-109
Alignment gi|XP_857174.1| PREDICTED: similar to RAB18, member RAS oncogen... 253 5e-82
Alignment gi|XP_857223.1| PREDICTED: similar to RAB18, member RAS oncogen... 253 2e-67
Alignment gi|XP_538000.2| PREDICTED: similar to RAB2, member RAS oncogene... 176 2e-44
Alignment gi|NP_001003318.1| ras-related protein Rab-2A [Canis lupus fami... 174 9e-44
Alignment gi|XP_532625.2| PREDICTED: similar to RAB2B protein isoform 1 [... 172 3e-43
Alignment gi|XP_855128.1| PREDICTED: similar to Ras-related protein Rab-1... 164 9e-41
Alignment gi|NP_001003277.2| ras-related protein Rab-10 [Canis lupus fami... 163 2e-40
Alignment gi|XP_855590.1| PREDICTED: rab10 GTP-binding protein [Canis fam... 163 2e-40
>ref|XP_548529.2| PREDICTED: similar to Ras-related protein Rab-18 isoform 1 [Canis
familiaris].
Length = 206
Score = 392 bits (1008), Expect = e-109
Identities = 196/206 (95%), Positives = 197/206 (95%)
Frame = +2
Query: 227 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 406
MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA
Sbjct: 1 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 60
Query: 407 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 586
IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV
Sbjct: 61 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 120
Query: 587 GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 766
GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN
Sbjct: 121 GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 180
Query: 767 QNKGVKLTHREEXXXXXXXXXYCSVL 844
QNKGVKLTHREE YCS+L
Sbjct: 181 QNKGVKLTHREEGPGGGACGGYCSML 206
>ref|XP_848769.1| PREDICTED: similar to Ras-related protein Rab-18 isoform 2 [Canis
familiaris].
Length = 206
Score = 392 bits (1008), Expect = e-109
Identities = 196/206 (95%), Positives = 197/206 (95%)
Frame = +2
Query: 227 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 406
MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA
Sbjct: 1 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 60
Query: 407 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 586
IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV
Sbjct: 61 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 120
Query: 587 GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 766
GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN
Sbjct: 121 GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 180
Query: 767 QNKGVKLTHREEXXXXXXXXXYCSVL 844
QNKGVKLTHREE YCS+L
Sbjct: 181 QNKGVKLTHREEGPGGGACGGYCSML 206
>ref|XP_857174.1| PREDICTED: similar to RAB18, member RAS oncogene family (predicted)
isoform 5 [Canis familiaris].
Length = 164
Score = 253 bits (646), Expect(2) = 5e-82
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 227 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 406
MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA
Sbjct: 1 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 60
Query: 407 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 586
IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV
Sbjct: 61 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 120
Query: 587 GNKIDK 604
GNKIDK
Sbjct: 121 GNKIDK 126
Score = 70.9 bits (172), Expect(2) = 5e-82
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +3
Query: 672 RQVQKPVMVYSVLLRSLLKRSFRHLDCGKVRTRIKE*N 785
RQVQKPVMVYSV LR+LLKRSFRHLDCGKVRTRIKE N
Sbjct: 127 RQVQKPVMVYSVPLRNLLKRSFRHLDCGKVRTRIKESN 164
>ref|XP_857223.1| PREDICTED: similar to RAB18, member RAS oncogene family (predicted)
isoform 6 [Canis familiaris].
Length = 138
Score = 253 bits (646), Expect = 2e-67
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 227 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 406
MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA
Sbjct: 1 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 60
Query: 407 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 586
IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV
Sbjct: 61 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 120
Query: 587 GNKIDK 604
GNKIDK
Sbjct: 121 GNKIDK 126
>ref|XP_538000.2| PREDICTED: similar to RAB2, member RAS oncogene family [Canis
familiaris].
Length = 271
Score = 176 bits (447), Expect = 2e-44
Identities = 94/183 (51%), Positives = 126/183 (68%), Gaps = 5/183 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + I++DG + KL IWDTAGQE
Sbjct: 66 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKRIKLQIWDTAGQES 125
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRRDTF L WL + Y N ++ ML+GNK D E+
Sbjct: 126 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARHYSNSNMVI-MLIGNKSDLESR 184
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
REV++ EG FAR+H ++F+E SAKT V+ AF +E+ EKI + G+ + N+ G
Sbjct: 185 REVNKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE--GVLDINNEANG 242
Query: 779 VKL 787
VK+
Sbjct: 243 VKI 245
>ref|NP_001003318.1| ras-related protein Rab-2A [Canis lupus familiaris].
Length = 212
Score = 174 bits (442), Expect = 9e-44
Identities = 92/183 (50%), Positives = 126/183 (68%), Gaps = 5/183 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + I++DG + KL IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRRDTF L WL + + N ++ ML+GNK D E+
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVI-MLIGNKSDLESR 126
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
REV + EG FAR+H ++F+E SAKT V+ AF +E+ EKI + G+++ N+ G
Sbjct: 127 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE--GVFDINNEANG 184
Query: 779 VKL 787
+K+
Sbjct: 185 IKI 187
>ref|XP_532625.2| PREDICTED: similar to RAB2B protein isoform 1 [Canis familiaris].
Length = 216
Score = 172 bits (437), Expect = 3e-43
Identities = 91/183 (49%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + +++DG + KL IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 67
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRR+TF L +WL + + + N ++ ML+GNK D E+
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVI-MLIGNKSDLESR 126
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
R+V R EG FAR+H ++F+E SAKT V+ AF +E+ KI Q GL++ N+ G
Sbjct: 127 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ--GLFDVHNEANG 184
Query: 779 VKL 787
+K+
Sbjct: 185 IKI 187
>ref|XP_855128.1| PREDICTED: similar to Ras-related protein Rab-13 [Canis
familiaris].
Length = 248
Score = 164 bits (416), Expect = 9e-41
Identities = 78/175 (44%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ L++RF +D+F+ +TIG+DFK++T+ V+G K KL +WDTAGQER
Sbjct: 55 KLLLIGDSGVGKTCLIIRFAEDSFNNTYISTIGIDFKIRTVDVEGKKIKLQVWDTAGQER 114
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-N 610
F+T+T +YYRGA G+ILVYD+T +F + NW+ ++ + + +L+GNK D E
Sbjct: 115 FKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAG-VERLLLGNKCDMEAK 173
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNK 775
R+V + + +K AR+H + F E SAK+ V AF L I+ G S N +K
Sbjct: 174 RKVQKEQAIKLAREHGIRFFETSAKSSTNVDEAFSSLARDILLKSGGRRSGNSHK 228
>ref|NP_001003277.2| ras-related protein Rab-10 [Canis lupus familiaris].
Length = 200
Score = 163 bits (413), Expect = 2e-40
Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ +L RF+DD F+ +TIG+DFK+KT+ + G K KL IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQER 70
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
F T+T SYYRGA G++LVYD+T +F + WL ++ + D+ ML+GNK D ++
Sbjct: 71 FHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEH-ANEDVERMLLGNKCDMDDK 129
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQN 772
R V + +G + AR+H + F E SAK ++ AF L E I++ + E ++N
Sbjct: 130 RVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
>ref|XP_855590.1| PREDICTED: rab10 GTP-binding protein [Canis familiaris].
Length = 200
Score = 163 bits (413), Expect = 2e-40
Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ +L RF+DD F+ +TIG+DFK+KT+ + G K KL IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQER 70
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
F T+T SYYRGA G++LVYD+T +F + WL ++ + D+ ML+GNK D ++
Sbjct: 71 FHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEH-ANEDVERMLLGNKCDMDDK 129
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQN 772
R V + +G + AR+H + F E SAK ++ AF L E I++ + E ++N
Sbjct: 130 RVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,680,812
Number of extensions: 856877
Number of successful extensions: 4029
Number of sequences better than 1.0e-05: 170
Number of HSP's gapped: 3882
Number of HSP's successfully gapped: 172
Length of query: 328
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 225
Effective length of database: 15,440,896
Effective search space: 3474201600
Effective search space used: 3474201600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013339
(986 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357800.1| PREDICTED: ras-related protein Rab-18-like [... 394 e-110
Alignment gi|XP_001926739.2| PREDICTED: ras-related protein Rab-2A [Sus s... 174 5e-44
Alignment gi|XP_003128629.1| PREDICTED: ras-related protein Rab-2B-like [... 172 2e-43
Alignment gi|XP_003128612.1| PREDICTED: ras-related protein Rab-2B-like [... 172 2e-43
Alignment gi|NP_001230220.1| ras-related protein Rab-35 [Sus scrofa]. 165 3e-41
Alignment gi|NP_001229989.1| RAB10, member RAS oncogene family [Sus scrof... 163 1e-40
Alignment gi|XP_001927266.2| PREDICTED: ras-related protein Rab-13 [Sus s... 160 1e-39
Alignment gi|NP_001026957.1| ras-related protein Rab-1A [Sus scrofa]. 160 1e-39
Alignment gi|NP_001116645.1| ras-related protein Rab-1B [Sus scrofa]. 159 3e-39
Alignment gi|NP_001230731.1| RAB8A, member RAS oncogene family [Sus scrof... 158 5e-39
>ref|XP_003357800.1| PREDICTED: ras-related protein Rab-18-like [Sus scrofa].
Length = 206
Score = 394 bits (1011), Expect = e-110
Identities = 197/206 (95%), Positives = 197/206 (95%)
Frame = +2
Query: 227 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 406
MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA
Sbjct: 1 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 60
Query: 407 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 586
IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV
Sbjct: 61 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 120
Query: 587 GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 766
GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN
Sbjct: 121 GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 180
Query: 767 QNKGVKLTHREEXXXXXXXXXYCSVL 844
QNKGVKLTHREE YCSVL
Sbjct: 181 QNKGVKLTHREEGQGGGACGGYCSVL 206
>ref|XP_001926739.2| PREDICTED: ras-related protein Rab-2A [Sus scrofa].
Length = 212
Score = 174 bits (442), Expect = 5e-44
Identities = 92/183 (50%), Positives = 126/183 (68%), Gaps = 5/183 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + I++DG + KL IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRRDTF L WL + + N ++ ML+GNK D E+
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVI-MLIGNKSDLESR 126
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
REV + EG FAR+H ++F+E SAKT V+ AF +E+ EKI + G+++ N+ G
Sbjct: 127 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE--GVFDINNEANG 184
Query: 779 VKL 787
+K+
Sbjct: 185 IKI 187
>ref|XP_003128629.1| PREDICTED: ras-related protein Rab-2B-like [Sus scrofa].
Length = 216
Score = 172 bits (437), Expect = 2e-43
Identities = 91/183 (49%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + +++DG + KL IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 67
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRR+TF L +WL + + + N ++ ML+GNK D E+
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVI-MLIGNKSDLESR 126
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
R+V R EG FAR+H ++F+E SAKT V+ AF +E+ KI Q GL++ N+ G
Sbjct: 127 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ--GLFDVHNEANG 184
Query: 779 VKL 787
+K+
Sbjct: 185 IKI 187
>ref|XP_003128612.1| PREDICTED: ras-related protein Rab-2B-like [Sus scrofa].
Length = 216
Score = 172 bits (437), Expect = 2e-43
Identities = 91/183 (49%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + +++DG + KL IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 67
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRR+TF L +WL + + + N ++ ML+GNK D E+
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVI-MLIGNKSDLESR 126
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
R+V R EG FAR+H ++F+E SAKT V+ AF +E+ KI Q GL++ N+ G
Sbjct: 127 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ--GLFDVHNEANG 184
Query: 779 VKL 787
+K+
Sbjct: 185 IKI 187
>ref|NP_001230220.1| ras-related protein Rab-35 [Sus scrofa].
Length = 201
Score = 165 bits (418), Expect = 3e-41
Identities = 90/193 (46%), Positives = 121/193 (62%), Gaps = 5/193 (2%)
Frame = +2
Query: 227 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 406
M D K+LIIG+SGVGKSSLLLRF D+TF TIGVDFK++T+ ++G K KL
Sbjct: 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 60
Query: 407 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 586
IWDTAGQERFRT+T +YYRG GVI+VYDVT ++FV + WL+E+ C +D+ +LV
Sbjct: 61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILV 118
Query: 587 GNK-IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP----GL 751
GNK D E + V+ + KFA + + E SAK V+ F + E +++
Sbjct: 119 GNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAK 178
Query: 752 WESENQNKGVKLT 790
+ + QN VKLT
Sbjct: 179 QQQQQQNDVVKLT 191
>ref|NP_001229989.1| RAB10, member RAS oncogene family [Sus scrofa].
Length = 200
Score = 163 bits (413), Expect = 1e-40
Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ +L RF+DD F+ +TIG+DFK+KT+ + G K KL IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQER 70
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
F T+T SYYRGA G++LVYD+T +F + WL ++ + D+ ML+GNK D ++
Sbjct: 71 FHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEH-ANEDVERMLLGNKCDMDDK 129
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQN 772
R V + +G + AR+H + F E SAK ++ AF L E I++ + E ++N
Sbjct: 130 RVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
>ref|XP_001927266.2| PREDICTED: ras-related protein Rab-13 [Sus scrofa].
Length = 203
Score = 160 bits (405), Expect = 1e-39
Identities = 77/175 (44%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ L++RF +D F+ +TIG+DFK++T+ ++G K KL +WDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 69
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-N 610
F+T+T +YYRGA G+ILVYD+T +F + NW+ ++ + + +L+GNK D E
Sbjct: 70 FKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAG-VERLLLGNKCDMEAK 128
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNK 775
R+V + + K AR+H + F E SAK+ V AF L I+ G N NK
Sbjct: 129 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNK 183
>ref|NP_001026957.1| ras-related protein Rab-1A [Sus scrofa].
Length = 205
Score = 160 bits (404), Expect = 1e-39
Identities = 85/181 (46%), Positives = 116/181 (64%), Gaps = 3/181 (1%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGKS LLLRF DDT+ +TIGVDFK++TI +DG KL IWDTAGQER
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 613
FRT+T SYYRGA G+I+VYDVT + +F + WL E++ Y + N + +LVGNK D +
Sbjct: 73 FRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASEN-VNKLLVGNKCDLTTK 131
Query: 614 E-VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT--PGLWESENQNKGVK 784
+ VD +FA + F+E SAK V+ +F + +I + PG + VK
Sbjct: 132 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 191
Query: 785 L 787
+
Sbjct: 192 I 192
>ref|NP_001116645.1| ras-related protein Rab-1B [Sus scrofa].
Length = 201
Score = 159 bits (401), Expect = 3e-39
Identities = 81/166 (48%), Positives = 111/166 (66%), Gaps = 1/166 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGKS LLLRF DDT+ +TIGVDFK++TI +DG KL IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 613
RT+T SYYRGA G+I+VYDVT ++++ + WL E++ Y + N + +LVGNK D +
Sbjct: 70 GRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASEN-VNKLLVGNKSDLTTK 128
Query: 614 E-VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG 748
+ VD +FA + F+E SAK V+ AF + +I + G
Sbjct: 129 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 174
>ref|NP_001230731.1| RAB8A, member RAS oncogene family [Sus scrofa].
Length = 207
Score = 158 bits (399), Expect = 5e-39
Identities = 79/184 (42%), Positives = 121/184 (65%), Gaps = 5/184 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ +L RF++D F+ +TIG+DFK++TI +DG + KL IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KEN 610
FRT+T +YYRGA G++LVYD+T +F + NW+ +E + + D+ M++GNK D +
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA-DVEKMILGNKCDVNDK 128
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
R+V + G K A + + F+E SAK V+ AF ++ K+ + + N+G
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQG 188
Query: 779 VKLT 790
VK+T
Sbjct: 189 VKIT 192
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,414,987
Number of extensions: 533409
Number of successful extensions: 2560
Number of sequences better than 1.0e-05: 130
Number of HSP's gapped: 2433
Number of HSP's successfully gapped: 130
Length of query: 328
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,879,129
Effective search space: 2033320541
Effective search space used: 2033320541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013339
(986 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851415.1| ras-related protein Rab-18 [Mus musculus]. 392 e-109
Alignment gi|NP_067493.1| ras-related protein Rab-2A [Mus musculus]. 174 7e-44
Alignment gi|NP_766189.1| ras-related protein Rab-2B [Mus musculus]. 171 6e-43
Alignment gi|NP_937806.1| ras-related protein Rab-35 [Mus musculus]. 165 4e-41
Alignment gi|NP_057885.1| ras-related protein Rab-10 [Mus musculus]. 163 2e-40
Alignment gi|NP_083852.1| ras-related protein Rab-1B [Mus musculus]. 162 4e-40
Alignment gi|NP_775589.1| ras-related protein Rab-8B [Mus musculus]. 162 4e-40
Alignment gi|NP_033022.1| ras-related protein Rab-1A [Mus musculus]. 161 8e-40
Alignment gi|NP_080953.1| ras-related protein Rab-13 [Mus musculus]. 159 3e-39
Alignment gi|NP_077768.2| ras-related protein Rab-12 [Mus musculus]. 159 4e-39
>ref|NP_851415.1| ras-related protein Rab-18 [Mus musculus].
Length = 206
Score = 392 bits (1007), Expect = e-109
Identities = 196/206 (95%), Positives = 197/206 (95%)
Frame = +2
Query: 227 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 406
MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA
Sbjct: 1 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 60
Query: 407 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 586
IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV
Sbjct: 61 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 120
Query: 587 GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 766
GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN
Sbjct: 121 GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 180
Query: 767 QNKGVKLTHREEXXXXXXXXXYCSVL 844
QNKGVKL+HREE YCSVL
Sbjct: 181 QNKGVKLSHREESRGGGACGGYCSVL 206
>ref|NP_067493.1| ras-related protein Rab-2A [Mus musculus].
Length = 212
Score = 174 bits (442), Expect = 7e-44
Identities = 92/183 (50%), Positives = 126/183 (68%), Gaps = 5/183 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + I++DG + KL IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRRDTF L WL + + N ++ ML+GNK D E+
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVI-MLIGNKSDLESR 126
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
REV + EG FAR+H ++F+E SAKT V+ AF +E+ EKI + G+++ N+ G
Sbjct: 127 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE--GVFDINNEANG 184
Query: 779 VKL 787
+K+
Sbjct: 185 IKI 187
>ref|NP_766189.1| ras-related protein Rab-2B [Mus musculus].
Length = 216
Score = 171 bits (434), Expect = 6e-43
Identities = 90/183 (49%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + +++DG + KL IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 67
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRR+TF L +WL + + + N ++ ML+GNK D E+
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVI-MLIGNKSDLESR 126
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
R+V R EG FAR+H ++F+E SAKT V+ A+ +E+ KI Q GL++ N+ G
Sbjct: 127 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQ--GLFDVHNEANG 184
Query: 779 VKL 787
+K+
Sbjct: 185 IKI 187
>ref|NP_937806.1| ras-related protein Rab-35 [Mus musculus].
Length = 201
Score = 165 bits (418), Expect = 4e-41
Identities = 90/193 (46%), Positives = 121/193 (62%), Gaps = 5/193 (2%)
Frame = +2
Query: 227 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 406
M D K+LIIG+SGVGKSSLLLRF D+TF TIGVDFK++T+ ++G K KL
Sbjct: 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 60
Query: 407 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 586
IWDTAGQERFRT+T +YYRG GVI+VYDVT ++FV + WL+E+ C +D+ +LV
Sbjct: 61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILV 118
Query: 587 GNK-IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP----GL 751
GNK D E + V+ + KFA + + E SAK V+ F + E +++
Sbjct: 119 GNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAK 178
Query: 752 WESENQNKGVKLT 790
+ + QN VKLT
Sbjct: 179 QQQQQQNDVVKLT 191
>ref|NP_057885.1| ras-related protein Rab-10 [Mus musculus].
Length = 200
Score = 163 bits (413), Expect = 2e-40
Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ +L RF+DD F+ +TIG+DFK+KT+ + G K KL IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQER 70
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
F T+T SYYRGA G++LVYD+T +F + WL ++ + D+ ML+GNK D ++
Sbjct: 71 FHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEH-ANEDVERMLLGNKCDMDDK 129
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQN 772
R V + +G + AR+H + F E SAK ++ AF L E I++ + E ++N
Sbjct: 130 RVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
>ref|NP_083852.1| ras-related protein Rab-1B [Mus musculus].
Length = 201
Score = 162 bits (410), Expect = 4e-40
Identities = 82/166 (49%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGKS LLLRF DDT+ +TIGVDFK++TI +DG KL IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 613
FRT+T SYYRGA G+I+VYDVT ++++ + WL E++ Y + N + +LVGNK D +
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASEN-VNKLLVGNKSDLTTK 128
Query: 614 E-VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG 748
+ VD +FA + F+E SAK V+ AF + +I + G
Sbjct: 129 KVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMG 174
>ref|NP_775589.1| ras-related protein Rab-8B [Mus musculus].
Length = 207
Score = 162 bits (410), Expect = 4e-40
Identities = 77/162 (47%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ LL RF++D F+ +TIG+DFK++TI +DG K KL IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 69
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KEN 610
FRT+T +YYRGA G++LVYD+T +F + NW+ +E + + +D+ M++GNK D +
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVERMILGNKCDMNDK 128
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 736
R+V + G K A + + F+E SAK+ V+ AF L I+
Sbjct: 129 RQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIM 170
>ref|NP_033022.1| ras-related protein Rab-1A [Mus musculus].
Length = 205
Score = 161 bits (407), Expect = 8e-40
Identities = 85/181 (46%), Positives = 117/181 (64%), Gaps = 3/181 (1%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGKS LLLRF DDT+ +TIGVDFK++TI +DG KL IWDTAGQER
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 613
FRT+T SYYRGA G+I+VYDVT +++F + WL E++ Y + N + +LVGNK D +
Sbjct: 73 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN-VNKLLVGNKCDLTTK 131
Query: 614 E-VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT--PGLWESENQNKGVK 784
+ VD +FA + F+E SAK V+ +F + +I + PG + VK
Sbjct: 132 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 191
Query: 785 L 787
+
Sbjct: 192 I 192
>ref|NP_080953.1| ras-related protein Rab-13 [Mus musculus].
Length = 202
Score = 159 bits (402), Expect = 3e-39
Identities = 76/175 (43%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ L++RF +D F+ +TIG+DFK++T+ ++G + KL +WDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQER 69
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-N 610
F+T+T +YYRGA G+ILVYD+T +F + NW+ ++ + + +L+GNK D E
Sbjct: 70 FKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAG-VERLLLGNKCDMEAK 128
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNK 775
R+V R + K AR+H + F E SAK+ V AF L I+ G S +K
Sbjct: 129 RQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNSK 183
>ref|NP_077768.2| ras-related protein Rab-12 [Mus musculus].
Length = 243
Score = 159 bits (401), Expect = 4e-39
Identities = 82/165 (49%), Positives = 117/165 (70%), Gaps = 2/165 (1%)
Frame = +2
Query: 251 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 430
L+++IIG GVGK+SL+ RFTDDTF +T+GVDFK+KT+ + G K +L IWDTAGQE
Sbjct: 42 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 101
Query: 431 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE- 607
RF ++T +YYR A+G+ILVYD+T+++TF L W+ ++ Y + D +LVGNK+D E
Sbjct: 102 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDCET 160
Query: 608 NREVDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQ 739
+RE+ R +G KFA++ M F EASAK V F +LV+ I++
Sbjct: 161 DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 205
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,305,058
Number of extensions: 725568
Number of successful extensions: 3041
Number of sequences better than 1.0e-05: 147
Number of HSP's gapped: 2908
Number of HSP's successfully gapped: 147
Length of query: 328
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 226
Effective length of database: 12,553,887
Effective search space: 2837178462
Effective search space used: 2837178462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013339
(986 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067075.1| ras-related protein Rab-18 [Homo sapiens]. 392 e-109
Alignment gi|NP_002856.1| ras-related protein Rab-2A isoform a [Homo sapi... 174 9e-44
Alignment gi|NP_116235.2| ras-related protein Rab-2B isoform 1 [Homo sapi... 172 3e-43
Alignment gi|NP_006852.1| ras-related protein Rab-35 isoform 1 [Homo sapi... 165 5e-41
Alignment gi|NP_057215.3| ras-related protein Rab-10 [Homo sapiens]. 163 2e-40
Alignment gi|NP_112243.1| ras-related protein Rab-1B [Homo sapiens]. 162 4e-40
Alignment gi|NP_002861.1| ras-related protein Rab-13 [Homo sapiens]. 162 6e-40
Alignment gi|NP_057614.1| ras-related protein Rab-8B [Homo sapiens]. 162 6e-40
Alignment gi|NP_004152.1| ras-related protein Rab-1A isoform 1 [Homo sapi... 161 1e-39
Alignment gi|NP_055303.2| ras-related protein Rab-30 [Homo sapiens]. 158 6e-39
>ref|NP_067075.1| ras-related protein Rab-18 [Homo sapiens].
Length = 206
Score = 392 bits (1007), Expect = e-109
Identities = 196/206 (95%), Positives = 197/206 (95%)
Frame = +2
Query: 227 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 406
MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA
Sbjct: 1 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 60
Query: 407 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 586
IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV
Sbjct: 61 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 120
Query: 587 GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 766
GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN
Sbjct: 121 GNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 180
Query: 767 QNKGVKLTHREEXXXXXXXXXYCSVL 844
QNKGVKL+HREE YCSVL
Sbjct: 181 QNKGVKLSHREEGQGGGACGGYCSVL 206
>ref|NP_002856.1| ras-related protein Rab-2A isoform a [Homo sapiens].
Length = 212
Score = 174 bits (442), Expect = 9e-44
Identities = 92/183 (50%), Positives = 126/183 (68%), Gaps = 5/183 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + I++DG + KL IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRRDTF L WL + + N ++ ML+GNK D E+
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVI-MLIGNKSDLESR 126
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
REV + EG FAR+H ++F+E SAKT V+ AF +E+ EKI + G+++ N+ G
Sbjct: 127 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE--GVFDINNEANG 184
Query: 779 VKL 787
+K+
Sbjct: 185 IKI 187
>ref|NP_116235.2| ras-related protein Rab-2B isoform 1 [Homo sapiens].
Length = 216
Score = 172 bits (437), Expect = 3e-43
Identities = 91/183 (49%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K +IIG++GVGKS LLL+FTD F P TIGV+F + +++DG + KL IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 67
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
FR++T SYYRGA G +LVYD+TRR+TF L +WL + + + N ++ ML+GNK D E+
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVI-MLIGNKSDLESR 126
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF----EELVEKIIQTPGLWESENQNKG 778
R+V R EG FAR+H ++F+E SAKT V+ AF +E+ KI Q GL++ N+ G
Sbjct: 127 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ--GLFDVHNEANG 184
Query: 779 VKL 787
+K+
Sbjct: 185 IKI 187
>ref|NP_006852.1| ras-related protein Rab-35 isoform 1 [Homo sapiens].
Length = 201
Score = 165 bits (418), Expect = 5e-41
Identities = 90/193 (46%), Positives = 121/193 (62%), Gaps = 5/193 (2%)
Frame = +2
Query: 227 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 406
M D K+LIIG+SGVGKSSLLLRF D+TF TIGVDFK++T+ ++G K KL
Sbjct: 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 60
Query: 407 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 586
IWDTAGQERFRT+T +YYRG GVI+VYDVT ++FV + WL+E+ C +D+ +LV
Sbjct: 61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILV 118
Query: 587 GNK-IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP----GL 751
GNK D E + V+ + KFA + + E SAK V+ F + E +++
Sbjct: 119 GNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAK 178
Query: 752 WESENQNKGVKLT 790
+ + QN VKLT
Sbjct: 179 QQQQQQNDVVKLT 191
>ref|NP_057215.3| ras-related protein Rab-10 [Homo sapiens].
Length = 200
Score = 163 bits (413), Expect = 2e-40
Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ +L RF+DD F+ +TIG+DFK+KT+ + G K KL IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQER 70
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN- 610
F T+T SYYRGA G++LVYD+T +F + WL ++ + D+ ML+GNK D ++
Sbjct: 71 FHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEH-ANEDVERMLLGNKCDMDDK 129
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQN 772
R V + +G + AR+H + F E SAK ++ AF L E I++ + E ++N
Sbjct: 130 RVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
>ref|NP_112243.1| ras-related protein Rab-1B [Homo sapiens].
Length = 201
Score = 162 bits (410), Expect = 4e-40
Identities = 82/166 (49%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGKS LLLRF DDT+ +TIGVDFK++TI +DG KL IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 613
FRT+T SYYRGA G+I+VYDVT ++++ + WL E++ Y + N + +LVGNK D +
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASEN-VNKLLVGNKSDLTTK 128
Query: 614 E-VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG 748
+ VD +FA + F+E SAK V+ AF + +I + G
Sbjct: 129 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 174
>ref|NP_002861.1| ras-related protein Rab-13 [Homo sapiens].
Length = 203
Score = 162 bits (409), Expect = 6e-40
Identities = 78/175 (44%), Positives = 115/175 (65%), Gaps = 1/175 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ L++RF +D F+ +TIG+DFK++T+ ++G K KL +WDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 69
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-N 610
F+T+T +YYRGA G+ILVYD+T +F + NW+ ++ + + +L+GNK D E
Sbjct: 70 FKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAG-VERLLLGNKCDMEAK 128
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNK 775
R+V + + K AR+H + F E SAK+ V AF L I+ G S N NK
Sbjct: 129 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNK 183
>ref|NP_057614.1| ras-related protein Rab-8B [Homo sapiens].
Length = 207
Score = 162 bits (409), Expect = 6e-40
Identities = 77/162 (47%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGK+ LL RF++D F+ +TIG+DFK++TI +DG K KL IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 69
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KEN 610
FRT+T +YYRGA G++LVYD+T +F + NW+ +E + + +D+ M++GNK D +
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVERMILGNKCDMNDK 128
Query: 611 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 736
R+V + G K A + + F+E SAK+ V+ AF L I+
Sbjct: 129 RQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIM 170
>ref|NP_004152.1| ras-related protein Rab-1A isoform 1 [Homo sapiens].
Length = 205
Score = 161 bits (407), Expect = 1e-39
Identities = 85/181 (46%), Positives = 117/181 (64%), Gaps = 3/181 (1%)
Frame = +2
Query: 254 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 433
K+L+IG+SGVGKS LLLRF DDT+ +TIGVDFK++TI +DG KL IWDTAGQER
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72
Query: 434 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 613
FRT+T SYYRGA G+I+VYDVT +++F + WL E++ Y + N + +LVGNK D +
Sbjct: 73 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN-VNKLLVGNKCDLTTK 131
Query: 614 E-VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT--PGLWESENQNKGVK 784
+ VD +FA + F+E SAK V+ +F + +I + PG + VK
Sbjct: 132 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 191
Query: 785 L 787
+
Sbjct: 192 I 192
>ref|NP_055303.2| ras-related protein Rab-30 [Homo sapiens].
Length = 203
Score = 158 bits (400), Expect = 6e-39
Identities = 81/169 (47%), Positives = 110/169 (65%), Gaps = 1/169 (0%)
Frame = +2
Query: 233 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 412
ED KI++IG +GVGK+ L+ RFT F P ATIGVDF +KT+ ++G K KL IW
Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 63
Query: 413 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 592
DTAGQERFR++T SYYR A +IL YD+T ++F L WL E+E Y + N ++ +LVGN
Sbjct: 64 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGN 122
Query: 593 KID-KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 736
KID E REV + +F+ M ++E SAK D V+ F +L ++I
Sbjct: 123 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 171
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,197,019
Number of extensions: 847763
Number of successful extensions: 3874
Number of sequences better than 1.0e-05: 202
Number of HSP's gapped: 3719
Number of HSP's successfully gapped: 202
Length of query: 328
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,901,872
Effective search space: 3352921200
Effective search space used: 3352921200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013339
(986 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 620 e-175
Sscrofa_Chr09 194 6e-47
>Sscrofa_Chr10
|| Length = 79102373
Score = 620 bits (313), Expect = e-175
Identities = 316/317 (99%)
Strand = Plus / Plus
Query: 670 agaggcaagtgcaaaaacctgtgatggtgtacagtgtgcttttgaggagcttgttgaaaa 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53865602 agaggcaagtgcaaaaacctgtgatggtgtacagtgtgcttttgaggagcttgttgaaaa 53865661
Query: 730 gatcattcagacacctggactgtgggaaagtgagaaccagaataaaggagtgaaactgac 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53865662 gatcattcagacacctggactgtgggaaagtgagaaccagaataaaggagtgaaactgac 53865721
Query: 790 acacagggaagaaggtcaaggaggaggagcatgtggtggttattgttctgtgttataaac 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53865722 acacagggaagaaggtcaaggaggaggagcatgtggtggttattgttctgtgttataaac 53865781
Query: 850 tctgggaaactccatctcttgcatatttgatcagatagtgtcatctttctgtatataaac 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53865782 tctgggaaactccatctcttgcatatttgatcagatagtgtcatctttctgtatataaac 53865841
Query: 910 tctaactgctgttttagggaccttgcagtttgcacatatttgttttgtatcatggcagtg 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53865842 tctaactgctgttttagggaccttgcagtttgcacatatttgttttgtatcatggcagtg 53865901
Query: 970 aataattgccagaaatc 986
||||||||| |||||||
Sbjct: 53865902 aataattgcgagaaatc 53865918
Score = 583 bits (294), Expect = e-164
Identities = 294/294 (100%)
Strand = Plus / Plus
Query: 1 gtgagggcttaccttccggaaagacgcctgggactctgggtttgcgcagacgcagagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53835492 gtgagggcttaccttccggaaagacgcctgggactctgggtttgcgcagacgcagagcta 53835551
Query: 61 cgtccaggcggatctggggcgtcccgggctcctgcaacctaaacacccggtgtgaaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53835552 cgtccaggcggatctggggcgtcccgggctcctgcaacctaaacacccggtgtgaaagga 53835611
Query: 121 aggaggcagcggcggggctgggcgctgcgcatgcgcgggcagctcccccacgaagggttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53835612 aggaggcagcggcggggctgggcgctgcgcatgcgcgggcagctcccccacgaagggttg 53835671
Query: 181 agagagtcggaccggcgcggccaggcgggcgcggagcggggtcaggatggacgaggacgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53835672 agagagtcggaccggcgcggccaggcgggcgcggagcggggtcaggatggacgaggacgt 53835731
Query: 241 gctgactacgctgaagatcctcatcatcggcgagagtggcgtgggcaagtccag 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53835732 gctgactacgctgaagatcctcatcatcggcgagagtggcgtgggcaagtccag 53835785
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 484 agtttatgatgtcacaagaagagacacctttgttaagctggataattggttaaatgaatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53862833 agtttatgatgtcacaagaagagacacctttgttaagctggataattggttaaatgaatt 53862892
Query: 544 ggaaacatactgtacaagaaatgacatagtaaacatgctagttggaaataaaattgataa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53862893 ggaaacatactgtacaagaaatgacatagtaaacatgctagttggaaataaaattgataa 53862952
Query: 604 gg 605
||
Sbjct: 53862953 gg 53862954
Score = 167 bits (84), Expect = 1e-38
Identities = 99/104 (95%)
Strand = Plus / Plus
Query: 20 aaagacgcctgggactctgggtttgcgcagacgcagagctacgtccaggcggatctgggg 79
|||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct: 44066373 aaagacgcctgggactttgggtttgcgcaggcgcagagctacgtccaagcggaactgggg 44066432
Query: 80 cgtcccgggctcctgcaacctaaacacccggtgtgaaaggaagg 123
||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 44066433 cgtcccgggctcctgcaacctgaacacccggtgtgaaaggaagg 44066476
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 412 ggatactgctggtcaagaaaggttcagaacattaactcccagctattatagaggtgcaca 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53861380 ggatactgctggtcaagaaaggttcagaacattaactcccagctattatagaggtgcaca 53861439
Query: 472 gggtgttatattag 485
||||||||||||||
Sbjct: 53861440 gggtgttatattag 53861453
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 603 aggaaaatcgtgaagttgacagaaatgaaggcctgaaatttgcacgaaagcattccatgt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53863026 aggaaaatcgtgaagttgacagaaatgaaggcctgaaatttgcacgaaagcattccatgt 53863085
Query: 663 tatttatag 671
|||||||||
Sbjct: 53863086 tatttatag 53863094
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 349 aggtgttgactttaaggtgaaaacaatttcagtggatggaaataaggctaaacttgcaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53856829 aggtgttgactttaaggtgaaaacaatttcagtggatggaaataaggctaaacttgcaat 53856888
Query: 409 atggg 413
|||||
Sbjct: 53856889 atggg 53856893
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 349 aggtgttgactttaaggtgaaaacaatttcagtggatggaaataaggctaaacttgcaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49755165 aggtgttgactttaaggtgaaaacaatttcagtggatggaaataaggctaaacttgcaat 49755224
Query: 409 a 409
|
Sbjct: 49755225 a 49755225
Score = 119 bits (60), Expect = 3e-24
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 223 caggatggacgaggacgtgctgactacgctgaagatcctcatcatcggcgagagtggcgt 282
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 49728228 caggatggacgaggacgtgctgactacgctgaagatcctcaccatcggcgagagtggcgc 49728287
Query: 283 gggcaagtccag 294
||||||| ||||
Sbjct: 49728288 gggcaagcccag 49728299
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 293 agcctgctcttgaggttcacagatgatacttttgatccagaacttgcagcaacaataggt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53840822 agcctgctcttgaggttcacagatgatacttttgatccagaacttgcagcaacaataggt 53840881
Score = 111 bits (56), Expect = 7e-22
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 221 gtcaggatggacgaggacgtgctgactacgctgaagatcctcatcatcggcgagagtggc 280
|||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||
Sbjct: 44066567 gtcaggatggacgaggacgtgctgaccaccctgaagatcctcaccatcggcgagagtggc 44066626
Query: 281 gtgggcaa 288
||||||||
Sbjct: 44066627 gtgggcaa 44066634
Score = 111 bits (56), Expect = 7e-22
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 293 agcctgctcttgaggttcacagatgatacttttgatccagaacttgcagcaacaataggt 352
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 44070566 agcctgctcttgaggttcacagatgatacttttgatctagaacttgcagcaacaataggt 44070625
Score = 105 bits (53), Expect = 5e-20
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 293 agcctgctcttgaggttcacagatgatacttttgatccagaacttgcagcaacaataggt 352
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 49733019 agcctgctcttgaggttcacagatgatacttttgatccggaacttgcaacaacaataggt 49733078
Query: 353 g 353
|
Sbjct: 49733079 g 49733079
Score = 83.8 bits (42), Expect = 2e-13
Identities = 133/161 (82%), Gaps = 8/161 (4%)
Strand = Plus / Plus
Query: 3 gagggcttaccttccggaaagacgcctgggactctgggttt--gcgcagacgcagagcta 60
||||||||||| || ||| |||||||||||||||| ||||| ||||||||| || ||||
Sbjct: 49727877 gagggcttaccgtc-ggagagacgcctgggactctaggtttcggcgcagacggagggcta 49727935
Query: 61 cgtccaggcggatctggggcgtcccgggctcctgcaacctaaacacccggtgtgaaagga 120
| |||||||| | | |||||||| ||||||| ||| | ||| | ||||||||||||
Sbjct: 49727936 catccaggcgtaaccggggcgtcggaggctcctacaatatgaactctaggtgtgaaagga 49727995
Query: 121 aggaggcagc-----ggcggggctgggcgctgcgcatgcgc 156
||| |||||| ||||||||||||||||||||||||||
Sbjct: 49727996 aggtggcagccgcggggcggggctgggcgctgcgcatgcgc 49728036
>Sscrofa_Chr09
|| Length = 153670197
Score = 194 bits (98), Expect = 6e-47
Identities = 122/130 (93%)
Strand = Plus / Minus
Query: 221 gtcaggatggacgaggacgtgctgactacgctgaagatcctcatcatcggcgagagtggc 280
||||||| |||||||||||||||||| || ||||||||||| | |||| ||||| |||||
Sbjct: 8846822 gtcaggacggacgaggacgtgctgaccaccctgaagatcctgaccatctgcgagggtggc 8846763
Query: 281 gtgggcaagtccagcctgctcttgaggttcacagatgatacttttgatccagaacttgca 340
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8846762 gtgggcaagtccagcctgctcttgaggttcacagatgatacttttgatccagaacttgga 8846703
Query: 341 gcaacaatag 350
||||||||||
Sbjct: 8846702 gcaacaatag 8846693
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,575,659
Number of extensions: 240
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 15
Length of query: 986
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 965
Effective length of database: 2,808,413,156
Effective search space: 2710118695540
Effective search space used: 2710118695540
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)