Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013341
(936 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068916.1| myb-related protein B [Bos taurus]. 491 e-139
Alignment gi|NP_788808.2| v-myb myeloblastosis viral oncogene homolog (av... 292 3e-79
Alignment gi|NP_778220.1| transcriptional activator Myb [Bos taurus]. 280 1e-75
Alignment gi|XP_589529.4| PREDICTED: MYB-related protein B-like [Bos taur... 95 8e-20
Alignment gi|XP_002691664.1| PREDICTED: MYB-related protein B-like [Bos t... 83 4e-16
Alignment gi|NP_001070010.1| cell division cycle 5-like protein [Bos taur... 70 3e-12
Alignment gi|XP_002686765.1| PREDICTED: cyclin D binding myb-like transcr... 50 4e-06
Alignment gi|XP_869914.1| PREDICTED: cyclin D binding myb-like transcript... 50 4e-06
>ref|NP_001068916.1| myb-related protein B [Bos taurus].
Length = 695
Score = 491 bits (1265), Expect = e-139
Identities = 235/243 (96%), Positives = 236/243 (97%), Gaps = 1/243 (0%)
Frame = +3
Query: 210 MSRRTRGEELDELHYQDTDSDVPEQRDSKCKVKWTQEEDEQLRALVKQFGQQDWKFLASH 389
MSRRTRGEELDELHYQDTDSDVPEQRDSKCKVKWTQEEDEQLRALVKQFGQQDWKFLASH
Sbjct: 1 MSRRTRGEELDELHYQDTDSDVPEQRDSKCKVKWTQEEDEQLRALVKQFGQQDWKFLASH 60
Query: 390 FPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQ 569
FPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQ
Sbjct: 61 FPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQ 120
Query: 570 CRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTI 749
CRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTI
Sbjct: 121 CRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTI 180
Query: 750 KRKVDTGGFLSESRDCKPPMYLLLELEDKD-RQSAPPSEGQGSLVTSWPPAFPALKGGES 926
KRKVDTGGFLSESRD KP MYLLLELEDKD RQSAP SEGQGS+VTSWPPAFPALK ES
Sbjct: 181 KRKVDTGGFLSESRDSKPSMYLLLELEDKDGRQSAPSSEGQGSVVTSWPPAFPALKEEES 240
Query: 927 IEE 935
EE
Sbjct: 241 SEE 243
>ref|NP_788808.2| v-myb myeloblastosis viral oncogene homolog (avian)-like 1 [Bos
taurus].
Length = 752
Score = 292 bits (748), Expect = 3e-79
Identities = 133/196 (67%), Positives = 166/196 (84%), Gaps = 4/196 (2%)
Frame = +3
Query: 210 MSRRTRGE-ELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQQDWKF 377
M++R+R E E D+L Y D D +VP+Q+ K +VKWT++ED++L+ LV+Q G DW
Sbjct: 1 MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTL 60
Query: 378 LASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGR 557
+ASH NR+D QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W+LIAKHLKGR
Sbjct: 61 IASHLQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGR 120
Query: 558 LGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 737
+GKQCRERWHNHLNPEVKKS WTEEEDRII EAHK LGNRWAEIAK+LPGRTDN++KNHW
Sbjct: 121 IGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHW 180
Query: 738 NSTIKRKVDTGGFLSE 785
NST++RKV+ G+L +
Sbjct: 181 NSTMRRKVEQEGYLQD 196
>ref|NP_778220.1| transcriptional activator Myb [Bos taurus].
Length = 555
Score = 280 bits (717), Expect = 1e-75
Identities = 131/208 (62%), Positives = 163/208 (78%), Gaps = 9/208 (4%)
Frame = +3
Query: 210 MSRRTR------GEELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQ 362
M+RR R E+ +++ D D D + K K +WT+EEDE+L+ LV+Q G
Sbjct: 1 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGT 60
Query: 363 QDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK 542
DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W++IAK
Sbjct: 61 DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAK 120
Query: 543 HLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNA 722
HLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AHK LGNRWAEIAK+LPGRTDNA
Sbjct: 121 HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNA 180
Query: 723 VKNHWNSTIKRKVDTGGFLSESRDCKPP 806
+KNHWNST++RKV+ G+L ES P
Sbjct: 181 IKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|XP_589529.4| PREDICTED: MYB-related protein B-like [Bos taurus].
Length = 1526
Score = 95.1 bits (235), Expect = 8e-20
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQF---GQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKE 476
+WT+EED L LV+ ++ + + R Q YRW + L+P L KG W E
Sbjct: 350 EWTEEEDRMLTRLVQAMRVGSHIPYRRIVYYMEGRDSMQLIYRWTKSLDPSLRKGLWAPE 409
Query: 477 EDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEA 656
ED K+++ V KYG + W I + + GR QCR+R+ L+ +KK W +E + + E
Sbjct: 410 EDAKLLQAVAKYGEQDWFKIREEVPGRSDAQCRDRYLRRLHFSLKKGRWNSKEVKKLIEL 469
Query: 657 HKVLG-NRWAEIAKMLPGRTDNAVKNHW 737
+ G WA+IA LP R+ + + W
Sbjct: 470 IEKYGVGHWAKIASELPHRSGSQCLSKW 497
Score = 90.9 bits (224), Expect = 1e-18
Identities = 48/119 (40%), Positives = 66/119 (55%)
Frame = +3
Query: 228 GEELDELHYQDTDSDVPEQRDSKCKVKWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTD 407
G + +L Y+ T S P R K W EED +L V ++G+QDW + P R+D
Sbjct: 383 GRDSMQLIYRWTKSLDPSLR----KGLWAPEEDAKLLQAVAKYGEQDWFKIREEVPGRSD 438
Query: 408 QQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERW 584
QC+ R+LR L+ L KG W +E +K+IEL++KYG W IA L R G QC +W
Sbjct: 439 AQCRDRYLRRLHFSLKKGRWNSKEVKKLIELIEKYGVGHWAKIASELPHRSGSQCLSKW 497
Score = 51.6 bits (122), Expect = 1e-06
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 399 RTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHL-KGRLGKQCR 575
R+ ++ + W +P + K W+++E ++ + K+G W IA+ L R QC
Sbjct: 277 RSTEEIRKFWQNHEHPSINKQEWSEQEVAQLKAVAAKHGHLDWQSIAEELGTHRSAFQCL 336
Query: 576 ERWHNHLNPEVKKSCWTEEEDRII 647
+R+ H NP +K+ WTEEEDR++
Sbjct: 337 QRYQQH-NPALKRREWTEEEDRML 359
>ref|XP_002691664.1| PREDICTED: MYB-related protein B-like [Bos taurus].
Length = 1484
Score = 82.8 bits (203), Expect = 4e-16
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQF---GQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKE 476
+WT+EED L LV+ ++ + + R Q YRW + L+P L KG W E
Sbjct: 350 EWTEEEDRMLTRLVQAMRVGSHIPYRRIVYYMEGRDSMQLIYRWTKSLDPSLRKGLWAPE 409
Query: 477 EDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICE 653
ED K+++ V KYG + W I + + GR QCR+R+ L+ +KK W +E + + E
Sbjct: 410 EDAKLLQAVAKYGEQDWFKIREEVPGRSDAQCRDRYLRRLHFSLKKGRWNSKEVKKLIE 468
Score = 79.3 bits (194), Expect = 4e-15
Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 5/207 (2%)
Frame = +3
Query: 300 KVKWTQEEDEQLRALVKQFGQQDWKFLASHF-PNRTDQQCQYRWLRVLNPDLVKGPWTKE 476
K +W+++E QL+A+ + G DW+ +A +R+ QC R+ + NP L + WT+E
Sbjct: 296 KQEWSEQEVAQLKAVAAKHGHLDWQSIAEELGTHRSAFQCLQRYQQH-NPALKRREWTEE 354
Query: 477 EDQKVIELVK--KYGTK-QWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRII 647
ED+ + LV+ + G+ + I +++GR Q RW L+P ++K W EED +
Sbjct: 355 EDRMLTRLVQAMRVGSHIPYRRIVYYMEGRDSMQLIYRWTKSLDPSLRKGLWAPEEDAKL 414
Query: 648 CEAHKVLGNR-WAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESRDCKPPMYLLLE 824
+A G + W +I + +PGR+D ++ + + + G + S++ K + L+E
Sbjct: 415 LQAVAKYGEQDWFKIREEVPGRSDAQCRDRYLRRLHFSLKKGRW--NSKEVK-KLIELIE 471
Query: 825 LEDKDRQSAPPSEGQGSLVTSWPPAFP 905
R AP E + +SW + P
Sbjct: 472 KYGVGRAGAPAVEAAAN--SSWEDSEP 496
Score = 71.6 bits (174), Expect = 9e-13
Identities = 39/96 (40%), Positives = 56/96 (58%)
Frame = +3
Query: 228 GEELDELHYQDTDSDVPEQRDSKCKVKWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTD 407
G + +L Y+ T S P R K W EED +L V ++G+QDW + P R+D
Sbjct: 383 GRDSMQLIYRWTKSLDPSLR----KGLWAPEEDAKLLQAVAKYGEQDWFKIREEVPGRSD 438
Query: 408 QQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYG 515
QC+ R+LR L+ L KG W +E +K+IEL++KYG
Sbjct: 439 AQCRDRYLRRLHFSLKKGRWNSKEVKKLIELIEKYG 474
Score = 51.6 bits (122), Expect = 1e-06
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 399 RTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHL-KGRLGKQCR 575
R+ ++ + W +P + K W+++E ++ + K+G W IA+ L R QC
Sbjct: 277 RSTEEIRKFWQNHEHPSINKQEWSEQEVAQLKAVAAKHGHLDWQSIAEELGTHRSAFQCL 336
Query: 576 ERWHNHLNPEVKKSCWTEEEDRII 647
+R+ H NP +K+ WTEEEDR++
Sbjct: 337 QRYQQH-NPALKRREWTEEEDRML 359
>ref|NP_001070010.1| cell division cycle 5-like protein [Bos taurus].
Length = 802
Score = 70.1 bits (170), Expect = 3e-12
Identities = 38/109 (34%), Positives = 60/109 (55%)
Frame = +3
Query: 309 WTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQK 488
W EDE L+A V ++G+ W +AS ++ +QC+ RW L+P + K W++EE++K
Sbjct: 11 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEK 70
Query: 489 VIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEE 635
++ L K T QW IA + GR QC E + L+ ++ EEE
Sbjct: 71 LLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD--NEEE 115
Score = 69.7 bits (169), Expect = 3e-12
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = +3
Query: 459 GPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEED 638
G W ED+ + V KYG QW+ IA L + KQC+ RW+ L+P +KK+ W+ EE+
Sbjct: 9 GVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEE 68
Query: 639 RIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 737
+ K++ +W IA ++ GRT H+
Sbjct: 69 EKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHY 100
>ref|XP_002686765.1| PREDICTED: cyclin D binding myb-like transcription factor 1 [Bos
taurus].
Length = 761
Score = 49.7 bits (117), Expect = 4e-06
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQ 485
K+T EE E+L+ L + G DW + + R+ + R R++ G WT+EE++
Sbjct: 226 KYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDR-CRLMKDTCNTGKWTEEEEK 282
Query: 486 KVIELVKKYGTKQ----------WTLIAKHLKGRLGKQCRERWHNHLN-PEVKKSCWTEE 632
++ E+V + + + W +A+ + R KQCR +W N+LN + + WT+E
Sbjct: 283 RLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKE 342
Query: 633 ED 638
++
Sbjct: 343 DE 344
>ref|XP_869914.1| PREDICTED: cyclin D binding myb-like transcription factor 1 isoform
2 [Bos taurus].
Length = 761
Score = 49.7 bits (117), Expect = 4e-06
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQ 485
K+T EE E+L+ L + G DW + + R+ + R R++ G WT+EE++
Sbjct: 226 KYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDR-CRLMKDTCNTGKWTEEEEK 282
Query: 486 KVIELVKKYGTKQ----------WTLIAKHLKGRLGKQCRERWHNHLN-PEVKKSCWTEE 632
++ E+V + + + W +A+ + R KQCR +W N+LN + + WT+E
Sbjct: 283 RLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKE 342
Query: 633 ED 638
++
Sbjct: 343 DE 344
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,145,075
Number of extensions: 903902
Number of successful extensions: 4598
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4416
Number of HSP's successfully gapped: 15
Length of query: 312
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,306,398
Effective search space: 3004343580
Effective search space used: 3004343580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013341
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013341
(936 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534424.2| PREDICTED: similar to Myb-related protein B (B-... 464 e-131
Alignment gi|XP_544108.2| PREDICTED: similar to Myb-related protein A (A-... 292 3e-79
Alignment gi|XP_858859.1| PREDICTED: similar to Myb-related protein A (A-... 292 3e-79
Alignment gi|XP_541112.2| PREDICTED: similar to myeloblastosis proto-onco... 283 1e-76
Alignment gi|XP_548372.2| PREDICTED: similar to small nuclear RNA activat... 101 9e-22
Alignment gi|XP_532156.2| PREDICTED: similar to CDC5-like [Canis familiar... 70 3e-12
Alignment gi|XP_859619.1| PREDICTED: similar to cyclin D binding myb-like... 49 9e-06
Alignment gi|XP_859588.1| PREDICTED: similar to cyclin D binding myb-like... 49 9e-06
Alignment gi|XP_532449.2| PREDICTED: similar to cyclin D binding myb-like... 49 9e-06
Alignment gi|XP_859522.1| PREDICTED: similar to cyclin D binding myb-like... 49 9e-06
>ref|XP_534424.2| PREDICTED: similar to Myb-related protein B (B-Myb) [Canis
familiaris].
Length = 883
Score = 464 bits (1194), Expect = e-131
Identities = 219/241 (90%), Positives = 226/241 (93%), Gaps = 1/241 (0%)
Frame = +3
Query: 216 RRTRGEELDELHYQDTDSDVPEQRDSKCKVKWTQEEDEQLRALVKQFGQQDWKFLASHFP 395
R EELDELHYQDTDSDVPEQRDSKCKVKWT EEDEQLR LV+QFGQQDWKFLASHFP
Sbjct: 186 RSRSSEELDELHYQDTDSDVPEQRDSKCKVKWTHEEDEQLRTLVRQFGQQDWKFLASHFP 245
Query: 396 NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCR 575
NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCR
Sbjct: 246 NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCR 305
Query: 576 ERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKR 755
ERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKR
Sbjct: 306 ERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKR 365
Query: 756 KVDTGGFLSESRDCKPPMYLLLELEDKDR-QSAPPSEGQGSLVTSWPPAFPALKGGESIE 932
KVDTGGFLSES+DCKPP+YLLLELEDK+ QSA P E QGSL+T+WPPA PA+K ES E
Sbjct: 366 KVDTGGFLSESKDCKPPVYLLLELEDKEGCQSARPVEEQGSLMTNWPPALPAMKEEESSE 425
Query: 933 E 935
E
Sbjct: 426 E 426
>ref|XP_544108.2| PREDICTED: similar to Myb-related protein A (A-Myb) isoform 1
[Canis familiaris].
Length = 751
Score = 292 bits (748), Expect = 3e-79
Identities = 133/196 (67%), Positives = 166/196 (84%), Gaps = 4/196 (2%)
Frame = +3
Query: 210 MSRRTRGE-ELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQQDWKF 377
M++R+R E E D+L Y D D +VP+Q+ K +VKWT++ED++L+ LV+Q G DW
Sbjct: 1 MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTL 60
Query: 378 LASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGR 557
+ASH NR+D QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W+LIAKHLKGR
Sbjct: 61 IASHLQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGR 120
Query: 558 LGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 737
+GKQCRERWHNHLNPEVKKS WTEEEDRII EAHK LGNRWAEIAK+LPGRTDN++KNHW
Sbjct: 121 IGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHW 180
Query: 738 NSTIKRKVDTGGFLSE 785
NST++RKV+ G+L +
Sbjct: 181 NSTMRRKVEQEGYLQD 196
>ref|XP_858859.1| PREDICTED: similar to Myb-related protein A (A-Myb) isoform 3
[Canis familiaris].
Length = 692
Score = 292 bits (748), Expect = 3e-79
Identities = 133/196 (67%), Positives = 166/196 (84%), Gaps = 4/196 (2%)
Frame = +3
Query: 210 MSRRTRGE-ELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQQDWKF 377
M++R+R E E D+L Y D D +VP+Q+ K +VKWT++ED++L+ LV+Q G DW
Sbjct: 1 MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTL 60
Query: 378 LASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGR 557
+ASH NR+D QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W+LIAKHLKGR
Sbjct: 61 IASHLQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGR 120
Query: 558 LGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 737
+GKQCRERWHNHLNPEVKKS WTEEEDRII EAHK LGNRWAEIAK+LPGRTDN++KNHW
Sbjct: 121 IGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHW 180
Query: 738 NSTIKRKVDTGGFLSE 785
NST++RKV+ G+L +
Sbjct: 181 NSTMRRKVEQEGYLQD 196
>ref|XP_541112.2| PREDICTED: similar to myeloblastosis proto-oncogene product isoform
2 [Canis familiaris].
Length = 885
Score = 283 bits (725), Expect = 1e-76
Identities = 132/208 (63%), Positives = 164/208 (78%), Gaps = 9/208 (4%)
Frame = +3
Query: 210 MSRRTR------GEELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQ 362
M+RR R E+ +++ D D D + K K +WT+EEDE+L+ LV+Q G
Sbjct: 125 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGT 184
Query: 363 QDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK 542
DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W++IAK
Sbjct: 185 DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAK 244
Query: 543 HLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNA 722
HLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AHK LGNRWAEIAK+LPGRTDNA
Sbjct: 245 HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNA 304
Query: 723 VKNHWNSTIKRKVDTGGFLSESRDCKPP 806
+KNHWNST++RKV+ G+L ES PP
Sbjct: 305 IKNHWNSTMRRKVEQEGYLQESSKASPP 332
>ref|XP_548372.2| PREDICTED: similar to small nuclear RNA activating complex,
polypeptide 4, 190kDa [Canis familiaris].
Length = 1949
Score = 101 bits (252), Expect = 9e-22
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 4/159 (2%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQF---GQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKE 476
+WT+EED L LV++ ++ + + R Q YRW + L+P L KG W E
Sbjct: 778 EWTREEDRLLTQLVQEMRVGSHIPYRRIVYYMEGRDSMQLIYRWTKSLDPSLKKGFWAPE 837
Query: 477 EDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEA 656
ED K+++ V KYG + W I + + GR QCR+R+ L+ +KK W E+ + E
Sbjct: 838 EDAKLLQAVAKYGEQDWFKIREEVPGRSDAQCRDRYLRRLHFSLKKGRWNASEEEKLVEL 897
Query: 657 HKVLG-NRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTG 770
+ G WA+IA LP RT + + W +++K G
Sbjct: 898 IEKYGVGHWAKIASELPHRTGSQCLSKWKIMVRKKQSRG 936
Score = 90.9 bits (224), Expect = 2e-18
Identities = 46/119 (38%), Positives = 66/119 (55%)
Frame = +3
Query: 228 GEELDELHYQDTDSDVPEQRDSKCKVKWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTD 407
G + +L Y+ T S P + K W EED +L V ++G+QDW + P R+D
Sbjct: 811 GRDSMQLIYRWTKSLDPSLK----KGFWAPEEDAKLLQAVAKYGEQDWFKIREEVPGRSD 866
Query: 408 QQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERW 584
QC+ R+LR L+ L KG W E++K++EL++KYG W IA L R G QC +W
Sbjct: 867 AQCRDRYLRRLHFSLKKGRWNASEEEKLVELIEKYGVGHWAKIASELPHRTGSQCLSKW 925
Score = 53.5 bits (127), Expect = 3e-07
Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Frame = +3
Query: 342 LVKQFGQQDWKFLAS-HFP-NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYG 515
L + DW+ +++ +F +R+ ++ + W +P + K W+ +E ++ + K+G
Sbjct: 684 LGNRLDNHDWEKISNVNFEGSRSAEEIRKFWQNFEHPSINKQEWSGQEVDQLKAIAAKHG 743
Query: 516 TKQWTLIAKHL-KGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVL--GNR--W 680
QW IAK L R QC +++ H N +K+ WT EEDR++ + + + G+ +
Sbjct: 744 HLQWQTIAKELGTNRSAFQCLQKYQQH-NKALKRKEWTREEDRLLTQLVQEMRVGSHIPY 802
Query: 681 AEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESRDCK 800
I + GR + W ++ + GF + D K
Sbjct: 803 RRIVYYMEGRDSMQLIYRWTKSLDPSLKK-GFWAPEEDAK 841
>ref|XP_532156.2| PREDICTED: similar to CDC5-like [Canis familiaris].
Length = 908
Score = 70.1 bits (170), Expect = 3e-12
Identities = 38/109 (34%), Positives = 60/109 (55%)
Frame = +3
Query: 309 WTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQK 488
W EDE L+A V ++G+ W +AS ++ +QC+ RW L+P + K W++EE++K
Sbjct: 117 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEK 176
Query: 489 VIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEE 635
++ L K T QW IA + GR QC E + L+ ++ EEE
Sbjct: 177 LLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD--NEEE 221
Score = 69.7 bits (169), Expect = 4e-12
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = +3
Query: 459 GPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEED 638
G W ED+ + V KYG QW+ IA L + KQC+ RW+ L+P +KK+ W+ EE+
Sbjct: 115 GVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEE 174
Query: 639 RIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 737
+ K++ +W IA ++ GRT H+
Sbjct: 175 EKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHY 206
>ref|XP_859619.1| PREDICTED: similar to cyclin D binding myb-like transcription
factor 1 isoform 10 [Canis familiaris].
Length = 762
Score = 48.5 bits (114), Expect = 9e-06
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQ 485
K+T EE E+L+ L + G DW + + R+ + R R++ G WT++E++
Sbjct: 226 KYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDR-CRLMKDTCNTGKWTEDEEK 282
Query: 486 KVIELVKKYGTKQ----------WTLIAKHLKGRLGKQCRERWHNHLN-PEVKKSCWTEE 632
++ E+V + + + W +A+ + R KQCR +W N+LN + + WT+E
Sbjct: 283 RLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKE 342
Query: 633 ED 638
++
Sbjct: 343 DE 344
>ref|XP_859588.1| PREDICTED: similar to cyclin D binding myb-like transcription
factor 1 isoform 9 [Canis familiaris].
Length = 714
Score = 48.5 bits (114), Expect = 9e-06
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQ 485
K+T EE E+L+ L + G DW + + R+ + R R++ G WT++E++
Sbjct: 226 KYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDR-CRLMKDTCNTGKWTEDEEK 282
Query: 486 KVIELVKKYGTKQ----------WTLIAKHLKGRLGKQCRERWHNHLN-PEVKKSCWTEE 632
++ E+V + + + W +A+ + R KQCR +W N+LN + + WT+E
Sbjct: 283 RLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKE 342
Query: 633 ED 638
++
Sbjct: 343 DE 344
>ref|XP_532449.2| PREDICTED: similar to cyclin D binding myb-like transcription
factor 1 isoform 1 [Canis familiaris].
Length = 762
Score = 48.5 bits (114), Expect = 9e-06
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQ 485
K+T EE E+L+ L + G DW + + R+ + R R++ G WT++E++
Sbjct: 226 KYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDR-CRLMKDTCNTGKWTEDEEK 282
Query: 486 KVIELVKKYGTKQ----------WTLIAKHLKGRLGKQCRERWHNHLN-PEVKKSCWTEE 632
++ E+V + + + W +A+ + R KQCR +W N+LN + + WT+E
Sbjct: 283 RLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKE 342
Query: 633 ED 638
++
Sbjct: 343 DE 344
>ref|XP_859522.1| PREDICTED: similar to cyclin D binding myb-like transcription
factor 1 isoform 8 [Canis familiaris].
Length = 736
Score = 48.5 bits (114), Expect = 9e-06
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQ 485
K+T EE E+L+ L + G DW + + R+ + R R++ G WT++E++
Sbjct: 226 KYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDR-CRLMKDTCNTGKWTEDEEK 282
Query: 486 KVIELVKKYGTKQ----------WTLIAKHLKGRLGKQCRERWHNHLN-PEVKKSCWTEE 632
++ E+V + + + W +A+ + R KQCR +W N+LN + + WT+E
Sbjct: 283 RLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKE 342
Query: 633 ED 638
++
Sbjct: 343 DE 344
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,395,483
Number of extensions: 890812
Number of successful extensions: 4986
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4785
Number of HSP's successfully gapped: 17
Length of query: 312
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 209
Effective length of database: 15,440,896
Effective search space: 3227147264
Effective search space used: 3227147264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013341
(936 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121237.2| PREDICTED: transcriptional activator Myb-lik... 280 6e-76
Alignment gi|XP_003121233.1| PREDICTED: transcriptional activator Myb [Su... 280 6e-76
Alignment gi|XP_003353255.1| PREDICTED: transcriptional activator Myb [Su... 280 6e-76
Alignment gi|XP_003121232.1| PREDICTED: transcriptional activator Myb [Su... 280 6e-76
Alignment gi|XP_003121234.1| PREDICTED: transcriptional activator Myb [Su... 280 6e-76
Alignment gi|XP_001928964.2| PREDICTED: transcriptional activator Myb iso... 280 6e-76
Alignment gi|XP_001928961.1| PREDICTED: transcriptional activator Myb iso... 280 6e-76
Alignment gi|XP_003355094.1| PREDICTED: hypothetical protein LOC100622377... 113 2e-25
Alignment gi|XP_001929632.1| PREDICTED: cell division cycle 5-like protei... 70 2e-12
Alignment gi|XP_003357531.1| PREDICTED: cyclin-D-binding Myb-like transcr... 50 2e-06
>ref|XP_003121237.2| PREDICTED: transcriptional activator Myb-like [Sus scrofa].
Length = 333
Score = 280 bits (717), Expect = 6e-76
Identities = 131/208 (62%), Positives = 163/208 (78%), Gaps = 9/208 (4%)
Frame = +3
Query: 210 MSRRTR------GEELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQ 362
M+RR R E+ +++ D D D + K K +WT+EEDE+L+ LV+Q G
Sbjct: 1 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGT 60
Query: 363 QDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK 542
DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W++IAK
Sbjct: 61 DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAK 120
Query: 543 HLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNA 722
HLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AHK LGNRWAEIAK+LPGRTDNA
Sbjct: 121 HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNA 180
Query: 723 VKNHWNSTIKRKVDTGGFLSESRDCKPP 806
+KNHWNST++RKV+ G+L ES P
Sbjct: 181 IKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|XP_003121233.1| PREDICTED: transcriptional activator Myb [Sus scrofa].
Length = 555
Score = 280 bits (717), Expect = 6e-76
Identities = 131/208 (62%), Positives = 163/208 (78%), Gaps = 9/208 (4%)
Frame = +3
Query: 210 MSRRTR------GEELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQ 362
M+RR R E+ +++ D D D + K K +WT+EEDE+L+ LV+Q G
Sbjct: 1 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGT 60
Query: 363 QDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK 542
DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W++IAK
Sbjct: 61 DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAK 120
Query: 543 HLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNA 722
HLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AHK LGNRWAEIAK+LPGRTDNA
Sbjct: 121 HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNA 180
Query: 723 VKNHWNSTIKRKVDTGGFLSESRDCKPP 806
+KNHWNST++RKV+ G+L ES P
Sbjct: 181 IKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|XP_003353255.1| PREDICTED: transcriptional activator Myb [Sus scrofa].
Length = 603
Score = 280 bits (717), Expect = 6e-76
Identities = 131/208 (62%), Positives = 163/208 (78%), Gaps = 9/208 (4%)
Frame = +3
Query: 210 MSRRTR------GEELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQ 362
M+RR R E+ +++ D D D + K K +WT+EEDE+L+ LV+Q G
Sbjct: 1 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGT 60
Query: 363 QDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK 542
DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W++IAK
Sbjct: 61 DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAK 120
Query: 543 HLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNA 722
HLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AHK LGNRWAEIAK+LPGRTDNA
Sbjct: 121 HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNA 180
Query: 723 VKNHWNSTIKRKVDTGGFLSESRDCKPP 806
+KNHWNST++RKV+ G+L ES P
Sbjct: 181 IKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|XP_003121232.1| PREDICTED: transcriptional activator Myb [Sus scrofa].
Length = 605
Score = 280 bits (717), Expect = 6e-76
Identities = 131/208 (62%), Positives = 163/208 (78%), Gaps = 9/208 (4%)
Frame = +3
Query: 210 MSRRTR------GEELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQ 362
M+RR R E+ +++ D D D + K K +WT+EEDE+L+ LV+Q G
Sbjct: 1 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGT 60
Query: 363 QDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK 542
DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W++IAK
Sbjct: 61 DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAK 120
Query: 543 HLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNA 722
HLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AHK LGNRWAEIAK+LPGRTDNA
Sbjct: 121 HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNA 180
Query: 723 VKNHWNSTIKRKVDTGGFLSESRDCKPP 806
+KNHWNST++RKV+ G+L ES P
Sbjct: 181 IKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|XP_003121234.1| PREDICTED: transcriptional activator Myb [Sus scrofa].
Length = 745
Score = 280 bits (717), Expect = 6e-76
Identities = 131/208 (62%), Positives = 163/208 (78%), Gaps = 9/208 (4%)
Frame = +3
Query: 210 MSRRTR------GEELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQ 362
M+RR R E+ +++ D D D + K K +WT+EEDE+L+ LV+Q G
Sbjct: 1 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGT 60
Query: 363 QDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK 542
DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W++IAK
Sbjct: 61 DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAK 120
Query: 543 HLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNA 722
HLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AHK LGNRWAEIAK+LPGRTDNA
Sbjct: 121 HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNA 180
Query: 723 VKNHWNSTIKRKVDTGGFLSESRDCKPP 806
+KNHWNST++RKV+ G+L ES P
Sbjct: 181 IKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|XP_001928964.2| PREDICTED: transcriptional activator Myb isoform 2 [Sus scrofa].
Length = 761
Score = 280 bits (717), Expect = 6e-76
Identities = 131/208 (62%), Positives = 163/208 (78%), Gaps = 9/208 (4%)
Frame = +3
Query: 210 MSRRTR------GEELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQ 362
M+RR R E+ +++ D D D + K K +WT+EEDE+L+ LV+Q G
Sbjct: 1 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGT 60
Query: 363 QDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK 542
DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W++IAK
Sbjct: 61 DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAK 120
Query: 543 HLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNA 722
HLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AHK LGNRWAEIAK+LPGRTDNA
Sbjct: 121 HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNA 180
Query: 723 VKNHWNSTIKRKVDTGGFLSESRDCKPP 806
+KNHWNST++RKV+ G+L ES P
Sbjct: 181 IKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|XP_001928961.1| PREDICTED: transcriptional activator Myb isoform 1 [Sus scrofa].
Length = 640
Score = 280 bits (717), Expect = 6e-76
Identities = 131/208 (62%), Positives = 163/208 (78%), Gaps = 9/208 (4%)
Frame = +3
Query: 210 MSRRTR------GEELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQ 362
M+RR R E+ +++ D D D + K K +WT+EEDE+L+ LV+Q G
Sbjct: 1 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGT 60
Query: 363 QDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK 542
DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W++IAK
Sbjct: 61 DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAK 120
Query: 543 HLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNA 722
HLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AHK LGNRWAEIAK+LPGRTDNA
Sbjct: 121 HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNA 180
Query: 723 VKNHWNSTIKRKVDTGGFLSESRDCKPP 806
+KNHWNST++RKV+ G+L ES P
Sbjct: 181 IKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|XP_003355094.1| PREDICTED: hypothetical protein LOC100622377 [Sus scrofa].
Length = 459
Score = 113 bits (282), Expect = 2e-25
Identities = 50/93 (53%), Positives = 69/93 (74%), Gaps = 3/93 (3%)
Frame = +3
Query: 219 RTRGEELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQQDWKFLASH 389
R +E D+L Y D D +VP+Q+ K +VKWT++ED++L+ LV+Q G DW +ASH
Sbjct: 355 RLHEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTLIASH 414
Query: 390 FPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQK 488
NR+D QCQ+RW +VLNP+L+KGPWTKEEDQ+
Sbjct: 415 LQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQR 447
Score = 74.3 bits (181), Expect = 9e-14
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +3
Query: 465 WTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDR 641
WT++ED K+ +LV+++GT WTLIA HL+ R QC+ RW LNPE+ K WT+EED+
Sbjct: 388 WTRDEDDKLKKLVEQHGTDDWTLIASHLQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQ 446
>ref|XP_001929632.1| PREDICTED: cell division cycle 5-like protein [Sus scrofa].
Length = 802
Score = 70.1 bits (170), Expect = 2e-12
Identities = 38/109 (34%), Positives = 60/109 (55%)
Frame = +3
Query: 309 WTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQK 488
W EDE L+A V ++G+ W +AS ++ +QC+ RW L+P + K W++EE++K
Sbjct: 11 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEK 70
Query: 489 VIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEE 635
++ L K T QW IA + GR QC E + L+ ++ EEE
Sbjct: 71 LLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD--NEEE 115
Score = 69.7 bits (169), Expect = 2e-12
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = +3
Query: 459 GPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEED 638
G W ED+ + V KYG QW+ IA L + KQC+ RW+ L+P +KK+ W+ EE+
Sbjct: 9 GVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEE 68
Query: 639 RIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 737
+ K++ +W IA ++ GRT H+
Sbjct: 69 EKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHY 100
>ref|XP_003357531.1| PREDICTED: cyclin-D-binding Myb-like transcription factor 1 isoform
2 [Sus scrofa].
Length = 674
Score = 49.7 bits (117), Expect = 2e-06
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQ 485
K+T EE E+L+ L + G DW + + R+ + R R++ G WT+EE++
Sbjct: 138 KYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDR-CRLMKDTCNTGKWTEEEEK 194
Query: 486 KVIELVKKYGTKQ----------WTLIAKHLKGRLGKQCRERWHNHLN-PEVKKSCWTEE 632
++ E+V + + + W +A+ + R KQCR +W N+LN + + WT+E
Sbjct: 195 RLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKE 254
Query: 633 ED 638
++
Sbjct: 255 DE 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,688,575
Number of extensions: 659888
Number of successful extensions: 3399
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3180
Number of HSP's successfully gapped: 13
Length of query: 312
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 213
Effective length of database: 8,879,129
Effective search space: 1891254477
Effective search space used: 1891254477
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013341
(936 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032678.1| myb-related protein B [Mus musculus]. 442 e-124
Alignment gi|NP_032677.2| myb-related protein A [Mus musculus]. 292 2e-79
Alignment gi|NP_034978.3| transcriptional activator Myb [Mus musculus]. 279 2e-75
Alignment gi|NP_001185843.1| transcriptional activator Myb isoform 1 [Mus... 279 2e-75
Alignment gi|NP_758842.1| snRNA-activating protein complex subunit 4 [Mus... 96 4e-20
Alignment gi|NP_690023.1| cell division cycle 5-related protein [Mus musc... 70 2e-12
Alignment gi|NP_001103797.1| cyclin-D-binding Myb-like transcription fact... 50 3e-06
Alignment gi|NP_035936.3| cyclin-D-binding Myb-like transcription factor ... 50 3e-06
Alignment gi|NP_808373.1| Myb-like DNA-binding domain containing protein ... 49 4e-06
>ref|NP_032678.1| myb-related protein B [Mus musculus].
Length = 704
Score = 442 bits (1137), Expect = e-124
Identities = 212/243 (87%), Positives = 225/243 (92%), Gaps = 1/243 (0%)
Frame = +3
Query: 210 MSRRTRGEELDELHYQDTDSDVPEQRDSKCKVKWTQEEDEQLRALVKQFGQQDWKFLASH 389
MSRRTR E+LDELHYQD DSD+ EQRD++CKVKWT EEDEQLRALV+QFGQQDWKFLASH
Sbjct: 1 MSRRTRCEDLDELHYQDVDSDLLEQRDNRCKVKWTHEEDEQLRALVRQFGQQDWKFLASH 60
Query: 390 FPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQ 569
FPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQ
Sbjct: 61 FPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQ 120
Query: 570 CRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTI 749
CRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTI
Sbjct: 121 CRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTI 180
Query: 750 KRKVDTGGFLSESRDCKPPMYLLLELEDKDR-QSAPPSEGQGSLVTSWPPAFPALKGGES 926
KRKVDTGGF +ESRDCK P+YLLLELEDK++ Q P +GQGSLV+SW P P++ ES
Sbjct: 181 KRKVDTGGFPAESRDCK-PVYLLLELEDKEQHQGVQPVDGQGSLVSSW-PLVPSIVKEES 238
Query: 927 IEE 935
EE
Sbjct: 239 SEE 241
>ref|NP_032677.2| myb-related protein A [Mus musculus].
Length = 751
Score = 292 bits (748), Expect = 2e-79
Identities = 133/196 (67%), Positives = 166/196 (84%), Gaps = 4/196 (2%)
Frame = +3
Query: 210 MSRRTRGE-ELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQQDWKF 377
M++R+R E E D+L Y D D +VP+Q+ K +VKWT++ED++L+ LV+Q G DW
Sbjct: 1 MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTL 60
Query: 378 LASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGR 557
+ASH NR+D QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W+LIAKHLKGR
Sbjct: 61 IASHLQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGR 120
Query: 558 LGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 737
+GKQCRERWHNHLNPEVKKS WTEEEDRII EAHK LGNRWAEIAK+LPGRTDN++KNHW
Sbjct: 121 IGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHW 180
Query: 738 NSTIKRKVDTGGFLSE 785
NST++RKV+ G+L +
Sbjct: 181 NSTMRRKVEQEGYLQD 196
>ref|NP_034978.3| transcriptional activator Myb [Mus musculus].
Length = 636
Score = 279 bits (714), Expect = 2e-75
Identities = 138/245 (56%), Positives = 181/245 (73%), Gaps = 17/245 (6%)
Frame = +3
Query: 210 MSRRTR------GEELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQ 362
M+RR R E+ +++ D D D + K K +WT+EEDE+L+ LV+Q G
Sbjct: 1 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGT 60
Query: 363 QDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK 542
DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W++IAK
Sbjct: 61 DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAK 120
Query: 543 HLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNA 722
HLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AHK LGNRWAEIAK+LPGRTDNA
Sbjct: 121 HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNA 180
Query: 723 VKNHWNSTIKRKVDTGGFLSE-SRDCKPPMYLLLELEDK---DRQSAPPSE----GQGSL 878
+KNHWNST++RKV+ G+L E S+ + P+ + + ++PPS+ GQ S+
Sbjct: 181 IKNHWNSTMRRKVEQEGYLQEPSKASQTPVATSFQKNNHLMGFGHASPPSQLSPSGQSSV 240
Query: 879 VTSWP 893
+ +P
Sbjct: 241 NSEYP 245
>ref|NP_001185843.1| transcriptional activator Myb isoform 1 [Mus musculus].
Length = 755
Score = 279 bits (714), Expect = 2e-75
Identities = 138/245 (56%), Positives = 181/245 (73%), Gaps = 17/245 (6%)
Frame = +3
Query: 210 MSRRTR------GEELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQ 362
M+RR R E+ +++ D D D + K K +WT+EEDE+L+ LV+Q G
Sbjct: 1 MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGT 60
Query: 363 QDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK 542
DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W++IAK
Sbjct: 61 DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAK 120
Query: 543 HLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNA 722
HLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AHK LGNRWAEIAK+LPGRTDNA
Sbjct: 121 HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNA 180
Query: 723 VKNHWNSTIKRKVDTGGFLSE-SRDCKPPMYLLLELEDK---DRQSAPPSE----GQGSL 878
+KNHWNST++RKV+ G+L E S+ + P+ + + ++PPS+ GQ S+
Sbjct: 181 IKNHWNSTMRRKVEQEGYLQEPSKASQTPVATSFQKNNHLMGFGHASPPSQLSPSGQSSV 240
Query: 879 VTSWP 893
+ +P
Sbjct: 241 NSEYP 245
>ref|NP_758842.1| snRNA-activating protein complex subunit 4 [Mus musculus].
Length = 1325
Score = 95.9 bits (237), Expect = 4e-20
Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQF---GQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKE 476
+WT+EED L LV++ ++ + R Q YRW + L+P L +G W E
Sbjct: 348 EWTEEEDHMLTQLVQEMRVGNHIPYRKIVYFMEGRDSMQLIYRWTKSLDPSLKRGFWAPE 407
Query: 477 EDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCW-TEEEDRIICE 653
ED K+++ V KYG + W I + + GR QCR+R+ L+ +KK W +EE ++I
Sbjct: 408 EDAKLLQAVAKYGAQDWFKIREEVPGRSDAQCRDRYIRRLHFSLKKGRWNAKEEQQLIQL 467
Query: 654 AHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 758
K WA IA LP R+ + + W ++K
Sbjct: 468 IEKYGVGHWARIASELPHRSGSQCLSKWKILARKK 502
>ref|NP_690023.1| cell division cycle 5-related protein [Mus musculus].
Length = 802
Score = 70.1 bits (170), Expect = 2e-12
Identities = 38/109 (34%), Positives = 60/109 (55%)
Frame = +3
Query: 309 WTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQK 488
W EDE L+A V ++G+ W +AS ++ +QC+ RW L+P + K W++EE++K
Sbjct: 11 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEK 70
Query: 489 VIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEE 635
++ L K T QW IA + GR QC E + L+ ++ EEE
Sbjct: 71 LLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKTAQRD--NEEE 115
Score = 69.7 bits (169), Expect = 3e-12
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = +3
Query: 459 GPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEED 638
G W ED+ + V KYG QW+ IA L + KQC+ RW+ L+P +KK+ W+ EE+
Sbjct: 9 GVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEE 68
Query: 639 RIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 737
+ K++ +W IA ++ GRT H+
Sbjct: 69 EKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHY 100
>ref|NP_001103797.1| cyclin-D-binding Myb-like transcription factor 1 isoform 2 [Mus
musculus].
Length = 691
Score = 49.7 bits (117), Expect = 3e-06
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQ 485
K+T EE E+L+ L + G DW + + R+ + R R++ G WT+EE++
Sbjct: 226 KYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDR-CRLMKDTCNTGKWTEEEEK 282
Query: 486 KVIELVKKYGTKQ----------WTLIAKHLKGRLGKQCRERWHNHLN-PEVKKSCWTEE 632
++ E+V + + + W +A+ + R KQCR +W N+LN + + WT+E
Sbjct: 283 RLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKE 342
Query: 633 ED 638
++
Sbjct: 343 DE 344
>ref|NP_035936.3| cyclin-D-binding Myb-like transcription factor 1 isoform 1 [Mus
musculus].
Length = 761
Score = 49.7 bits (117), Expect = 3e-06
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQ 485
K+T EE E+L+ L + G DW + + R+ + R R++ G WT+EE++
Sbjct: 226 KYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDR-CRLMKDTCNTGKWTEEEEK 282
Query: 486 KVIELVKKYGTKQ----------WTLIAKHLKGRLGKQCRERWHNHLN-PEVKKSCWTEE 632
++ E+V + + + W +A+ + R KQCR +W N+LN + + WT+E
Sbjct: 283 RLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKE 342
Query: 633 ED 638
++
Sbjct: 343 DE 344
>ref|NP_808373.1| Myb-like DNA-binding domain containing protein [Mus musculus].
Length = 470
Score = 49.3 bits (116), Expect = 4e-06
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Frame = +3
Query: 306 KWTQEEDEQLRALVKQFGQQDWKFLASHF---PNRTDQQCQYRWLRVLNPDLVKGPWTKE 476
K++ EE E+L+ L ++ G DW + + P+ +C R++ G WT+E
Sbjct: 203 KYSPEEIEKLKELWQKHGN-DWITIGAAMGRSPSSVKDRC-----RLMKDTCNTGKWTEE 256
Query: 477 EDQKVIELVKKYGTKQ----------WTLIAKHLKGRLGKQCRERWHNHLN-PEVKKSCW 623
E+Q + ++V + + W +A+ + R KQCR +W N+LN + W
Sbjct: 257 EEQLLGDVVHELTCTEVDEKVTHGVCWATVAQRVGTRSAKQCRAKWLNYLNWKQTGGIEW 316
Query: 624 TEEEDRIICEAHKVLG------NRWAEIAKMLPG-RTDNAVKNHWNSTIKRKV 761
T +++ + + L RW E+AK R+ ++N W IKR++
Sbjct: 317 TRKDEVTLIQRLVELDVSDESEIRWDELAKGWESVRSPQWLRNKW-WIIKRQI 368
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,412,956
Number of extensions: 698335
Number of successful extensions: 3434
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3270
Number of HSP's successfully gapped: 12
Length of query: 312
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 211
Effective length of database: 12,583,923
Effective search space: 2655207753
Effective search space used: 2655207753
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013341
(936 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002457.1| myb-related protein B [Homo sapiens]. 471 e-133
Alignment gi|NP_001138227.1| myb-related protein A isoform 2 [Homo sapien... 292 3e-79
Alignment gi|NP_001073885.1| myb-related protein A isoform 1 [Homo sapien... 292 3e-79
Alignment gi|NP_001155132.1| transcriptional activator Myb isoform 8 [Hom... 280 1e-75
Alignment gi|NP_001155131.1| transcriptional activator Myb isoform 7 [Hom... 280 1e-75
Alignment gi|NP_001155130.1| transcriptional activator Myb isoform 6 [Hom... 280 1e-75
Alignment gi|NP_005366.2| transcriptional activator Myb isoform 2 [Homo s... 280 1e-75
Alignment gi|NP_001155129.1| transcriptional activator Myb isoform 5 [Hom... 280 1e-75
Alignment gi|NP_001155128.1| transcriptional activator Myb isoform 4 [Hom... 280 1e-75
Alignment gi|NP_001123645.1| transcriptional activator Myb isoform 1 [Hom... 280 1e-75
>ref|NP_002457.1| myb-related protein B [Homo sapiens].
Length = 700
Score = 471 bits (1212), Expect = e-133
Identities = 222/243 (91%), Positives = 231/243 (95%), Gaps = 1/243 (0%)
Frame = +3
Query: 210 MSRRTRGEELDELHYQDTDSDVPEQRDSKCKVKWTQEEDEQLRALVKQFGQQDWKFLASH 389
MSRRTR E+LDELHYQDTDSDVPEQRDSKCKVKWT EEDEQLRALV+QFGQQDWKFLASH
Sbjct: 1 MSRRTRCEDLDELHYQDTDSDVPEQRDSKCKVKWTHEEDEQLRALVRQFGQQDWKFLASH 60
Query: 390 FPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQ 569
FPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQ
Sbjct: 61 FPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQ 120
Query: 570 CRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTI 749
CRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTI
Sbjct: 121 CRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTI 180
Query: 750 KRKVDTGGFLSESRDCKPPMYLLLELEDKD-RQSAPPSEGQGSLVTSWPPAFPALKGGES 926
KRKVDTGGFLSES+DCKPP+YLLLELEDKD QSA P+EGQGSL+T+WP P +K E+
Sbjct: 181 KRKVDTGGFLSESKDCKPPVYLLLELEDKDGLQSAQPTEGQGSLLTNWPSVPPTIKEEEN 240
Query: 927 IEE 935
EE
Sbjct: 241 SEE 243
>ref|NP_001138227.1| myb-related protein A isoform 2 [Homo sapiens].
Length = 692
Score = 292 bits (748), Expect = 3e-79
Identities = 133/196 (67%), Positives = 166/196 (84%), Gaps = 4/196 (2%)
Frame = +3
Query: 210 MSRRTRGE-ELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQQDWKF 377
M++R+R E E D+L Y D D +VP+Q+ K +VKWT++ED++L+ LV+Q G DW
Sbjct: 1 MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTL 60
Query: 378 LASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGR 557
+ASH NR+D QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W+LIAKHLKGR
Sbjct: 61 IASHLQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGR 120
Query: 558 LGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 737
+GKQCRERWHNHLNPEVKKS WTEEEDRII EAHK LGNRWAEIAK+LPGRTDN++KNHW
Sbjct: 121 IGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHW 180
Query: 738 NSTIKRKVDTGGFLSE 785
NST++RKV+ G+L +
Sbjct: 181 NSTMRRKVEQEGYLQD 196
>ref|NP_001073885.1| myb-related protein A isoform 1 [Homo sapiens].
Length = 752
Score = 292 bits (748), Expect = 3e-79
Identities = 133/196 (67%), Positives = 166/196 (84%), Gaps = 4/196 (2%)
Frame = +3
Query: 210 MSRRTRGE-ELDELHYQDTDSDVPEQRDSKC---KVKWTQEEDEQLRALVKQFGQQDWKF 377
M++R+R E E D+L Y D D +VP+Q+ K +VKWT++ED++L+ LV+Q G DW
Sbjct: 1 MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTL 60
Query: 378 LASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGR 557
+ASH NR+D QCQ+RW +VLNP+L+KGPWTKEEDQ+VIELV+KYG K+W+LIAKHLKGR
Sbjct: 61 IASHLQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGR 120
Query: 558 LGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 737
+GKQCRERWHNHLNPEVKKS WTEEEDRII EAHK LGNRWAEIAK+LPGRTDN++KNHW
Sbjct: 121 IGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHW 180
Query: 738 NSTIKRKVDTGGFLSE 785
NST++RKV+ G+L +
Sbjct: 181 NSTMRRKVEQEGYLQD 196
>ref|NP_001155132.1| transcriptional activator Myb isoform 8 [Homo sapiens].
Length = 605
Score = 280 bits (716), Expect = 1e-75
Identities = 122/169 (72%), Positives = 148/169 (87%)
Frame = +3
Query: 300 KVKWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEE 479
K +WT+EEDE+L+ LV+Q G DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEE
Sbjct: 40 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEE 99
Query: 480 DQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAH 659
DQ+VIELV+KYG K+W++IAKHLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AH
Sbjct: 100 DQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 159
Query: 660 KVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESRDCKPP 806
K LGNRWAEIAK+LPGRTDNA+KNHWNST++RKV+ G+L ES P
Sbjct: 160 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|NP_001155131.1| transcriptional activator Myb isoform 7 [Homo sapiens].
Length = 603
Score = 280 bits (716), Expect = 1e-75
Identities = 122/169 (72%), Positives = 148/169 (87%)
Frame = +3
Query: 300 KVKWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEE 479
K +WT+EEDE+L+ LV+Q G DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEE
Sbjct: 40 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEE 99
Query: 480 DQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAH 659
DQ+VIELV+KYG K+W++IAKHLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AH
Sbjct: 100 DQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 159
Query: 660 KVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESRDCKPP 806
K LGNRWAEIAK+LPGRTDNA+KNHWNST++RKV+ G+L ES P
Sbjct: 160 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|NP_001155130.1| transcriptional activator Myb isoform 6 [Homo sapiens].
Length = 745
Score = 280 bits (716), Expect = 1e-75
Identities = 122/169 (72%), Positives = 148/169 (87%)
Frame = +3
Query: 300 KVKWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEE 479
K +WT+EEDE+L+ LV+Q G DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEE
Sbjct: 40 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEE 99
Query: 480 DQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAH 659
DQ+VIELV+KYG K+W++IAKHLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AH
Sbjct: 100 DQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 159
Query: 660 KVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESRDCKPP 806
K LGNRWAEIAK+LPGRTDNA+KNHWNST++RKV+ G+L ES P
Sbjct: 160 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|NP_005366.2| transcriptional activator Myb isoform 2 [Homo sapiens].
Length = 640
Score = 280 bits (716), Expect = 1e-75
Identities = 122/169 (72%), Positives = 148/169 (87%)
Frame = +3
Query: 300 KVKWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEE 479
K +WT+EEDE+L+ LV+Q G DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEE
Sbjct: 40 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEE 99
Query: 480 DQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAH 659
DQ+VIELV+KYG K+W++IAKHLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AH
Sbjct: 100 DQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 159
Query: 660 KVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESRDCKPP 806
K LGNRWAEIAK+LPGRTDNA+KNHWNST++RKV+ G+L ES P
Sbjct: 160 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|NP_001155129.1| transcriptional activator Myb isoform 5 [Homo sapiens].
Length = 555
Score = 280 bits (716), Expect = 1e-75
Identities = 122/169 (72%), Positives = 148/169 (87%)
Frame = +3
Query: 300 KVKWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEE 479
K +WT+EEDE+L+ LV+Q G DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEE
Sbjct: 40 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEE 99
Query: 480 DQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAH 659
DQ+VIELV+KYG K+W++IAKHLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AH
Sbjct: 100 DQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 159
Query: 660 KVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESRDCKPP 806
K LGNRWAEIAK+LPGRTDNA+KNHWNST++RKV+ G+L ES P
Sbjct: 160 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|NP_001155128.1| transcriptional activator Myb isoform 4 [Homo sapiens].
Length = 758
Score = 280 bits (716), Expect = 1e-75
Identities = 122/169 (72%), Positives = 148/169 (87%)
Frame = +3
Query: 300 KVKWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEE 479
K +WT+EEDE+L+ LV+Q G DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEE
Sbjct: 40 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEE 99
Query: 480 DQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAH 659
DQ+VIELV+KYG K+W++IAKHLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AH
Sbjct: 100 DQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 159
Query: 660 KVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESRDCKPP 806
K LGNRWAEIAK+LPGRTDNA+KNHWNST++RKV+ G+L ES P
Sbjct: 160 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQP 208
>ref|NP_001123645.1| transcriptional activator Myb isoform 1 [Homo sapiens].
Length = 761
Score = 280 bits (716), Expect = 1e-75
Identities = 122/169 (72%), Positives = 148/169 (87%)
Frame = +3
Query: 300 KVKWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEE 479
K +WT+EEDE+L+ LV+Q G DWK +A++ PNRTD QCQ+RW +VLNP+L+KGPWTKEE
Sbjct: 40 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEE 99
Query: 480 DQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAH 659
DQ+VIELV+KYG K+W++IAKHLKGR+GKQCRERWHNHLNPEVKK+ WTEEEDRII +AH
Sbjct: 100 DQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 159
Query: 660 KVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESRDCKPP 806
K LGNRWAEIAK+LPGRTDNA+KNHWNST++RKV+ G+L ES P
Sbjct: 160 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQP 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,505,104
Number of extensions: 852979
Number of successful extensions: 4584
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4326
Number of HSP's successfully gapped: 28
Length of query: 312
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,934,836
Effective search space: 3136315560
Effective search space used: 3136315560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013341
(936 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 537 e-150
Sscrofa_Chr17 446 e-122
>Sscrofa_Chr04
|| Length = 143465943
Score = 537 bits (271), Expect = e-150
Identities = 343/367 (93%)
Strand = Plus / Minus
Query: 231 gaggagctggatgagctgcactaccaggacacagattcagacgtgccagagcagcgagac 290
|||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 91384693 gaggagatggatgagctgcactaccaggacacagattcagatgtgccagagcagtgagac 91384634
Query: 291 agcaaatgcaaggtcaaatggactcaggaggaggacgagcagctgagggccctggtgaag 350
||||||||||||| ||| ||||||||| ||||||| |||||||| ||||||||||| |||
Sbjct: 91384633 agcaaatgcaaggccaagtggactcagaaggaggatgagcagctaagggccctggtaaag 91384574
Query: 351 caatttgggcagcaagactggaagttcctggccagccactttcccaaccgcactgaccag 410
|| ||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct: 91384573 cagtttgggcagcaagactggaagttcctggccagcaactttcccacctgcactgaccag 91384514
Query: 411 cagtgccagtaccggtggctgagggtcttgaatccagacctcgtcaaggggccatggacc 470
|| |||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 91384513 cactgccagtaccagtggctgagggtcttgaatccagaccttgtcaagggggcatggacc 91384454
Query: 471 aaagaggaggaccagaaggtcatcgagctggtcaagaagtacggcacgaagcagtggaca 530
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 91384453 aaagaggaggaccagaaggtcatcaagctggtcaagaagtacagcacgaagcagtggacg 91384394
Query: 531 ctgatcgccaagcacctaaagggccggctggggaagcagtgccgcgagcgctggcacaac 590
||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 91384393 ctgatggccaagcacctgaagggctggctggggaagcagtgccgtgagcgctggcacaac 91384334
Query: 591 cacctca 597
|||||||
Sbjct: 91384333 cacctca 91384327
Score = 391 bits (197), Expect = e-106
Identities = 271/293 (92%), Gaps = 2/293 (0%)
Strand = Plus / Minus
Query: 643 tcatctgcgaggcccacaaggtgctgggcaaccgctgggctgagattgccaagatgcttc 702
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 91384329 tcatctgcgaggcccacaaggtgctgggcaaccgctgggctgagatcgccaagatgctgc 91384270
Query: 703 cagggaggacagacaatgctgtgaagaatcactggaactccaccatcaagaggaaagtgg 762
||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || |
Sbjct: 91384269 cagggaggacagagaatgctgtgaagaatccctggaactccaccatcaagaggaaggtag 91384210
Query: 763 acacgggaggcttcctgagtgagtccagagactgcaaaccccccatgtacttgctgctgg 822
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 91384209 acacgggaggcttcctgagccagtccagagactgcaaaccccccatgtacttgctactgg 91384150
Query: 823 agctggaggacaaggaccgccagagtgcgcccccctcggaaggccaggggagtcttgtga 882
|||||||| ||||||||| ||||||||| ||| ||| |||||||||||||| ||| |||
Sbjct: 91384149 agctggagaacaaggaccaccagagtgcaccctccttggaaggccaggggaatctcatga 91384090
Query: 883 ccagctggcccccagcgttccctgccctgaaaggagga-gagagcattgagga 934
| ||||||||||||| |||||||||||| ||||||||| ||||||| ||||||
Sbjct: 91384089 caagctggcccccagagttccctgccct-aaaggaggaggagagcagtgagga 91384038
Score = 58.0 bits (29), Expect = 9e-06
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 46 gcagccacttcgagccgcagcgggacctccggccacgctgacgcatcgc 94
|||||||||| |||| ||||| |||||||||||| |||||||||||||
Sbjct: 91384864 gcagccactttgagcagcagccggacctccggccctgctgacgcatcgc 91384816
>Sscrofa_Chr17
|| Length = 69701581
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Plus
Query: 486 aaggtcatcgagctggtcaagaagtacggcacgaagcagtggacactgatcgccaagcac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51705009 aaggtcatcgagctggtcaagaagtacggcacgaagcagtggacactgatcgccaagcac 51705068
Query: 546 ctaaagggccggctggggaagcagtgccgcgagcgctggcacaaccacctcaaccccgag 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51705069 ctaaagggccggctggggaagcagtgccgcgagcgctggcacaaccacctcaaccccgag 51705128
Query: 606 gtgaaaaagtcctgctggacggaggaggaggaccgcatcatctgcgaggcccacaaggtg 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51705129 gtgaaaaagtcctgctggacggaggaggaggaccgcatcatctgcgaggcccacaaggtg 51705188
Query: 666 ctgggcaaccgctgggctgagattgccaagatgcttccagggagg 710
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51705189 ctgggcaaccgctgggctgagattgccaagatgcttccagggagg 51705233
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 708 aggacagacaatgctgtgaagaatcactggaactccaccatcaagaggaaagtggacacg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51707359 aggacagacaatgctgtgaagaatcactggaactccaccatcaagaggaaagtggacacg 51707418
Query: 768 ggaggcttcctgagtgagtccagagactgcaaaccccccatgtacttgctgctggagctg 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51707419 ggaggcttcctgagtgagtccagagactgcaaaccccccatgtacttgctgctggagctg 51707478
Query: 828 gaggacaaggaccgccagagtgcgcccccctcggaaggccagg 870
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51707479 gaggacaaggaccgccagagtgcgcccccctcggaaggccagg 51707521
Score = 232 bits (117), Expect = 3e-58
Identities = 123/125 (98%)
Strand = Plus / Plus
Query: 44 tcgcagccacttcgagccgcagcgggacctccggccacgctgacgcatcgcatcgcggcc 103
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 51696609 tcgcagccacttcgagccgcagcgggacctccggccacgctgacgcatcgcatcacggcc 51696668
Query: 104 tcggggccgggagcggccggagcagctcgtacattgaccccggcccggctcccgctccgg 163
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51696669 tcggggccaggagcggccggagcagctcgtacattgaccccggcccggctcccgctccgg 51696728
Query: 164 gctca 168
|||||
Sbjct: 51696729 gctca 51696733
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 396 aaccgcactgaccagcagtgccagtaccggtggctgagggtcttgaatccagacctcgtc 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51704729 aaccgcactgaccagcagtgccagtaccggtggctgagggtcttgaatccagacctcgtc 51704788
Query: 456 aaggggccatggaccaaagaggaggaccagaaggt 490
|||||||||||||||||||||||||||||||||||
Sbjct: 51704789 aaggggccatggaccaaagaggaggaccagaaggt 51704823
Score = 159 bits (80), Expect = 3e-36
Identities = 92/96 (95%)
Strand = Plus / Plus
Query: 229 gggaggagctggatgagctgcactaccaggacacagattcagacgtgccagagcagcgag 288
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 51700374 gggaggagctggatgagctgcactaccaggacacagattcatacgtgccatagcagcgag 51700433
Query: 289 acagcaaatgcaaggtcaaatggactcaggaggagg 324
|| ||||||||||||||||||||||||||||||||
Sbjct: 51700434 acgacaaatgcaaggtcaaatggactcaggaggagg 51700469
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 322 aggacgagcagctgagggccctggtgaagcaatttgggcagcaagactggaagttcctgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51703842 aggacgagcagctgagggccctggtgaagcaatttgggcagcaagactggaagttcctgg 51703901
Query: 382 ccagccactttccc 395
||||||||||||||
Sbjct: 51703902 ccagccactttccc 51703915
Score = 99.6 bits (50), Expect = 3e-18
Identities = 67/70 (95%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 866 ccaggggagtcttgtgaccagctggcccccagcgttccctgccctgaaaggagga-gaga 924
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 51712847 ccaggggagtcttgtgaccagctggcccccagcgttccctgccctg-aaggaggaggaga 51712905
Query: 925 gcattgagga 934
||| ||||||
Sbjct: 51712906 gcagtgagga 51712915
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,622,459
Number of extensions: 178
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 10
Length of query: 936
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 915
Effective length of database: 2,808,413,156
Effective search space: 2569698037740
Effective search space used: 2569698037740
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)