Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013344
(1117 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106703.1| dermatan-sulfate epimerase [Bos taurus]. 464 e-142
Alignment gi|NP_001193390.1| dermatan-sulfate epimerase-like protein [Bos... 180 7e-50
Alignment gi|XP_001256728.2| PREDICTED: dermatan sulfate epimerase [Bos t... 180 7e-50
>ref|NP_001106703.1| dermatan-sulfate epimerase [Bos taurus].
Length = 959
Score = 464 bits (1193), Expect(2) = e-142
Identities = 221/236 (93%), Positives = 227/236 (96%)
Frame = +3
Query: 261 MRTHTRGAPSVFFIYLFCLASAYVTDENPKVMIPFTNANYDSHPMLFFSRAEVAELQLRA 440
MRTHTRGAPSVFFI LFC SA VTDENP+VMIPFTNANYDSHPML+FSRAEVAELQLRA
Sbjct: 1 MRTHTRGAPSVFFICLFCFVSACVTDENPEVMIPFTNANYDSHPMLYFSRAEVAELQLRA 60
Query: 441 ASSHEHIAERLTEAVRTMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPDNI 620
ASSHEHIA RLTEAV TMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYP+N+
Sbjct: 61 ASSHEHIAARLTEAVNTMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPENM 120
Query: 621 EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQERFLEV 800
EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQE+FLEV
Sbjct: 121 EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQEKFLEV 180
Query: 801 IANASGYMYETSYRRGWGFSYLHNHQPTNCMALLTGSLVLMNQGYLPEAYLWTNKV 968
IANASGYMYETSYRRGWGF YLHNHQPTNCMALLTGSLVLMNQGYL EAYLWT +V
Sbjct: 181 IANASGYMYETSYRRGWGFQYLHNHQPTNCMALLTGSLVLMNQGYLQEAYLWTKQV 236
Score = 60.1 bits (144), Expect(2) = e-142
Identities = 32/47 (68%), Positives = 35/47 (74%)
Frame = +2
Query: 950 LMDKQGLTIMKKSLVLAPEVTDGSLYEGVAYGTYPLDHSFRICFLVQ 1090
L KQ LTIM+KSLVL EVTDGSLYEGVAYG+Y F+ FLVQ
Sbjct: 231 LWTKQVLTIMEKSLVLLREVTDGSLYEGVAYGSYTTRSLFQYMFLVQ 277
>ref|NP_001193390.1| dermatan-sulfate epimerase-like protein [Bos taurus].
Length = 1212
Score = 180 bits (456), Expect(2) = 7e-50
Identities = 85/177 (48%), Positives = 120/177 (67%)
Frame = +3
Query: 387 HPMLFFSRAEVAELQLRAASSHEHIAERLTEAVRTMLSSPLEYLPPWDPKEYSARWNEIY 566
HP L+F E+ ++ ++ ++H H+ + AV MLS+P YLPP +++A+WNEIY
Sbjct: 62 HPRLYFDAGEIQAMRQKSRTTHLHLFRAIRSAVTAMLSNPTYYLPPPKHADFAAKWNEIY 121
Query: 567 GNNLGALAMFCVLYPDNIEARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAY 746
GNNL LA++C+L P++ A + A +YM+RM WLV++AP DEVP+ HSL GFATA+
Sbjct: 122 GNNLPPLALYCLLCPEDKVAFEFALEYMDRMVGYKDWLVENAPGDEVPVGHSLTGFATAF 181
Query: 747 DFLYNYLSKTQQERFLEVIANASGYMYETSYRRGWGFSYLHNHQPTNCMALLTGSLV 917
DFLYN L +++++LE I + MYE S R WG LHNHQ TN +ALLTG+LV
Sbjct: 182 DFLYNLLDGRRRQKYLEKIWVITEEMYEYSKVRSWGKQLLHNHQATNMIALLTGALV 238
Score = 36.6 bits (83), Expect(2) = 7e-50
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 974 IMKKSLVLAPEVTDGSLYEGVAYGTYPLDHSFRICFLVQ 1090
+M+K++ L + DGSL EGVAYG+Y + FL Q
Sbjct: 257 VMEKTMFLLNHIVDGSLDEGVAYGSYTAKSVTQYVFLAQ 295
>ref|XP_001256728.2| PREDICTED: dermatan sulfate epimerase [Bos taurus].
Length = 1212
Score = 180 bits (456), Expect(2) = 7e-50
Identities = 85/177 (48%), Positives = 120/177 (67%)
Frame = +3
Query: 387 HPMLFFSRAEVAELQLRAASSHEHIAERLTEAVRTMLSSPLEYLPPWDPKEYSARWNEIY 566
HP L+F E+ ++ ++ ++H H+ + AV MLS+P YLPP +++A+WNEIY
Sbjct: 62 HPRLYFDAGEIQAMRQKSRTTHLHLFRAIRSAVTAMLSNPTYYLPPPKHADFAAKWNEIY 121
Query: 567 GNNLGALAMFCVLYPDNIEARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAY 746
GNNL LA++C+L P++ A + A +YM+RM WLV++AP DEVP+ HSL GFATA+
Sbjct: 122 GNNLPPLALYCLLCPEDKVAFEFALEYMDRMVGYKDWLVENAPGDEVPVGHSLTGFATAF 181
Query: 747 DFLYNYLSKTQQERFLEVIANASGYMYETSYRRGWGFSYLHNHQPTNCMALLTGSLV 917
DFLYN L +++++LE I + MYE S R WG LHNHQ TN +ALLTG+LV
Sbjct: 182 DFLYNLLDGRRRQKYLEKIWVITEEMYEYSKVRSWGKQLLHNHQATNMIALLTGALV 238
Score = 36.6 bits (83), Expect(2) = 7e-50
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 974 IMKKSLVLAPEVTDGSLYEGVAYGTYPLDHSFRICFLVQ 1090
+M+K++ L + DGSL EGVAYG+Y + FL Q
Sbjct: 257 VMEKTMFLLNHIVDGSLDEGVAYGSYTAKSVTQYVFLAQ 295
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,258,570
Number of extensions: 1220261
Number of successful extensions: 5376
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5335
Number of HSP's successfully gapped: 6
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013344
(1117 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533477.2| PREDICTED: similar to squamous cell carcinoma a... 469 e-143
Alignment gi|XP_541064.2| PREDICTED: similar to squamous cell carcinoma a... 180 8e-50
>ref|XP_533477.2| PREDICTED: similar to squamous cell carcinoma antigen recognized by
T cells 2 [Canis familiaris].
Length = 959
Score = 469 bits (1206), Expect(2) = e-143
Identities = 221/236 (93%), Positives = 228/236 (96%)
Frame = +3
Query: 261 MRTHTRGAPSVFFIYLFCLASAYVTDENPKVMIPFTNANYDSHPMLFFSRAEVAELQLRA 440
MRTHTRGAPSVFFIYLFC SAY+TDENP+VMIPFTNANYDSHPML+FSRAEVAELQLRA
Sbjct: 1 MRTHTRGAPSVFFIYLFCFVSAYITDENPEVMIPFTNANYDSHPMLYFSRAEVAELQLRA 60
Query: 441 ASSHEHIAERLTEAVRTMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPDNI 620
ASSHEHIA RLTEAV TMLSSPLEYLPPWDPK+YSARWNEIYGNNLGALAMFCVLYP+NI
Sbjct: 61 ASSHEHIAARLTEAVHTMLSSPLEYLPPWDPKDYSARWNEIYGNNLGALAMFCVLYPENI 120
Query: 621 EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQERFLEV 800
EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQE+FLEV
Sbjct: 121 EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQEKFLEV 180
Query: 801 IANASGYMYETSYRRGWGFSYLHNHQPTNCMALLTGSLVLMNQGYLPEAYLWTNKV 968
IAN SGYMYETSYRRGWGF YLHNHQPTNCMALLTGSLVLMNQGYL EAYLWT +V
Sbjct: 181 IANVSGYMYETSYRRGWGFQYLHNHQPTNCMALLTGSLVLMNQGYLQEAYLWTKQV 236
Score = 60.1 bits (144), Expect(2) = e-143
Identities = 32/47 (68%), Positives = 35/47 (74%)
Frame = +2
Query: 950 LMDKQGLTIMKKSLVLAPEVTDGSLYEGVAYGTYPLDHSFRICFLVQ 1090
L KQ LTIM+KSLVL EVTDGSLYEGVAYG+Y F+ FLVQ
Sbjct: 231 LWTKQVLTIMEKSLVLLREVTDGSLYEGVAYGSYTTRSLFQYMFLVQ 277
>ref|XP_541064.2| PREDICTED: similar to squamous cell carcinoma antigen recognized by
T cells 2 [Canis familiaris].
Length = 1212
Score = 180 bits (456), Expect(2) = 8e-50
Identities = 85/177 (48%), Positives = 119/177 (67%)
Frame = +3
Query: 387 HPMLFFSRAEVAELQLRAASSHEHIAERLTEAVRTMLSSPLEYLPPWDPKEYSARWNEIY 566
HP L+F E+ ++ ++ +SH H+ + AV MLS+P YLPP +++A+WNEIY
Sbjct: 62 HPSLYFDAGEIQAMRQKSRTSHLHLFRAIRSAVTVMLSNPTYYLPPPKHADFAAKWNEIY 121
Query: 567 GNNLGALAMFCVLYPDNIEARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAY 746
GNNL LA++C+L P++ A + +YM+RM WLV++AP DEVP+ HSL GFATA+
Sbjct: 122 GNNLPPLALYCLLSPEDKVAFEFILEYMDRMVGYKDWLVENAPGDEVPVGHSLTGFATAF 181
Query: 747 DFLYNYLSKTQQERFLEVIANASGYMYETSYRRGWGFSYLHNHQPTNCMALLTGSLV 917
DFLYN L +++++LE I + MYE S R WG LHNHQ TN +ALLTG+LV
Sbjct: 182 DFLYNLLDDHRRQKYLEKIWAVTEEMYEYSKVRSWGKQLLHNHQATNMVALLTGALV 238
Score = 36.6 bits (83), Expect(2) = 8e-50
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 974 IMKKSLVLAPEVTDGSLYEGVAYGTYPLDHSFRICFLVQ 1090
+M+K++ L + DGSL EGVAYG+Y + FL Q
Sbjct: 257 VMEKTMFLLNHIVDGSLDEGVAYGSYTAKSVTQYVFLAQ 295
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,177,748
Number of extensions: 1252667
Number of successful extensions: 5465
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5426
Number of HSP's successfully gapped: 4
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013344
(1117 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353343.1| PREDICTED: dermatan-sulfate epimerase-like [... 481 e-147
Alignment gi|XP_003353340.1| PREDICTED: dermatan-sulfate epimerase-like [... 288 5e-78
>ref|XP_003353343.1| PREDICTED: dermatan-sulfate epimerase-like [Sus scrofa].
Length = 343
Score = 481 bits (1237), Expect(2) = e-147
Identities = 230/236 (97%), Positives = 231/236 (97%)
Frame = +3
Query: 261 MRTHTRGAPSVFFIYLFCLASAYVTDENPKVMIPFTNANYDSHPMLFFSRAEVAELQLRA 440
MRTHTRGAPSVFFIYLFCLASAYVTDENPKVMIPFTNANYDSHPMLFFSRAEVAELQLRA
Sbjct: 1 MRTHTRGAPSVFFIYLFCLASAYVTDENPKVMIPFTNANYDSHPMLFFSRAEVAELQLRA 60
Query: 441 ASSHEHIAERLTEAVRTMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPDNI 620
ASSHEHIAERL EAVRTMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPDNI
Sbjct: 61 ASSHEHIAERLIEAVRTMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPDNI 120
Query: 621 EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQERFLEV 800
EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGF TAYDFLYNYLSKTQQERFLEV
Sbjct: 121 EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFTTAYDFLYNYLSKTQQERFLEV 180
Query: 801 IANASGYMYETSYRRGWGFSYLHNHQPTNCMALLTGSLVLMNQGYLPEAYLWTNKV 968
IANASGYMYETSYRRGWGF YLHNHQPTNCMALLTGSLVLMNQGYL EAYLWT +V
Sbjct: 181 IANASGYMYETSYRRGWGFQYLHNHQPTNCMALLTGSLVLMNQGYLQEAYLWTKQV 236
Score = 60.1 bits (144), Expect(2) = e-147
Identities = 32/47 (68%), Positives = 35/47 (74%)
Frame = +2
Query: 950 LMDKQGLTIMKKSLVLAPEVTDGSLYEGVAYGTYPLDHSFRICFLVQ 1090
L KQ LTIM+KSLVL EVTDGSLYEGVAYG+Y F+ FLVQ
Sbjct: 231 LWTKQVLTIMEKSLVLLREVTDGSLYEGVAYGSYTTRSLFQYMFLVQ 277
>ref|XP_003353340.1| PREDICTED: dermatan-sulfate epimerase-like [Sus scrofa].
Length = 139
Score = 288 bits (736), Expect = 5e-78
Identities = 138/139 (99%), Positives = 138/139 (99%)
Frame = +3
Query: 261 MRTHTRGAPSVFFIYLFCLASAYVTDENPKVMIPFTNANYDSHPMLFFSRAEVAELQLRA 440
MRTHTRGAPSVFFIYLFCLASAYVTDENPKVMIPFTNANYDSHPMLFFSRAEVAELQLRA
Sbjct: 1 MRTHTRGAPSVFFIYLFCLASAYVTDENPKVMIPFTNANYDSHPMLFFSRAEVAELQLRA 60
Query: 441 ASSHEHIAERLTEAVRTMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPDNI 620
ASSHEHIAERL EAVRTMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPDNI
Sbjct: 61 ASSHEHIAERLIEAVRTMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPDNI 120
Query: 621 EARDMAKDYMERMAAQPSW 677
EARDMAKDYMERMAAQPSW
Sbjct: 121 EARDMAKDYMERMAAQPSW 139
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,935,496
Number of extensions: 786516
Number of successful extensions: 3405
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3395
Number of HSP's successfully gapped: 3
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013344
(1117 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766096.1| dermatan-sulfate epimerase precursor [Mus muscu... 455 e-139
Alignment gi|NP_001074785.1| dermatan-sulfate epimerase-like protein prec... 179 8e-50
>ref|NP_766096.1| dermatan-sulfate epimerase precursor [Mus musculus].
Length = 958
Score = 455 bits (1170), Expect(2) = e-139
Identities = 214/236 (90%), Positives = 224/236 (94%)
Frame = +3
Query: 261 MRTHTRGAPSVFFIYLFCLASAYVTDENPKVMIPFTNANYDSHPMLFFSRAEVAELQLRA 440
MRTHTRGAPSVFFI L C SA++TDENP+VMIPFTNANYDSHPML+FSR +VAELQLRA
Sbjct: 1 MRTHTRGAPSVFFICLLCCVSAFITDENPEVMIPFTNANYDSHPMLYFSRKDVAELQLRA 60
Query: 441 ASSHEHIAERLTEAVRTMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPDNI 620
ASSHEHIA RLTEAV TML++PLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYP+N
Sbjct: 61 ASSHEHIAARLTEAVHTMLTNPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPENT 120
Query: 621 EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQERFLEV 800
EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQE FLEV
Sbjct: 121 EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQETFLEV 180
Query: 801 IANASGYMYETSYRRGWGFSYLHNHQPTNCMALLTGSLVLMNQGYLPEAYLWTNKV 968
IANASGYMYETSYRRGWGF YLHNHQPTNCMALLTGSL+LMNQGYL EAYLWT +V
Sbjct: 181 IANASGYMYETSYRRGWGFQYLHNHQPTNCMALLTGSLILMNQGYLQEAYLWTKQV 236
Score = 58.5 bits (140), Expect(2) = e-139
Identities = 31/47 (65%), Positives = 35/47 (74%)
Frame = +2
Query: 950 LMDKQGLTIMKKSLVLAPEVTDGSLYEGVAYGTYPLDHSFRICFLVQ 1090
L KQ L+IM+KSLVL EVTDGSLYEGVAYG+Y F+ FLVQ
Sbjct: 231 LWTKQVLSIMEKSLVLLREVTDGSLYEGVAYGSYTTRSLFQYMFLVQ 277
>ref|NP_001074785.1| dermatan-sulfate epimerase-like protein precursor [Mus musculus].
Length = 1207
Score = 179 bits (455), Expect(2) = 8e-50
Identities = 86/177 (48%), Positives = 119/177 (67%)
Frame = +3
Query: 387 HPMLFFSRAEVAELQLRAASSHEHIAERLTEAVRTMLSSPLEYLPPWDPKEYSARWNEIY 566
HP L+F ++ L+ ++ +SH HI + AV MLS+P YLPP E++A+WNEIY
Sbjct: 57 HPNLYFDAGDIQTLKQKSRTSHLHIFRAIKSAVTIMLSNPSYYLPPPKHAEFAAKWNEIY 116
Query: 567 GNNLGALAMFCVLYPDNIEARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAY 746
GNNL LA++C+L P++ A + +YM+RM + WLV++AP DEVP+ HSL GFATA+
Sbjct: 117 GNNLPPLALYCLLCPEDKVAFEFVMEYMDRMVSYKDWLVENAPGDEVPVGHSLTGFATAF 176
Query: 747 DFLYNYLSKTQQERFLEVIANASGYMYETSYRRGWGFSYLHNHQPTNCMALLTGSLV 917
DFLYN L +++++LE I + MYE S R WG LHNHQ TN +ALL G+LV
Sbjct: 177 DFLYNLLGNQRKQKYLEKIWIVTEEMYEYSKIRSWGKQLLHNHQATNMIALLIGALV 233
Score = 36.6 bits (83), Expect(2) = 8e-50
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 974 IMKKSLVLAPEVTDGSLYEGVAYGTYPLDHSFRICFLVQ 1090
+M+K++ L + DGSL EGVAYG+Y + FL Q
Sbjct: 252 VMEKTMFLLKHIVDGSLDEGVAYGSYTSKSVTQYVFLAQ 290
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,315,597
Number of extensions: 1025949
Number of successful extensions: 4381
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4344
Number of HSP's successfully gapped: 4
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013344
(1117 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074445.1| dermatan-sulfate epimerase precursor [Homo s... 466 e-143
Alignment gi|NP_037484.1| dermatan-sulfate epimerase precursor [Homo sapi... 466 e-143
Alignment gi|NP_115536.1| dermatan-sulfate epimerase-like protein [Homo s... 180 6e-50
>ref|NP_001074445.1| dermatan-sulfate epimerase precursor [Homo sapiens].
Length = 958
Score = 466 bits (1200), Expect(2) = e-143
Identities = 220/236 (93%), Positives = 228/236 (96%)
Frame = +3
Query: 261 MRTHTRGAPSVFFIYLFCLASAYVTDENPKVMIPFTNANYDSHPMLFFSRAEVAELQLRA 440
MRTHTRGAPSVFFIYL C SAY+TDENP+VMIPFTNANYDSHPML+FSRAEVAELQLRA
Sbjct: 1 MRTHTRGAPSVFFIYLLCFVSAYITDENPEVMIPFTNANYDSHPMLYFSRAEVAELQLRA 60
Query: 441 ASSHEHIAERLTEAVRTMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPDNI 620
ASSHEHIA RLTEAV TMLSSPLEYLPPWDPK+YSARWNEI+GNNLGALAMFCVLYP+NI
Sbjct: 61 ASSHEHIAARLTEAVHTMLSSPLEYLPPWDPKDYSARWNEIFGNNLGALAMFCVLYPENI 120
Query: 621 EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQERFLEV 800
EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQE+FLEV
Sbjct: 121 EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQEKFLEV 180
Query: 801 IANASGYMYETSYRRGWGFSYLHNHQPTNCMALLTGSLVLMNQGYLPEAYLWTNKV 968
IANASGYMYETSYRRGWGF YLHNHQPTNCMALLTGSLVLMNQGYL EAYLWT +V
Sbjct: 181 IANASGYMYETSYRRGWGFQYLHNHQPTNCMALLTGSLVLMNQGYLQEAYLWTKQV 236
Score = 60.1 bits (144), Expect(2) = e-143
Identities = 32/47 (68%), Positives = 35/47 (74%)
Frame = +2
Query: 950 LMDKQGLTIMKKSLVLAPEVTDGSLYEGVAYGTYPLDHSFRICFLVQ 1090
L KQ LTIM+KSLVL EVTDGSLYEGVAYG+Y F+ FLVQ
Sbjct: 231 LWTKQVLTIMEKSLVLLREVTDGSLYEGVAYGSYTTRSLFQYMFLVQ 277
>ref|NP_037484.1| dermatan-sulfate epimerase precursor [Homo sapiens].
Length = 958
Score = 466 bits (1200), Expect(2) = e-143
Identities = 220/236 (93%), Positives = 228/236 (96%)
Frame = +3
Query: 261 MRTHTRGAPSVFFIYLFCLASAYVTDENPKVMIPFTNANYDSHPMLFFSRAEVAELQLRA 440
MRTHTRGAPSVFFIYL C SAY+TDENP+VMIPFTNANYDSHPML+FSRAEVAELQLRA
Sbjct: 1 MRTHTRGAPSVFFIYLLCFVSAYITDENPEVMIPFTNANYDSHPMLYFSRAEVAELQLRA 60
Query: 441 ASSHEHIAERLTEAVRTMLSSPLEYLPPWDPKEYSARWNEIYGNNLGALAMFCVLYPDNI 620
ASSHEHIA RLTEAV TMLSSPLEYLPPWDPK+YSARWNEI+GNNLGALAMFCVLYP+NI
Sbjct: 61 ASSHEHIAARLTEAVHTMLSSPLEYLPPWDPKDYSARWNEIFGNNLGALAMFCVLYPENI 120
Query: 621 EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQERFLEV 800
EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQE+FLEV
Sbjct: 121 EARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQEKFLEV 180
Query: 801 IANASGYMYETSYRRGWGFSYLHNHQPTNCMALLTGSLVLMNQGYLPEAYLWTNKV 968
IANASGYMYETSYRRGWGF YLHNHQPTNCMALLTGSLVLMNQGYL EAYLWT +V
Sbjct: 181 IANASGYMYETSYRRGWGFQYLHNHQPTNCMALLTGSLVLMNQGYLQEAYLWTKQV 236
Score = 60.1 bits (144), Expect(2) = e-143
Identities = 32/47 (68%), Positives = 35/47 (74%)
Frame = +2
Query: 950 LMDKQGLTIMKKSLVLAPEVTDGSLYEGVAYGTYPLDHSFRICFLVQ 1090
L KQ LTIM+KSLVL EVTDGSLYEGVAYG+Y F+ FLVQ
Sbjct: 231 LWTKQVLTIMEKSLVLLREVTDGSLYEGVAYGSYTTRSLFQYMFLVQ 277
>ref|NP_115536.1| dermatan-sulfate epimerase-like protein [Homo sapiens].
Length = 1222
Score = 180 bits (457), Expect(2) = 6e-50
Identities = 85/177 (48%), Positives = 119/177 (67%)
Frame = +3
Query: 387 HPMLFFSRAEVAELQLRAASSHEHIAERLTEAVRTMLSSPLEYLPPWDPKEYSARWNEIY 566
HP L+F E+ ++ ++ +SH H+ + AV MLS+P YLPP +++A+WNEIY
Sbjct: 72 HPSLYFDAGEIQAMRQKSRASHLHLFRAIRSAVTVMLSNPTYYLPPPKHADFAAKWNEIY 131
Query: 567 GNNLGALAMFCVLYPDNIEARDMAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAY 746
GNNL LA++C+L P++ A + +YM+RM WLV++AP DEVP+ HSL GFATA+
Sbjct: 132 GNNLPPLALYCLLCPEDKVAFEFVLEYMDRMVGYKDWLVENAPGDEVPIGHSLTGFATAF 191
Query: 747 DFLYNYLSKTQQERFLEVIANASGYMYETSYRRGWGFSYLHNHQPTNCMALLTGSLV 917
DFLYN L +++++LE I + MYE S R WG LHNHQ TN +ALLTG+LV
Sbjct: 192 DFLYNLLDNHRRQKYLEKIWVITEEMYEYSKVRSWGKQLLHNHQATNMIALLTGALV 248
Score = 36.6 bits (83), Expect(2) = 6e-50
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 974 IMKKSLVLAPEVTDGSLYEGVAYGTYPLDHSFRICFLVQ 1090
+M+K++ L + DGSL EGVAYG+Y + FL Q
Sbjct: 267 VMEKTMFLLNHIVDGSLDEGVAYGSYTAKSVTQYVFLAQ 305
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,236,592
Number of extensions: 1231443
Number of successful extensions: 5433
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5406
Number of HSP's successfully gapped: 6
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013344
(1117 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 926 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 926 bits (467), Expect = 0.0
Identities = 470/471 (99%)
Strand = Plus / Minus
Query: 208 gatctttcgaagatggtttggctgccttggagattgagagatctgatgccacgatgagga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92286929 gatctttcgaagatggtttggctgccttggagattgagagatctgatgccacgatgagga 92286870
Query: 268 ctcacacacggggggctcccagtgtgtttttcatatatttgttttgcctagcatccgcct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92286869 ctcacacacggggggctcccagtgtgtttttcatatatttgttttgcctagcatccgcct 92286810
Query: 328 acgtcaccgacgagaacccgaaagtcatgatccccttcaccaacgccaactacgacagcc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92286809 acgtcaccgacgagaacccgaaagtcatgatccccttcaccaacgccaactacgacagcc 92286750
Query: 388 accccatgctcttcttctccagggcggaggtggccgagctgcagctcagggccgccagct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92286749 accccatgctcttcttctccagggcggaggtggccgagctgcagctcagggccgccagct 92286690
Query: 448 cacacgagcacattgccgagcgcctcactgaggccgtgcgcaccatgctgtccagccccc 507
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 92286689 cacacgagcacattgccgagcgcctcattgaggccgtgcgcaccatgctgtccagccccc 92286630
Query: 508 tggagtacctccctccctgggatcccaaagagtacagcgcccgctggaatgagatttacg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92286629 tggagtacctccctccctgggatcccaaagagtacagcgcccgctggaatgagatttacg 92286570
Query: 568 gcaacaacctgggggccttggcaatgttctgcgtgctgtatcctgacaacattgaagcgc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92286569 gcaacaacctgggggccttggcaatgttctgcgtgctgtatcctgacaacattgaagcgc 92286510
Query: 628 gtgatatggccaaagactacatggagaggatggcagcgcagcctagttggt 678
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92286509 gtgatatggccaaagactacatggagaggatggcagcgcagcctagttggt 92286459
Score = 484 bits (244), Expect = e-134
Identities = 253/256 (98%)
Strand = Plus / Minus
Query: 676 ggttggtgaaagatgccccttgggacgaggtccctctcgcccactccctggttggttttg 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92259399 ggttggtgaaagatgccccttgggacgaggtccctctcgcccactccctggttggttttg 92259340
Query: 736 ccactgcctacgacttcttgtacaactacctgagcaagacacaacaggagaggtttcttg 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92259339 ccactgcctacgacttcttgtacaactacctgagcaagacacaacaggagaggtttcttg 92259280
Query: 796 aagtgattgccaatgcctcaggatatatgtatgaaacgtcctacaggagaggatggggat 855
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 92259279 aagtgattgccaatgcctcaggatatatgtatgaaacgtcctacaggagagggtggggat 92259220
Query: 856 tttcatacctgcacaaccatcagcccaccaactgtatggccttgctcactggaagcctcg 915
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92259219 ttcaatacctgcacaaccatcagcccaccaactgtatggccttgctcactggaagcctcg 92259160
Query: 916 ttctgatgaatcaagg 931
||||||||||||||||
Sbjct: 92259159 ttctgatgaatcaagg 92259144
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Plus
Query: 1 gcagtagcgccgcccgaggctgcagcggcgcatcccgtggcgctgcgcccacccgcaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92162933 gcagtagcgccgcccgaggctgcagcggcgcatcccgtggcgctgcgcccacccgcaccc 92162992
Query: 61 atggcgcggcgggtgcgccgagggttcggctcagagggcgccggggacccgggagccctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92162993 atggcgcggcgggtgcgccgagggttcggctcagagggcgccggggacccgggagccctg 92163052
Query: 121 gagtgaaggaggctggggaggggttccagagcctgggcccaggctggagaggcgacgccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92163053 gagtgaaggaggctggggaggggttccagagcctgggcccaggctggagaggcgacgccc 92163112
Query: 181 gagaggacgaagccgcggcggggagcag 208
||||||||||||||||||||||||||||
Sbjct: 92163113 gagaggacgaagccgcggcggggagcag 92163140
Score = 232 bits (117), Expect = 3e-58
Identities = 180/193 (93%), Gaps = 6/193 (3%)
Strand = Plus / Minus
Query: 929 agggtatctcccggaagcttacttatggac-aaacaaggtctgaccatcatgaagaagtc 987
||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct: 92254218 agggtatctccaggaagcttacttatggaccaaacaagttctgaccatcatggagaagtc 92254159
Query: 988 tctggtcctggctcc-agaggtgacagacgggtccctctatgaaggcgttgcatatggca 1046
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92254158 tctggtcctg-ctccgagaggtgacagacgggtccctctatgaaggcgttgcatatggca 92254100
Query: 1047 cctat-ccactagatcactccttcagaatatgtttcttggtccaga-gcactttgacatc 1104
|||| |||||||||||||| ||||| ||||||||||| || |||| |||||||||||||
Sbjct: 92254099 gctataccactagatcactctttcagtatatgtttctt-gttcagaggcactttgacatc 92254041
Query: 1105 aaccactttggcc 1117
|||||||||||||
Sbjct: 92254040 aaccactttggcc 92254028
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,034,159
Number of extensions: 207
Number of successful extensions: 207
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 4
Length of query: 1117
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1096
Effective length of database: 2,808,413,156
Effective search space: 3078020818976
Effective search space used: 3078020818976
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)