Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013353
(1104 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039796.1| sorting nexin 6 [Bos taurus]. 480 e-135
Alignment gi|NP_001029636.1| sorting nexin-5 [Bos taurus]. 397 e-117
Alignment gi|NP_001033608.1| sorting nexin-2 [Bos taurus]. 66 6e-11
Alignment gi|NP_001039572.2| sorting nexin-1 [Bos taurus]. 65 1e-10
Alignment gi|NP_001157409.1| sorting nexin 7 [Bos taurus]. 53 5e-07
>ref|NP_001039796.1| sorting nexin 6 [Bos taurus].
Length = 244
Score = 480 bits (1235), Expect = e-135
Identities = 237/239 (99%), Positives = 239/239 (100%)
Frame = +1
Query: 58 MMEGLDDGPDFLSDEDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFK 237
MMEGLDDGPDFLS+EDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFK
Sbjct: 1 MMEGLDDGPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFK 60
Query: 238 QNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKE 417
QNEFSVVRQHEEFIWLHDSF+ENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKE
Sbjct: 61 QNEFSVVRQHEEFIWLHDSFIENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKE 120
Query: 418 EFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNK 597
EFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNK
Sbjct: 121 EFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNK 180
Query: 598 KEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHK 774
KEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHK
Sbjct: 181 KEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHK 239
>ref|NP_001029636.1| sorting nexin-5 [Bos taurus].
Length = 404
Score = 397 bits (1019), Expect(2) = e-117
Identities = 191/284 (67%), Positives = 238/284 (83%), Gaps = 1/284 (0%)
Frame = +1
Query: 97 DEDRG-LKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEE 273
+EDR L++++VDL D +LQ+DI DALSERDKVKFTVHTK++LP F+ EFSV RQHE+
Sbjct: 12 EEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHED 71
Query: 274 FIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAE 453
F+WLHD+ +E DYAG IIPPAP +PDFD REK+QKLGEGEGSMTKEEF KMKQELEAE
Sbjct: 72 FVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAE 131
Query: 454 YLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMV 633
YLA+FKKTV+ HEVFL R+++HP+L KD NFHVFLEY+QDLSVR KN KE FFK++V
Sbjct: 132 YLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVV 191
Query: 634 KSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSL 813
KSAD V+ SGVK+VDDFFE E+TFL+ Y+NR+KD+ AK+DRMTRSHK+ ADDY + L
Sbjct: 192 KSADEVLFSGVKEVDDFFEQEKTFLINYYNRIKDSCAKADRMTRSHKNVADDYIHTAACL 251
Query: 814 YALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
++L ++ T I K+ LKV+ELF+K RK+E+RVS+DEDLKL++LL
Sbjct: 252 HSLALEEPTVIKKYLLKVAELFEKLRKVESRVSSDEDLKLTELL 295
Score = 44.7 bits (104), Expect(2) = e-117
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +2
Query: 965 QAAKDLLYRRSRSLVDYENANKALG*RRAK 1054
+AAKDLLYRR+++L+DYEN+NKAL R K
Sbjct: 303 EAAKDLLYRRTKALIDYENSNKALDKARLK 332
>ref|NP_001033608.1| sorting nexin-2 [Bos taurus].
Length = 519
Score = 65.9 bits (159), Expect = 6e-11
Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 11/293 (3%)
Frame = +1
Query: 103 DRGLKAINVDLQSDAALQVDISDALSERDKV--------KFTVHTKSSLPNFKQNEFSVV 258
DR I + D DI +S+ +KV + V TK+SL F ++EFSV
Sbjct: 125 DRSRDEIEEEANGDV---FDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVK 181
Query: 259 RQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQ 438
R+ +F+ LH + GYI+PPAP + ++ K+ K E S + E K +
Sbjct: 182 RRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGK----EDSSSTEFVEKRRA 237
Query: 439 ELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDF 618
LE +L R HP L +D + FLE + +L +
Sbjct: 238 ALER---------------YLQRTVKHPTLLQDPDLRQFLE-SSELPRAVNTQALSGAGI 281
Query: 619 FKNMVKSADGVIVSGVK--DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDY 792
+ + K+AD V +K + D +FE ++ +++ A + + K + +
Sbjct: 282 LRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENQDQQLRKLHASVEALVCHRKELSANT 341
Query: 793 NRIGSSLYALG-TQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
S LG ++D T + + +++E+ +K ++ + + S+LL+
Sbjct: 342 AAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLS 394
>ref|NP_001039572.2| sorting nexin-1 [Bos taurus].
Length = 522
Score = 65.1 bits (157), Expect = 1e-10
Identities = 60/276 (21%), Positives = 123/276 (44%), Gaps = 11/276 (3%)
Frame = +1
Query: 154 QVDISDALSERDK--------VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENE 309
Q D++ +++ +K V + V T++SLP F+ F+V R+ +F+ L++ E
Sbjct: 142 QFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKHFAVKRRFSDFLGLYEKLSEKH 201
Query: 310 DYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMH 489
G+I+PP P + ++ K+ K E S + E K + LE
Sbjct: 202 SQNGFIVPPPPEKSLIGMTKVKVGK----EDSSSAEFLEKRRAALER------------- 244
Query: 490 EVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGV--IVSG 663
+L R+ HP + +D + FLE ++L + K K+ D V +
Sbjct: 245 --YLQRIVNHPTMLQDPDVREFLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIN 301
Query: 664 VKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDST 840
+ + D +FE + + R++ A + + K A + + SL LG ++D+T
Sbjct: 302 MNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNT 361
Query: 841 DICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
+ + +++E+ +K ++ + ++ L++LL+
Sbjct: 362 ALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLS 397
>ref|NP_001157409.1| sorting nexin 7 [Bos taurus].
Length = 451
Score = 52.8 bits (125), Expect = 5e-07
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 3/243 (1%)
Frame = +1
Query: 193 VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASRE 372
+ + + TK+S F +EF V R++++F+WL + E + IIPP P E
Sbjct: 114 ITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKEKL--EEAHPTLIIPPLP---------E 162
Query: 373 KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHV 552
K + +G ++F + +++ A+H+ FL R+A HP L + +F +
Sbjct: 163 KF--IVKGMVERFNDDFIETRRK-------------ALHK-FLNRIADHPTLTFNEDFKI 206
Query: 553 FLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVS--GVKDVDDFFEHERTFLLEYHNR 726
FL S +KK+ M +S V +S GVK + F F+ + +
Sbjct: 207 FL--TAQASEFSSHKKQG-PGLLSRMGQSVRAVALSMRGVKSRPEEFMEMNNFIEIFSQK 263
Query: 727 VKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRK-IEA 903
+ S R+ + + D+ G ++ L + D+ V+ DK K E
Sbjct: 264 INLIDKISQRIYKEEREYLDEMKEYG-PIHILWSASEEDLADTLKSVASCIDKCCKATEK 322
Query: 904 RVS 912
R+S
Sbjct: 323 RMS 325
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,170,951
Number of extensions: 650177
Number of successful extensions: 2161
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2150
Number of HSP's successfully gapped: 6
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013353
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013353
(1104 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547770.2| PREDICTED: similar to sorting nexin 6 [Canis fa... 491 e-143
Alignment gi|XP_540847.2| PREDICTED: similar to Sorting nexin-6 (TRAF4-as... 392 e-117
Alignment gi|XP_542877.2| PREDICTED: similar to Sorting nexin-5 [Canis fa... 393 e-116
Alignment gi|XP_865548.1| PREDICTED: similar to sorting nexin 1 isoform c... 66 5e-11
Alignment gi|XP_535509.2| PREDICTED: similar to Sorting nexin-1 isoform 1... 66 5e-11
Alignment gi|XP_865581.1| PREDICTED: similar to sorting nexin 1 isoform b... 66 7e-11
Alignment gi|XP_531886.2| PREDICTED: similar to sorting nexin 2 isoform 1... 65 9e-11
Alignment gi|XP_851839.1| PREDICTED: similar to sorting nexin 6 [Canis fa... 59 8e-09
Alignment gi|XP_859551.1| PREDICTED: similar to Sorting nexin-2 isoform 3... 53 5e-07
Alignment gi|XP_547269.2| PREDICTED: similar to Sorting nexin-7 [Canis fa... 49 9e-06
>ref|XP_547770.2| PREDICTED: similar to sorting nexin 6 [Canis familiaris].
Length = 411
Score = 491 bits (1263), Expect(2) = e-143
Identities = 256/296 (86%), Positives = 259/296 (87%)
Frame = +1
Query: 58 MMEGLDDGPDFLSDEDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFK 237
++EGLDDGPDFLS+EDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHTK
Sbjct: 43 LLEGLDDGPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHTK------- 95
Query: 238 QNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKE 417
IPPAPPRPDFDASREKLQKLGEGEGSMTKE
Sbjct: 96 ------------------------------IPPAPPRPDFDASREKLQKLGEGEGSMTKE 125
Query: 418 EFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNK 597
EFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNK
Sbjct: 126 EFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNK 185
Query: 598 KEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKS 777
KEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKS
Sbjct: 186 KEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKS 245
Query: 778 AADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
AADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL
Sbjct: 246 AADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 301
Score = 38.5 bits (88), Expect(2) = e-143
Identities = 29/59 (49%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +3
Query: 945 KYYLR------DLKLLRISSIEDLGH*WIMKMLIKHWDKEERKNWKDVLQAETSQQLCC 1103
KYYLR DL R S+ D + K DK KN KDVLQAETSQQLCC
Sbjct: 302 KYYLRESQAAKDLLYRRSRSLVDYEN------ANKALDKARAKN-KDVLQAETSQQLCC 353
Score = 58.9 bits (141), Expect = 8e-09
Identities = 37/70 (52%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = +2
Query: 854 FFLKFQNCLTKQEK*KHECQL---MRTSNFLTF*ILLKRSQAAKDLLYRRSRSLVDYENA 1024
FFLK K K + ++ S+ L + L+ SQAAKDLLYRRSRSLVDYENA
Sbjct: 271 FFLKVSELFDKTRKIEARVSADEDLKLSDLLKY--YLRESQAAKDLLYRRSRSLVDYENA 328
Query: 1025 NKALG*RRAK 1054
NKAL RAK
Sbjct: 329 NKALDKARAK 338
>ref|XP_540847.2| PREDICTED: similar to Sorting nexin-6 (TRAF4-associated factor 2)
[Canis familiaris].
Length = 402
Score = 392 bits (1008), Expect(2) = e-117
Identities = 193/279 (69%), Positives = 236/279 (84%), Gaps = 3/279 (1%)
Frame = +1
Query: 118 AINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSF 297
+++VDLQ D++LQV+ISDA+SERDKVKFTV TKS LP+F Q EFSVVRQHEEFIWLHD++
Sbjct: 14 SVSVDLQGDSSLQVEISDAVSERDKVKFTVQTKSCLPHFTQLEFSVVRQHEEFIWLHDAY 73
Query: 298 VENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKT 477
VENE+YAG IIPPAPPRPDF+ASREKLQKLGEG+ S+T+EEF KMKQELEAEYLAIFKKT
Sbjct: 74 VENEEYAGLIIPPAPPRPDFEASREKLQKLGEGDSSITREEFAKMKQELEAEYLAIFKKT 133
Query: 478 VAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIV 657
VAMHEVFL R+AAHP LR+D NF VFLEY QDLSVRGKN+KE L + +N+VKSAD ++
Sbjct: 134 VAMHEVFLQRLAAHPTLRRDHNFFVFLEYGQDLSVRGKNRKELLGGYLRNIVKSADEALI 193
Query: 658 ---SGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGT 828
SG+K+VDDFFEHERTFLLEYH R++DA ++DR+ SHK ADDY I ++L +LG
Sbjct: 194 TRMSGLKEVDDFFEHERTFLLEYHTRIRDACLRADRVMYSHKCLADDYIPISAALNSLGV 253
Query: 829 QDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
Q+ + FLK++E F++ RK+E RV++DEDLKLSD+L
Sbjct: 254 QEVNQLKMSFLKLAEFFERLRKLEGRVASDEDLKLSDML 292
Score = 48.5 bits (114), Expect(2) = e-117
Identities = 24/37 (64%), Positives = 28/37 (75%)
Frame = +2
Query: 953 LKRSQAAKDLLYRRSRSLVDYENANKALG*RRAKKLE 1063
++ SQAAKDLLYRR R+L DYENANKAL R + E
Sbjct: 296 MRDSQAAKDLLYRRLRALADYENANKALDKARTRNRE 332
>ref|XP_542877.2| PREDICTED: similar to Sorting nexin-5 [Canis familiaris].
Length = 404
Score = 393 bits (1009), Expect(3) = e-116
Identities = 189/283 (66%), Positives = 236/283 (83%), Gaps = 1/283 (0%)
Frame = +1
Query: 100 EDRG-LKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEEF 276
EDR L++++VDL D +LQ+DI DALSERDKVKFTVHTK++LP F+ EFSV RQHE+F
Sbjct: 13 EDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDF 72
Query: 277 IWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEY 456
+WLHD+ +E DYAG IIPPAP +PDFD REK+QKLGEGEGSMTKEEF KMKQELEAEY
Sbjct: 73 VWLHDTLIETADYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEY 132
Query: 457 LAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVK 636
LA+FKKTV+ HEVFL R+++HP+L KD NFHVFLEY+QDLSVR KN KE FFK++VK
Sbjct: 133 LAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVK 192
Query: 637 SADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLY 816
SAD V+ SGVK+VDDFFE E+ FL+ Y+NR+KD+ AK+D+MTRSHK+ ADDY + L+
Sbjct: 193 SADEVLFSGVKEVDDFFEQEKNFLINYYNRIKDSCAKADKMTRSHKNVADDYIHTAACLH 252
Query: 817 ALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
+L ++ T I K+ LKV+ELF+K RK+E+RVS+DEDLKL++LL
Sbjct: 253 SLALEEPTVIKKYLLKVAELFEKLRKVESRVSSDEDLKLTELL 295
Score = 43.5 bits (101), Expect(3) = e-116
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +2
Query: 965 QAAKDLLYRRSRSLVDYENANKALG*RRAK 1054
+AAKDLLYRR+++L DYEN+NKAL R K
Sbjct: 303 EAAKDLLYRRTKALTDYENSNKALDKARLK 332
Score = 23.1 bits (48), Expect(3) = e-116
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 1029 KHWDKEERKNWKDVLQAETSQQLCC 1103
K DK K+ KDV AE+ QQ CC
Sbjct: 324 KALDKARLKS-KDVKLAESHQQECC 347
>ref|XP_865548.1| PREDICTED: similar to sorting nexin 1 isoform c isoform 2 [Canis
familiaris].
Length = 473
Score = 66.2 bits (160), Expect = 5e-11
Identities = 61/276 (22%), Positives = 124/276 (44%), Gaps = 11/276 (3%)
Frame = +1
Query: 154 QVDISDALSERDK--------VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENE 309
Q D++ +++ +K V + V T++SLP F+ +F+V R+ +F+ L++ E
Sbjct: 141 QFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFAVKRRFSDFLGLYEKLSEKH 200
Query: 310 DYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMH 489
G+I+PP P + ++ K+ K E S + E K + LE
Sbjct: 201 SQNGFIVPPPPEKSLIGMTKVKVGK----EDSSSAEFLEKRRAALER------------- 243
Query: 490 EVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK 669
+L R+ HP + +D + FLE ++L + K K+ D V +K
Sbjct: 244 --YLQRIVNHPTMLQDPDVREFLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIK 300
Query: 670 --DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDST 840
+ D +FE + + R++ A + + K A + + SL LG ++D+T
Sbjct: 301 MNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNT 360
Query: 841 DICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
+ + +++E+ +K ++ + ++ L++LL+
Sbjct: 361 ALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLS 396
>ref|XP_535509.2| PREDICTED: similar to Sorting nexin-1 isoform 1 [Canis familiaris].
Length = 521
Score = 66.2 bits (160), Expect = 5e-11
Identities = 61/276 (22%), Positives = 124/276 (44%), Gaps = 11/276 (3%)
Frame = +1
Query: 154 QVDISDALSERDK--------VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENE 309
Q D++ +++ +K V + V T++SLP F+ +F+V R+ +F+ L++ E
Sbjct: 141 QFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFAVKRRFSDFLGLYEKLSEKH 200
Query: 310 DYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMH 489
G+I+PP P + ++ K+ K E S + E K + LE
Sbjct: 201 SQNGFIVPPPPEKSLIGMTKVKVGK----EDSSSAEFLEKRRAALER------------- 243
Query: 490 EVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK 669
+L R+ HP + +D + FLE ++L + K K+ D V +K
Sbjct: 244 --YLQRIVNHPTMLQDPDVREFLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIK 300
Query: 670 --DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDST 840
+ D +FE + + R++ A + + K A + + SL LG ++D+T
Sbjct: 301 MNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNT 360
Query: 841 DICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
+ + +++E+ +K ++ + ++ L++LL+
Sbjct: 361 ALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLS 396
>ref|XP_865581.1| PREDICTED: similar to sorting nexin 1 isoform b isoform 4 [Canis
familiaris].
Length = 456
Score = 65.9 bits (159), Expect = 7e-11
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 3/255 (1%)
Frame = +1
Query: 193 VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASRE 372
V + V T++SLP F+ +F+V R+ +F+ L++ E G+I+PP P + ++
Sbjct: 97 VAYKVTTQTSLPMFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 156
Query: 373 KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHV 552
K+ K E S + E K + LE +L R+ HP + +D +
Sbjct: 157 KVGK----EDSSSAEFLEKRRAALER---------------YLQRIVNHPTMLQDPDVRE 197
Query: 553 FLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK--DVDDFFEHERTFLLEYHNR 726
FLE ++L + K K+ D V +K + D +FE + + R
Sbjct: 198 FLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQR 256
Query: 727 VKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDSTDICKFFLKVSELFDKTRKIEA 903
++ A + + K A + + SL LG ++D+T + + +++E+ +K ++
Sbjct: 257 LRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQ 316
Query: 904 RVSADEDLKLSDLLN 948
+ ++ L++LL+
Sbjct: 317 EQANNDFFLLAELLS 331
>ref|XP_531886.2| PREDICTED: similar to sorting nexin 2 isoform 1 [Canis familiaris].
Length = 398
Score = 65.5 bits (158), Expect = 9e-11
Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 11/274 (4%)
Frame = +1
Query: 160 DISDALSERDKV--------KFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDY 315
DI +S+ +KV + V TK+SL F ++EFSV R+ +F+ LH +
Sbjct: 20 DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 79
Query: 316 AGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEV 495
GYI+PPAP + ++ K+ K E S + E K + LE
Sbjct: 80 VGYIVPPAPEKSIVGMTKVKVGK----EDSSSTEFVEKRRAALER--------------- 120
Query: 496 FLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK-- 669
+L R HP L +D + FLE + +L + + + K+AD V +K
Sbjct: 121 YLQRTVKHPTLLQDPDLRQFLE-SSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMN 179
Query: 670 DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDSTDI 846
+ D +FE ++ +++ A + + K + + S LG ++D T +
Sbjct: 180 ESDAWFEEKQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTAL 239
Query: 847 CKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
+ +++E+ +K ++ + + S+LL+
Sbjct: 240 SRALSQLAEVEEKIDQLHQEQAFADFYMFSELLS 273
>ref|XP_851839.1| PREDICTED: similar to sorting nexin 6 [Canis familiaris].
Length = 185
Score = 58.9 bits (141), Expect = 8e-09
Identities = 36/66 (54%), Positives = 43/66 (65%)
Frame = +2
Query: 857 FLKFQNCLTKQEK*KHECQLMRTSNFLTF*ILLKRSQAAKDLLYRRSRSLVDYENANKAL 1036
FL + TK E + ++ S+ L + L+ SQAAKDLLYRRSRSLVDYENANKAL
Sbjct: 49 FLNYNFIATKIEARVSADEDLKLSDLLKY--YLRESQAAKDLLYRRSRSLVDYENANKAL 106
Query: 1037 G*RRAK 1054
RAK
Sbjct: 107 DKARAK 112
>ref|XP_859551.1| PREDICTED: similar to Sorting nexin-2 isoform 3 [Canis familiaris].
Length = 124
Score = 53.1 bits (126), Expect = 5e-07
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Frame = +1
Query: 103 DRGLKAINVDLQSDAALQVDISDALSERDKV--------KFTVHTKSSLPNFKQNEFSVV 258
DR + I + D DI +S+ +KV + V TK+SL F ++EFSV
Sbjct: 8 DRSREEIEEEANGDV---FDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVK 64
Query: 259 RQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQ 438
R+ +F+ LH + GYI+PPAP + ++ K+ K E S + E K +
Sbjct: 65 RRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGK----EDSSSTEFVEKRRA 120
Query: 439 ELE 447
LE
Sbjct: 121 ALE 123
>ref|XP_547269.2| PREDICTED: similar to Sorting nexin-7 [Canis familiaris].
Length = 458
Score = 48.9 bits (115), Expect = 9e-06
Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 4/244 (1%)
Frame = +1
Query: 193 VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASRE 372
+ + + TK+S F +EF V R++++F+WL E + IIPP P E
Sbjct: 118 ITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKL--EEAHPTLIIPPLP---------E 166
Query: 373 KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHV 552
K + +G ++F + +++ A+H+ FL R+A HP L + +F V
Sbjct: 167 KF--IVKGMVERFNDDFIETRRK-------------ALHK-FLNRIADHPTLTFNEDFKV 210
Query: 553 FLEYNQ-DLSVRGKNKKEKLEDFFKNMVKSADGVIVS--GVKDVDDFFEHERTFLLEYHN 723
FL +LS + K++ M ++ V +S GVK + F F+ +
Sbjct: 211 FLTAQAWELS----SHKKQGPGLLSRMGQTVRAVAMSMRGVKSRPEEFMEMNNFIEIFSQ 266
Query: 724 RVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRK-IE 900
++ S R+ + + +D+ G ++ L + D+ V+ D+ K E
Sbjct: 267 KINLIDKISQRIYKEEREYSDEMKEYG-PIHVLWSASEEDLVDTLKGVASCIDQCCKATE 325
Query: 901 ARVS 912
R+S
Sbjct: 326 KRMS 329
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,553,948
Number of extensions: 674559
Number of successful extensions: 2242
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2228
Number of HSP's successfully gapped: 16
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013353
(1104 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122575.1| PREDICTED: sorting nexin-32 [Sus scrofa]. 390 e-115
Alignment gi|XP_003134314.2| PREDICTED: sorting nexin-5 isoform 2 [Sus sc... 265 8e-78
Alignment gi|XP_003362220.1| PREDICTED: sorting nexin-1-like, partial [Su... 67 2e-11
Alignment gi|XP_003353368.1| PREDICTED: sorting nexin-1 isoform 3 [Sus sc... 67 2e-11
Alignment gi|XP_001928534.3| PREDICTED: sorting nexin-1 isoform 1 [Sus sc... 67 2e-11
Alignment gi|XP_003360918.1| PREDICTED: sorting nexin-2 [Sus scrofa]. 67 2e-11
Alignment gi|XP_003353367.1| PREDICTED: sorting nexin-1 isoform 2 [Sus sc... 67 2e-11
Alignment gi|XP_001928303.3| PREDICTED: sorting nexin-6, partial [Sus scr... 46 4e-10
Alignment gi|XP_003361225.1| PREDICTED: sorting nexin-7-like [Sus scrofa]. 50 3e-06
Alignment gi|XP_003125946.2| PREDICTED: sorting nexin-7-like [Sus scrofa]. 50 3e-06
>ref|XP_003122575.1| PREDICTED: sorting nexin-32 [Sus scrofa].
Length = 403
Score = 390 bits (1001), Expect(2) = e-115
Identities = 192/277 (69%), Positives = 235/277 (84%), Gaps = 3/277 (1%)
Frame = +1
Query: 124 NVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVE 303
+++LQ D++LQV+ISDA+SERDKVKFTV TKS LP+F Q EFSVVR HEEFIWLHD++VE
Sbjct: 17 SLNLQGDSSLQVEISDAVSERDKVKFTVQTKSCLPHFAQTEFSVVRLHEEFIWLHDAYVE 76
Query: 304 NEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVA 483
NEDYAG IIPPAPPRPDF+ASREKLQKLGEG+ S+T+EEF KMKQELEAEYLAIFKKTVA
Sbjct: 77 NEDYAGLIIPPAPPRPDFEASREKLQKLGEGDSSVTREEFAKMKQELEAEYLAIFKKTVA 136
Query: 484 MHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIV-- 657
MHEVFL R+AAHP LR+D NF VFLEY QDLSVRGKN+KE L F +N+VKSAD ++
Sbjct: 137 MHEVFLQRLAAHPTLRRDHNFFVFLEYGQDLSVRGKNRKELLGGFLRNIVKSADEALITG 196
Query: 658 -SGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQD 834
SG+K+VD+FFEHERTFLLEYH R++DA ++DR+ SHK ADDY I ++L +LGTQ+
Sbjct: 197 MSGLKEVDEFFEHERTFLLEYHPRIRDACLRADRVMHSHKCLADDYIPISAALSSLGTQE 256
Query: 835 STDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
+ FLK++ELF++ RK+E RV++D+DLKLSD+L
Sbjct: 257 VNQLKMSFLKLAELFERLRKLEGRVASDQDLKLSDML 293
Score = 45.8 bits (107), Expect(2) = e-115
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +2
Query: 962 SQAAKDLLYRRSRSLVDYENANKALG*RRAKKLE 1063
SQAAKDLLYRR R+L DYENA+KAL R + E
Sbjct: 300 SQAAKDLLYRRLRALADYENASKALDKARTRNRE 333
>ref|XP_003134314.2| PREDICTED: sorting nexin-5 isoform 2 [Sus scrofa].
Length = 299
Score = 265 bits (676), Expect(2) = 8e-78
Identities = 128/190 (67%), Positives = 161/190 (84%)
Frame = +1
Query: 376 LQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVF 555
+QKLGEGEGSMTKEEF KMKQELEAEYLA+FKKTV+ HEVFL R+++HP+L KD NFHVF
Sbjct: 1 MQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVF 60
Query: 556 LEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKD 735
LEY+QDLSVR KN KE FFK++VKSAD V+ SGVK+VDDFFE E+ FL+ Y+NR+KD
Sbjct: 61 LEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFSGVKEVDDFFEQEKNFLINYYNRIKD 120
Query: 736 ASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSA 915
+ AK+DRMTRSHK+ ADDY + L++L +++ T I K+ LKV+ELF+K RK+E+RVS+
Sbjct: 121 SCAKADRMTRSHKNVADDYIHTAACLHSLASEEPTVIKKYLLKVAELFEKLRKVESRVSS 180
Query: 916 DEDLKLSDLL 945
DEDLKL++LL
Sbjct: 181 DEDLKLTELL 190
Score = 44.7 bits (104), Expect(2) = 8e-78
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +2
Query: 965 QAAKDLLYRRSRSLVDYENANKALG*RRAK 1054
+AAKDLLYRR+++L+DYEN+NKAL R K
Sbjct: 198 EAAKDLLYRRTKALIDYENSNKALDKARLK 227
>ref|XP_003362220.1| PREDICTED: sorting nexin-1-like, partial [Sus scrofa].
Length = 379
Score = 67.0 bits (162), Expect = 2e-11
Identities = 62/276 (22%), Positives = 124/276 (44%), Gaps = 11/276 (3%)
Frame = +1
Query: 154 QVDISDALSERDK--------VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENE 309
Q D++ +++ +K V + V T++SLP F+ +FSV R+ +F+ L++ E
Sbjct: 89 QFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKH 148
Query: 310 DYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMH 489
G+I+PP P + ++ K+ K E S + E K + LE
Sbjct: 149 SQNGFIVPPPPEKSLIGMTKVKVGK----EDSSSAEFLEKRRAALER------------- 191
Query: 490 EVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK 669
+L R+ HP + +D + FLE ++L + K K+ D V +K
Sbjct: 192 --YLQRIVNHPTMVQDPDVREFLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIK 248
Query: 670 --DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDST 840
+ D +FE + + R++ A + + K A + + SL LG ++D+T
Sbjct: 249 MNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNT 308
Query: 841 DICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
+ + +++E+ +K ++ + ++ L++LL+
Sbjct: 309 ALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLS 344
>ref|XP_003353368.1| PREDICTED: sorting nexin-1 isoform 3 [Sus scrofa].
Length = 474
Score = 67.0 bits (162), Expect = 2e-11
Identities = 62/276 (22%), Positives = 124/276 (44%), Gaps = 11/276 (3%)
Frame = +1
Query: 154 QVDISDALSERDK--------VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENE 309
Q D++ +++ +K V + V T++SLP F+ +FSV R+ +F+ L++ E
Sbjct: 142 QFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKH 201
Query: 310 DYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMH 489
G+I+PP P + ++ K+ K E S + E K + LE
Sbjct: 202 SQNGFIVPPPPEKSLIGMTKVKVGK----EDSSSAEFLEKRRAALER------------- 244
Query: 490 EVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK 669
+L R+ HP + +D + FLE ++L + K K+ D V +K
Sbjct: 245 --YLQRIVNHPTMVQDPDVREFLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIK 301
Query: 670 --DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDST 840
+ D +FE + + R++ A + + K A + + SL LG ++D+T
Sbjct: 302 MNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNT 361
Query: 841 DICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
+ + +++E+ +K ++ + ++ L++LL+
Sbjct: 362 ALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLS 397
>ref|XP_001928534.3| PREDICTED: sorting nexin-1 isoform 1 [Sus scrofa].
Length = 522
Score = 67.0 bits (162), Expect = 2e-11
Identities = 62/276 (22%), Positives = 124/276 (44%), Gaps = 11/276 (3%)
Frame = +1
Query: 154 QVDISDALSERDK--------VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENE 309
Q D++ +++ +K V + V T++SLP F+ +FSV R+ +F+ L++ E
Sbjct: 142 QFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKH 201
Query: 310 DYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMH 489
G+I+PP P + ++ K+ K E S + E K + LE
Sbjct: 202 SQNGFIVPPPPEKSLIGMTKVKVGK----EDSSSAEFLEKRRAALER------------- 244
Query: 490 EVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK 669
+L R+ HP + +D + FLE ++L + K K+ D V +K
Sbjct: 245 --YLQRIVNHPTMVQDPDVREFLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIK 301
Query: 670 --DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDST 840
+ D +FE + + R++ A + + K A + + SL LG ++D+T
Sbjct: 302 MNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNT 361
Query: 841 DICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
+ + +++E+ +K ++ + ++ L++LL+
Sbjct: 362 ALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLS 397
>ref|XP_003360918.1| PREDICTED: sorting nexin-2 [Sus scrofa].
Length = 559
Score = 66.6 bits (161), Expect = 2e-11
Identities = 68/293 (23%), Positives = 124/293 (42%), Gaps = 11/293 (3%)
Frame = +1
Query: 103 DRGLKAINVDLQSDAALQVDISDALSERDKV--------KFTVHTKSSLPNFKQNEFSVV 258
DR + I + D DI +S+ +KV + V TK+SL F ++EFSV
Sbjct: 165 DRSREEIEEEANGDV---FDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVK 221
Query: 259 RQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQ 438
R+ +F+ LH + GYI+PPAP + ++ K+ K E S + E K +
Sbjct: 222 RRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGK----EDSSSTEFVEKRRA 277
Query: 439 ELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDF 618
LE +L R HP L +D + FLE + +L +
Sbjct: 278 ALER---------------YLQRTVKHPTLLQDPDLRQFLE-SSELPRAVNTQALSGAGI 321
Query: 619 FKNMVKSADGVIVSGVK--DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDY 792
+ + K+AD V +K + D +FE ++ +++ A + + K + +
Sbjct: 322 LRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVEALVCHRKELSANT 381
Query: 793 NRIGSSLYALG-TQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
S LG ++D T + + +++E+ +K ++ + + S+LL+
Sbjct: 382 AAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLS 434
>ref|XP_003353367.1| PREDICTED: sorting nexin-1 isoform 2 [Sus scrofa].
Length = 457
Score = 66.6 bits (161), Expect = 2e-11
Identities = 59/255 (23%), Positives = 115/255 (45%), Gaps = 3/255 (1%)
Frame = +1
Query: 193 VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASRE 372
V + V T++SLP F+ +FSV R+ +F+ L++ E G+I+PP P + ++
Sbjct: 98 VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 157
Query: 373 KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHV 552
K+ K E S + E K + LE +L R+ HP + +D +
Sbjct: 158 KVGK----EDSSSAEFLEKRRAALER---------------YLQRIVNHPTMVQDPDVRE 198
Query: 553 FLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK--DVDDFFEHERTFLLEYHNR 726
FLE ++L + K K+ D V +K + D +FE + + R
Sbjct: 199 FLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQR 257
Query: 727 VKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDSTDICKFFLKVSELFDKTRKIEA 903
++ A + + K A + + SL LG ++D+T + + +++E+ +K ++
Sbjct: 258 LRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQ 317
Query: 904 RVSADEDLKLSDLLN 948
+ ++ L++LL+
Sbjct: 318 EQANNDFFLLAELLS 332
>ref|XP_001928303.3| PREDICTED: sorting nexin-6, partial [Sus scrofa].
Length = 99
Score = 45.8 bits (107), Expect(2) = 4e-10
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +2
Query: 977 DLLYRRSRSLVDYENANKALG*RRAK 1054
DLLYRRSRSLVDYENANKAL RAK
Sbjct: 1 DLLYRRSRSLVDYENANKALDKARAK 26
Score = 36.6 bits (83), Expect(2) = 4e-10
Identities = 19/25 (76%), Positives = 19/25 (76%)
Frame = +3
Query: 1029 KHWDKEERKNWKDVLQAETSQQLCC 1103
K DK KN KDVLQAETSQQLCC
Sbjct: 18 KALDKARAKN-KDVLQAETSQQLCC 41
>ref|XP_003361225.1| PREDICTED: sorting nexin-7-like [Sus scrofa].
Length = 446
Score = 49.7 bits (117), Expect = 3e-06
Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 4/244 (1%)
Frame = +1
Query: 193 VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASRE 372
+ + + TK+S F +EF V R++++F+WL + E + IIPP P E
Sbjct: 107 ITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKEKL--EEAHPTLIIPPLP---------E 155
Query: 373 KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHV 552
K + +G ++F + +++ A+H+ FL R+A HP L + +F V
Sbjct: 156 KF--IVKGMVERFNDDFIETRRK-------------ALHK-FLNRIADHPTLTFNEDFKV 199
Query: 553 FLEYNQ-DLSVRGKNKKEKLEDFFKNMVKSADGVIVS--GVKDVDDFFEHERTFLLEYHN 723
FL +LS + K++ M ++ V +S GVK + F F+ + +
Sbjct: 200 FLTAQAWELS----SHKKQGPGLLSRMGQTVRSVALSMRGVKSRPEEFMEMNNFIEIFSH 255
Query: 724 RVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRK-IE 900
++ S R+ + + D+ G ++ L + D+ V+ DK K E
Sbjct: 256 KINLIDKISQRIYKEERDYFDEMKEYG-PIHILWSASEEDLVDPLKGVASCLDKCCKATE 314
Query: 901 ARVS 912
R+S
Sbjct: 315 KRMS 318
>ref|XP_003125946.2| PREDICTED: sorting nexin-7-like [Sus scrofa].
Length = 583
Score = 49.7 bits (117), Expect = 3e-06
Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 4/244 (1%)
Frame = +1
Query: 193 VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASRE 372
+ + + TK+S F +EF V R++++F+WL + E + IIPP P E
Sbjct: 240 ITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKEKL--EEAHPTLIIPPLP---------E 288
Query: 373 KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHV 552
K + +G ++F + +++ A+H+ FL R+A HP L + +F V
Sbjct: 289 KF--IVKGMVERFNDDFIETRRK-------------ALHK-FLNRIADHPTLTFNEDFKV 332
Query: 553 FLEYNQ-DLSVRGKNKKEKLEDFFKNMVKSADGVIVS--GVKDVDDFFEHERTFLLEYHN 723
FL +LS + K++ M ++ V +S GVK + F F+ + +
Sbjct: 333 FLTAQAWELS----SHKKQGPGLLSRMGQTVRSVALSMRGVKSRPEEFMEMNNFIEIFSH 388
Query: 724 RVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRK-IE 900
++ S R+ + + D+ G ++ L + D+ V+ DK K E
Sbjct: 389 KINLIDKISQRIYKEERDYFDEMKEYG-PIHILWSASEEDLVDPLKGVASCLDKCCKATE 447
Query: 901 ARVS 912
R+S
Sbjct: 448 KRMS 451
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,931,390
Number of extensions: 411981
Number of successful extensions: 1395
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 13
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013353
(1104 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081274.2| sorting nexin-6 [Mus musculus]. 588 e-173
Alignment gi|NP_001186117.1| sorting nexin-5 [Mus musculus]. 389 e-116
Alignment gi|NP_077187.1| sorting nexin-5 [Mus musculus]. 389 e-116
Alignment gi|NP_001019731.1| sorting nexin-32 [Mus musculus]. 387 e-115
Alignment gi|NP_062701.2| sorting nexin-1 [Mus musculus]. 67 3e-11
Alignment gi|NP_080662.1| sorting nexin-2 [Mus musculus]. 65 7e-11
>ref|NP_081274.2| sorting nexin-6 [Mus musculus].
Length = 406
Score = 588 bits (1515), Expect(2) = e-173
Identities = 294/296 (99%), Positives = 296/296 (100%)
Frame = +1
Query: 58 MMEGLDDGPDFLSDEDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFK 237
MMEGLDDGPDFLS+EDRGLKAINVDLQSDAALQVDISDALSERD+VKFTVHTKSSLPNFK
Sbjct: 1 MMEGLDDGPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDRVKFTVHTKSSLPNFK 60
Query: 238 QNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKE 417
QNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKE
Sbjct: 61 QNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKE 120
Query: 418 EFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNK 597
EFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNK
Sbjct: 121 EFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNK 180
Query: 598 KEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKS 777
KEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKS
Sbjct: 181 KEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKS 240
Query: 778 AADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
AADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL
Sbjct: 241 AADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 296
Score = 38.5 bits (88), Expect(2) = e-173
Identities = 29/59 (49%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +3
Query: 945 KYYLR------DLKLLRISSIEDLGH*WIMKMLIKHWDKEERKNWKDVLQAETSQQLCC 1103
KYYLR DL R S+ D + K DK KN KDVLQAETSQQLCC
Sbjct: 297 KYYLRESQAAKDLLYRRSRSLVDYEN------ANKALDKARAKN-KDVLQAETSQQLCC 348
Score = 58.9 bits (141), Expect = 7e-09
Identities = 37/70 (52%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = +2
Query: 854 FFLKFQNCLTKQEK*KHECQL---MRTSNFLTF*ILLKRSQAAKDLLYRRSRSLVDYENA 1024
FFLK K K + ++ S+ L + L+ SQAAKDLLYRRSRSLVDYENA
Sbjct: 266 FFLKVSELFDKTRKIEARVSADEDLKLSDLLKY--YLRESQAAKDLLYRRSRSLVDYENA 323
Query: 1025 NKALG*RRAK 1054
NKAL RAK
Sbjct: 324 NKALDKARAK 333
>ref|NP_001186117.1| sorting nexin-5 [Mus musculus].
Length = 404
Score = 389 bits (999), Expect(3) = e-116
Identities = 188/284 (66%), Positives = 234/284 (82%), Gaps = 1/284 (0%)
Frame = +1
Query: 97 DEDRG-LKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEE 273
+EDR L++++VDL D +LQ+DI DALSERDKVKFTVHTK++L F+ EFSV RQHE+
Sbjct: 12 EEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLSTFQSPEFSVTRQHED 71
Query: 274 FIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAE 453
F+WLHD+ E DYAG IIPPAP +PDFD REK+QKLGEGEGSMTKEEF KMKQELEAE
Sbjct: 72 FVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAE 131
Query: 454 YLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMV 633
YLA+FKKTV+ HEVFL R+++HP+L KD NFHVFLEY+QDLSVR KN KE FFK++V
Sbjct: 132 YLAVFKKTVSTHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVV 191
Query: 634 KSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSL 813
KSAD V+ SGVK+VDDFFE E+ FL+ Y+NR+KD+ AK+D+MTRSHK+ ADDY + L
Sbjct: 192 KSADEVLFSGVKEVDDFFEQEKNFLINYYNRIKDSCAKADKMTRSHKNVADDYIHTAACL 251
Query: 814 YALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
++L ++ T I K+ LKV+ELF+K RK+E RVS+DEDLKL++LL
Sbjct: 252 HSLALEEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELL 295
Score = 44.7 bits (104), Expect(3) = e-116
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +2
Query: 965 QAAKDLLYRRSRSLVDYENANKALG*RRAK 1054
+AAKDLLYRR+++L+DYEN+NKAL R K
Sbjct: 303 EAAKDLLYRRTKALIDYENSNKALDKARLK 332
Score = 24.6 bits (52), Expect(3) = e-116
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 1029 KHWDKEERKNWKDVLQAETSQQLCC 1103
K DK K+ KDV AET QQ CC
Sbjct: 324 KALDKARLKS-KDVKLAETHQQECC 347
>ref|NP_077187.1| sorting nexin-5 [Mus musculus].
Length = 404
Score = 389 bits (999), Expect(3) = e-116
Identities = 188/284 (66%), Positives = 234/284 (82%), Gaps = 1/284 (0%)
Frame = +1
Query: 97 DEDRG-LKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEE 273
+EDR L++++VDL D +LQ+DI DALSERDKVKFTVHTK++L F+ EFSV RQHE+
Sbjct: 12 EEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLSTFQSPEFSVTRQHED 71
Query: 274 FIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAE 453
F+WLHD+ E DYAG IIPPAP +PDFD REK+QKLGEGEGSMTKEEF KMKQELEAE
Sbjct: 72 FVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAE 131
Query: 454 YLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMV 633
YLA+FKKTV+ HEVFL R+++HP+L KD NFHVFLEY+QDLSVR KN KE FFK++V
Sbjct: 132 YLAVFKKTVSTHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVV 191
Query: 634 KSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSL 813
KSAD V+ SGVK+VDDFFE E+ FL+ Y+NR+KD+ AK+D+MTRSHK+ ADDY + L
Sbjct: 192 KSADEVLFSGVKEVDDFFEQEKNFLINYYNRIKDSCAKADKMTRSHKNVADDYIHTAACL 251
Query: 814 YALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
++L ++ T I K+ LKV+ELF+K RK+E RVS+DEDLKL++LL
Sbjct: 252 HSLALEEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELL 295
Score = 44.7 bits (104), Expect(3) = e-116
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +2
Query: 965 QAAKDLLYRRSRSLVDYENANKALG*RRAK 1054
+AAKDLLYRR+++L+DYEN+NKAL R K
Sbjct: 303 EAAKDLLYRRTKALIDYENSNKALDKARLK 332
Score = 24.6 bits (52), Expect(3) = e-116
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 1029 KHWDKEERKNWKDVLQAETSQQLCC 1103
K DK K+ KDV AET QQ CC
Sbjct: 324 KALDKARLKS-KDVKLAETHQQECC 347
>ref|NP_001019731.1| sorting nexin-32 [Mus musculus].
Length = 404
Score = 387 bits (994), Expect(2) = e-115
Identities = 190/277 (68%), Positives = 236/277 (85%), Gaps = 3/277 (1%)
Frame = +1
Query: 124 NVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVE 303
+VDLQ D+ LQV+ISDA+SERDKVKFTV TKS LP+F Q+EFSVVRQHEEFIWLHD++VE
Sbjct: 18 SVDLQGDSPLQVEISDAVSERDKVKFTVQTKSGLPHFAQSEFSVVRQHEEFIWLHDTYVE 77
Query: 304 NEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVA 483
NE+YAG IIPPAPPRPDF+ASREKLQKLGEG S+T+EEF+KMKQELEAEYLAIFKKTVA
Sbjct: 78 NEEYAGLIIPPAPPRPDFEASREKLQKLGEGNSSITREEFSKMKQELEAEYLAIFKKTVA 137
Query: 484 MHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVI--- 654
MHEVFL R+AAHP LR+D NF VFLEY+QDLSVR KN+KE L +++V+SAD V+
Sbjct: 138 MHEVFLQRLAAHPTLRRDHNFSVFLEYSQDLSVREKNRKEVLGGLLRSIVRSADEVLITG 197
Query: 655 VSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQD 834
+SG+K+VDDFFEHERTFL+EYH R++D ++DR+ SHK AD+Y I ++L +LGTQ+
Sbjct: 198 ISGLKEVDDFFEHERTFLVEYHTRIRDTCQRADRVMHSHKCLADNYIPISAALSSLGTQE 257
Query: 835 STDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
+ + FLK++ELF++ RK+E RV++DEDLKLSD+L
Sbjct: 258 VNQLKRSFLKLAELFERLRKLEGRVASDEDLKLSDML 294
Score = 48.5 bits (114), Expect(2) = e-115
Identities = 24/37 (64%), Positives = 28/37 (75%)
Frame = +2
Query: 953 LKRSQAAKDLLYRRSRSLVDYENANKALG*RRAKKLE 1063
++ SQAAKDLLYRR R+L DYENANKAL R + E
Sbjct: 298 MRDSQAAKDLLYRRLRALADYENANKALDKARTRNRE 334
>ref|NP_062701.2| sorting nexin-1 [Mus musculus].
Length = 521
Score = 66.6 bits (161), Expect = 3e-11
Identities = 62/284 (21%), Positives = 127/284 (44%), Gaps = 11/284 (3%)
Frame = +1
Query: 130 DLQSDAALQVDISDALSERDK--------VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWL 285
+L+ + Q D++ +++ +K V + V T++SLP F+ +F+V R+ +F+ L
Sbjct: 133 ELEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQFAVKRRFSDFLGL 192
Query: 286 HDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAI 465
++ E G+I+PP P + ++ K+ K E S + E K + LE
Sbjct: 193 YEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGK----EDSSSAEFLEKRRAALER----- 243
Query: 466 FKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSAD 645
+L R+ HP + +D + FLE ++L + K K+ D
Sbjct: 244 ----------YLQRIVNHPTMLQDPDVREFLE-KEELPRAVGTQALSGAGLLKMFNKATD 292
Query: 646 GVIVSGVK--DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYA 819
V +K + D +FE + + R++ A + + K A + SL
Sbjct: 293 AVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAM 352
Query: 820 LG-TQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
LG ++D+T + + +++E+ +K ++ + ++ L++LL+
Sbjct: 353 LGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLS 396
>ref|NP_080662.1| sorting nexin-2 [Mus musculus].
Length = 519
Score = 65.5 bits (158), Expect = 7e-11
Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 11/274 (4%)
Frame = +1
Query: 160 DISDALSERDKV--------KFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDY 315
DI +S+ +KV + V TK+SL F ++EFSV R+ +F+ LH +
Sbjct: 141 DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 200
Query: 316 AGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEV 495
GYI+PPAP + ++ K+ K E S + E K + LE
Sbjct: 201 VGYIVPPAPEKSIVGMTKVKVGK----EDSSSTEFVEKRRAALER--------------- 241
Query: 496 FLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK-- 669
+L R HP L +D + FLE + +L + + + K+AD V +K
Sbjct: 242 YLQRTVKHPTLLQDPDLRQFLE-SSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMN 300
Query: 670 DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDSTDI 846
+ D +FE ++ +++ A + + K + + S LG ++D T +
Sbjct: 301 ESDAWFEEKQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTAL 360
Query: 847 CKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
+ +++E+ +K ++ + + S+LL+
Sbjct: 361 SRALSQLAEVEEKIDQLHQEQAFADFYMFSELLS 394
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,604,596
Number of extensions: 580251
Number of successful extensions: 1980
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1966
Number of HSP's successfully gapped: 13
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013353
(1104 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689419.2| sorting nexin-6 isoform b [Homo sapiens]. 588 e-172
Alignment gi|NP_689973.2| sorting nexin-32 [Homo sapiens]. 398 e-119
Alignment gi|NP_689413.1| sorting nexin-5 [Homo sapiens]. 390 e-115
Alignment gi|NP_055241.1| sorting nexin-5 [Homo sapiens]. 390 e-115
Alignment gi|NP_067072.3| sorting nexin-6 isoform a [Homo sapiens]. 356 e-103
Alignment gi|NP_001229862.1| sorting nexin-1 isoform d [Homo sapiens]. 66 7e-11
Alignment gi|NP_003090.2| sorting nexin-1 isoform a [Homo sapiens]. 66 7e-11
Alignment gi|NP_683758.1| sorting nexin-1 isoform b [Homo sapiens]. 65 9e-11
Alignment gi|NP_003091.2| sorting nexin-2 [Homo sapiens]. 65 1e-10
>ref|NP_689419.2| sorting nexin-6 isoform b [Homo sapiens].
Length = 418
Score = 588 bits (1515), Expect(2) = e-172
Identities = 294/296 (99%), Positives = 296/296 (100%)
Frame = +1
Query: 58 MMEGLDDGPDFLSDEDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFK 237
MMEGLDDGPDFLS+EDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFK
Sbjct: 13 MMEGLDDGPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFK 72
Query: 238 QNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKE 417
QNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKE
Sbjct: 73 QNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKE 132
Query: 418 EFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNK 597
EFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILR+DLNFHVFLEYNQDLSVRGKNK
Sbjct: 133 EFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVRGKNK 192
Query: 598 KEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKS 777
KEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKS
Sbjct: 193 KEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKS 252
Query: 778 AADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
AADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL
Sbjct: 253 AADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 308
Score = 38.5 bits (88), Expect(2) = e-172
Identities = 29/59 (49%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +3
Query: 945 KYYLR------DLKLLRISSIEDLGH*WIMKMLIKHWDKEERKNWKDVLQAETSQQLCC 1103
KYYLR DL R S+ D + K DK KN KDVLQAETSQQLCC
Sbjct: 309 KYYLRESQAAKDLLYRRSRSLVDYEN------ANKALDKARAKN-KDVLQAETSQQLCC 360
Score = 58.9 bits (141), Expect = 8e-09
Identities = 37/70 (52%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = +2
Query: 854 FFLKFQNCLTKQEK*KHECQL---MRTSNFLTF*ILLKRSQAAKDLLYRRSRSLVDYENA 1024
FFLK K K + ++ S+ L + L+ SQAAKDLLYRRSRSLVDYENA
Sbjct: 278 FFLKVSELFDKTRKIEARVSADEDLKLSDLLKY--YLRESQAAKDLLYRRSRSLVDYENA 335
Query: 1025 NKALG*RRAK 1054
NKAL RAK
Sbjct: 336 NKALDKARAK 345
>ref|NP_689973.2| sorting nexin-32 [Homo sapiens].
Length = 403
Score = 398 bits (1023), Expect(2) = e-119
Identities = 196/277 (70%), Positives = 237/277 (85%), Gaps = 3/277 (1%)
Frame = +1
Query: 124 NVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVE 303
+VDLQ D++LQV+ISDA+SERDKVKFTV TKS LP+F Q EFSVVRQHEEFIWLHD++VE
Sbjct: 17 SVDLQGDSSLQVEISDAVSERDKVKFTVQTKSCLPHFAQTEFSVVRQHEEFIWLHDAYVE 76
Query: 304 NEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVA 483
NE+YAG IIPPAPPRPDF+ASREKLQKLGEG+ S+T+EEF KMKQELEAEYLAIFKKTVA
Sbjct: 77 NEEYAGLIIPPAPPRPDFEASREKLQKLGEGDSSVTREEFAKMKQELEAEYLAIFKKTVA 136
Query: 484 MHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIV-- 657
MHEVFL R+AAHP LR+D NF VFLEY QDLSVRGKN+KE L F +N+VKSAD ++
Sbjct: 137 MHEVFLQRLAAHPTLRRDHNFFVFLEYGQDLSVRGKNRKELLGGFLRNIVKSADEALITG 196
Query: 658 -SGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQD 834
SG+K+VDDFFEHERTFLLEYH R++DA ++DR+ R+HK ADDY I ++L +LGTQ+
Sbjct: 197 MSGLKEVDDFFEHERTFLLEYHTRIRDACLRADRVMRAHKCLADDYIPISAALSSLGTQE 256
Query: 835 STDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
+ FLK++ELF++ RK+E RV++DEDLKLSD+L
Sbjct: 257 VNQLRTSFLKLAELFERLRKLEGRVASDEDLKLSDML 293
Score = 48.5 bits (114), Expect(2) = e-119
Identities = 24/37 (64%), Positives = 28/37 (75%)
Frame = +2
Query: 953 LKRSQAAKDLLYRRSRSLVDYENANKALG*RRAKKLE 1063
++ SQAAKDLLYRR R+L DYENANKAL R + E
Sbjct: 297 MRDSQAAKDLLYRRLRALADYENANKALDKARTRNRE 333
>ref|NP_689413.1| sorting nexin-5 [Homo sapiens].
Length = 404
Score = 390 bits (1003), Expect(3) = e-115
Identities = 187/284 (65%), Positives = 235/284 (82%), Gaps = 1/284 (0%)
Frame = +1
Query: 97 DEDRG-LKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEE 273
+EDR L++++VDL D +LQ+DI DALSERDKVKFTVHTK++LP F+ EFSV RQHE+
Sbjct: 12 EEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHED 71
Query: 274 FIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAE 453
F+WLHD+ +E DYAG IIPPAP +PDFD REK+QKLGEGEGSMTKEEF KMKQELEAE
Sbjct: 72 FVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAE 131
Query: 454 YLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMV 633
YLA+FKKTV+ HEVFL R+++HP+L KD NFHVFLEY+QDLSVR KN KE FFK++V
Sbjct: 132 YLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVV 191
Query: 634 KSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSL 813
KSAD V+ +GVK+VDDFFE E+ FL+ Y+NR+KD+ K+D+MTRSHK+ ADDY + L
Sbjct: 192 KSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHTAACL 251
Query: 814 YALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
++L ++ T I K+ LKV+ELF+K RK+E RVS+DEDLKL++LL
Sbjct: 252 HSLALEEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELL 295
Score = 44.7 bits (104), Expect(3) = e-115
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +2
Query: 965 QAAKDLLYRRSRSLVDYENANKALG*RRAK 1054
+AAKDLLYRR+++L+DYEN+NKAL R K
Sbjct: 303 EAAKDLLYRRTKALIDYENSNKALDKARLK 332
Score = 22.7 bits (47), Expect(3) = e-115
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 1029 KHWDKEERKNWKDVLQAETSQQLCC 1103
K DK K+ KDV AE QQ CC
Sbjct: 324 KALDKARLKS-KDVKLAEAHQQECC 347
>ref|NP_055241.1| sorting nexin-5 [Homo sapiens].
Length = 404
Score = 390 bits (1003), Expect(3) = e-115
Identities = 187/284 (65%), Positives = 235/284 (82%), Gaps = 1/284 (0%)
Frame = +1
Query: 97 DEDRG-LKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEE 273
+EDR L++++VDL D +LQ+DI DALSERDKVKFTVHTK++LP F+ EFSV RQHE+
Sbjct: 12 EEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHED 71
Query: 274 FIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAE 453
F+WLHD+ +E DYAG IIPPAP +PDFD REK+QKLGEGEGSMTKEEF KMKQELEAE
Sbjct: 72 FVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAE 131
Query: 454 YLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMV 633
YLA+FKKTV+ HEVFL R+++HP+L KD NFHVFLEY+QDLSVR KN KE FFK++V
Sbjct: 132 YLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVV 191
Query: 634 KSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSL 813
KSAD V+ +GVK+VDDFFE E+ FL+ Y+NR+KD+ K+D+MTRSHK+ ADDY + L
Sbjct: 192 KSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHTAACL 251
Query: 814 YALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
++L ++ T I K+ LKV+ELF+K RK+E RVS+DEDLKL++LL
Sbjct: 252 HSLALEEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELL 295
Score = 44.7 bits (104), Expect(3) = e-115
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +2
Query: 965 QAAKDLLYRRSRSLVDYENANKALG*RRAK 1054
+AAKDLLYRR+++L+DYEN+NKAL R K
Sbjct: 303 EAAKDLLYRRTKALIDYENSNKALDKARLK 332
Score = 22.7 bits (47), Expect(3) = e-115
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 1029 KHWDKEERKNWKDVLQAETSQQLCC 1103
K DK K+ KDV AE QQ CC
Sbjct: 324 KALDKARLKS-KDVKLAEAHQQECC 347
>ref|NP_067072.3| sorting nexin-6 isoform a [Homo sapiens].
Length = 290
Score = 356 bits (913), Expect(2) = e-103
Identities = 179/180 (99%), Positives = 180/180 (100%)
Frame = +1
Query: 406 MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVR 585
MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILR+DLNFHVFLEYNQDLSVR
Sbjct: 1 MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR 60
Query: 586 GKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR 765
GKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR
Sbjct: 61 GKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR 120
Query: 766 SHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 945
SHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL
Sbjct: 121 SHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 180
Score = 38.5 bits (88), Expect(2) = e-103
Identities = 29/59 (49%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +3
Query: 945 KYYLR------DLKLLRISSIEDLGH*WIMKMLIKHWDKEERKNWKDVLQAETSQQLCC 1103
KYYLR DL R S+ D + K DK KN KDVLQAETSQQLCC
Sbjct: 181 KYYLRESQAAKDLLYRRSRSLVDYEN------ANKALDKARAKN-KDVLQAETSQQLCC 232
Score = 58.9 bits (141), Expect = 8e-09
Identities = 37/70 (52%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = +2
Query: 854 FFLKFQNCLTKQEK*KHECQL---MRTSNFLTF*ILLKRSQAAKDLLYRRSRSLVDYENA 1024
FFLK K K + ++ S+ L + L+ SQAAKDLLYRRSRSLVDYENA
Sbjct: 150 FFLKVSELFDKTRKIEARVSADEDLKLSDLLKY--YLRESQAAKDLLYRRSRSLVDYENA 207
Query: 1025 NKALG*RRAK 1054
NKAL RAK
Sbjct: 208 NKALDKARAK 217
>ref|NP_001229862.1| sorting nexin-1 isoform d [Homo sapiens].
Length = 557
Score = 65.9 bits (159), Expect = 7e-11
Identities = 61/276 (22%), Positives = 124/276 (44%), Gaps = 11/276 (3%)
Frame = +1
Query: 154 QVDISDALSERDK--------VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENE 309
Q D++ +++ +K V + V T++SLP F+ +F+V R+ +F+ L++ E
Sbjct: 142 QFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKH 201
Query: 310 DYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMH 489
G+I+PP P + ++ K+ K E S + E K + LE
Sbjct: 202 SQNGFIVPPPPEKSLIGMTKVKVGK----EDSSSAEFLEKRRAALER------------- 244
Query: 490 EVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK 669
+L R+ HP + +D + FLE ++L + K K+ D V +K
Sbjct: 245 --YLQRIVNHPTMLQDPDVREFLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIK 301
Query: 670 --DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDST 840
+ D +FE + + R++ A + + K A + + SL LG ++D+T
Sbjct: 302 MNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNT 361
Query: 841 DICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
+ + +++E+ +K ++ + ++ L++LL+
Sbjct: 362 ALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLS 397
>ref|NP_003090.2| sorting nexin-1 isoform a [Homo sapiens].
Length = 522
Score = 65.9 bits (159), Expect = 7e-11
Identities = 61/276 (22%), Positives = 124/276 (44%), Gaps = 11/276 (3%)
Frame = +1
Query: 154 QVDISDALSERDK--------VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENE 309
Q D++ +++ +K V + V T++SLP F+ +F+V R+ +F+ L++ E
Sbjct: 142 QFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKH 201
Query: 310 DYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMH 489
G+I+PP P + ++ K+ K E S + E K + LE
Sbjct: 202 SQNGFIVPPPPEKSLIGMTKVKVGK----EDSSSAEFLEKRRAALER------------- 244
Query: 490 EVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK 669
+L R+ HP + +D + FLE ++L + K K+ D V +K
Sbjct: 245 --YLQRIVNHPTMLQDPDVREFLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIK 301
Query: 670 --DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDST 840
+ D +FE + + R++ A + + K A + + SL LG ++D+T
Sbjct: 302 MNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNT 361
Query: 841 DICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
+ + +++E+ +K ++ + ++ L++LL+
Sbjct: 362 ALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLS 397
>ref|NP_683758.1| sorting nexin-1 isoform b [Homo sapiens].
Length = 457
Score = 65.5 bits (158), Expect = 9e-11
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 3/255 (1%)
Frame = +1
Query: 193 VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASRE 372
V + V T++SLP F+ +F+V R+ +F+ L++ E G+I+PP P + ++
Sbjct: 98 VAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 157
Query: 373 KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHV 552
K+ K E S + E K + LE +L R+ HP + +D +
Sbjct: 158 KVGK----EDSSSAEFLEKRRAALER---------------YLQRIVNHPTMLQDPDVRE 198
Query: 553 FLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK--DVDDFFEHERTFLLEYHNR 726
FLE ++L + K K+ D V +K + D +FE + + R
Sbjct: 199 FLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQR 257
Query: 727 VKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDSTDICKFFLKVSELFDKTRKIEA 903
++ A + + K A + + SL LG ++D+T + + +++E+ +K ++
Sbjct: 258 LRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQ 317
Query: 904 RVSADEDLKLSDLLN 948
+ ++ L++LL+
Sbjct: 318 EQANNDFFLLAELLS 332
>ref|NP_003091.2| sorting nexin-2 [Homo sapiens].
Length = 519
Score = 64.7 bits (156), Expect = 1e-10
Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 11/293 (3%)
Frame = +1
Query: 103 DRGLKAINVDLQSDAALQVDISDALSERDKV--------KFTVHTKSSLPNFKQNEFSVV 258
DR + I + D DI +S+ +KV + V TK+SL F ++EFSV
Sbjct: 125 DRSREEIEEEANGDI---FDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVK 181
Query: 259 RQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQ 438
R+ +F+ LH + GYI+PPAP + ++ K+ K E S + E K +
Sbjct: 182 RRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGK----EDSSSTEFVEKRRA 237
Query: 439 ELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRGKNKKEKLEDF 618
LE +L R HP L +D + FLE + +L +
Sbjct: 238 ALER---------------YLQRTVKHPTLLQDPDLRQFLE-SSELPRAVNTQALSGAGI 281
Query: 619 FKNMVKSADGVIVSGVK--DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDY 792
+ + K+AD V +K + D +FE ++ +++ + + K + +
Sbjct: 282 LRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANT 341
Query: 793 NRIGSSLYALG-TQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLN 948
S LG ++D T + + +++E+ +K ++ + + S+LL+
Sbjct: 342 AAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLS 394
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,099,242
Number of extensions: 670240
Number of successful extensions: 2296
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2280
Number of HSP's successfully gapped: 18
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013353
(1104 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 186 2e-44
>Sscrofa_Chr07
|| Length = 134764511
Score = 186 bits (94), Expect = 2e-44
Identities = 124/131 (94%), Gaps = 6/131 (4%)
Strand = Plus / Plus
Query: 975 aggatctcctctatcgaagatctaggtcactagtggattatgaaaatgctaataaagcac 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69988387 aggatctcctctatcgaagatctaggtcactagtggattatgaaaatgctaataaagcac 69988446
Query: 1035 tgggataaag-aagagcgaaaaaactggaaagatgttctgcaggctgaaacatcccaaca 1093
| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 69988447 t-ggataaagcaagagcgaaaaa----taaagatgttctgcaggctgaaacatcccaaca 69988501
Query: 1094 attatgttgtc 1104
|||||||||||
Sbjct: 69988502 attatgttgtc 69988512
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,745,166
Number of extensions: 330
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 2
Length of query: 1104
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1083
Effective length of database: 2,808,413,156
Effective search space: 3041511447948
Effective search space used: 3041511447948
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)