Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013357
(968 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030467.1| NADPH--cytochrome P450 reductase [Bos taurus]. 498 e-141
Alignment gi|NP_001179682.1| tRNA wybutosine-synthesizing protein 1 homol... 93 3e-19
Alignment gi|XP_002698155.1| PREDICTED: tRNA-yW synthesizing protein 1 ho... 93 3e-19
Alignment gi|NP_001025470.1| methionine synthase reductase [Bos taurus]. 80 3e-15
Alignment gi|XP_002694631.1| PREDICTED: nitric oxide synthase 1 (neuronal... 79 6e-15
Alignment gi|NP_001039623.2| NADPH-dependent diflavin oxidoreductase 1 [B... 76 5e-14
Alignment gi|NP_851380.2| nitric oxide synthase, endothelial [Bos taurus]. 65 7e-11
Alignment gi|XP_872723.2| PREDICTED: nitric oxide synthase 1, neuronal is... 64 2e-10
Alignment gi|NP_001070267.1| nitric oxide synthase, inducible [Bos taurus]. 59 8e-09
>ref|NP_001030467.1| NADPH--cytochrome P450 reductase [Bos taurus].
Length = 680
Score = 498 bits (1283), Expect = e-141
Identities = 242/278 (87%), Positives = 255/278 (91%)
Frame = +3
Query: 135 ISMGDSNVDTGTTTSEMVAEEVSLFSATDMVLFSLIVGLLTYWFIFRKKKDEVPEFTKIE 314
++M DSN+D GTTTSEMVAEEVSLFS TD++LFSLIVG++TYWF+FRKKK+EVPEFTKI+
Sbjct: 1 MNMADSNMDAGTTTSEMVAEEVSLFSTTDVILFSLIVGVMTYWFLFRKKKEEVPEFTKIQ 60
Query: 315 TTTSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYD 494
TTTSSVKD SFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYD
Sbjct: 61 TTTSSVKDRSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYD 120
Query: 495 LSDLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDWLQEADVDLSGVKYAVFGLGNKTY 674
L+DLSSLPEIE ALA+FCMATYGEGDPTDNAQDFYDWLQE DVDLSGVKYAVF LGNKTY
Sbjct: 121 LADLSSLPEIEKALAIFCMATYGEGDPTDNAQDFYDWLQETDVDLSGVKYAVFALGNKTY 180
Query: 675 EHFNAMGKYVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGVEATGE 854
EHFNAMGKYVDKRLEQLGAQRIF FITWREQFWPAVCEHFGVEATGE
Sbjct: 181 EHFNAMGKYVDKRLEQLGAQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVEATGE 240
Query: 855 ESSIRQYELVVHTDMDTAVVYTGEMGRLKSYENQKPPF 968
ESSIRQYEL+VHTDMD A VYTGEMGRLKSYENQKPPF
Sbjct: 241 ESSIRQYELMVHTDMDMAKVYTGEMGRLKSYENQKPPF 278
>ref|NP_001179682.1| tRNA wybutosine-synthesizing protein 1 homolog [Bos taurus].
Length = 731
Score = 93.2 bits (230), Expect = 3e-19
Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 10/173 (5%)
Frame = +3
Query: 252 LTYWFIFRKKKDEVPEFTKIETTTSSVKDSSFVEKMKKTG--RNIIVFYGSQTGTAEEFA 425
+ + + RK+ PE T + + ++ + ++ + KK + +FYGSQTGTA+ FA
Sbjct: 36 ICFQIVIRKQNKNSPEKTTPKAS-QNLMTNGYISRPKKEVFVSGVKIFYGSQTGTAKGFA 94
Query: 426 NRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDW 605
L++ + + ++YD D + F +ATY +G P ++A F W
Sbjct: 95 TILAEALSSLNLPVAMINLKDYDPDDRLIEEVTSKNVCAFLVATYTDGQPPESAAWFCKW 154
Query: 606 LQEADVD-------LSGVKYAVFGLGNKTY-EHFNAMGKYVDKRLEQLGAQRI 740
L+EA D L G++YAVFGLGN Y HFN +GK VDK L LGA R+
Sbjct: 155 LEEAANDFRFGKTYLKGMRYAVFGLGNSVYLSHFNTVGKNVDKWLWMLGAHRV 207
>ref|XP_002698155.1| PREDICTED: tRNA-yW synthesizing protein 1 homolog [Bos taurus].
Length = 675
Score = 93.2 bits (230), Expect = 3e-19
Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 10/173 (5%)
Frame = +3
Query: 252 LTYWFIFRKKKDEVPEFTKIETTTSSVKDSSFVEKMKKTG--RNIIVFYGSQTGTAEEFA 425
+ + + RK+ PE T + + ++ + ++ + KK + +FYGSQTGTA+ FA
Sbjct: 36 ICFQIVIRKQNKNSPEKTTPKAS-QNLMTNGYISRPKKEVFVSGVKIFYGSQTGTAKGFA 94
Query: 426 NRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDW 605
L++ + + ++YD D + F +ATY +G P ++A F W
Sbjct: 95 TILAEALSSLNLPVAMINLKDYDPDDRLIEEVTSKNVCAFLVATYTDGQPPESAAWFCKW 154
Query: 606 LQEADVD-------LSGVKYAVFGLGNKTY-EHFNAMGKYVDKRLEQLGAQRI 740
L+EA D L G++YAVFGLGN Y HFN +GK VDK L LGA R+
Sbjct: 155 LEEAANDFRFGKTYLKGMRYAVFGLGNSVYLSHFNTVGKNVDKWLWMLGAHRV 207
>ref|NP_001025470.1| methionine synthase reductase [Bos taurus].
Length = 695
Score = 80.1 bits (196), Expect = 3e-15
Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 3/180 (1%)
Frame = +3
Query: 372 RNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCM 551
R ++ Y +Q G A+ A +S+ A YG E D DL + E A V +
Sbjct: 2 RRFLLLYATQRGQAKAIAEEISEKAVTYGFSADLHCISESDKYDLKT----ETAPLVMVV 57
Query: 552 ATYGEGDPTDNAQDFYDWLQEADVD---LSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQ 722
+T G GDP D A+ F +++ + L+ ++Y + GLG+ Y +F GK +DKRL++
Sbjct: 58 STTGNGDPPDTARKFVKAIKDKTLPPDFLAHLRYGLLGLGDSEYTYFCNGGKVIDKRLQE 117
Query: 723 LGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGVEATGEESSIRQYELVVHTDMD 902
LGAQR + W W A+ +HF + G E + + H D
Sbjct: 118 LGAQRFYDTGHADDCVGLELVVEPWINGLWAALEKHF-LSNRGREDTSETLTMASHASRD 176
>ref|XP_002694631.1| PREDICTED: nitric oxide synthase 1 (neuronal) [Bos taurus].
Length = 1232
Score = 79.0 bits (193), Expect = 6e-15
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Frame = +3
Query: 384 VFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCMATYG 563
+ Y ++TG ++ +A L + ++ EEYD+ L L + +T+G
Sbjct: 621 ILYATETGKSQAYAKTLC-EIFKHAFDAKVMSMEEYDIVHLE-----HETLVLVVTSTFG 674
Query: 564 EGDPTDNAQDFYDWLQEA--DVDLSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQR 737
GDP +N ++ L + + + G K++VFGLG++ Y HF A G VD LE+LG +R
Sbjct: 675 NGDPPENGEELKSLLMKVKEESEKVGFKFSVFGLGSRAYPHFCAFGHAVDTLLEELGGER 734
Query: 738 IFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGV 839
I F TW ++ + A C+ F V
Sbjct: 735 ILKMREGDELCGQEEAFRTWAKKVFKAACDVFCV 768
>ref|NP_001039623.2| NADPH-dependent diflavin oxidoreductase 1 [Bos taurus].
Length = 597
Score = 75.9 bits (185), Expect = 5e-14
Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Frame = +3
Query: 378 IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCMAT 557
++V +GSQTGTA++ + RL ++A R R ++ EE D + +L I L +F AT
Sbjct: 6 LLVLFGSQTGTAQDVSERLGREARR---RQLSCRVEELDSYPVVNL--INEPLVIFVCAT 60
Query: 558 YGEGDPTDNAQDFYDWLQEADVDLSGVK---YAVFGLGNKTYEHFNAMGKYVDKRLEQLG 728
G+GDP DN + F+ ++ + + ++ +AV GLG+ +Y FN + K + +RL QLG
Sbjct: 61 TGQGDPPDNMKSFWRFIFRRSLPSTALRQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQLG 120
Query: 729 AQRI 740
+
Sbjct: 121 GSAL 124
>ref|NP_851380.2| nitric oxide synthase, endothelial [Bos taurus].
Length = 1205
Score = 65.5 bits (158), Expect = 7e-11
Identities = 65/249 (26%), Positives = 101/249 (40%), Gaps = 51/249 (20%)
Frame = +3
Query: 267 IFRKKK-DEVPEFTKIETTTSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKD 443
I RKK EV KI ++S+ + +++K T + Y S+TG A+ +A +L +
Sbjct: 492 ITRKKTFKEVANAVKI---SASLMGTLMAKRVKAT-----ILYASETGRAQSYAQQLGRL 543
Query: 444 AHRYGMRGMAADP-----EEYDLSDLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDWL 608
+ A DP +EYD+ L AL + +T+G GDP +N + F L
Sbjct: 544 FRK------AFDPRVLCMDEYDVVSLE-----HEALVLVVTSTFGNGDPPENGESFAAAL 592
Query: 609 QE-----------------------------------------ADVDLSG----VKYAVF 653
E ++ D +G +++ VF
Sbjct: 593 MEMSGPYNSSPRPEQHKSYKIRFNSVSCSDPLVSSWRRKRKESSNTDSAGALGTLRFCVF 652
Query: 654 GLGNKTYEHFNAMGKYVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHF 833
GLG++ Y HF A + VD RLE+LG +R+ F W + + A CE F
Sbjct: 653 GLGSRAYPHFCAFARAVDTRLEELGGERLLQLGQGDELCGQEEAFRGWAKAAFQASCETF 712
Query: 834 GVEATGEES 860
V GEE+
Sbjct: 713 CV---GEEA 718
>ref|XP_872723.2| PREDICTED: nitric oxide synthase 1, neuronal isoform 2 [Bos taurus].
Length = 1430
Score = 63.9 bits (154), Expect = 2e-10
Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 42/194 (21%)
Frame = +3
Query: 384 VFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCMATYG 563
+ Y ++TG ++ +A L + ++ EEYD+ L L + +T+G
Sbjct: 762 ILYATETGKSQAYAKTLC-EIFKHAFDAKVMSMEEYDIVHLE-----HETLVLVVTSTFG 815
Query: 564 EGDPTDNAQDFYDWLQE------------------------------------------A 617
GDP +N + F L E +
Sbjct: 816 NGDPPENGEKFGCALMEMRNPNSVHEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFES 875
Query: 618 DVDLSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITW 797
L+ V+++VFGLG++ Y HF A G VD LE+LG +RI F TW
Sbjct: 876 TGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCGQEEAFRTW 935
Query: 798 REQFWPAVCEHFGV 839
++ + A C+ F V
Sbjct: 936 AKKVFKAACDVFCV 949
>ref|NP_001070267.1| nitric oxide synthase, inducible [Bos taurus].
Length = 1156
Score = 58.5 bits (140), Expect = 8e-09
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 5/157 (3%)
Frame = +3
Query: 384 VFYGSQTGTAEEFANRLSKDAHRYGMRGMAADP-----EEYDLSDLSSLPEIENALAVFC 548
+ + ++TG +E A L + A +P ++Y LS L E L +
Sbjct: 541 ILFATETGRSETLAQDLG------ALFSCAFNPKVLCMDQYQLSHLE-----EEQLLLVV 589
Query: 549 MATYGEGDPTDNAQDFYDWLQEADVDLSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQLG 728
+T+G GD N + L + +YAVFGLG+ Y F A +D++L QLG
Sbjct: 590 TSTFGNGDSPGNGEKLKKSLLMLKELTNTFRYAVFGLGSSMYPQFCAFAHDIDQKLSQLG 649
Query: 729 AQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGV 839
A ++ F +W Q + A CE F V
Sbjct: 650 ASQLAPTGEGDELSGQEEAFRSWAVQTFKAACETFDV 686
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,562,265
Number of extensions: 971281
Number of successful extensions: 4244
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4222
Number of HSP's successfully gapped: 9
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013357
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013357
(968 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171276.1| NADPH--cytochrome P450 reductase [Canis lupu... 483 e-136
Alignment gi|XP_536836.2| PREDICTED: similar to radical S-adenosyl methio... 94 3e-19
Alignment gi|XP_548355.2| PREDICTED: similar to NADPH dependent diflavin ... 75 9e-14
Alignment gi|XP_535797.2| PREDICTED: similar to methionine synthase reduc... 74 3e-13
Alignment gi|NP_001182074.1| nitric oxide synthase, brain [Canis lupus fa... 64 3e-10
Alignment gi|NP_001003186.1| nitric oxide synthase, inducible [Canis lupu... 50 3e-06
>ref|NP_001171276.1| NADPH--cytochrome P450 reductase [Canis lupus familiaris].
Length = 678
Score = 483 bits (1242), Expect = e-136
Identities = 236/276 (85%), Positives = 245/276 (88%)
Frame = +3
Query: 141 MGDSNVDTGTTTSEMVAEEVSLFSATDMVLFSLIVGLLTYWFIFRKKKDEVPEFTKIETT 320
M DS++D T SE V EEVSLFS TDM+LFSLIVGLLTYWF+FRKKKDE+PEFT I+
Sbjct: 1 MEDSSMDASATVSETVVEEVSLFSMTDMILFSLIVGLLTYWFLFRKKKDEIPEFTTIQPM 60
Query: 321 TSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLS 500
TSS KDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDL+
Sbjct: 61 TSSAKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLA 120
Query: 501 DLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDWLQEADVDLSGVKYAVFGLGNKTYEH 680
DL SLPEIEN+LAVFCMATYGEGDPTDNAQDFYDWLQE DVDLSGVKYAVFGLGNKTYEH
Sbjct: 121 DLGSLPEIENSLAVFCMATYGEGDPTDNAQDFYDWLQETDVDLSGVKYAVFGLGNKTYEH 180
Query: 681 FNAMGKYVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGVEATGEES 860
FNAMGKYVDKRLEQLGAQRIF FITWREQFWPAVCEHFGVEATGEES
Sbjct: 181 FNAMGKYVDKRLEQLGAQRIFELGMGDDDGNLEEDFITWREQFWPAVCEHFGVEATGEES 240
Query: 861 SIRQYELVVHTDMDTAVVYTGEMGRLKSYENQKPPF 968
SIRQYELVVHTD+D A VY GEMGRLKSYENQKPPF
Sbjct: 241 SIRQYELVVHTDIDMAKVYVGEMGRLKSYENQKPPF 276
>ref|XP_536836.2| PREDICTED: similar to radical S-adenosyl methionine and flavodoxin
domains 1 [Canis familiaris].
Length = 714
Score = 93.6 bits (231), Expect = 3e-19
Identities = 62/170 (36%), Positives = 87/170 (51%), Gaps = 11/170 (6%)
Frame = +3
Query: 264 FIFRKKKDE---VPEFTKIETTTSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRL 434
FI + KK + VP+ T T + ++ + + +FYGSQTGTA+ FA L
Sbjct: 47 FILKGKKSQEKSVPKATGDLMTNGCIS----LQNKEVFVSGVKIFYGSQTGTAKGFATSL 102
Query: 435 SKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDWLQE 614
++ + + +EYD D + F +ATY +G PT++A F WL+E
Sbjct: 103 AEAVTSLDLPVAVINLKEYDPDDQLVEEVTSKNVCAFVVATYTDGQPTESAVWFCKWLEE 162
Query: 615 ADVD-------LSGVKYAVFGLGNKTY-EHFNAMGKYVDKRLEQLGAQRI 740
A D L G++YAVFGLGN Y HFN +GK VDK L LGA R+
Sbjct: 163 ASSDFRFGKTYLKGMRYAVFGLGNSVYASHFNKVGKNVDKWLWMLGAHRV 212
>ref|XP_548355.2| PREDICTED: similar to NADPH dependent diflavin oxidoreductase 1
[Canis familiaris].
Length = 644
Score = 75.1 bits (183), Expect = 9e-14
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Frame = +3
Query: 378 IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCMAT 557
++V +GSQTGTA++ A RL +DA R + + Y + +L I L VF AT
Sbjct: 53 LLVLFGSQTGTAQDVAERLGRDARRRRLDCRVQALDSYSVVNL-----INEPLVVFVCAT 107
Query: 558 YGEGDPTDNAQDFYDWLQEADV---DLSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQLG 728
G+G+P DN ++F+ ++ ++ L + +AV GLG+ +Y FN + K + +RL QLG
Sbjct: 108 AGQGEPPDNMKNFWRFIFRKNLPSTSLCQMDFAVLGLGDSSYAKFNFVAKKLYRRLLQLG 167
Query: 729 AQRI 740
+
Sbjct: 168 GSAL 171
>ref|XP_535797.2| PREDICTED: similar to methionine synthase reductase isoform 2
[Canis familiaris].
Length = 697
Score = 73.6 bits (179), Expect = 3e-13
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 3/157 (1%)
Frame = +3
Query: 372 RNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCM 551
R ++ Y +Q G A+ A + + A +G E D DL + E A V +
Sbjct: 2 RRFLLLYATQKGQAKAIAEEICEKAFAHGFSADLHCISESDKYDLKT----ETAPLVVVV 57
Query: 552 ATYGEGDPTDNAQDFYDWLQEADVDL---SGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQ 722
+T G GDP D A+ F +Q+ + + + ++Y + GLG+ Y +F GK +DKRL++
Sbjct: 58 STTGTGDPPDTARKFVKEIQDKALPIDFFAHLRYGLLGLGDSEYTYFCNGGKIIDKRLQE 117
Query: 723 LGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHF 833
LGAQ + W W A+ +HF
Sbjct: 118 LGAQHFYDTGHADDCVGLELVVEPWINGLWAALTKHF 154
>ref|NP_001182074.1| nitric oxide synthase, brain [Canis lupus familiaris].
Length = 1431
Score = 63.5 bits (153), Expect = 3e-10
Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 42/194 (21%)
Frame = +3
Query: 384 VFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCMATYG 563
+ Y ++TG ++ +A L + ++ EEYD+ L L + +T+G
Sbjct: 759 ILYATETGKSQAYAKTLC-EIFKHAFDAKVMSMEEYDIVHLE-----HETLVLVVTSTFG 812
Query: 564 EGDPTDNAQDFYDWLQE------------------------------------------A 617
GDP +N + F L E +
Sbjct: 813 NGDPPENGEKFGCALMEMRHPNSVHEERKSYKVRFNSVSSYSDSHKSSGDGPDLRDNFES 872
Query: 618 DVDLSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITW 797
L+ V+++VFGLG++ Y HF A G VD LE+LG +RI F TW
Sbjct: 873 AGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCGQEEAFRTW 932
Query: 798 REQFWPAVCEHFGV 839
++ + A C+ F V
Sbjct: 933 AKKVFKAACDVFCV 946
>ref|NP_001003186.1| nitric oxide synthase, inducible [Canis lupus familiaris].
Length = 1154
Score = 50.1 bits (118), Expect = 3e-06
Identities = 39/163 (23%), Positives = 61/163 (37%)
Frame = +3
Query: 339 SSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLP 518
S + K + + + + ++TG +E A L +EY LS L
Sbjct: 523 SMLMRKTMASRVRVTILFATETGKSETLARDLGA-LFSCAFHPKVLCMDEYKLSHLE--- 578
Query: 519 EIENALAVFCMATYGEGDPTDNAQDFYDWLQEADVDLSGVKYAVFGLGNKTYEHFNAMGK 698
E L + +T+G GD N + L + +YAVFGL + Y F A
Sbjct: 579 --EEQLLLVVTSTFGNGDSPGNGEKLKKSLFMLKELTNNFRYAVFGLRSNMYPQFCAFAH 636
Query: 699 YVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCE 827
+D +L LGA ++ F W Q + A C+
Sbjct: 637 DIDHKLSHLGASQLTPGGEGDELNGKEEAFRCWAVQTFKAACD 679
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,258,323
Number of extensions: 1014449
Number of successful extensions: 4512
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4499
Number of HSP's successfully gapped: 6
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013357
(968 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123431.1| NADPH--cytochrome P450 reductase [Sus scrofa]. 527 e-150
Alignment gi|XP_003134196.1| PREDICTED: methionine synthase reductase [Su... 73 2e-13
Alignment gi|XP_003122396.1| PREDICTED: LOW QUALITY PROTEIN: NADPH-depend... 73 2e-13
Alignment gi|NP_999460.1| nitric oxide synthase, endothelial [Sus scrofa]. 58 9e-09
Alignment gi|XP_003358212.1| PREDICTED: nitric oxide synthase, inducible ... 51 8e-07
Alignment gi|NP_001137162.1| nitric oxide synthase, inducible [Sus scrofa]. 51 1e-06
>ref|NP_001123431.1| NADPH--cytochrome P450 reductase [Sus scrofa].
Length = 678
Score = 527 bits (1358), Expect = e-150
Identities = 262/276 (94%), Positives = 262/276 (94%)
Frame = +3
Query: 141 MGDSNVDTGTTTSEMVAEEVSLFSATDMVLFSLIVGLLTYWFIFRKKKDEVPEFTKIETT 320
MGDSNVDTGTTTSEMVAEEVSLFSATDMVLFSLIVGLLTYWFIFRKKKDEVPEFTKIETT
Sbjct: 1 MGDSNVDTGTTTSEMVAEEVSLFSATDMVLFSLIVGLLTYWFIFRKKKDEVPEFTKIETT 60
Query: 321 TSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLS 500
TSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLS
Sbjct: 61 TSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLS 120
Query: 501 DLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDWLQEADVDLSGVKYAVFGLGNKTYEH 680
DLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDWLQEADVDLSGVKYAVFGLGNKTYEH
Sbjct: 121 DLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDWLQEADVDLSGVKYAVFGLGNKTYEH 180
Query: 681 FNAMGKYVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGVEATGEES 860
FNAMGKYVDKRLEQLGAQRIF FITWREQFWPAVCEHFGVEATGEES
Sbjct: 181 FNAMGKYVDKRLEQLGAQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVEATGEES 240
Query: 861 SIRQYELVVHTDMDTAVVYTGEMGRLKSYENQKPPF 968
SIRQYELVVHTDMDTAVVYTGEMGRLKSYENQKPPF
Sbjct: 241 SIRQYELVVHTDMDTAVVYTGEMGRLKSYENQKPPF 276
>ref|XP_003134196.1| PREDICTED: methionine synthase reductase [Sus scrofa].
Length = 694
Score = 73.2 bits (178), Expect = 2e-13
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 3/157 (1%)
Frame = +3
Query: 372 RNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCM 551
R ++ Y +Q G A+ A + + A +G E D DL + E A V +
Sbjct: 2 RRFLLLYATQRGQAKAIAEEICEKADAHGFSADLHCISELDKYDLRT----EAAPLVVVV 57
Query: 552 ATYGEGDPTDNAQDFYDWLQEADVD---LSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQ 722
+T G GDP D A+ F +Q+ + L+ ++Y + GLG+ Y +F GK +DKRL++
Sbjct: 58 STTGNGDPPDTARKFVKAIQDKTLPGDLLAHLRYGLLGLGDSEYTYFCNGGKIIDKRLQE 117
Query: 723 LGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHF 833
LGAQ + W W A+ +HF
Sbjct: 118 LGAQHFYDTGHADDCVGLELVVEPWINGLWAALEKHF 154
>ref|XP_003122396.1| PREDICTED: LOW QUALITY PROTEIN: NADPH-dependent diflavin
oxidoreductase 1-like [Sus scrofa].
Length = 598
Score = 73.2 bits (178), Expect = 2e-13
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Frame = +3
Query: 378 IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCMAT 557
++V +GSQTGTA++ + RL ++A R + + Y + +L + P L +F AT
Sbjct: 6 LLVLFGSQTGTAQDVSERLGREARRRQLCCRVQALDSYPVVNLINEP-----LVIFVCAT 60
Query: 558 YGEGDPTDNAQDFYDWLQEADV---DLSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQLG 728
G+GDP DN + F+ ++ ++ L + +AV GLG+ +Y FN + K + +RL QLG
Sbjct: 61 TGQGDPPDNMKGFWKFIFRRNLPSTSLCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQLG 120
Query: 729 AQRI 740
+
Sbjct: 121 GSAL 124
>ref|NP_999460.1| nitric oxide synthase, endothelial [Sus scrofa].
Length = 1205
Score = 57.8 bits (138), Expect = 9e-09
Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 50/202 (24%)
Frame = +3
Query: 384 VFYGSQTGTAEEFANRLSKDAHRYGMRGMAADP-----EEYDLSDLSSLPEIENALAVFC 548
+ Y S+T A+ +A +L + + A DP +EYD+ L L +
Sbjct: 524 ILYASETVRAQSYAQQLGRLFRK------AFDPRVLCMDEYDVVSLE-----HETLVLVV 572
Query: 549 MATYGEGDPTDNAQDFYDWLQE-------------------------------------- 614
+T+G GDP +N + F L E
Sbjct: 573 TSTFGNGDPPENGESFAAALMEMSGPYNGSPRPEQHRSYKIRFNSVSCSDPLVSSWRRKR 632
Query: 615 ---ADVDLSG----VKYAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFXXXXXXXXXX 773
++ D +G +++ VFGLG++ Y HF A + VD RLE+LG +R+
Sbjct: 633 KESSNTDSAGALGTLRFCVFGLGSRAYPHFCAFARAVDTRLEELGGERLLQLGQGDELCG 692
Query: 774 XXXXFITWREQFWPAVCEHFGV 839
F W + + A CE F V
Sbjct: 693 QEEAFRGWAQAAFQASCETFCV 714
>ref|XP_003358212.1| PREDICTED: nitric oxide synthase, inducible [Sus scrofa].
Length = 758
Score = 51.2 bits (121), Expect = 8e-07
Identities = 42/157 (26%), Positives = 62/157 (39%), Gaps = 5/157 (3%)
Frame = +3
Query: 384 VFYGSQTGTAEEFANRLSKDAHRYGMRGMAADP-----EEYDLSDLSSLPEIENALAVFC 548
+ + ++TG +E A L + A +P +EY LS L E L +
Sbjct: 541 ILFATETGRSETLARDLG------ALFSCAFNPKVLCMDEYRLSRLE-----EEQLLLVV 589
Query: 549 MATYGEGDPTDNAQDFYDWLQEADVDLSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQLG 728
+T+G G N + L + +YAVFGLG+ Y F A VD++L LG
Sbjct: 590 TSTFGNGGSPGNGEKLKKSLFMLKELTNKFRYAVFGLGSSMYPQFCAFAHDVDQKLSHLG 649
Query: 729 AQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGV 839
A ++ F W Q + CE F V
Sbjct: 650 ASQLTPTGEGDELSGQEEAFRGWAVQTFKVACETFDV 686
>ref|NP_001137162.1| nitric oxide synthase, inducible [Sus scrofa].
Length = 1064
Score = 50.8 bits (120), Expect = 1e-06
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 5/157 (3%)
Frame = +3
Query: 384 VFYGSQTGTAEEFANRLSKDAHRYGMRGMAADP-----EEYDLSDLSSLPEIENALAVFC 548
+ + ++TG +E A L + A +P +EY LS L E L +
Sbjct: 448 ILFATETGRSETLARDLG------ALFSCAFNPKVLCMDEYRLSRLE-----EEQLLLVV 496
Query: 549 MATYGEGDPTDNAQDFYDWLQEADVDLSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQLG 728
+T+G G N + L + +YAVFGLG+ Y F A +D++L LG
Sbjct: 497 TSTFGNGGSPGNGEKLKKSLFMLKELTNKFRYAVFGLGSSMYPQFCAFAHDIDQKLSHLG 556
Query: 729 AQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGV 839
A ++ F W Q + CE F V
Sbjct: 557 ASQLTPTGEGDELSGQEEAFRGWAVQTFKVACETFDV 593
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,951,879
Number of extensions: 628834
Number of successful extensions: 2676
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2666
Number of HSP's successfully gapped: 6
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013357
(968 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032924.1| NADPH--cytochrome P450 reductase [Mus musculus]. 473 e-133
Alignment gi|NP_001015876.1| tRNA wybutosine-synthesizing protein 1 homol... 90 3e-18
Alignment gi|NP_849228.1| tRNA wybutosine-synthesizing protein 1 homolog ... 90 3e-18
Alignment gi|NP_001075945.1| NADPH-dependent diflavin oxidoreductase 1 [M... 76 4e-14
Alignment gi|NP_766068.1| methionine synthase reductase [Mus musculus]. 74 2e-13
Alignment gi|NP_032739.3| nitric oxide synthase, endothelial [Mus musculu... 68 1e-11
Alignment gi|NP_032738.1| nitric oxide synthase, brain [Mus musculus]. 67 2e-11
Alignment gi|NP_035057.1| nitric oxide synthase, inducible [Mus musculus]. 57 2e-08
>ref|NP_032924.1| NADPH--cytochrome P450 reductase [Mus musculus].
Length = 678
Score = 473 bits (1217), Expect = e-133
Identities = 230/276 (83%), Positives = 246/276 (89%)
Frame = +3
Query: 141 MGDSNVDTGTTTSEMVAEEVSLFSATDMVLFSLIVGLLTYWFIFRKKKDEVPEFTKIETT 320
MGDS+ DT T E VAEEVSLFS TD+VLFSLIVG+LTYWFIF+KKK+E+PEF+KI+TT
Sbjct: 1 MGDSHEDTSATVPEAVAEEVSLFSTTDIVLFSLIVGVLTYWFIFKKKKEEIPEFSKIQTT 60
Query: 321 TSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLS 500
VK+SSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGM+ADPEEYDL+
Sbjct: 61 APPVKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLA 120
Query: 501 DLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDWLQEADVDLSGVKYAVFGLGNKTYEH 680
DLSSLPEI+ +L VFCMATYGEGDPTDNAQDFYDWLQE DVDL+GVK+AVFGLGNKTYEH
Sbjct: 121 DLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEH 180
Query: 681 FNAMGKYVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGVEATGEES 860
FNAMGKYVD+RLEQLGAQRIF FITWREQFWPAVCE FGVEATGEES
Sbjct: 181 FNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEATGEES 240
Query: 861 SIRQYELVVHTDMDTAVVYTGEMGRLKSYENQKPPF 968
SIRQYELVVH DMDTA VYTGEMGRLKSYENQKPPF
Sbjct: 241 SIRQYELVVHEDMDTAKVYTGEMGRLKSYENQKPPF 276
>ref|NP_001015876.1| tRNA wybutosine-synthesizing protein 1 homolog isoform 1 [Mus
musculus].
Length = 721
Score = 89.7 bits (221), Expect = 3e-18
Identities = 61/153 (39%), Positives = 84/153 (54%), Gaps = 10/153 (6%)
Frame = +3
Query: 312 ETTTSSVKDSSFVEKMKKTG-RNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEE 488
E DSS + K+T + +FYGSQTGTA+ FA L+K + + +E
Sbjct: 48 EKRVPGAPDSSLSPQKKQTHVSGVKIFYGSQTGTAKGFAVVLAKAVTSLDLPVAIINLKE 107
Query: 489 YDLSDLSSLPEI-ENALAVFCMATYGEGDPTDNAQDFYDWLQEADVD-------LSGVKY 644
YD D S + EI + F +ATY +G PT++A+ F WL+E+ D L G++Y
Sbjct: 108 YDPDD-SLIGEITSKTVCAFLVATYTDGCPTESAEWFCKWLEESANDFRFGKTYLKGLRY 166
Query: 645 AVFGLGNKTY-EHFNAMGKYVDKRLEQLGAQRI 740
AVFGLG+ Y HFN + VDK L LGAQR+
Sbjct: 167 AVFGLGDSAYRSHFNKVSTNVDKWLWMLGAQRV 199
>ref|NP_849228.1| tRNA wybutosine-synthesizing protein 1 homolog isoform 2 [Mus
musculus].
Length = 454
Score = 89.7 bits (221), Expect = 3e-18
Identities = 61/153 (39%), Positives = 84/153 (54%), Gaps = 10/153 (6%)
Frame = +3
Query: 312 ETTTSSVKDSSFVEKMKKTG-RNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEE 488
E DSS + K+T + +FYGSQTGTA+ FA L+K + + +E
Sbjct: 48 EKRVPGAPDSSLSPQKKQTHVSGVKIFYGSQTGTAKGFAVVLAKAVTSLDLPVAIINLKE 107
Query: 489 YDLSDLSSLPEI-ENALAVFCMATYGEGDPTDNAQDFYDWLQEADVD-------LSGVKY 644
YD D S + EI + F +ATY +G PT++A+ F WL+E+ D L G++Y
Sbjct: 108 YDPDD-SLIGEITSKTVCAFLVATYTDGCPTESAEWFCKWLEESANDFRFGKTYLKGLRY 166
Query: 645 AVFGLGNKTY-EHFNAMGKYVDKRLEQLGAQRI 740
AVFGLG+ Y HFN + VDK L LGAQR+
Sbjct: 167 AVFGLGDSAYRSHFNKVSTNVDKWLWMLGAQRV 199
>ref|NP_001075945.1| NADPH-dependent diflavin oxidoreductase 1 [Mus musculus].
Length = 598
Score = 75.9 bits (185), Expect = 4e-14
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Frame = +3
Query: 378 IIVFYGSQTGTAEEFANRLSKDA--HRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCM 551
++V +GSQTGTA++ A RL ++A R G R A D Y +++L I L +F
Sbjct: 6 LLVLFGSQTGTAQDEAERLGREARRRRLGCRVQALD--SYSVANL-----IREPLVIFVC 58
Query: 552 ATYGEGDPTDNAQDFYDWLQEADV---DLSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQ 722
AT G+GDP DN ++F+ ++ + L + +AV GLG+ +Y FN + K + +RL Q
Sbjct: 59 ATTGQGDPPDNMKNFWRFIFRKSLPSSSLCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQ 118
Query: 723 LGAQRI 740
LG +
Sbjct: 119 LGGSAL 124
>ref|NP_766068.1| methionine synthase reductase [Mus musculus].
Length = 696
Score = 73.9 bits (180), Expect = 2e-13
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Frame = +3
Query: 372 RNIIVFYGSQTGTAEEFANRLSKDAHRYGMRG---MAADPEEYDLSDLSSLPEIENALAV 542
R ++ Y +Q G A+ A +S+ A +G ++ E+YDL + E V
Sbjct: 2 RRFLLLYATQRGQAKAIAEEISEQAVSHGFSADLHCISESEKYDL-------KTETGPLV 54
Query: 543 FCMATYGEGDPTDNAQDFYDWLQEADVD---LSGVKYAVFGLGNKTYEHFNAMGKYVDKR 713
++T G GDP D A+ F + + + ++Y + GLG+ Y +F GK +DKR
Sbjct: 55 MVVSTTGTGDPPDTARKFVKEIHNKTLPTDYFAHLQYGLLGLGDSEYTYFCNGGKVIDKR 114
Query: 714 LEQLGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHF 833
L++LGAQR + W + W A+ +HF
Sbjct: 115 LQELGAQRFYDTGHADDCVGLELVVEPWIDGLWAALTKHF 154
>ref|NP_032739.3| nitric oxide synthase, endothelial [Mus musculus].
Length = 1202
Score = 67.8 bits (164), Expect = 1e-11
Identities = 63/242 (26%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Frame = +3
Query: 267 IFRKKK-DEVPEFTKIETTTSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKD 443
I RKK EV KI ++S+ + +++K T + YGS+TG A+ +A +L +
Sbjct: 489 ITRKKTFKEVANAVKI---SASLMGTVMAKRVKAT-----ILYGSETGRAQSYAQQLGRL 540
Query: 444 AHRYGMRGMAADP-----EEYDLSDLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDWL 608
+ A DP +EYD+ L AL + +T+G GDP +N + F L
Sbjct: 541 FRK------AFDPRVLCMDEYDVVSLE-----HEALVLVVTSTFGNGDPPENGESFAAAL 589
Query: 609 QE-----------------------------------------ADVDLSG----VKYAVF 653
E ++ D +G +++ VF
Sbjct: 590 MEMSGPYNSSPRPEQHKSYKIRFNSVSCSDPLVSSWRRKRKESSNTDSAGALGTLRFCVF 649
Query: 654 GLGNKTYEHFNAMGKYVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHF 833
GLG++ Y HF A + VD RLE+LG +R+ F W + + A CE F
Sbjct: 650 GLGSRAYPHFCAFARAVDTRLEELGGERLLQLGQGDELCGQEEAFRGWAQAAFQAACETF 709
Query: 834 GV 839
V
Sbjct: 710 CV 711
>ref|NP_032738.1| nitric oxide synthase, brain [Mus musculus].
Length = 1429
Score = 67.0 bits (162), Expect = 2e-11
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 42/194 (21%)
Frame = +3
Query: 384 VFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCMATYG 563
+ Y ++TG ++ +A L + ++ A EEYD+ L AL + +T+G
Sbjct: 757 ILYATETGKSQAYAKTLC-EIFKHAFDAKAMSMEEYDIVHLE-----HEALVLVVTSTFG 810
Query: 564 EGDPTDNAQDFYDWLQE------------------------------------------A 617
GDP +N + F L E +
Sbjct: 811 NGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFES 870
Query: 618 DVDLSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITW 797
L+ V+++VFGLG++ Y HF A G VD LE+LG +RI F TW
Sbjct: 871 TGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCGQEEAFRTW 930
Query: 798 REQFWPAVCEHFGV 839
++ + A C+ F V
Sbjct: 931 AKKVFKAACDVFCV 944
>ref|NP_035057.1| nitric oxide synthase, inducible [Mus musculus].
Length = 1144
Score = 57.4 bits (137), Expect = 2e-08
Identities = 44/169 (26%), Positives = 67/169 (39%)
Frame = +3
Query: 339 SSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLP 518
S + K+ + V + ++TG +E A L+ Y ++Y S L
Sbjct: 520 SMLMRKVMASRVRATVLFATETGKSEALARDLAT-LFSYAFNTKVVCMDQYKASTLE--- 575
Query: 519 EIENALAVFCMATYGEGDPTDNAQDFYDWLQEADVDLSGVKYAVFGLGNKTYEHFNAMGK 698
E L + +T+G GD N Q L +YAVFGLG+ Y F A
Sbjct: 576 --EEQLLLVVTSTFGNGDCPSNGQTLKKSLFMLRELNHTFRYAVFGLGSSMYPQFCAFAH 633
Query: 699 YVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGVEA 845
+D++L LGA ++ F +W Q + A CE F V +
Sbjct: 634 DIDQKLSHLGASQLAPTGEGDELSGQEDAFRSWAVQTFRAACETFDVRS 682
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,765,726
Number of extensions: 816281
Number of successful extensions: 3336
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3317
Number of HSP's successfully gapped: 8
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013357
(968 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000932.3| NADPH--cytochrome P450 reductase [Homo sapiens]. 493 e-139
Alignment gi|NP_060734.2| tRNA wybutosine-synthesizing protein 1 homolog ... 95 8e-20
Alignment gi|NP_076915.2| methionine synthase reductase isoform 2 [Homo s... 74 2e-13
Alignment gi|NP_001137500.1| NADPH-dependent diflavin oxidoreductase 1 is... 74 2e-13
Alignment gi|NP_001137499.1| NADPH-dependent diflavin oxidoreductase 1 is... 74 2e-13
Alignment gi|NP_001137498.1| NADPH-dependent diflavin oxidoreductase 1 is... 74 2e-13
Alignment gi|NP_055249.1| NADPH-dependent diflavin oxidoreductase 1 isofo... 74 2e-13
Alignment gi|NP_002445.2| methionine synthase reductase isoform 1 [Homo s... 73 3e-13
Alignment gi|NP_001138912.1| tRNA wybutosine-synthesizing protein 1 homol... 72 1e-12
Alignment gi|NP_000594.2| nitric oxide synthase, endothelial isoform 1 [H... 66 4e-11
>ref|NP_000932.3| NADPH--cytochrome P450 reductase [Homo sapiens].
Length = 680
Score = 493 bits (1268), Expect = e-139
Identities = 240/279 (86%), Positives = 255/279 (91%)
Frame = +3
Query: 132 VISMGDSNVDTGTTTSEMVAEEVSLFSATDMVLFSLIVGLLTYWFIFRKKKDEVPEFTKI 311
+I+MGDS+VDT +T SE VAEEVSLFS TDM+LFSLIVGLLTYWF+FRKKK+EVPEFTKI
Sbjct: 1 MINMGDSHVDTSSTVSEAVAEEVSLFSMTDMILFSLIVGLLTYWFLFRKKKEEVPEFTKI 60
Query: 312 ETTTSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEY 491
+T TSSV++SSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGM+ADPEEY
Sbjct: 61 QTLTSSVRESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEY 120
Query: 492 DLSDLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDWLQEADVDLSGVKYAVFGLGNKT 671
DL+DLSSLPEI+NAL VFCMATYGEGDPTDNAQDFYDWLQE DVDLSGVK+AVFGLGNKT
Sbjct: 121 DLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQETDVDLSGVKFAVFGLGNKT 180
Query: 672 YEHFNAMGKYVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGVEATG 851
YEHFNAMGKYVDKRLEQLGAQRIF FITWREQFWPAVCEHFGVEATG
Sbjct: 181 YEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHFGVEATG 240
Query: 852 EESSIRQYELVVHTDMDTAVVYTGEMGRLKSYENQKPPF 968
EESSIRQYELVVHTD+D A VY GEMGRLKSYENQKPPF
Sbjct: 241 EESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPF 279
>ref|NP_060734.2| tRNA wybutosine-synthesizing protein 1 homolog [Homo sapiens].
Length = 732
Score = 95.1 bits (235), Expect = 8e-20
Identities = 55/127 (43%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Frame = +3
Query: 384 VFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCMATYG 563
+FYGSQTGTA+ FA L++ + + +EYD D + VF +ATY
Sbjct: 81 IFYGSQTGTAKGFATVLAEAVTSLDLPVAIINLKEYDPDDHLIEEVTSKNVCVFLVATYT 140
Query: 564 EGDPTDNAQDFYDWLQEADVD-------LSGVKYAVFGLGNKTY-EHFNAMGKYVDKRLE 719
+G PT++A+ F WL+EA +D L G++YAVFGLGN Y HFN +GK VDK L
Sbjct: 141 DGLPTESAEWFCKWLEEASIDFRFGKTYLKGMRYAVFGLGNSAYASHFNKVGKNVDKWLW 200
Query: 720 QLGAQRI 740
LGA R+
Sbjct: 201 MLGAHRV 207
>ref|NP_076915.2| methionine synthase reductase isoform 2 [Homo sapiens].
Length = 725
Score = 73.9 bits (180), Expect = 2e-13
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 3/177 (1%)
Frame = +3
Query: 342 SFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPE 521
SF + R ++ Y +Q G A+ A + + A +G E D DL +
Sbjct: 19 SFTVTCLEVMRRFLLLYATQQGQAKAIAEEICEQAVVHGFSADLHCISESDKYDLKT--- 75
Query: 522 IENALAVFCMATYGEGDPTDNAQDFYDWLQEADVDL---SGVKYAVFGLGNKTYEHFNAM 692
E A V ++T G GDP D A+ F +Q + + + ++Y + GLG+ Y +F
Sbjct: 76 -ETAPLVVVVSTTGTGDPPDTARKFVKEIQNQTLPVDFFAHLRYGLLGLGDSEYTYFCNG 134
Query: 693 GKYVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGVEATGEESS 863
GK +DKRL++LGA+ + W WPA+ +HF EE S
Sbjct: 135 GKIIDKRLQELGARHFYDTGHADDCVGLELVVEPWIAGLWPALRKHFRSSRGQEEIS 191
>ref|NP_001137500.1| NADPH-dependent diflavin oxidoreductase 1 isoform c [Homo sapiens].
Length = 590
Score = 73.9 bits (180), Expect = 2e-13
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Frame = +3
Query: 378 IIVFYGSQTGTAEEFANRLSKDA--HRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCM 551
++V +GSQTGTA++ + RL ++A R G R A D Y + +L I L +F
Sbjct: 6 LLVLFGSQTGTAQDVSERLGREARRRRLGCRVQALD--SYPVVNL-----INEPLVIFVC 58
Query: 552 ATYGEGDPTDNAQDFYDWLQEADVD---LSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQ 722
AT G+GDP DN ++F+ ++ ++ L + +AV GLG+ +Y FN + K + +RL Q
Sbjct: 59 ATTGQGDPPDNMKNFWRFIFRKNLPSTALCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQ 118
Query: 723 LGAQRI 740
LG +
Sbjct: 119 LGGSAL 124
>ref|NP_001137499.1| NADPH-dependent diflavin oxidoreductase 1 isoform d [Homo sapiens].
Length = 521
Score = 73.9 bits (180), Expect = 2e-13
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Frame = +3
Query: 378 IIVFYGSQTGTAEEFANRLSKDA--HRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCM 551
++V +GSQTGTA++ + RL ++A R G R A D Y + +L I L +F
Sbjct: 6 LLVLFGSQTGTAQDVSERLGREARRRRLGCRVQALD--SYPVVNL-----INEPLVIFVC 58
Query: 552 ATYGEGDPTDNAQDFYDWLQEADVD---LSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQ 722
AT G+GDP DN ++F+ ++ ++ L + +AV GLG+ +Y FN + K + +RL Q
Sbjct: 59 ATTGQGDPPDNMKNFWRFIFRKNLPSTALCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQ 118
Query: 723 LGAQRI 740
LG +
Sbjct: 119 LGGSAL 124
>ref|NP_001137498.1| NADPH-dependent diflavin oxidoreductase 1 isoform a [Homo sapiens].
Length = 606
Score = 73.9 bits (180), Expect = 2e-13
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Frame = +3
Query: 378 IIVFYGSQTGTAEEFANRLSKDA--HRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCM 551
++V +GSQTGTA++ + RL ++A R G R A D Y + +L I L +F
Sbjct: 6 LLVLFGSQTGTAQDVSERLGREARRRRLGCRVQALD--SYPVVNL-----INEPLVIFVC 58
Query: 552 ATYGEGDPTDNAQDFYDWLQEADVD---LSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQ 722
AT G+GDP DN ++F+ ++ ++ L + +AV GLG+ +Y FN + K + +RL Q
Sbjct: 59 ATTGQGDPPDNMKNFWRFIFRKNLPSTALCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQ 118
Query: 723 LGAQRI 740
LG +
Sbjct: 119 LGGSAL 124
>ref|NP_055249.1| NADPH-dependent diflavin oxidoreductase 1 isoform b [Homo sapiens].
Length = 597
Score = 73.9 bits (180), Expect = 2e-13
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Frame = +3
Query: 378 IIVFYGSQTGTAEEFANRLSKDA--HRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCM 551
++V +GSQTGTA++ + RL ++A R G R A D Y + +L I L +F
Sbjct: 6 LLVLFGSQTGTAQDVSERLGREARRRRLGCRVQALD--SYPVVNL-----INEPLVIFVC 58
Query: 552 ATYGEGDPTDNAQDFYDWLQEADVD---LSGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQ 722
AT G+GDP DN ++F+ ++ ++ L + +AV GLG+ +Y FN + K + +RL Q
Sbjct: 59 ATTGQGDPPDNMKNFWRFIFRKNLPSTALCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQ 118
Query: 723 LGAQRI 740
LG +
Sbjct: 119 LGGSAL 124
>ref|NP_002445.2| methionine synthase reductase isoform 1 [Homo sapiens].
Length = 698
Score = 73.2 bits (178), Expect = 3e-13
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%)
Frame = +3
Query: 372 RNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLSDLSSLPEIENALAVFCM 551
R ++ Y +Q G A+ A + + A +G E D DL + E A V +
Sbjct: 2 RRFLLLYATQQGQAKAIAEEICEQAVVHGFSADLHCISESDKYDLKT----ETAPLVVVV 57
Query: 552 ATYGEGDPTDNAQDFYDWLQEADVDL---SGVKYAVFGLGNKTYEHFNAMGKYVDKRLEQ 722
+T G GDP D A+ F +Q + + + ++Y + GLG+ Y +F GK +DKRL++
Sbjct: 58 STTGTGDPPDTARKFVKEIQNQTLPVDFFAHLRYGLLGLGDSEYTYFCNGGKIIDKRLQE 117
Query: 723 LGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHFGVEATGEESS 863
LGA+ + W WPA+ +HF EE S
Sbjct: 118 LGARHFYDTGHADDCVGLELVVEPWIAGLWPALRKHFRSSRGQEEIS 164
>ref|NP_001138912.1| tRNA wybutosine-synthesizing protein 1 homolog B isoform 1 [Homo
sapiens].
Length = 668
Score = 71.6 bits (174), Expect = 1e-12
Identities = 40/96 (41%), Positives = 59/96 (61%), Gaps = 8/96 (8%)
Frame = +3
Query: 477 DPEEYDLSDLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDWLQEADVD-------LSG 635
DP+++ + +++S + VF +ATY +G PT++A+ F WL+EA +D L G
Sbjct: 71 DPDDHLIEEVTS-----KNVCVFLVATYTDGLPTESAEWFCKWLEEASIDFRFGKTYLKG 125
Query: 636 VKYAVFGLGNKTY-EHFNAMGKYVDKRLEQLGAQRI 740
++ AVFGLGN Y HFN +GK VDK L LG R+
Sbjct: 126 MRDAVFGLGNSAYASHFNKVGKNVDKWLWMLGVHRV 161
>ref|NP_000594.2| nitric oxide synthase, endothelial isoform 1 [Homo sapiens].
Length = 1203
Score = 66.2 bits (160), Expect = 4e-11
Identities = 62/242 (25%), Positives = 97/242 (40%), Gaps = 51/242 (21%)
Frame = +3
Query: 267 IFRKKK-DEVPEFTKIETTTSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKD 443
I RKK EV KI ++S+ + +++K T + YGS+TG A+ +A +L +
Sbjct: 490 ITRKKTFKEVANAVKI---SASLMGTVMAKRVKAT-----ILYGSETGRAQSYAQQLGRL 541
Query: 444 AHRYGMRGMAADP-----EEYDLSDLSSLPEIENALAVFCMATYGEGDPTDNAQDFYDWL 608
+ A DP +EYD+ L L + +T+G GDP +N + F L
Sbjct: 542 FRK------AFDPRVLCMDEYDVVSLE-----HETLVLVVTSTFGNGDPPENGESFAAAL 590
Query: 609 QE-----------------------------------------ADVDLSG----VKYAVF 653
E ++ D +G +++ VF
Sbjct: 591 MEMSGPYNSSPRPEQHKSYKIRFNSISCSDPLVSSWRRKRKESSNTDSAGALGTLRFCVF 650
Query: 654 GLGNKTYEHFNAMGKYVDKRLEQLGAQRIFXXXXXXXXXXXXXXFITWREQFWPAVCEHF 833
GLG++ Y HF A + VD RLE+LG +R+ F W + + A CE F
Sbjct: 651 GLGSRAYPHFCAFARAVDTRLEELGGERLLQLGQGDELCGQEEAFRGWAQAAFQAACETF 710
Query: 834 GV 839
V
Sbjct: 711 CV 712
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,418,799
Number of extensions: 984455
Number of successful extensions: 4132
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4096
Number of HSP's successfully gapped: 15
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013357
(968 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894019.2| Sus scrofa unplaced genomic scaffold ChrUScaf1904 303 9e-80
>gb|GL894019.2| Sus scrofa unplaced genomic scaffold ChrUScaf1904
Length = 181737
Score = 303 bits (153), Expect = 9e-80
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 497 gtctgacctgagcagcctgccagagatcgagaacgccctggcagtgttctgcatggccac 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48846 gtctgacctgagcagcctgccagagatcgagaacgccctggcagtgttctgcatggccac 48905
Query: 557 ctacggcgagggggaccccactgacaatgcccaggacttctacgactggctgcaggaggc 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48906 ctacggcgagggggaccccactgacaatgcccaggacttctacgactggctgcaggaggc 48965
Query: 617 agacgtggacctctctggagtcaagtatgcggt 649
|||||||||||||||||||||||||||||||||
Sbjct: 48966 agacgtggacctctctggagtcaagtatgcggt 48998
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 195 gaagtgtcccttttcagcgccacagacatggtcctgttttctctcatcgtgggtctcctg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29145 gaagtgtcccttttcagcgccacagacatggtcctgttttctctcatcgtgggtctcctg 29204
Query: 255 acctactggttcatcttcagaaagaaaaaagacgaagtccccgaattcaccaaaattgag 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29205 acctactggttcatcttcagaaagaaaaaagacgaagtccccgaattcaccaaaattgag 29264
Query: 315 accacg 320
||||||
Sbjct: 29265 accacg 29270
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 647 ggtattcggccttgggaacaagacctacgagcacttcaatgccatgggcaagtatgtgga 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49426 ggtattcggccttgggaacaagacctacgagcacttcaatgccatgggcaagtatgtgga 49485
Query: 707 caagcggctggagcagctcggggcccagcggatctttgatctggggctgggcgacgacga 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49486 caagcggctggagcagctcggggcccagcggatctttgatctggggctgggcgacgacga 49545
Query: 767 cggcaa 772
||||||
Sbjct: 49546 cggcaa 49551
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 49 gataagatactgcgcattgaccagcacggcagaagcttcccttgtgcctcctcccccact 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16863 gataagatactgcgcattgaccagcacggcagaagcttcccttgtgcctcctcccccact 16922
Query: 109 cgcgacccttgacccaaag 127
|||||||||||||||||||
Sbjct: 16923 cgcgacccttgacccaaag 16941
Score = 121 bits (61), Expect = 7e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 437 caaggacgcccaccgctacgggatgcggggcatggccgcggaccccgaggagtatgacct 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47268 caaggacgcccaccgctacgggatgcggggcatggccgcggaccccgaggagtatgacct 47327
Query: 497 g 497
|
Sbjct: 47328 g 47328
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 368 gggcaggaacatcatcgtgttctacggctcccagacggggacggcggaggagttc 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47113 gggcaggaacatcatcgtgttctacggctcccagacggggacggcggaggagttc 47167
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 907 ccgtggtgtacacgggcgagatggggcgcctgaagagctatgagaaccagaagcc 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50534 ccgtggtgtacacgggcgagatggggcgcctgaagagctatgagaaccagaagcc 50588
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 320 gacctcctccgtcaaagacagcagcttcgtggaaaagatgaagaagacgg 369
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44213 gacctcctccgtcaaagacagcagcttcgtggaaaagatgaagaagacgg 44262
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 126 agtttcgtgatcagcatgggggactccaacgtggatactggcaccac 172
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28998 agtttcgtgatcagcatgggggactccaacgtggatactggcaccac 29044
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 773 cctcgaggaggacttcatcacgtggcgagagcagttctggccagcc 818
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49933 cctcgaggaggacttcatcacgtggcgagagcagttctggccagcc 49978
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,575,848
Number of extensions: 104
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 10
Length of query: 968
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 947
Effective length of database: 2,808,413,156
Effective search space: 2659567258732
Effective search space used: 2659567258732
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)