Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013365
(1101 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854678.1| PREDICTED: similar to pro-oncosis receptor indu... 105 8e-23
>ref|XP_854678.1| PREDICTED: similar to pro-oncosis receptor inducing membrane injury
gene [Canis familiaris].
Length = 169
Score = 105 bits (262), Expect = 8e-23
Identities = 65/149 (43%), Positives = 74/149 (49%)
Frame = +2
Query: 506 SKNSTTPTLKTTAKPSTTPVSSVSKNATAATLKPIATTKMXXXXXXXXXXXXXXXXXXXX 685
+ N T+ + ++ KP TTP+S +SK ATA A
Sbjct: 35 TSNYTSQSTTSSTKPLTTPLSPISKTATATARITTAGVSANRISTSSG------------ 82
Query: 686 XVSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSKENKGSKFDTGSFVGGIVLTLGV 865
SQ NSK N GSKFDTGSF+GGIVLTLGV
Sbjct: 83 --SQNTTQATLATETIAHNSSATALSLSVTITPTINSKGNPGSKFDTGSFLGGIVLTLGV 140
Query: 866 LSFLYIGCKMYYSRRGIRYRTIDEHDAII 952
LS LYIGC+MYYSRRGIRYRTIDEHDAII
Sbjct: 141 LSILYIGCRMYYSRRGIRYRTIDEHDAII 169
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,205,347
Number of extensions: 843681
Number of successful extensions: 3091
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3070
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 263
Effective length of database: 15,407,560
Effective search space: 4052188280
Effective search space used: 4052188280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013365
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013365
(1101 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002692982.1| PREDICTED: porimin-like [Bos taurus]. 117 2e-26
>ref|XP_002692982.1| PREDICTED: porimin-like [Bos taurus].
Length = 318
Score = 117 bits (292), Expect = 2e-26
Identities = 80/161 (49%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
Frame = +2
Query: 482 KSSTTPVS--SKNSTTPTLKTTAKPST-TPVSSVSKNATAATLKPIATTKMXXXXXXXXX 652
K+ST VS SKN TT TLK K S+ T S S + T+ T P AT+KM
Sbjct: 163 KTSTASVSPVSKNVTTTTLKDIGKSSSETKDSPASNHGTSTTSTPFATSKMITPVVSTNM 222
Query: 653 XXXXXXXXXXXX-VSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSKENKGSKFDTG 829
VSQ SKENKGSKFDTG
Sbjct: 223 TSTTLRSTPKITNVSQNTSQVSVSTVPTAHNSSSSVTVTTTII-----SKENKGSKFDTG 277
Query: 830 SFVGGIVLTLGVLSFLYIGCKMYYSRRGIRYRTIDEHDAII 952
SFVGGIVLTLGVLSFLYIGCK+YYSRRGIRYRTIDEHDAII
Sbjct: 278 SFVGGIVLTLGVLSFLYIGCKVYYSRRGIRYRTIDEHDAII 318
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,815,883
Number of extensions: 826920
Number of successful extensions: 3356
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3295
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,240,222
Effective search space: 3745178386
Effective search space used: 3745178386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013365
(1101 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357308.1| PREDICTED: porimin-like [Sus scrofa]. 112 3e-25
Alignment gi|XP_003129861.2| PREDICTED: hypothetical protein LOC100523081... 63 3e-10
>ref|XP_003357308.1| PREDICTED: porimin-like [Sus scrofa].
Length = 110
Score = 112 bits (281), Expect = 3e-25
Identities = 54/54 (100%), Positives = 54/54 (100%)
Frame = +2
Query: 791 NSKENKGSKFDTGSFVGGIVLTLGVLSFLYIGCKMYYSRRGIRYRTIDEHDAII 952
NSKENKGSKFDTGSFVGGIVLTLGVLSFLYIGCKMYYSRRGIRYRTIDEHDAII
Sbjct: 57 NSKENKGSKFDTGSFVGGIVLTLGVLSFLYIGCKMYYSRRGIRYRTIDEHDAII 110
>ref|XP_003129861.2| PREDICTED: hypothetical protein LOC100523081 [Sus scrofa].
Length = 236
Score = 62.8 bits (151), Expect = 3e-10
Identities = 35/58 (60%), Positives = 36/58 (62%)
Frame = +2
Query: 209 MGLGSRGFXXXXXXXXXXXXXXXXXXXDSTDLEESADKKNSMSLKGNGADPTALQVPL 382
MGLGSRGF DSTDLEESADKKNSMSLKGNGADPT Q+ L
Sbjct: 1 MGLGSRGFLAVLALGAVLAIALLKIVADSTDLEESADKKNSMSLKGNGADPTDDQLCL 58
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,710,183
Number of extensions: 527585
Number of successful extensions: 1940
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1925
Number of HSP's successfully gapped: 2
Length of query: 367
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,854,232
Effective search space: 2364079944
Effective search space used: 2364079944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013365
(1101 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598500.1| porimin precursor [Mus musculus]. 97 2e-20
>ref|NP_598500.1| porimin precursor [Mus musculus].
Length = 195
Score = 97.4 bits (241), Expect = 2e-20
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = +2
Query: 800 ENKGSKFDTGSFVGGIVLTLGVLSFLYIGCKMYYSRRGIRYRTIDEHDAII 952
+ KGSKFD GSFVGGIVLTLGVLS LYIGCKMYYSRRGIRYR+IDEHDAII
Sbjct: 145 KGKGSKFDAGSFVGGIVLTLGVLSILYIGCKMYYSRRGIRYRSIDEHDAII 195
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,656,324
Number of extensions: 725467
Number of successful extensions: 2972
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2911
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 264
Effective length of database: 12,523,851
Effective search space: 3306296664
Effective search space used: 3306296664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013365
(1101 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_443164.2| porimin precursor [Homo sapiens]. 122 6e-28
>ref|NP_443164.2| porimin precursor [Homo sapiens].
Length = 208
Score = 122 bits (306), Expect = 6e-28
Identities = 92/250 (36%), Positives = 108/250 (43%), Gaps = 2/250 (0%)
Frame = +2
Query: 209 MGLGSRGFXXXXXXXXXXXXXXXXXXXDSTDLEESADKKNSMSLKGNGADPTAL--QVPL 382
MGLG+RG +S + SA+ +NS + A+ T VP
Sbjct: 1 MGLGARGAWAALLLGTLQVLALLGAAHESAAMAASANIENSGLPHNSSANSTETLQHVPS 60
Query: 383 GRTNESSNFTVKLSATQXXXXXXXXXXXXXXIAKSSTTPVSSKNSTTPTLKTTAKPSTTP 562
TNE+SN TVK ++ S N+T T+K TA +TT
Sbjct: 61 DHTNETSNSTVK---------------------PPTSVASDSSNTTVTTMKPTAASNTTT 99
Query: 563 VSSVSKNATAATLKPIATTKMXXXXXXXXXXXXXXXXXXXXXVSQXXXXXXXXXXXXXXX 742
VS N T+ TLK T VSQ
Sbjct: 100 PGMVSTNMTSTTLKSTPKTTS---------------------VSQNTSQISTSTMTVTHN 138
Query: 743 XXXXXXXXXXXXXXXXNSKENKGSKFDTGSFVGGIVLTLGVLSFLYIGCKMYYSRRGIRY 922
+S+ KGSKFDTGSFVGGIVLTLGVLS LYIGCKMYYSRRGIRY
Sbjct: 139 SSVTSAASSVTITTTMHSEAKKGSKFDTGSFVGGIVLTLGVLSILYIGCKMYYSRRGIRY 198
Query: 923 RTIDEHDAII 952
RTIDEHDAII
Sbjct: 199 RTIDEHDAII 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,689,652
Number of extensions: 843886
Number of successful extensions: 3663
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3524
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,868,908
Effective search space: 3910522804
Effective search space used: 3910522804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013365
(1101 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 813 0.0
Sscrofa_Chr13 345 3e-92
>Sscrofa_Chr09
|| Length = 153670197
Score = 813 bits (410), Expect = 0.0
Identities = 413/414 (99%)
Strand = Plus / Minus
Query: 363 cagccctgcaggtgcctttaggccgtacaaatgaatcttctaacttcactgtgaaactat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37038695 cagccctgcaggtgcctttaggccgtacaaatgaatcttctaacttcactgtgaaactat 37038636
Query: 423 cagcaactcaagtttccccagtctcaaaggtgacaactaccacctcgaaacccatagcaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37038635 cagcaactcaagtttccccagtctcaaaggtgacaactaccacctcgaaacccatagcaa 37038576
Query: 483 aatcgtcaacaactccagtttcttcaaagaattcaacaacccccactttgaaaaccacag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37038575 aatcgtcaacaactccagtttcttcaaagaattcaacaacccccactttgaaaaccacag 37038516
Query: 543 caaaaccatcaacaactcctgtttcctcagtctccaagaatgcaacagccgccaccttga 602
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 37038515 caaaaccatcaacaactcctgtttcctcagtctccaagaatgcaacagccaccaccttga 37038456
Query: 603 aacccatagcaacaactaaaatgacaccacaggtctcaacaaatacgacttccaccacca 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37038455 aacccatagcaacaactaaaatgacaccacaggtctcaacaaatacgacttccaccacca 37038396
Query: 663 taaggtctacacccaaaataacaagtgtttcacagaatatatcccagatgtcaacatcca 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37038395 taaggtctacacccaaaataacaagtgtttcacagaatatatcccagatgtcaacatcca 37038336
Query: 723 caatgaacacaacccacaatagttcggtgacatctgtttctccatcagtaacaa 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37038335 caatgaacacaacccacaatagttcggtgacatctgtttctccatcagtaacaa 37038282
Score = 595 bits (300), Expect = e-167
Identities = 306/308 (99%)
Strand = Plus / Minus
Query: 1 cccgcagctgtggccggcacgcgacgccccctctaggcccggctcccgcgccctatttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37080640 cccgcagctgtggccggcacgcgacgccccctctaggcccggctcccgcgccctatttgg 37080581
Query: 61 tctctgcgggttaggcagcaggaggggaggcgtgcgcggcggaaggggacgcggagcgga 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 37080580 tctctgcgggttaggcagcaggaggagaggcgtgcgcggcggaaggggacgcggagcgga 37080521
Query: 121 ctcgggtgcgcgaaggctcctctctcactcgcgcagccgctacctcggttgcgagcccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37080520 ctcgggtgcgcgaaggctcctctctcactcgcgcagccgctacctcggttgcgagcccac 37080461
Query: 181 gaggcctccgcgtcttgccctcggaacaatgggactcggctcgcgaggtttcttggcggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37080460 gaggcctccgcgtcttgccctcggaacaatgggactcggctcgcgaggtttcttggcggt 37080401
Query: 241 gctggctctaggggccgtgctggcgatagcgctgctgaagattgtcgccgacagcacaga 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37080400 gctggccctaggggccgtgctggcgatagcgctgctgaagattgtcgccgacagcacaga 37080341
Query: 301 cttggagg 308
||||||||
Sbjct: 37080340 cttggagg 37080333
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Minus
Query: 931 tgacgaacatgatgccatcatttaagggactctaaggaccaaaagaaagaagaaagattg 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37033969 tgacgaacatgatgccatcatttaagggactctaaggaccaaaagaaagaagaaagattg 37033910
Query: 991 atgcagccctatcattctcttcttgaaaatagctaaacaggccatgcatataatgtacaa 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37033909 atgcagccctatcattctcttcttgaaaatagctaaacaggccatgcatataatgtacaa 37033850
Query: 1051 tgtattatataagtatgtaaagattccttgtgattactaaaggtaaaaagg 1101
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37033849 tgtattatataagtatgtaaagattccttgtgattactaaaggtaaaaagg 37033799
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 777 tcacagcaactattaattctaaggaaaataaaggatcaaaatttgataccggcagctttg 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37036909 tcacagcaactattaattctaaggaaaataaaggatcaaaatttgataccggcagctttg 37036850
Query: 837 ttggtggtattgtattaacactgggagttttatcttttctttacattggctgcaaaatgt 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37036849 ttggtggtattgtattaacactgggagttttatcttttctttacattggctgcaaaatgt 37036790
Query: 897 attattcaagaagaggcattcggtatagaaccat 930
||||||||||||||||||||||||||||||||||
Sbjct: 37036789 attattcaagaagaggcattcggtatagaaccat 37036756
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 308 gaatctgcagacaagaagaattctatgtctctaaaaggcaacggtgctgacccaacag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37075606 gaatctgcagacaagaagaattctatgtctctaaaaggcaacggtgctgacccaacag 37075549
>Sscrofa_Chr13
|| Length = 218635234
Score = 345 bits (174), Expect = 3e-92
Identities = 312/354 (88%), Gaps = 3/354 (0%)
Strand = Plus / Minus
Query: 506 tcaaagaattcaacaacccccactttgaaaaccacagcaaaaccatcaacaactcctgtt 565
|||||||| |||| ||| |||| |||||||| |||||||||| ||||| |||||||||
Sbjct: 72268190 tcaaagaactcaataactaccaccttgaaaactacagcaaaactgtcaacgactcctgtt 72268131
Query: 566 tcctcagtctccaagaatgcaacagccgccaccttgaaacccatagcaacaactaaaatg 625
||||||||||| ||||||||| |||| |||||||||||||| | |||| || ||||||||
Sbjct: 72268130 tcctcagtctcaaagaatgcagcagctgccaccttgaaacctagagcagcatctaaaatg 72268071
Query: 626 acaccacaggtctcaacaaatacgacttccaccaccataaggtctacacccaaaataaca 685
|||||| ||||||||||||| | ||||| ||| ||| | |||||||||||| ||||||||
Sbjct: 72268070 acaccagaggtctcaacaaacatgactttcacaaccttgaggtctacaccc-aaataaca 72268012
Query: 686 agtgtttcacagaatatatcccagatgtcaacatccacaatgaacacaacccacaatagt 745
||| |||||||||| | |||||||||||||||||||| ||||| || ||| ||||||||
Sbjct: 72268011 agtatttcacagaacacatcccagatgtcaacatccataatgaccaaaacttacaatagt 72267952
Query: 746 tcggtg-acatctgtttctccatcagtaacaatcacagcaactattaattctaaggaaaa 804
| |||| | |||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 72267951 ttggtgaatatctgtttcttcatcagtaacaatcacagcaactattaagtctaaggaaaa 72267892
Query: 805 taaaggatcaaaatttgataccggcagctttg-ttggtggtattgtattaacac 857
|||||||||| ||||||||| |||||||||| ||||||||||||| |||||||
Sbjct: 72267891 taaaggatcacaatttgatagtggcagctttgtttggtggtattgtcttaacac 72267838
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,933,398
Number of extensions: 316
Number of successful extensions: 316
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 6
Length of query: 1101
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1080
Effective length of database: 2,808,413,156
Effective search space: 3033086208480
Effective search space used: 3033086208480
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)