Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013367
(1100 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531867.1| PREDICTED: similar to Cysteine dioxygenase type... 401 e-112
>ref|XP_531867.1| PREDICTED: similar to Cysteine dioxygenase type I (CDO) (CDO-I)
[Canis familiaris].
Length = 200
Score = 401 bits (1030), Expect = e-112
Identities = 190/200 (95%), Positives = 194/200 (97%)
Frame = +1
Query: 265 MEQTEVLKPRTLADLIRILHQLFASEEVNVEEVQAVMEAYESDPAEWAMYAKFDQYRYTR 444
MEQTEVLKPRTLA+LIRILHQLFA EEVNVEEVQAV+EAYESDPAEWA YAKFDQYRYTR
Sbjct: 1 MEQTEVLKPRTLAELIRILHQLFAGEEVNVEEVQAVLEAYESDPAEWAAYAKFDQYRYTR 60
Query: 445 NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK 624
NLVD+GNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK
Sbjct: 61 NLVDEGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK 120
Query: 625 SERILRENQCAYINDSIGLHRVENMSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT 804
SER LRENQCAYINDSIGLHRVEN+SHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT
Sbjct: 121 SERTLRENQCAYINDSIGLHRVENISHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT 180
Query: 805 FHSKFGIRTPLATSGSLENN 864
FHSKFGIRTP SGSLENN
Sbjct: 181 FHSKFGIRTPFTASGSLENN 200
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,500,465
Number of extensions: 1176866
Number of successful extensions: 3287
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3286
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 262
Effective length of database: 15,407,560
Effective search space: 4036780720
Effective search space used: 4036780720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013367
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013367
(1100 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029637.1| cysteine dioxygenase type 1 [Bos taurus]. 402 e-112
Alignment gi|XP_002684790.1| PREDICTED: cysteine dioxygenase type 1-like ... 275 4e-74
Alignment gi|XP_002702447.1| PREDICTED: cysteine dioxygenase type 1-like ... 275 4e-74
>ref|NP_001029637.1| cysteine dioxygenase type 1 [Bos taurus].
Length = 200
Score = 402 bits (1032), Expect = e-112
Identities = 189/200 (94%), Positives = 196/200 (98%)
Frame = +1
Query: 265 MEQTEVLKPRTLADLIRILHQLFASEEVNVEEVQAVMEAYESDPAEWAMYAKFDQYRYTR 444
ME+TEVLKPRTLADLIR+LHQLFA EE+NVEEVQAVMEAYES+PAEWA+YAKFDQYRYTR
Sbjct: 1 MERTEVLKPRTLADLIRVLHQLFAGEEINVEEVQAVMEAYESNPAEWAVYAKFDQYRYTR 60
Query: 445 NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK 624
NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK
Sbjct: 61 NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK 120
Query: 625 SERILRENQCAYINDSIGLHRVENMSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT 804
SERILRENQCAYINDSIGLHRVEN+SHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKV MT
Sbjct: 121 SERILRENQCAYINDSIGLHRVENISHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVIMT 180
Query: 805 FHSKFGIRTPLATSGSLENN 864
FHSKFGI+TP TSGSLENN
Sbjct: 181 FHSKFGIKTPFTTSGSLENN 200
>ref|XP_002684790.1| PREDICTED: cysteine dioxygenase type 1-like [Bos taurus].
Length = 158
Score = 275 bits (704), Expect = 4e-74
Identities = 130/140 (92%), Positives = 134/140 (95%)
Frame = +1
Query: 445 NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK 624
NLVDQGNGKFNLMILCWGEGHGSSIHDH DS+CFLKMLQGN ETLFAW DKKSNEMIKK
Sbjct: 20 NLVDQGNGKFNLMILCWGEGHGSSIHDHIDSYCFLKMLQGNC-ETLFAWADKKSNEMIKK 78
Query: 625 SERILRENQCAYINDSIGLHRVENMSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT 804
SERILRENQCAYINDSIGLHRVEN+SHTEPA+SLHLYSPPFDTCHAFDQRTGHK+KVTMT
Sbjct: 79 SERILRENQCAYINDSIGLHRVENISHTEPAMSLHLYSPPFDTCHAFDQRTGHKSKVTMT 138
Query: 805 FHSKFGIRTPLATSGSLENN 864
FHSKFGIRTP TSGSLENN
Sbjct: 139 FHSKFGIRTPFTTSGSLENN 158
>ref|XP_002702447.1| PREDICTED: cysteine dioxygenase type 1-like [Bos taurus].
Length = 158
Score = 275 bits (704), Expect = 4e-74
Identities = 130/140 (92%), Positives = 134/140 (95%)
Frame = +1
Query: 445 NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK 624
NLVDQGNGKFNLMILCWGEGHGSSIHDH DS+CFLKMLQGN ETLFAW DKKSNEMIKK
Sbjct: 20 NLVDQGNGKFNLMILCWGEGHGSSIHDHIDSYCFLKMLQGNC-ETLFAWADKKSNEMIKK 78
Query: 625 SERILRENQCAYINDSIGLHRVENMSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT 804
SERILRENQCAYINDSIGLHRVEN+SHTEPA+SLHLYSPPFDTCHAFDQRTGHK+KVTMT
Sbjct: 79 SERILRENQCAYINDSIGLHRVENISHTEPAMSLHLYSPPFDTCHAFDQRTGHKSKVTMT 138
Query: 805 FHSKFGIRTPLATSGSLENN 864
FHSKFGIRTP TSGSLENN
Sbjct: 139 FHSKFGIRTPFTTSGSLENN 158
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,599,826
Number of extensions: 1143499
Number of successful extensions: 2933
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2931
Number of HSP's successfully gapped: 3
Length of query: 366
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 262
Effective length of database: 14,240,222
Effective search space: 3730938164
Effective search space used: 3730938164
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013367
(1100 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161115.1| cysteine dioxygenase type 1 [Sus scrofa]. 417 e-117
>ref|NP_001161115.1| cysteine dioxygenase type 1 [Sus scrofa].
Length = 200
Score = 417 bits (1072), Expect = e-117
Identities = 200/200 (100%), Positives = 200/200 (100%)
Frame = +1
Query: 265 MEQTEVLKPRTLADLIRILHQLFASEEVNVEEVQAVMEAYESDPAEWAMYAKFDQYRYTR 444
MEQTEVLKPRTLADLIRILHQLFASEEVNVEEVQAVMEAYESDPAEWAMYAKFDQYRYTR
Sbjct: 1 MEQTEVLKPRTLADLIRILHQLFASEEVNVEEVQAVMEAYESDPAEWAMYAKFDQYRYTR 60
Query: 445 NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK 624
NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK
Sbjct: 61 NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK 120
Query: 625 SERILRENQCAYINDSIGLHRVENMSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT 804
SERILRENQCAYINDSIGLHRVENMSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT
Sbjct: 121 SERILRENQCAYINDSIGLHRVENMSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT 180
Query: 805 FHSKFGIRTPLATSGSLENN 864
FHSKFGIRTPLATSGSLENN
Sbjct: 181 FHSKFGIRTPLATSGSLENN 200
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,429,886
Number of extensions: 730902
Number of successful extensions: 1845
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1845
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 266
Effective length of database: 8,854,232
Effective search space: 2355225712
Effective search space used: 2355225712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013367
(1100 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_149026.1| cysteine dioxygenase type 1 [Mus musculus]. 396 e-110
>ref|NP_149026.1| cysteine dioxygenase type 1 [Mus musculus].
Length = 200
Score = 396 bits (1018), Expect = e-110
Identities = 186/200 (93%), Positives = 195/200 (97%)
Frame = +1
Query: 265 MEQTEVLKPRTLADLIRILHQLFASEEVNVEEVQAVMEAYESDPAEWAMYAKFDQYRYTR 444
ME+TE+LKPRTLADLIRILH+LFA +EVNVEEVQAV+EAYES+PAEWA+YAKFDQYRYTR
Sbjct: 1 MERTELLKPRTLADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTR 60
Query: 445 NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK 624
NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLK+LQGNLKETLF WPDKKSNEMIKK
Sbjct: 61 NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKK 120
Query: 625 SERILRENQCAYINDSIGLHRVENMSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT 804
SER LRENQCAYINDSIGLHRVEN+SHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT
Sbjct: 121 SERTLRENQCAYINDSIGLHRVENVSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT 180
Query: 805 FHSKFGIRTPLATSGSLENN 864
FHSKFGIRTP TSGSLENN
Sbjct: 181 FHSKFGIRTPFTTSGSLENN 200
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,131,387
Number of extensions: 988969
Number of successful extensions: 2498
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2495
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 263
Effective length of database: 12,523,851
Effective search space: 3293772813
Effective search space used: 3293772813
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013367
(1100 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001792.2| cysteine dioxygenase type 1 [Homo sapiens]. 405 e-113
>ref|NP_001792.2| cysteine dioxygenase type 1 [Homo sapiens].
Length = 200
Score = 405 bits (1042), Expect = e-113
Identities = 191/200 (95%), Positives = 197/200 (98%)
Frame = +1
Query: 265 MEQTEVLKPRTLADLIRILHQLFASEEVNVEEVQAVMEAYESDPAEWAMYAKFDQYRYTR 444
MEQTEVLKPRTLADLIRILHQLFA +EVNVEEVQA+MEAYESDP EWAMYAKFDQYRYTR
Sbjct: 1 MEQTEVLKPRTLADLIRILHQLFAGDEVNVEEVQAIMEAYESDPTEWAMYAKFDQYRYTR 60
Query: 445 NLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKETLFAWPDKKSNEMIKK 624
NLVDQGNGKFNLMILCWGEGHGSSIHDHT+SHCFLKMLQGNLKETLFAWPDKKSNEM+KK
Sbjct: 61 NLVDQGNGKFNLMILCWGEGHGSSIHDHTNSHCFLKMLQGNLKETLFAWPDKKSNEMVKK 120
Query: 625 SERILRENQCAYINDSIGLHRVENMSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT 804
SER+LRENQCAYINDSIGLHRVEN+SHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT
Sbjct: 121 SERVLRENQCAYINDSIGLHRVENISHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMT 180
Query: 805 FHSKFGIRTPLATSGSLENN 864
FHSKFGIRTP ATSGSLENN
Sbjct: 181 FHSKFGIRTPNATSGSLENN 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,675,413
Number of extensions: 1161461
Number of successful extensions: 2855
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2855
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 262
Effective length of database: 14,868,908
Effective search space: 3895653896
Effective search space used: 3895653896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013367
(1100 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 856 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 856 bits (432), Expect = 0.0
Identities = 435/436 (99%)
Strand = Plus / Minus
Query: 1 gggcccagggaggctgaacctagcaggtttggtcccgatttgcatgcttggcgggtaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124827992 gggcccagggaggctgaacctagcaggtttggtcccgatttgcatgcttggcgggtaccg 124827933
Query: 61 aggtccgccacggccaagctgccagggtacctcttgatatcttggcaagggtttctttac 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 124827932 aggtccgccacggccaagctgccagggtacctcttgatatcttgacaagggtttctttac 124827873
Query: 121 gctgtggcactcgtgcctttgggggctttgtgtctgtgtgcaactgtatagctagcagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124827872 gctgtggcactcgtgcctttgggggctttgtgtctgtgtgcaactgtatagctagcagct 124827813
Query: 181 aggggaccctcgcctcccagctcctcgttctctcagctcgttcgtcgcagcccagcagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124827812 aggggaccctcgcctcccagctcctcgttctctcagctcgttcgtcgcagcccagcagct 124827753
Query: 241 agacgcgcgtcagctgctcaagggatggagcaaaccgaggtgctcaagccacgcaccctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124827752 agacgcgcgtcagctgctcaagggatggagcaaaccgaggtgctcaagccacgcaccctg 124827693
Query: 301 gcggatctgatccgcatactgcaccagctcttcgccagcgaagaggtcaacgtggaggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124827692 gcggatctgatccgcatactgcaccagctcttcgccagcgaagaggtcaacgtggaggag 124827633
Query: 361 gtgcaggcagtcatggaagcctatgagagcgaccccgcggagtgggccatgtacgccaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124827632 gtgcaggcagtcatggaagcctatgagagcgaccccgcggagtgggccatgtacgccaag 124827573
Query: 421 ttcgaccagtacaggt 436
||||||||||||||||
Sbjct: 124827572 ttcgaccagtacaggt 124827557
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 667 gattccattggcttacatcgagtagagaatatgagtcacacagaacctgctgtgagcctt 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124817581 gattccattggcttacatcgagtagagaatatgagtcacacagaacctgctgtgagcctt 124817522
Query: 727 cacttgtacagtccacccttcgatacgtgccatgcctttgatcaaagaacaggacataaa 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124817521 cacttgtacagtccacccttcgatacgtgccatgcctttgatcaaagaacaggacataaa 124817462
Query: 787 aacaaagtcaccatgacattccatagcaaatttggaatcaggactccacttg 838
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124817461 aacaaagtcaccatgacattccatagcaaatttggaatcaggactccacttg 124817410
Score = 311 bits (157), Expect = 4e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 511 agcagtatccatgatcacaccgactcccactgctttctgaagatgctgcaaggaaatcta 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124822535 agcagtatccatgatcacaccgactcccactgctttctgaagatgctgcaaggaaatcta 124822476
Query: 571 aaggagacattatttgcctggcctgacaaaaaatccaacgagatgatcaagaagtctgaa 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124822475 aaggagacattatttgcctggcctgacaaaaaatccaacgagatgatcaagaagtctgaa 124822416
Query: 631 agaatcttgagggaaaaccagtgtgcctacatcaacg 667
|||||||||||||||||||||||||||||||||||||
Sbjct: 124822415 agaatcttgagggaaaaccagtgtgcctacatcaacg 124822379
Score = 172 bits (87), Expect = 3e-40
Identities = 111/115 (96%), Gaps = 3/115 (2%)
Strand = Plus / Minus
Query: 838 gcaacttcagggtccctggagaacaactaaggagcaccaaaccctctggatgttttactt 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124815786 gcaacttcagggtccctggagaacaactaaggagcaccaaaccctctggatgttttactt 124815727
Query: 898 c-aggtctggtgaaagttttgccatggacgggaa-gctt-ccaccattttctttc 949
| |||||||||||||||||||||||||| ||||| |||| |||||||||||||||
Sbjct: 124815726 caaggtctggtgaaagttttgccatggatgggaaggcttcccaccattttctttc 124815672
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 433 aggtacacccgaaatcttgtggatcaaggaaatggaaaatttaatctaatgattctatgt 492
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Sbjct: 124824421 aggtacacccgaaatcttgtggatcaaggaaatggaaaatttaatctaatgattctatgt 124824362
Query: 493 tggggtgaaggacatggcag 512
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Sbjct: 124824361 tggggtgaaggacatggcag 124824342
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,959,964
Number of extensions: 134
Number of successful extensions: 134
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 5
Length of query: 1100
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1079
Effective length of database: 2,808,413,156
Effective search space: 3030277795324
Effective search space used: 3030277795324
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)