Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013369
(1267 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002942.1| endothelin-3 precursor [Canis lupus familiar... 246 3e-65
Alignment gi|NP_001002956.1| endothelin-1 precursor [Canis lupus familiar... 84 3e-16
Alignment gi|NP_001003002.1| endothelin-2 precursor [Canis lupus familiar... 78 2e-14
>ref|NP_001002942.1| endothelin-3 precursor [Canis lupus familiaris].
Length = 198
Score = 246 bits (629), Expect = 3e-65
Identities = 126/199 (63%), Positives = 137/199 (68%), Gaps = 6/199 (3%)
Frame = +2
Query: 362 MELRLWFLFGLTVTSAAGPVPRPQPGDAGRSGVPRAPSATK------ETMAMVATRGPSP 523
ME LW LFGLTVTSAAG VP PQPGDAG+SGVP P + E +AM A +GPSP
Sbjct: 1 MEPGLWLLFGLTVTSAAGLVPCPQPGDAGKSGVPGTPPTARSEGDIQEPVAMTAVQGPSP 60
Query: 524 RSSGQEQEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCHLDIIWINTPERTVPYG 703
RS QEQE G FGE A+KGGPV RARRCTCFTYKDKECVYYCHLDIIWINTPE+TVPYG
Sbjct: 61 RSPEQEQELGRFGEQASKGGPVHGRARRCTCFTYKDKECVYYCHLDIIWINTPEQTVPYG 120
Query: 704 LSNHRGSVXXXXXXXXXXXXXXXXXXTLRCACAESQDRACVYFCTRTLAARGASRTPETP 883
LSN+RGS T RCAC +SQD AC++FCTRTLA SRT P
Sbjct: 121 LSNYRGSFRGRRSTGLFPQSPQPSKWTQRCACVQSQDSACLHFCTRTLAVSRNSRTATNP 180
Query: 884 DKEAGKPAGRATGGLHPRR 940
DKE +PA R GGL P R
Sbjct: 181 DKEE-EPASRGNGGLRPTR 198
>ref|NP_001002956.1| endothelin-1 precursor [Canis lupus familiaris].
Length = 202
Score = 84.0 bits (206), Expect = 3e-16
Identities = 49/120 (40%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Frame = +2
Query: 488 TMAMVATRG-PSPRSSGQEQEPGPF--GELAAKGGPVR-YRARRCTCFTYKDKECVYYCH 655
++ VA +G P G E GP GE A P R R++RC+C + DKECVY+CH
Sbjct: 9 SLLFVAFQGAPEAAVLGAELSTGPDSRGEKPAPSAPWRPRRSKRCSCSSLMDKECVYFCH 68
Query: 656 LDIIWINTPERTVPYGLSNHRGSVXXXXXXXXXXXXXXXXXXTLRCACAESQDRACVYFC 835
LDIIW+NTPE VPYGL GS RC CA +D+ C FC
Sbjct: 69 LDIIWVNTPEHIVPYGL----GSPSRSKRSLKDLFITKATDHRKRCQCASQKDKKCWTFC 124
>ref|NP_001003002.1| endothelin-2 precursor [Canis lupus familiaris].
Length = 178
Score = 77.8 bits (190), Expect = 2e-14
Identities = 39/100 (39%), Positives = 49/100 (49%)
Frame = +2
Query: 542 QEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCHLDIIWINTPERTVPYGLSNHRG 721
+ P P +A+ R RRC+C ++ DKECVY+CHLDIIW+NTP +T PYGL N
Sbjct: 31 EHPAP----SARARGSHLRPRRCSCSSWLDKECVYFCHLDIIWVNTPGQTAPYGLGN--- 83
Query: 722 SVXXXXXXXXXXXXXXXXXXTLRCACAESQDRACVYFCTR 841
RC C+ D AC FC R
Sbjct: 84 -----------PPRRRRRSLPKRCECSSGGDPACATFCHR 112
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,825,428
Number of extensions: 1919784
Number of successful extensions: 14006
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 13730
Number of HSP's successfully gapped: 3
Length of query: 422
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 317
Effective length of database: 15,374,224
Effective search space: 4873629008
Effective search space used: 4873629008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013369
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013369
(1267 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095449.1| endothelin-3 [Bos taurus]. 218 1e-56
Alignment gi|NP_851353.1| endothelin-1 precursor [Bos taurus]. 80 5e-15
Alignment gi|NP_783645.1| endothelin-2 precursor [Bos taurus]. 77 2e-14
>ref|NP_001095449.1| endothelin-3 [Bos taurus].
Length = 271
Score = 218 bits (554), Expect = 1e-56
Identities = 115/199 (57%), Positives = 130/199 (65%), Gaps = 7/199 (3%)
Frame = +2
Query: 362 MELRLWFLFGLTVTSAAGPVPRPQPGDAGRSGVPRAPSA------TKETMAMVATRGPSP 523
MEL L FLFGL VTSAAG VP PQ GDAGRS +PRAPSA TKET+A +A RGPSP
Sbjct: 1 MELGLCFLFGLAVTSAAGWVPHPQSGDAGRSSMPRAPSAATSEGDTKETVATMAARGPSP 60
Query: 524 RSSGQEQEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCHLDIIWINTPERTVPYG 703
RS +EQ P FG+ A+G PV +RARRCTCFTYKD+ECVYYCHLDIIWINTPERT PYG
Sbjct: 61 RSPWREQGPSQFGKQGAEGVPVHHRARRCTCFTYKDRECVYYCHLDIIWINTPERTAPYG 120
Query: 704 LSNHRGS-VXXXXXXXXXXXXXXXXXXTLRCACAESQDRACVYFCTRTLAARGASRTPET 880
LS++RGS TLRCAC ES D AC+ FCT +LAARG +
Sbjct: 121 LSSYRGSGSRGRRSAGQFPQSPQPVKGTLRCACTESDDDACLQFCTWSLAARGRTAPYGL 180
Query: 881 PDKEAGKPAGRATGGLHPR 937
GR + G P+
Sbjct: 181 SSYRGSGSRGRRSAGQFPQ 199
>ref|NP_851353.1| endothelin-1 precursor [Bos taurus].
Length = 202
Score = 79.7 bits (195), Expect = 5e-15
Identities = 41/93 (44%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 560 GELAAKGGPVR-YRARRCTCFTYKDKECVYYCHLDIIWINTPERTVPYGLSNHRGSVXXX 736
GE A P R R++RC+C + DKECVY+CHLDIIW+NTPE VPYGL GS
Sbjct: 36 GEKPAPATPWRPRRSKRCSCSSLMDKECVYFCHLDIIWVNTPEHVVPYGL----GSPSRS 91
Query: 737 XXXXXXXXXXXXXXXTLRCACAESQDRACVYFC 835
RC CA D+ C FC
Sbjct: 92 KRSLKDFFPTKATVHRKRCQCASQTDKKCWNFC 124
>ref|NP_783645.1| endothelin-2 precursor [Bos taurus].
Length = 177
Score = 77.4 bits (189), Expect = 2e-14
Identities = 39/98 (39%), Positives = 51/98 (52%)
Frame = +2
Query: 542 QEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCHLDIIWINTPERTVPYGLSNHRG 721
++P P A+G +R RRC+C ++ DKECVY+CHLDIIW+NTP +T PYGL N
Sbjct: 30 EQPAPLPR--ARGSHLR--TRRCSCSSWLDKECVYFCHLDIIWVNTPGQTAPYGLGN--- 82
Query: 722 SVXXXXXXXXXXXXXXXXXXTLRCACAESQDRACVYFC 835
RC C ++D AC FC
Sbjct: 83 -----------PPRRRRRSLPRRCECYSARDPACATFC 109
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,599,146
Number of extensions: 1859768
Number of successful extensions: 13422
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 13199
Number of HSP's successfully gapped: 4
Length of query: 422
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,207,134
Effective search space: 4503661478
Effective search space used: 4503661478
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013369
(1267 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092052.1| endothelin-3 precursor [Sus scrofa]. 384 e-107
Alignment gi|NP_999047.1| endothelin-1 preproprotein [Sus scrofa]. 83 4e-16
>ref|NP_001092052.1| endothelin-3 precursor [Sus scrofa].
Length = 204
Score = 384 bits (987), Expect = e-107
Identities = 186/204 (91%), Positives = 186/204 (91%)
Frame = +2
Query: 362 MELRLWFLFGLTVTSAAGPVPRPQPGDAGRSGVPRAPSATKETMAMVATRGPSPRSSGQE 541
MELRLWFLFGLTVTSAAGPVPRPQPGDAGRSGVPRAPSATKETMAMVATRGPSPRSSGQE
Sbjct: 1 MELRLWFLFGLTVTSAAGPVPRPQPGDAGRSGVPRAPSATKETMAMVATRGPSPRSSGQE 60
Query: 542 QEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCHLDIIWINTPERTVPYGLSNHRG 721
QEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCHLDIIWINTPERTVPYGLSNHRG
Sbjct: 61 QEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCHLDIIWINTPERTVPYGLSNHRG 120
Query: 722 SVXXXXXXXXXXXXXXXXXXTLRCACAESQDRACVYFCTRTLAARGASRTPETPDKEAGK 901
SV TLRCACAESQDRACVYFCTRTLAARGASRTPETPDKEAGK
Sbjct: 121 SVRGRRSAGPSPQSSQPSRGTLRCACAESQDRACVYFCTRTLAARGASRTPETPDKEAGK 180
Query: 902 PAGRATGGLHPRRLKSRTDKARRL 973
PAGRATGGLHPRRLKSRTDKARRL
Sbjct: 181 PAGRATGGLHPRRLKSRTDKARRL 204
>ref|NP_999047.1| endothelin-1 preproprotein [Sus scrofa].
Length = 203
Score = 82.8 bits (203), Expect = 4e-16
Identities = 45/124 (36%), Positives = 59/124 (47%)
Frame = +2
Query: 518 SPRSSGQEQEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCHLDIIWINTPERTVP 697
SP + Q + P P + R++RC+C + DKECVY+CHLDIIW+NTPE VP
Sbjct: 29 SPEAESQGETPSPHASWRPR------RSKRCSCSSLMDKECVYFCHLDIIWVNTPEHIVP 82
Query: 698 YGLSNHRGSVXXXXXXXXXXXXXXXXXXTLRCACAESQDRACVYFCTRTLAARGASRTPE 877
YGL GS RC CA +D+ C FC A + R +
Sbjct: 83 YGL----GSPSRSRRSLKDLFPAKAADRRDRCQCASQKDKKCWSFCQ---AGKEIGRDQD 135
Query: 878 TPDK 889
T +K
Sbjct: 136 TMEK 139
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,426,706
Number of extensions: 1214687
Number of successful extensions: 8960
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8830
Number of HSP's successfully gapped: 2
Length of query: 422
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 320
Effective length of database: 8,804,438
Effective search space: 2817420160
Effective search space used: 2817420160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013369
(1267 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031929.1| endothelin-3 precursor [Mus musculus]. 182 4e-46
Alignment gi|NP_034234.1| endothelin-1 precursor [Mus musculus]. 86 8e-17
Alignment gi|NP_031928.2| endothelin-2 precursor [Mus musculus]. 77 4e-14
>ref|NP_031929.1| endothelin-3 precursor [Mus musculus].
Length = 214
Score = 182 bits (463), Expect = 4e-46
Identities = 110/219 (50%), Positives = 125/219 (57%), Gaps = 16/219 (7%)
Frame = +2
Query: 362 MELRLWFLFGLTVTSAAGPVPRPQPGDAGRSGVPRAPSAT------KETMAMVATRGPSP 523
ME LW L GLTVTSAAG VP PQ GD+GR+ V + P +ET+A R SP
Sbjct: 1 MEPGLWLLLGLTVTSAAGLVPCPQSGDSGRASVSQGPPEAGSERGCEETVAGPGERIVSP 60
Query: 524 --------RSSGQEQEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCHLDIIWINT 679
S+GQE+ PG G+ KG P +R RRCTCFTYKDKECVYYCHLDIIWINT
Sbjct: 61 TVALPAQPESAGQERAPGRSGKQEDKGLPAHHRPRRCTCFTYKDKECVYYCHLDIIWINT 120
Query: 680 PERTVPYGLSNHRGSVXXXXXXXXXXXXXXXXXXT-LRCACAESQDRACVYFCTRTLAAR 856
PE+TVPYGLSN+R S+ T LRC C + D+AC +FC RT
Sbjct: 121 PEQTVPYGLSNYRESLRGKRSLGPVPESSQPSPWTRLRCTCMGADDKACAHFCARTRDVT 180
Query: 857 GASRTPETPDKEAGKPAGRATGGLHPR-RLKSRTDKARR 970
S E P E R TGG PR RL SRTDKA R
Sbjct: 181 SYSGRAERPAAE----EMRETGG--PRQRLMSRTDKAHR 213
>ref|NP_034234.1| endothelin-1 precursor [Mus musculus].
Length = 202
Score = 85.5 bits (210), Expect = 8e-17
Identities = 42/107 (39%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Frame = +2
Query: 596 RARRCTCFTYKDKECVYYCHLDIIWINTPERTVPYGLSNHRGSVXXXXXXXXXXXXXXXX 775
R++RC+C + DKECVY+CHLDIIW+NTPER VPYGL G
Sbjct: 49 RSKRCSCSSLMDKECVYFCHLDIIWVNTPERVVPYGL----GGSSRSKRSLKDLLPNKAT 104
Query: 776 XXTLRCACAESQDRACVYFCTRTLAARGASRTPET-PDKEAGKPAGR 913
+RC CA +D+ C FC R S ++ D + GKP +
Sbjct: 105 DQAVRCQCAHQKDKKCWNFCQAGKELRAQSTMQKSLKDSKKGKPCSK 151
>ref|NP_031928.2| endothelin-2 precursor [Mus musculus].
Length = 175
Score = 76.6 bits (187), Expect = 4e-14
Identities = 38/91 (41%), Positives = 46/91 (50%)
Frame = +2
Query: 569 AAKGGPVRYRARRCTCFTYKDKECVYYCHLDIIWINTPERTVPYGLSNHRGSVXXXXXXX 748
A KG R RRC+C ++ DKECVY+CHLDIIW+NT +T PYGL N
Sbjct: 33 APKGRGPHLRFRRCSCNSWLDKECVYFCHLDIIWVNTAGQTAPYGLGN------------ 80
Query: 749 XXXXXXXXXXXTLRCACAESQDRACVYFCTR 841
RC C+ + D AC FC R
Sbjct: 81 --PPRRRRRSLPKRCECSTAGDSACATFCHR 109
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,084,610
Number of extensions: 1485370
Number of successful extensions: 9453
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9295
Number of HSP's successfully gapped: 3
Length of query: 422
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 318
Effective length of database: 12,493,815
Effective search space: 3973033170
Effective search space used: 3973033170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013369
(1267 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_996915.1| endothelin-3 isoform 2 preproprotein [Homo sapi... 206 3e-53
Alignment gi|NP_996917.1| endothelin-3 isoform 1 preproprotein [Homo sapi... 187 4e-50
Alignment gi|NP_000105.1| endothelin-3 isoform 1 preproprotein [Homo sapi... 187 4e-50
Alignment gi|NP_996916.1| endothelin-3 isoform 3 preproprotein [Homo sapi... 179 5e-45
Alignment gi|NP_001947.1| endothelin-2 preproprotein [Homo sapiens]. 84 2e-16
Alignment gi|NP_001946.3| endothelin-1 isoform 1 preproprotein [Homo sapi... 80 5e-15
Alignment gi|NP_001161791.1| endothelin-1 isoform 2 preproprotein [Homo s... 79 1e-14
>ref|NP_996915.1| endothelin-3 isoform 2 preproprotein [Homo sapiens].
Length = 219
Score = 206 bits (525), Expect = 3e-53
Identities = 118/227 (51%), Positives = 133/227 (58%), Gaps = 23/227 (10%)
Frame = +2
Query: 362 MELRLWFLFGLTVTSAAGPVPRPQPGDAGRSGVPRAPSATKE------------------ 487
ME LW LFGLTVTSAAG VP Q GDAGR GV +AP+A +
Sbjct: 1 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 60
Query: 488 ----TMAMVATRGPSPRSSGQEQEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCH 655
T+A A +GPSP S GQEQ AA+G P +R+RRCTCFTYKDKECVYYCH
Sbjct: 61 PGEGTVAPTALQGPSPGSPGQEQ--------AAEGAPEHHRSRRCTCFTYKDKECVYYCH 112
Query: 656 LDIIWINTPERTVPYGLSNHRGSVXXXXXXXXXXXXXXXXXXT-LRCACAESQDRACVYF 832
LDIIWINTPE+TVPYGLSN+RGS LRCAC D+AC++F
Sbjct: 113 LDIIWINTPEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHF 172
Query: 833 CTRTLAARGASRTPETPDKEAGKPAGRATGGLHPRRLKSRTDKARRL 973
CT+TL SRT E DKE A GL RRLKSRT+KA RL
Sbjct: 173 CTQTLDVSSNSRTAEKTDKEEEGKVRGANRGLCQRRLKSRTNKASRL 219
>ref|NP_996917.1| endothelin-3 isoform 1 preproprotein [Homo sapiens].
Length = 238
Score = 187 bits (476), Expect(2) = 4e-50
Identities = 104/200 (52%), Positives = 118/200 (59%), Gaps = 23/200 (11%)
Frame = +2
Query: 362 MELRLWFLFGLTVTSAAGPVPRPQPGDAGRSGVPRAPSATKE------------------ 487
ME LW LFGLTVTSAAG VP Q GDAGR GV +AP+A +
Sbjct: 1 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 60
Query: 488 ----TMAMVATRGPSPRSSGQEQEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCH 655
T+A A +GPSP S GQEQ AA+G P +R+RRCTCFTYKDKECVYYCH
Sbjct: 61 PGEGTVAPTALQGPSPGSPGQEQ--------AAEGAPEHHRSRRCTCFTYKDKECVYYCH 112
Query: 656 LDIIWINTPERTVPYGLSNHRGSVXXXXXXXXXXXXXXXXXXT-LRCACAESQDRACVYF 832
LDIIWINTPE+TVPYGLSN+RGS LRCAC D+AC++F
Sbjct: 113 LDIIWINTPEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHF 172
Query: 833 CTRTLAARGASRTPETPDKE 892
CT+TL SRT E DKE
Sbjct: 173 CTQTLDVSSNSRTAEKTDKE 192
Score = 30.0 bits (66), Expect(2) = 4e-50
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 937 KVEVKDRQSQEALDLPH 987
KVEVKD+QS++ALDL H
Sbjct: 196 KVEVKDQQSKQALDLHH 212
>ref|NP_000105.1| endothelin-3 isoform 1 preproprotein [Homo sapiens].
Length = 238
Score = 187 bits (476), Expect(2) = 4e-50
Identities = 104/200 (52%), Positives = 118/200 (59%), Gaps = 23/200 (11%)
Frame = +2
Query: 362 MELRLWFLFGLTVTSAAGPVPRPQPGDAGRSGVPRAPSATKE------------------ 487
ME LW LFGLTVTSAAG VP Q GDAGR GV +AP+A +
Sbjct: 1 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 60
Query: 488 ----TMAMVATRGPSPRSSGQEQEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCH 655
T+A A +GPSP S GQEQ AA+G P +R+RRCTCFTYKDKECVYYCH
Sbjct: 61 PGEGTVAPTALQGPSPGSPGQEQ--------AAEGAPEHHRSRRCTCFTYKDKECVYYCH 112
Query: 656 LDIIWINTPERTVPYGLSNHRGSVXXXXXXXXXXXXXXXXXXT-LRCACAESQDRACVYF 832
LDIIWINTPE+TVPYGLSN+RGS LRCAC D+AC++F
Sbjct: 113 LDIIWINTPEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHF 172
Query: 833 CTRTLAARGASRTPETPDKE 892
CT+TL SRT E DKE
Sbjct: 173 CTQTLDVSSNSRTAEKTDKE 192
Score = 30.0 bits (66), Expect(2) = 4e-50
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 937 KVEVKDRQSQEALDLPH 987
KVEVKD+QS++ALDL H
Sbjct: 196 KVEVKDQQSKQALDLHH 212
>ref|NP_996916.1| endothelin-3 isoform 3 preproprotein [Homo sapiens].
Length = 224
Score = 179 bits (454), Expect = 5e-45
Identities = 101/201 (50%), Positives = 118/201 (58%), Gaps = 23/201 (11%)
Frame = +2
Query: 362 MELRLWFLFGLTVTSAAGPVPRPQPGDAGRSGVPRAPSATKE------------------ 487
ME LW LFGLTVTSAAG VP Q GDAGR GV +AP+A +
Sbjct: 1 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 60
Query: 488 ----TMAMVATRGPSPRSSGQEQEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCH 655
T+A A +GPSP S GQEQ AA+G P +R+RRCTCFTYKDKECVYYCH
Sbjct: 61 PGEGTVAPTALQGPSPGSPGQEQ--------AAEGAPEHHRSRRCTCFTYKDKECVYYCH 112
Query: 656 LDIIWINTPERTVPYGLSNHRGSVXXXXXXXXXXXXXXXXXXT-LRCACAESQDRACVYF 832
LDIIWINTPE+TVPYGLSN+RGS LRCAC D+AC++F
Sbjct: 113 LDIIWINTPEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHF 172
Query: 833 CTRTLAARGASRTPETPDKEA 895
CT+TL SR E D+++
Sbjct: 173 CTQTL---DVSRQVEVKDQQS 190
>ref|NP_001947.1| endothelin-2 preproprotein [Homo sapiens].
Length = 178
Score = 84.3 bits (207), Expect = 2e-16
Identities = 48/117 (41%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Frame = +2
Query: 596 RARRCTCFTYKDKECVYYCHLDIIWINTPERTVPYGLSNHRGSVXXXXXXXXXXXXXXXX 775
R RRC+C ++ DKECVY+CHLDIIW+NTPE+T PYGL N
Sbjct: 45 RLRRCSCSSWLDKECVYFCHLDIIWVNTPEQTAPYGLGN--------------PPRRRRR 90
Query: 776 XXTLRCACAESQDRACVYFCTR---TLAARGASRTPETPDKEAGKPAGRATGGLHPR 937
RC C+ ++D AC FC R T A SR + GK G TG L R
Sbjct: 91 SLPRRCQCSSARDPACATFCLRRPWTEAGAVPSRKSPADVFQTGK-TGATTGELLQR 146
>ref|NP_001946.3| endothelin-1 isoform 1 preproprotein [Homo sapiens].
Length = 212
Score = 79.7 bits (195), Expect = 5e-15
Identities = 42/117 (35%), Positives = 55/117 (47%)
Frame = +2
Query: 485 ETMAMVATRGPSPRSSGQEQEPGPFGELAAKGGPVRYRARRCTCFTYKDKECVYYCHLDI 664
ET + A + G++ P P L R++RC+C + DKECVY+CHLDI
Sbjct: 20 ETAVLGAELSAVGENGGEKPTPSPPWRLR--------RSKRCSCSSLMDKECVYFCHLDI 71
Query: 665 IWINTPERTVPYGLSNHRGSVXXXXXXXXXXXXXXXXXXTLRCACAESQDRACVYFC 835
IW+NTPE VPYGL + R RC CA +D+ C FC
Sbjct: 72 IWVNTPEHVVPYGLGSPRSK-----RALENLLPTKATDRENRCQCASQKDKKCWNFC 123
>ref|NP_001161791.1| endothelin-1 isoform 2 preproprotein [Homo sapiens].
Length = 211
Score = 78.6 bits (192), Expect = 1e-14
Identities = 39/93 (41%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 560 GELAAKGGPVRYR-ARRCTCFTYKDKECVYYCHLDIIWINTPERTVPYGLSNHRGSVXXX 736
GE P R R ++RC+C + DKECVY+CHLDIIW+NTPE VPYGL + R
Sbjct: 35 GEKPTPSPPWRLRRSKRCSCSSLMDKECVYFCHLDIIWVNTPEHVVPYGLGSPRSK---- 90
Query: 737 XXXXXXXXXXXXXXXTLRCACAESQDRACVYFC 835
RC CA +D+ C FC
Sbjct: 91 -RALENLLPTKATDRENRCQCASQKDKKCWNFC 122
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,287,178
Number of extensions: 1833109
Number of successful extensions: 12207
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 11985
Number of HSP's successfully gapped: 9
Length of query: 422
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,835,944
Effective search space: 4702994248
Effective search space used: 4702994248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013369
(1267 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 684 0.0
Sscrofa_Chr07 62 8e-07
>Sscrofa_Chr17
|| Length = 69701581
Score = 684 bits (345), Expect = 0.0
Identities = 391/414 (94%)
Strand = Plus / Plus
Query: 1 gtgctgggtgcgcgcgggtcgctgcgctcccccgcgcctgggaggcgacccccgtgcgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66846228 gtgctgggtgcgcgcgggtcgctgcgctcccccgcgcctgggaggcgacccccgtgcgcc 66846287
Query: 61 ccgggttcaaaggccccgcgaggcagctccagcctctctnnnnnnnnnnnnnnnnnnnnn 120
|||||||||||||||||||||||||||||||||||||||
Sbjct: 66846288 ccgggttcaaaggccccgcgaggcagctccagcctctctggggggcggggaggcgagggg 66846347
Query: 121 nntggtgcgggagccagaaagcgcgagcccacagccggccagcgctgcgcagggatgggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66846348 ggtggtgcgggagccagaaagcgcgagcccacagccggccagcgctgcgcagggatgggc 66846407
Query: 181 agtgcgctctgaagtttgtgaccgtcgcagccaactcctggccgcagcccgggacgcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66846408 agtgcgctctgaagtttgtgaccgtcgcagccaactcctggccgcagcccgggacgcagc 66846467
Query: 241 gagccagcggccggcctcgaaccgccctccccccagccggagggcgaggccagctgtgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66846468 gagccagcggccggcctcgaaccgccctccccccagccggagggcgaggccagctgtgcc 66846527
Query: 301 cggcgctctttggcggccacaggcgtctgtcctccgctgctctcgcgtccgatccgggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66846528 cggcgctctttggcggccacaggcgtctgtcctccgctgctctcgcgtccgatccgggtt 66846587
Query: 361 catggagctgaggctgtggttccttttcgggctcacagtgacctccgccgcagg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66846588 catggagctgaggctgtggttccttttcgggctcacagtgacctccgccgcagg 66846641
Score = 654 bits (330), Expect = 0.0
Identities = 330/330 (100%)
Strand = Plus / Plus
Query: 938 aggttgaagtcaaggacagacaaagccaggaggctttagaccttccccatcaaacgcctg 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66867486 aggttgaagtcaaggacagacaaagccaggaggctttagaccttccccatcaaacgcctg 66867545
Query: 998 cccaggcagcggcttcccccgcctgctgcctgcccgccttgctcggcctttagggagcct 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66867546 cccaggcagcggcttcccccgcctgctgcctgcccgccttgctcggcctttagggagcct 66867605
Query: 1058 ctgggagaaggccctgcagcaggaaggcctcagtcccggcccgacacggttcacatttcc 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66867606 ctgggagaaggccctgcagcaggaaggcctcagtcccggcccgacacggttcacatttcc 66867665
Query: 1118 acctctttgaggacaaggaatgagttttgcctgggggagaaaagccactcaaaggggcct 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66867666 acctctttgaggacaaggaatgagttttgcctgggggagaaaagccactcaaaggggcct 66867725
Query: 1178 ccctgaacggtgcagcccttcccccaggccggccccatccagagaccctggtttccctaa 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66867726 ccctgaacggtgcagcccttcccccaggccggccccatccagagaccctggtttccctaa 66867785
Query: 1238 tgggtaaaacgatcccagctgtgccctggg 1267
||||||||||||||||||||||||||||||
Sbjct: 66867786 tgggtaaaacgatcccagctgtgccctggg 66867815
Score = 545 bits (275), Expect = e-152
Identities = 275/275 (100%)
Strand = Plus / Plus
Query: 410 gcaggaccggtgcctcgtccccagcctggggacgctggcaggagcggcgtaccccgggcc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66847242 gcaggaccggtgcctcgtccccagcctggggacgctggcaggagcggcgtaccccgggcc 66847301
Query: 470 ccctctgcaaccaaggagaccatggccatggtggcaacgcggggtccaagccccagaagc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66847302 ccctctgcaaccaaggagaccatggccatggtggcaacgcggggtccaagccccagaagc 66847361
Query: 530 tctgggcaggagcaggaaccaggtccatttggggagctggctgccaaggggggccctgtg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66847362 tctgggcaggagcaggaaccaggtccatttggggagctggctgccaaggggggccctgtg 66847421
Query: 590 cgctaccgagcccggcgctgtacgtgtttcacctacaaggacaaggagtgtgtctattat 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66847422 cgctaccgagcccggcgctgtacgtgtttcacctacaaggacaaggagtgtgtctattat 66847481
Query: 650 tgccacctggacatcatctggatcaacactcctga 684
|||||||||||||||||||||||||||||||||||
Sbjct: 66847482 tgccacctggacatcatctggatcaacactcctga 66847516
Score = 347 bits (175), Expect = 9e-93
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 685 acggactgtgccctacggactgtccaaccacagaggcagcgtccggggcaggaggtcagc 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66864192 acggactgtgccctacggactgtccaaccacagaggcagcgtccggggcaggaggtcagc 66864251
Query: 745 cgggccgtccccgcagagctctcagccgtcgagggggaccctgcgctgcgcctgtgcaga 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66864252 cgggccgtccccgcagagctctcagccgtcgagggggaccctgcgctgcgcctgtgcaga 66864311
Query: 805 gagccaggacagagcctgcgtgtacttctgcacccggaccctggctgcccgcggg 859
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66864312 gagccaggacagagcctgcgtgtacttctgcacccggaccctggctgcccgcggg 66864366
Score = 170 bits (86), Expect = 1e-39
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 852 cccgcggggcttccaggacgccagaaacccctgacaaagaagcaggaaagccagcaggca 911
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66865435 cccgcagggcttccaggacgccagaaacccctgacaaagaagcaggaaagccagcaggca 66865494
Query: 912 gggccactggaggcctgcatccgagaaggt 941
||||||||||||||||||||||||||||||
Sbjct: 66865495 gggccactggaggcctgcatccgagaaggt 66865524
>Sscrofa_Chr07
|| Length = 134764511
Score = 61.9 bits (31), Expect = 8e-07
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 635 gagtgtgtctattattgccacctggacatcatctggatcaacactcc 681
||||||||||| | ||||||||||||||||||||| ||||||||||
Sbjct: 9154694 gagtgtgtctacttctgccacctggacatcatctgggtcaacactcc 9154740
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,290,698
Number of extensions: 283
Number of successful extensions: 283
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 7
Length of query: 1267
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1246
Effective length of database: 2,808,413,156
Effective search space: 3499282792376
Effective search space used: 3499282792376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)