Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013372
(1017 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001108082.1| mitochondrial dimethyladenosine transferase ... 540 e-161
Alignment gi|NP_001070364.1| mitochondrial dimethyladenosine transferase ... 414 e-116
Alignment gi|NP_001039501.1| probable dimethyladenosine transferase [Bos ... 79 6e-15
Alignment gi|NP_001033216.1| dimethyladenosine transferase 2, mitochondri... 64 2e-10
>ref|NP_001108082.1| mitochondrial dimethyladenosine transferase 1 isoform 1 [Bos
taurus].
Length = 341
Score = 540 bits (1391), Expect(2) = e-161
Identities = 268/293 (91%), Positives = 283/293 (96%)
Frame = +3
Query: 63 MAVSGPLGTFRLPPLPTIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVY 242
MA S LGTFRLPPLPTIREII+LF+LQAVKQLSQNFLLDLRLTDKIVRKAG+LTNAYVY
Sbjct: 1 MASSRTLGTFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY 60
Query: 243 EVGPGPGGITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA 422
EVGPGPGGITRSILNAG+AELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA
Sbjct: 61 EVGPGPGGITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA 120
Query: 423 FPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEV 602
FPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENVS RNGPFAYGRT+M LTFQKEV
Sbjct: 121 FPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENVSQRNGPFAYGRTRMMLTFQKEV 180
Query: 603 AERLIASKGSKQRSRLSIMAQYLCDVQHVLTIPGRAFVPKPEVDVGVVHFTPLTQPKIEQ 782
AERL A+ GSKQRSRLSIMAQYLCDVQH+LTIPG+AFVPKPEVD GVVHFTPLT+P+I+Q
Sbjct: 181 AERLTATTGSKQRSRLSIMAQYLCDVQHILTIPGQAFVPKPEVDSGVVHFTPLTRPRIKQ 240
Query: 783 PFKLVEKVVQNAFQFRRKYCYRGLGMVFPEAQRMERTGKLLESADVDPTLRPT 941
PFKLVEKVVQNAFQFRRKYC+RGLGM+FPEA+R+E TGKLLE ADVDPTLRPT
Sbjct: 241 PFKLVEKVVQNAFQFRRKYCHRGLGMLFPEARRLESTGKLLELADVDPTLRPT 293
Score = 46.6 bits (109), Expect(2) = e-161
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +2
Query: 923 PYSSTNQLSVSHFQSLCDVYRKMCDED 1003
P QL+VSHF+SLCDVYRKMCDED
Sbjct: 288 PTLRPTQLTVSHFKSLCDVYRKMCDED 314
>ref|NP_001070364.1| mitochondrial dimethyladenosine transferase 1 isoform 2 [Bos
taurus].
Length = 226
Score = 414 bits (1064), Expect = e-116
Identities = 207/222 (93%), Positives = 215/222 (96%)
Frame = +3
Query: 63 MAVSGPLGTFRLPPLPTIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVY 242
MA S LGTFRLPPLPTIREII+LF+LQAVKQLSQNFLLDLRLTDKIVRKAG+LTNAYVY
Sbjct: 1 MASSRTLGTFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY 60
Query: 243 EVGPGPGGITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA 422
EVGPGPGGITRSILNAG+AELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA
Sbjct: 61 EVGPGPGGITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA 120
Query: 423 FPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEV 602
FPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENVS RNGPFAYGRT+M LTFQKEV
Sbjct: 121 FPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENVSQRNGPFAYGRTRMMLTFQKEV 180
Query: 603 AERLIASKGSKQRSRLSIMAQYLCDVQHVLTIPGRAFVPKPE 728
AERL A+ GSKQRSRLSIMAQYLCDVQH+LTIPG+AFVPKPE
Sbjct: 181 AERLTATTGSKQRSRLSIMAQYLCDVQHILTIPGQAFVPKPE 222
>ref|NP_001039501.1| probable dimethyladenosine transferase [Bos taurus].
Length = 313
Score = 79.0 bits (193), Expect = 6e-15
Identities = 64/206 (31%), Positives = 94/206 (45%), Gaps = 2/206 (0%)
Frame = +3
Query: 159 LSQNFLLDLRLTDKIVRKAGSLTNAYVYEVGPGPGGITRSILNAGIAELLVVEKDSRFIP 338
+ Q+ L + + + I+ KA V EVGPG G +T +L +++ E D R +
Sbjct: 34 IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVIACELDPRLVA 92
Query: 339 GLQMLSDAAP--GKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNVHIIGNLPFSVSTPL 512
L P KL+++ GDVL K + F ++ + NLP+ +S+P
Sbjct: 93 ELHKRVQGTPLASKLQVMVGDVL--KADLPFFDAC-------------VANLPYQISSPF 137
Query: 513 IIKWLENVSHRNGPFAYGRTQMTLTFQKEVAERLIASKGSKQRSRLSIMAQYLCDVQHVL 692
+ K L HR PF L FQ+E A RL+A G K RLSI Q L V H++
Sbjct: 138 VFKLL---LHR--PFF---RCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLM 189
Query: 693 TIPGRAFVPKPEVDVGVVHFTPLTQP 770
+ F P P+V+ VV P P
Sbjct: 190 KVGKNNFRPPPKVESSVVRIEPKNPP 215
>ref|NP_001033216.1| dimethyladenosine transferase 2, mitochondrial [Bos taurus].
Length = 394
Score = 63.9 bits (154), Expect = 2e-10
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 16/185 (8%)
Frame = +3
Query: 207 RKAGSLTNAYVYEVGPGPGGITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIV 386
RKAG L + E PGPG +TR++L +G A ++ +E D FIP L+ L ++ G+L ++
Sbjct: 92 RKAGQL----ILECNPGPGVLTRALLESG-ARVIALESDKNFIPELKSLGNSVNGRLEVI 146
Query: 387 HGD---------------VLTFKIERAFPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIK 521
+ D V+T + + W+ P + ++G LP + K
Sbjct: 147 YCDFFKLDPRNHGMVTPPVMTSDMLFQYLGVKAHPWKKGFP-LKVVGILPAKTERNTLWK 205
Query: 522 WLENVSHRNGPFAYGRTQMTLTFQKEVAERLIASKGSKQ-RSRLSIMAQYLCDVQHVLTI 698
L ++ + + YGR ++ L ++ +L A+ + LS++ Q C ++ + T
Sbjct: 206 ILHDLYSCSSVYKYGRAELNLFISEKECRKLTANPQTPALYQSLSVLGQTACGIKVLCTE 265
Query: 699 PGRAF 713
P F
Sbjct: 266 PSSLF 270
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,920,094
Number of extensions: 1107273
Number of successful extensions: 3555
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3551
Number of HSP's successfully gapped: 5
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013372
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013372
(1017 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533459.2| PREDICTED: similar to transcription factor B1, ... 524 e-156
Alignment gi|XP_535250.2| PREDICTED: similar to Probable dimethyladenosin... 63 4e-10
Alignment gi|XP_537224.2| PREDICTED: similar to transcription factor B2, ... 55 8e-08
>ref|XP_533459.2| PREDICTED: similar to transcription factor B1, mitochondrial [Canis
familiaris].
Length = 345
Score = 524 bits (1349), Expect(2) = e-156
Identities = 259/293 (88%), Positives = 275/293 (93%)
Frame = +3
Query: 63 MAVSGPLGTFRLPPLPTIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVY 242
MA SG L TFRLPPLPTIREII+LF+L A KQLSQNFLLDLRLTDKIVRKAG+LTNAYVY
Sbjct: 1 MAASGTLSTFRLPPLPTIREIIKLFRLHAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY 60
Query: 243 EVGPGPGGITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA 422
EVGPGPGGITRSILNA +AELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA
Sbjct: 61 EVGPGPGGITRSILNANVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA 120
Query: 423 FPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEV 602
FPE LKR WEDDPPNVHIIGNLPFSVSTPLIIKWLENVS R+GPF YGRT+MTLTFQKEV
Sbjct: 121 FPEILKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENVSCRDGPFVYGRTRMTLTFQKEV 180
Query: 603 AERLIASKGSKQRSRLSIMAQYLCDVQHVLTIPGRAFVPKPEVDVGVVHFTPLTQPKIEQ 782
AERL A+ GSKQRSRLSIMAQYLC+VQH+LTIPG+AFVPKPEVDVGVVHFTPL +P+IEQ
Sbjct: 181 AERLTANTGSKQRSRLSIMAQYLCNVQHILTIPGQAFVPKPEVDVGVVHFTPLVRPRIEQ 240
Query: 783 PFKLVEKVVQNAFQFRRKYCYRGLGMVFPEAQRMERTGKLLESADVDPTLRPT 941
PFKLVEKVVQN FQFRRKYCYRGLGM+FP+ R+E TGKLLE ADVDPTLRP+
Sbjct: 241 PFKLVEKVVQNTFQFRRKYCYRGLGMLFPQIHRVESTGKLLELADVDPTLRPS 293
Score = 48.1 bits (113), Expect(2) = e-156
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +2
Query: 923 PYSSTNQLSVSHFQSLCDVYRKMCDED 1003
P +QLSVSHF+SLCDVYRKMCDED
Sbjct: 288 PTLRPSQLSVSHFKSLCDVYRKMCDED 314
>ref|XP_535250.2| PREDICTED: similar to Probable dimethyladenosine transferase
(S-adenosylmethionine-6-N,N-adenosyl(rRNA)
dimethyltransferase) (18S rRNA dimethylase) (HUSSY-05)
[Canis familiaris].
Length = 201
Score = 63.2 bits (152), Expect = 4e-10
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 2/182 (1%)
Frame = +3
Query: 159 LSQNFLLDLRLTDKIVRKAGSLTNAYVYEVGPGPGGITRSILNAGIAELLVVEKDSRFI- 335
+ Q+ L + + + I+ KA V EVGPG G +T +L + +++ E D R +
Sbjct: 34 IGQHILKNPLVVNSIIDKAALGPTDVVLEVGPGTGNMTVELLEK-VKKVIARELDPRLVA 92
Query: 336 -PGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNVHIIGNLPFSVSTPL 512
P ++ KL+++ GDVL K + F ++ + NLP+ +S+P
Sbjct: 93 EPHKRVQGTPLASKLQVLVGDVL--KTDLPFFDAC-------------VANLPYQISSPF 137
Query: 513 IIKWLENVSHRNGPFAYGRTQMTLTFQKEVAERLIASKGSKQRSRLSIMAQYLCDVQHVL 692
+ K L HR PF L FQ+E A RL+A G K RLSI Q L V H++
Sbjct: 138 VFKLL---LHR--PFF---RCAVLMFQREFALRLVAMPGDKLYCRLSINIQLLARVDHLM 189
Query: 693 TI 698
+
Sbjct: 190 KV 191
>ref|XP_537224.2| PREDICTED: similar to transcription factor B2, mitochondrial
isoform 1 [Canis familiaris].
Length = 401
Score = 55.5 bits (132), Expect = 8e-08
Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Frame = +3
Query: 243 EVGPGPGGITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIE-R 419
E PGPG +T ++L + A+++ +E + F+P LQ L G+L +++ D FK++ R
Sbjct: 101 ECNPGPGILTEALLKSK-AKVIALESNRNFLPHLQSLRKKVDGELEVIYCDF--FKMDPR 157
Query: 420 AF---------PESLKRQ-------WEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRNG 551
F E+L + W +D P + ++G P ++ K L ++
Sbjct: 158 NFGIVKPPIMISETLFQHLGIAAVPWSEDTP-LRVVGIFPAKNEKKILWKLLYDLYSSTS 216
Query: 552 PFAYGRTQMTLTFQKEVAERLIASKGSKQRSR-LSIMAQYLCDVQHVLTIPGRAF 713
++YGR Q+ + + E+L+AS + + LS++ Q C ++ + P +F
Sbjct: 217 VYSYGRVQLNMFITEREYEKLVASPETPHLYQVLSVLWQVACKIKLLHVEPWSSF 271
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,793,221
Number of extensions: 1144398
Number of successful extensions: 3844
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3836
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013372
(1017 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001121947.1| dimethyladenosine transferase 1, mitochondri... 580 e-174
Alignment gi|XP_003362099.1| PREDICTED: probable dimethyladenosine transf... 77 1e-14
Alignment gi|XP_003362098.1| PREDICTED: probable dimethyladenosine transf... 77 1e-14
>ref|NP_001121947.1| dimethyladenosine transferase 1, mitochondrial [Sus scrofa].
Length = 340
Score = 580 bits (1494), Expect(2) = e-174
Identities = 291/293 (99%), Positives = 292/293 (99%)
Frame = +3
Query: 63 MAVSGPLGTFRLPPLPTIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVY 242
MAVSGPLGTFRLPPLPTIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVY
Sbjct: 1 MAVSGPLGTFRLPPLPTIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVY 60
Query: 243 EVGPGPGGITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA 422
EVGPGPGGITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA
Sbjct: 61 EVGPGPGGITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA 120
Query: 423 FPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEV 602
FPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEV
Sbjct: 121 FPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEV 180
Query: 603 AERLIASKGSKQRSRLSIMAQYLCDVQHVLTIPGRAFVPKPEVDVGVVHFTPLTQPKIEQ 782
AERLIASKGSKQRSRLSIMAQYLC VQHVLTIPGRAFVPKPEVDVGVVHFTPLTQPKIEQ
Sbjct: 181 AERLIASKGSKQRSRLSIMAQYLCGVQHVLTIPGRAFVPKPEVDVGVVHFTPLTQPKIEQ 240
Query: 783 PFKLVEKVVQNAFQFRRKYCYRGLGMVFPEAQRMERTGKLLESADVDPTLRPT 941
PFKLVEKVVQNAFQFRRKYCYRGLGM+FPEAQRMERTGKLLESADVDPTLRPT
Sbjct: 241 PFKLVEKVVQNAFQFRRKYCYRGLGMLFPEAQRMERTGKLLESADVDPTLRPT 293
Score = 49.3 bits (116), Expect(2) = e-174
Identities = 22/27 (81%), Positives = 22/27 (81%)
Frame = +2
Query: 923 PYSSTNQLSVSHFQSLCDVYRKMCDED 1003
P QLSVSHFQSLCDVYRKMCDED
Sbjct: 288 PTLRPTQLSVSHFQSLCDVYRKMCDED 314
>ref|XP_003362099.1| PREDICTED: probable dimethyladenosine transferase-like isoform 2
[Sus scrofa].
Length = 240
Score = 77.4 bits (189), Expect = 1e-14
Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 2/206 (0%)
Frame = +3
Query: 159 LSQNFLLDLRLTDKIVRKAGSLTNAYVYEVGPGPGGITRSILNAGIAELLVVEKDSRFIP 338
+ Q+ L + + + I+ KA V EVGPG G +T +L +++ E D R +
Sbjct: 34 IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVIACELDPRLVA 92
Query: 339 GLQMLSDAAP--GKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNVHIIGNLPFSVSTPL 512
L P +L+++ GDVL K + F ++ + NLP+ +S+P
Sbjct: 93 ELHKRVQGTPLASRLQVMVGDVL--KTDLPFFDAC-------------VANLPYQISSPF 137
Query: 513 IIKWLENVSHRNGPFAYGRTQMTLTFQKEVAERLIASKGSKQRSRLSIMAQYLCDVQHVL 692
+ K L HR PF L FQ+E A RL+A G K RLSI Q L V H++
Sbjct: 138 VFKLL---LHR--PFF---RCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLM 189
Query: 693 TIPGRAFVPKPEVDVGVVHFTPLTQP 770
+ F P P+V+ VV P P
Sbjct: 190 KVGKNNFRPPPKVESSVVRIEPKNPP 215
>ref|XP_003362098.1| PREDICTED: probable dimethyladenosine transferase-like isoform 1
[Sus scrofa].
Length = 313
Score = 77.4 bits (189), Expect = 1e-14
Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 2/206 (0%)
Frame = +3
Query: 159 LSQNFLLDLRLTDKIVRKAGSLTNAYVYEVGPGPGGITRSILNAGIAELLVVEKDSRFIP 338
+ Q+ L + + + I+ KA V EVGPG G +T +L +++ E D R +
Sbjct: 34 IGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVIACELDPRLVA 92
Query: 339 GLQMLSDAAP--GKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNVHIIGNLPFSVSTPL 512
L P +L+++ GDVL K + F ++ + NLP+ +S+P
Sbjct: 93 ELHKRVQGTPLASRLQVMVGDVL--KTDLPFFDAC-------------VANLPYQISSPF 137
Query: 513 IIKWLENVSHRNGPFAYGRTQMTLTFQKEVAERLIASKGSKQRSRLSIMAQYLCDVQHVL 692
+ K L HR PF L FQ+E A RL+A G K RLSI Q L V H++
Sbjct: 138 VFKLL---LHR--PFF---RCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLM 189
Query: 693 TIPGRAFVPKPEVDVGVVHFTPLTQP 770
+ F P P+V+ VV P P
Sbjct: 190 KVGKNNFRPPPKVESSVVRIEPKNPP 215
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,336,720
Number of extensions: 707711
Number of successful extensions: 2399
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2392
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013372
(1017 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666186.1| dimethyladenosine transferase 1, mitochondrial ... 512 e-151
Alignment gi|NP_079723.1| probable dimethyladenosine transferase [Mus mus... 79 4e-15
Alignment gi|NP_032275.2| dimethyladenosine transferase 2, mitochondrial ... 57 2e-08
>ref|NP_666186.1| dimethyladenosine transferase 1, mitochondrial [Mus musculus].
Length = 345
Score = 512 bits (1319), Expect(2) = e-151
Identities = 248/293 (84%), Positives = 277/293 (94%)
Frame = +3
Query: 63 MAVSGPLGTFRLPPLPTIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVY 242
MA SG LGTFRLPPLPTIREII+LF L+AVKQLSQNFLLDLRLTDKIVRKAGSL + YVY
Sbjct: 1 MAASGKLGTFRLPPLPTIREIIKLFGLRAVKQLSQNFLLDLRLTDKIVRKAGSLADVYVY 60
Query: 243 EVGPGPGGITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA 422
EVGPGPGGITRSILNA +AELLVVEKD+RFIPGLQMLSDAAPGKLRIVHGDVLT+KIE+A
Sbjct: 61 EVGPGPGGITRSILNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKA 120
Query: 423 FPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEV 602
FP +++RQWEDDPPNVHIIGNLPFSVSTPLIIKWLEN+S ++GPF YGRT+MTLTFQKEV
Sbjct: 121 FPGNIRRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENISLKDGPFVYGRTKMTLTFQKEV 180
Query: 603 AERLIASKGSKQRSRLSIMAQYLCDVQHVLTIPGRAFVPKPEVDVGVVHFTPLTQPKIEQ 782
AERL+A+ GSKQ SRLSIMAQYLC+V+H+ TIPG+AFVPKP+VDVGVVH TPL +PKI+Q
Sbjct: 181 AERLVATTGSKQHSRLSIMAQYLCNVEHLFTIPGKAFVPKPKVDVGVVHLTPLIEPKIKQ 240
Query: 783 PFKLVEKVVQNAFQFRRKYCYRGLGMVFPEAQRMERTGKLLESADVDPTLRPT 941
PFKLVEKVVQNAFQFRRKYC+RGLGM+FPEAQR+E TG+LL+ AD+DPTLRPT
Sbjct: 241 PFKLVEKVVQNAFQFRRKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPT 293
Score = 42.7 bits (99), Expect(2) = e-151
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +2
Query: 923 PYSSTNQLSVSHFQSLCDVYRKMCDED 1003
P LS+ HF+SLCDVYRKMCDED
Sbjct: 288 PTLRPTHLSLMHFKSLCDVYRKMCDED 314
>ref|NP_079723.1| probable dimethyladenosine transferase [Mus musculus].
Length = 313
Score = 79.3 bits (194), Expect = 4e-15
Identities = 68/220 (30%), Positives = 96/220 (43%), Gaps = 2/220 (0%)
Frame = +3
Query: 117 REIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVYEVGPGPGGITRSILNAGI 296
RE+ R L + Q+ L + + + I+ KA V EVGPG G +T +L
Sbjct: 20 RELKRAGGLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA- 78
Query: 297 AELLVVEKDSRFIPGLQMLSDAAP--GKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNV 470
+++ E D R + L P KL+++ GDVL D P
Sbjct: 79 KKVVACELDPRLVAELHKRVQGTPLASKLQVLVGDVLK---------------SDLPFFD 123
Query: 471 HIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEVAERLIASKGSKQRSRL 650
+ NLP+ +S+P + K L HR PF L FQ+E A RL+A G K RL
Sbjct: 124 ACVANLPYQISSPFVFKLL---LHR--PFF---RCAILMFQREFALRLVAKPGDKLYCRL 175
Query: 651 SIMAQYLCDVQHVLTIPGRAFVPKPEVDVGVVHFTPLTQP 770
SI Q L V H++ + F P P+V+ VV P P
Sbjct: 176 SINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPP 215
>ref|NP_032275.2| dimethyladenosine transferase 2, mitochondrial [Mus musculus].
Length = 396
Score = 57.0 bits (136), Expect = 2e-08
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Frame = +3
Query: 237 VYEVGPGPGGITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIE 416
+ E PGPG +T ++L AG A ++ E + FIP L+ L G+L++VH D FK++
Sbjct: 98 ILECNPGPGILTGALLKAG-ARVVAFESEKTFIPHLEPLQRNMDGELQVVHCDF--FKMD 154
Query: 417 RAFPESLKRQ----------------WEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRN 548
+ E ++ W P + + G LP+ ++ K L ++
Sbjct: 155 PRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVP-IKVFGILPYKHERRILWKILFDLYSCE 213
Query: 549 GPFAYGRTQMTLTFQKEVAERLIAS-KGSKQRSRLSIMAQYLCDVQHVLTIPGRAF 713
+ YGR ++ + ++ +LIA+ K ++++ Q CDV+ + P +F
Sbjct: 214 SIYRYGRVELNMFVSEKEFRKLIATPKRPDLYQVMAVLWQVACDVKFLHMEPWSSF 269
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,690,161
Number of extensions: 950186
Number of successful extensions: 3040
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3036
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013372
(1017 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057104.2| dimethyladenosine transferase 1, mitochondrial ... 515 e-153
Alignment gi|NP_055288.1| probable dimethyladenosine transferase [Homo sa... 78 1e-14
Alignment gi|NP_071761.1| dimethyladenosine transferase 2, mitochondrial ... 54 2e-07
>ref|NP_057104.2| dimethyladenosine transferase 1, mitochondrial [Homo sapiens].
Length = 346
Score = 515 bits (1326), Expect(2) = e-153
Identities = 253/292 (86%), Positives = 273/292 (93%)
Frame = +3
Query: 63 MAVSGPLGTFRLPPLPTIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVY 242
MA SG L T RLPPLPTIREII+L +LQA KQLSQNFLLDLRLTDKIVRKAG+LTNAYVY
Sbjct: 1 MAASGKLSTCRLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY 60
Query: 243 EVGPGPGGITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA 422
EVGPGPGGITRSILNA +AELLVVEKD+RFIPGLQMLSDAAPGKLRIVHGDVLTFK+E+A
Sbjct: 61 EVGPGPGGITRSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKA 120
Query: 423 FPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTFQKEV 602
F ESLKR WEDDPPNVHIIGNLPFSVSTPLIIKWLEN+S R+GPF YGRTQMTLTFQKEV
Sbjct: 121 FSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEV 180
Query: 603 AERLIASKGSKQRSRLSIMAQYLCDVQHVLTIPGRAFVPKPEVDVGVVHFTPLTQPKIEQ 782
AERL A+ GSKQRSRLS+MAQYLC+V+H+ TIPG+AFVPKPEVDVGVVHFTPL QPKIEQ
Sbjct: 181 AERLAANTGSKQRSRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQ 240
Query: 783 PFKLVEKVVQNAFQFRRKYCYRGLGMVFPEAQRMERTGKLLESADVDPTLRP 938
PFKLVEKVVQN FQFRRKYC+RGL M+FPEAQR+E TG+LLE AD+DPTLRP
Sbjct: 241 PFKLVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRP 292
Score = 47.4 bits (111), Expect(2) = e-153
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +2
Query: 923 PYSSTNQLSVSHFQSLCDVYRKMCDED 1003
P QLS+SHF+SLCDVYRKMCDED
Sbjct: 288 PTLRPRQLSISHFKSLCDVYRKMCDED 314
>ref|NP_055288.1| probable dimethyladenosine transferase [Homo sapiens].
Length = 313
Score = 77.8 bits (190), Expect = 1e-14
Identities = 64/206 (31%), Positives = 94/206 (45%), Gaps = 2/206 (0%)
Frame = +3
Query: 159 LSQNFLLDLRLTDKIVRKAGSLTNAYVYEVGPGPGGITRSILNAGIAELLVVEKDSRFIP 338
+ Q+ L + + + I+ KA V EVGPG G +T +L +++ E D R +
Sbjct: 34 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVA 92
Query: 339 GLQMLSDAAP--GKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNVHIIGNLPFSVSTPL 512
L P KL+++ GDVL K + F ++ + NLP+ +S+P
Sbjct: 93 ELHKRVQGTPVASKLQVLVGDVL--KTDLPFFDTC-------------VANLPYQISSPF 137
Query: 513 IIKWLENVSHRNGPFAYGRTQMTLTFQKEVAERLIASKGSKQRSRLSIMAQYLCDVQHVL 692
+ K L HR PF L FQ+E A RL+A G K RLSI Q L V H++
Sbjct: 138 VFKLL---LHR--PFF---RCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLM 189
Query: 693 TIPGRAFVPKPEVDVGVVHFTPLTQP 770
+ F P P+V+ VV P P
Sbjct: 190 KVGKNNFRPPPKVESSVVRIEPKNPP 215
>ref|NP_071761.1| dimethyladenosine transferase 2, mitochondrial [Homo sapiens].
Length = 396
Score = 54.3 bits (129), Expect = 2e-07
Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Frame = +3
Query: 243 EVGPGPGGITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERA 422
E PGPG +T+++L AG A+++ +E D FIP L+ L GKLR++H D FK++
Sbjct: 101 ECNPGPGILTQALLEAG-AKVVALESDKTFIPHLESLGKNLDGKLRVIHCDF--FKLDPR 157
Query: 423 FPESLKR-----------------QWEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRNG 551
+K W D P + ++G P + K ++
Sbjct: 158 SGGVIKPPAMSSRGLFKNLGIEAVPWTADIP-LKVVGMFPSRGEKRALWKLAYDLYSCTS 216
Query: 552 PFAYGRTQMTLTFQKEVAERLIASKGSKQRSR-LSIMAQYLCDVQHVLTIPGRAF 713
+ +GR ++ + ++ ++L+A G+ LS++ Q C+++ + P +F
Sbjct: 217 IYKFGRIEVNMFIGEKEFQKLMADPGNPDLYHVLSVIWQLACEIKVLHMEPWSSF 271
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,026,665
Number of extensions: 1128583
Number of successful extensions: 3519
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3517
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013372
(1017 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893219.2| Sus scrofa unplaced genomic scaffold ChrUScaf1104 303 1e-79
Sscrofa_Chr01 303 1e-79
>gb|GL893219.2| Sus scrofa unplaced genomic scaffold ChrUScaf1104
Length = 87304
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 456 gatcctccaaatgtacatattattggaaatctgccttttagtgtatcaactccactgatt 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74435 gatcctccaaatgtacatattattggaaatctgccttttagtgtatcaactccactgatt 74494
Query: 516 attaagtggcttgaaaacgtttctcatagaaatggaccttttgcttatggcagaacccag 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74495 attaagtggcttgaaaacgtttctcatagaaatggaccttttgcttatggcagaacccag 74554
Query: 576 atgacactgacttttcagaaggaagtggcagag 608
|||||||||||||||||||||||||||||||||
Sbjct: 74555 atgacactgacttttcagaaggaagtggcagag 74587
Score = 299 bits (151), Expect = 2e-78
Identities = 154/155 (99%)
Strand = Plus / Plus
Query: 193 cagataaaattgtaaggaaagctggcagtctgacaaatgcttatgtttatgaagtgggcc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56991 cagataaaattgtaaggaaagctggcagtctgacaaatgcttatgtttatgaagtgggcc 57050
Query: 253 ctgggcctggtggaatcacaagatccattctcaatgctggtattgctgaacttctggtgg 312
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57051 ctgggcctggcggaatcacaagatccattctcaatgctggtattgctgaacttctggtgg 57110
Query: 313 ttgaaaaggatagtcggtttattcctggattacag 347
|||||||||||||||||||||||||||||||||||
Sbjct: 57111 ttgaaaaggatagtcggtttattcctggattacag 57145
Score = 240 bits (121), Expect = 1e-60
Identities = 124/125 (99%)
Strand = Plus / Plus
Query: 607 agagacttatagccagtaaaggaagcaagcagcgtagtcgtctttccatcatggcccagt 666
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 84216 agagacttatagccagtaagggaagcaagcagcgtagtcgtctttccatcatggcccagt 84275
Query: 667 acctctgcgacgttcagcacgtcttgacaattccaggtcgggcttttgtccccaaaccag 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84276 acctctgcgacgttcagcacgtcttgacaattccaggtcgggcttttgtccccaaaccag 84335
Query: 727 aggtg 731
|||||
Sbjct: 84336 aggtg 84340
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 346 agatgctttctgatgcagcacctggaaaactgagaattgtccatggagatgtgttgacat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72977 agatgctttctgatgcagcacctggaaaactgagaattgtccatggagatgtgttgacat 73036
Query: 406 ttaagatagaaagggcttttccagaaagtctcaaaagacagtgggaggatg 456
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73037 ttaagatagaaagggcttttccagaaagtctcaaaagacagtgggaggatg 73087
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 2 attttgagaacggcggggaaaagctcgcgtgaggtttgtagcgctcggccggctgcggcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54084 attttgagaacggcggggaaaagctcgcgtgaggtttgtagcgctcggccggctgcggcc 54143
Query: 62 catggctgtctccgggccgctcggcactttccgtctcccgccgttgcc 109
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54144 catggctgtctccgggccgctcggcactttccgtctcccgccgttgcc 54191
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 140 actgcaagcagtgaagcagctatcccagaattttctcttggacttgaggctaacag 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54292 actgcaagcagtgaagcagctatcccagaattttctcttggacttgaggctaacag 54347
>Sscrofa_Chr01
|| Length = 315321322
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 456 gatcctccaaatgtacatattattggaaatctgccttttagtgtatcaactccactgatt 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13560361 gatcctccaaatgtacatattattggaaatctgccttttagtgtatcaactccactgatt 13560420
Query: 516 attaagtggcttgaaaacgtttctcatagaaatggaccttttgcttatggcagaacccag 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13560421 attaagtggcttgaaaacgtttctcatagaaatggaccttttgcttatggcagaacccag 13560480
Query: 576 atgacactgacttttcagaaggaagtggcagag 608
|||||||||||||||||||||||||||||||||
Sbjct: 13560481 atgacactgacttttcagaaggaagtggcagag 13560513
Score = 278 bits (140), Expect = 6e-72
Identities = 160/164 (97%), Gaps = 2/164 (1%)
Strand = Plus / Plus
Query: 856 gaatggtattccctgaagctcagcgcatggaacgcactgggaaactgttagagtcggcgg 915
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13622227 gaatgttattccctgaagctcagcgcatggaacgcactgggaaactgttagagtcggcgg 13622286
Query: 916 acgtggaccctactcttcga-ccaaccagctctcggtctctcatttccagagcctctgtg 974
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 13622287 acgtggaccctactcttcgacccacccagctctcggtctctcatttccagagcctctgtg 13622346
Query: 975 acgtgtaccggaaaatgtgtgatgaaga-ccacacctctttgct 1017
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 13622347 acgtgtaccggaaaatgtgtgatgaagacccacacctctttgct 13622390
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 727 aggtggatgtgggggtggtgcactttacccccctgactcagcccaagatagagcagccgt 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13613934 aggtggatgtgggggtggtgcactttacccccctgactcagcccaagatagagcagccgt 13613993
Query: 787 tcaagctggtggagaaagtggttcagaatgcatttcagttccgaaggaaatactgctatc 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13613994 tcaagctggtggagaaagtggttcagaatgcatttcagttccgaaggaaatactgctatc 13614053
Query: 847 gagggcttgg 856
||||||||||
Sbjct: 13614054 gagggcttgg 13614063
Score = 240 bits (121), Expect = 1e-60
Identities = 124/125 (99%)
Strand = Plus / Plus
Query: 607 agagacttatagccagtaaaggaagcaagcagcgtagtcgtctttccatcatggcccagt 666
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 13570079 agagacttatagccagtaagggaagcaagcagcgtagtcgtctttccatcatggcccagt 13570138
Query: 667 acctctgcgacgttcagcacgtcttgacaattccaggtcgggcttttgtccccaaaccag 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13570139 acctctgcgacgttcagcacgtcttgacaattccaggtcgggcttttgtccccaaaccag 13570198
Query: 727 aggtg 731
|||||
Sbjct: 13570199 aggtg 13570203
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 346 agatgctttctgatgcagcacctggaaaactgagaattgtccatggagatgtgttgacat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13558903 agatgctttctgatgcagcacctggaaaactgagaattgtccatggagatgtgttgacat 13558962
Query: 406 ttaagatagaaagggcttttccagaaagtctcaaaagacagtgggaggatg 456
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13558963 ttaagatagaaagggcttttccagaaagtctcaaaagacagtgggaggatg 13559013
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,247,962
Number of extensions: 197
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 11
Length of query: 1017
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 996
Effective length of database: 2,808,413,156
Effective search space: 2797179503376
Effective search space used: 2797179503376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)