Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013373
(1054 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532035.2| PREDICTED: similar to hydroxysteroid dehydrogen... 478 e-135
Alignment gi|XP_853611.1| PREDICTED: similar to hydroxysteroid dehydrogen... 477 e-135
Alignment gi|NP_001186059.1| hydroxysteroid dehydrogenase-like protein 2 ... 474 e-134
Alignment gi|XP_532163.2| PREDICTED: similar to hydroxysteroid dehydrogen... 401 e-112
Alignment gi|XP_867654.1| PREDICTED: similar to hydroxysteroid dehydrogen... 227 1e-59
Alignment gi|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (... 49 8e-06
>ref|XP_532035.2| PREDICTED: similar to hydroxysteroid dehydrogenase like 2 isoform 1
[Canis familiaris].
Length = 417
Score = 478 bits (1229), Expect = e-135
Identities = 237/291 (81%), Positives = 253/291 (86%)
Frame = +1
Query: 142 MLPNTGRLAGCTVFITGASRXXXXXXXXXXXXXXXNVVIAAKTTQTHPKLQGTIYTAAEE 321
MLPNTG+LAGCTVFITGASR N+VIAAKTT HPKL GTI+TAAEE
Sbjct: 1 MLPNTGKLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTHAHPKLPGTIFTAAEE 60
Query: 322 IQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRVDL 501
I+AAGGKALPC VDVRDEQQIS+AVEKAVE+FGGIDILVNNASAISLTNTLETPTKRVDL
Sbjct: 61 IEAAGGKALPCSVDVRDEQQISNAVEKAVERFGGIDILVNNASAISLTNTLETPTKRVDL 120
Query: 502 MMNVNTRGTYLTSKACIPYLKKSRIAHIXXXXXXXXXXXXWFKQHCAYTIAKYGMSMCVL 681
MMNVNTRGTYLTSKACIPYLKKS+IAHI WFKQHCAYTIAKYGMSMCVL
Sbjct: 121 MMNVNTRGTYLTSKACIPYLKKSKIAHILNLSPPLNLNPMWFKQHCAYTIAKYGMSMCVL 180
Query: 682 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVDIIADAAYCIFKKPKSFTG 861
GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKV+IIADAAY IFK+PKSFTG
Sbjct: 181 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVEIIADAAYSIFKRPKSFTG 240
Query: 862 NFIIDENILKEEGITNFDVYAVTPGHPLLPDFFLDEQPETVIKKMESHGAD 1014
NFIIDENIL+EEGI NFD+YA+ PGHPLLPDFFLDE P+ +IKK ES G++
Sbjct: 241 NFIIDENILREEGIKNFDIYAIKPGHPLLPDFFLDEHPDIIIKKAESRGSN 291
>ref|XP_853611.1| PREDICTED: similar to hydroxysteroid dehydrogenase like 2 isoform 2
[Canis familiaris].
Length = 418
Score = 477 bits (1227), Expect = e-135
Identities = 237/289 (82%), Positives = 251/289 (86%)
Frame = +1
Query: 142 MLPNTGRLAGCTVFITGASRXXXXXXXXXXXXXXXNVVIAAKTTQTHPKLQGTIYTAAEE 321
MLPNTG+LAGCTVFITGASR N+VIAAKTT HPKL GTI+TAAEE
Sbjct: 1 MLPNTGKLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTHAHPKLPGTIFTAAEE 60
Query: 322 IQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRVDL 501
I+AAGGKALPC VDVRDEQQIS+AVEKAVE+FGGIDILVNNASAISLTNTLETPTKRVDL
Sbjct: 61 IEAAGGKALPCSVDVRDEQQISNAVEKAVERFGGIDILVNNASAISLTNTLETPTKRVDL 120
Query: 502 MMNVNTRGTYLTSKACIPYLKKSRIAHIXXXXXXXXXXXXWFKQHCAYTIAKYGMSMCVL 681
MMNVNTRGTYLTSKACIPYLKKS+IAHI WFKQHCAYTIAKYGMSMCVL
Sbjct: 121 MMNVNTRGTYLTSKACIPYLKKSKIAHILNLSPPLNLNPMWFKQHCAYTIAKYGMSMCVL 180
Query: 682 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVDIIADAAYCIFKKPKSFTG 861
GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKV+IIADAAY IFK+PKSFTG
Sbjct: 181 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVEIIADAAYSIFKRPKSFTG 240
Query: 862 NFIIDENILKEEGITNFDVYAVTPGHPLLPDFFLDEQPETVIKKMESHG 1008
NFIIDENIL+EEGI NFD+YA+ PGHPLLPDFFLDE P+ +IKK ES G
Sbjct: 241 NFIIDENILREEGIKNFDIYAIKPGHPLLPDFFLDEHPDIIIKKAESRG 289
>ref|NP_001186059.1| hydroxysteroid dehydrogenase-like protein 2 [Canis lupus familiaris].
Length = 418
Score = 474 bits (1221), Expect = e-134
Identities = 236/287 (82%), Positives = 250/287 (87%)
Frame = +1
Query: 142 MLPNTGRLAGCTVFITGASRXXXXXXXXXXXXXXXNVVIAAKTTQTHPKLQGTIYTAAEE 321
MLPNTG+LAGCTVFITGASR N+VIAAKTT HPKL GTI+TAAEE
Sbjct: 1 MLPNTGKLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTHAHPKLPGTIFTAAEE 60
Query: 322 IQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRVDL 501
I+AAGGKALPC VDVRDEQQIS+AVEKAVE+FGGIDILVNNASAISLTNTLETPTKRVDL
Sbjct: 61 IEAAGGKALPCSVDVRDEQQISNAVEKAVERFGGIDILVNNASAISLTNTLETPTKRVDL 120
Query: 502 MMNVNTRGTYLTSKACIPYLKKSRIAHIXXXXXXXXXXXXWFKQHCAYTIAKYGMSMCVL 681
MMNVNTRGTYLTSKACIPYLKKS+IAHI WFKQHCAYTIAKYGMSMCVL
Sbjct: 121 MMNVNTRGTYLTSKACIPYLKKSKIAHILNLSPPLNLNPMWFKQHCAYTIAKYGMSMCVL 180
Query: 682 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVDIIADAAYCIFKKPKSFTG 861
GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKV+IIADAAY IFK+PKSFTG
Sbjct: 181 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVEIIADAAYSIFKRPKSFTG 240
Query: 862 NFIIDENILKEEGITNFDVYAVTPGHPLLPDFFLDEQPETVIKKMES 1002
NFIIDENIL+EEGI NFD+YA+ PGHPLLPDFFLDE P+ +IKK ES
Sbjct: 241 NFIIDENILREEGIKNFDIYAIKPGHPLLPDFFLDEHPDIIIKKAES 287
>ref|XP_532163.2| PREDICTED: similar to hydroxysteroid dehydrogenase like 2 [Canis
familiaris].
Length = 438
Score = 401 bits (1030), Expect = e-112
Identities = 196/227 (86%), Positives = 208/227 (91%)
Frame = +1
Query: 322 IQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRVDL 501
++AAGGKALPC VDVRDEQQIS+AVEKAVE+FGGIDILVNNASAISLTNTLETPTKRVDL
Sbjct: 81 VEAAGGKALPCSVDVRDEQQISNAVEKAVERFGGIDILVNNASAISLTNTLETPTKRVDL 140
Query: 502 MMNVNTRGTYLTSKACIPYLKKSRIAHIXXXXXXXXXXXXWFKQHCAYTIAKYGMSMCVL 681
MMNVNTRGTYLTSKACIPYLKKS+IAHI WFKQHCAYTIAKYGMSMCVL
Sbjct: 141 MMNVNTRGTYLTSKACIPYLKKSKIAHILNLSPPLNLNPMWFKQHCAYTIAKYGMSMCVL 200
Query: 682 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVDIIADAAYCIFKKPKSFTG 861
GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKV+IIADAAY IFK+PKSFTG
Sbjct: 201 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVEIIADAAYSIFKRPKSFTG 260
Query: 862 NFIIDENILKEEGITNFDVYAVTPGHPLLPDFFLDEQPETVIKKMES 1002
NFIIDENIL+EEGI NFD+YA+ PGHPLLPDFFLDE P+ +IKK ES
Sbjct: 261 NFIIDENILREEGIKNFDIYAIKPGHPLLPDFFLDEHPDIIIKKAES 307
>ref|XP_867654.1| PREDICTED: similar to hydroxysteroid dehydrogenase like 2 isoform 4
[Canis familiaris].
Length = 345
Score = 227 bits (579), Expect = 1e-59
Identities = 108/121 (89%), Positives = 115/121 (95%)
Frame = +1
Query: 640 AYTIAKYGMSMCVLGMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVDIIAD 819
AYTIAKYGMSMCVLGMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKV+IIAD
Sbjct: 94 AYTIAKYGMSMCVLGMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVEIIAD 153
Query: 820 AAYCIFKKPKSFTGNFIIDENILKEEGITNFDVYAVTPGHPLLPDFFLDEQPETVIKKME 999
AAY IFK+PKSFTGNFIIDENIL+EEGI NFD+YA+ PGHPLLPDFFLDE P+ +IKK E
Sbjct: 154 AAYSIFKRPKSFTGNFIIDENILREEGIKNFDIYAIKPGHPLLPDFFLDEHPDIIIKKAE 213
Query: 1000 S 1002
S
Sbjct: 214 S 214
Score = 135 bits (339), Expect = 9e-32
Identities = 69/97 (71%), Positives = 75/97 (77%)
Frame = +1
Query: 142 MLPNTGRLAGCTVFITGASRXXXXXXXXXXXXXXXNVVIAAKTTQTHPKLQGTIYTAAEE 321
MLPNTG+LAGCTVFITGASR N+VIAAKTT HPKL GTI+TAAEE
Sbjct: 1 MLPNTGKLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTHAHPKLPGTIFTAAEE 60
Query: 322 IQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDI 432
I+AAGGKALPC VDVRDEQQIS+AVEKAVE+FG I
Sbjct: 61 IEAAGGKALPCSVDVRDEQQISNAVEKAVERFGAYTI 97
>ref|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 8
[Canis familiaris].
Length = 300
Score = 48.9 bits (115), Expect = 8e-06
Identities = 27/95 (28%), Positives = 44/95 (46%)
Frame = +1
Query: 301 IYTAAEEIQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLET 480
I A E + G K VVD + + I + K + G + ILVNNA + ++ T
Sbjct: 73 IEDTAAECRRLGAKVHAFVVDCSNREDIYGSATKVKAEVGDVSILVNNAGVVYTSDLFAT 132
Query: 481 PTKRVDLMMNVNTRGTYLTSKACIPYLKKSRIAHI 585
+++ VN + T+KA +P + K+ HI
Sbjct: 133 QDPQIEKTFEVNVLAHFWTTKAFLPVMMKNNHGHI 167
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,727,490
Number of extensions: 855854
Number of successful extensions: 2871
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2859
Number of HSP's successfully gapped: 7
Length of query: 351
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 247
Effective length of database: 15,407,560
Effective search space: 3805667320
Effective search space used: 3805667320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013373
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013373
(1054 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098433.1| hydroxysteroid dehydrogenase-like protein 2 ... 486 e-137
Alignment gi|NP_001007810.1| peroxisomal multifunctional enzyme type 2 [B... 52 7e-07
Alignment gi|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taur... 50 3e-06
>ref|NP_001098433.1| hydroxysteroid dehydrogenase-like protein 2 [Bos taurus].
Length = 418
Score = 486 bits (1251), Expect = e-137
Identities = 240/290 (82%), Positives = 254/290 (87%)
Frame = +1
Query: 142 MLPNTGRLAGCTVFITGASRXXXXXXXXXXXXXXXNVVIAAKTTQTHPKLQGTIYTAAEE 321
MLPNTG+LAGCTVFITGASR N+VIAAKT Q HPKL GTIYTAAEE
Sbjct: 1 MLPNTGKLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQAHPKLPGTIYTAAEE 60
Query: 322 IQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRVDL 501
I+AAGGKALPC+VDVRDE+QIS AVEKAVEKFGGIDILVNNASAISLTNTLETPTK+VDL
Sbjct: 61 IKAAGGKALPCIVDVRDEEQISSAVEKAVEKFGGIDILVNNASAISLTNTLETPTKKVDL 120
Query: 502 MMNVNTRGTYLTSKACIPYLKKSRIAHIXXXXXXXXXXXXWFKQHCAYTIAKYGMSMCVL 681
MMNVNTRGTYLTSKACIPYLKKS++AHI WFKQHCAYTIAKYGMSMCVL
Sbjct: 121 MMNVNTRGTYLTSKACIPYLKKSKVAHILNLSPPLNLNPLWFKQHCAYTIAKYGMSMCVL 180
Query: 682 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVDIIADAAYCIFKKPKSFTG 861
GMAEEFKGEIAVNALWP+TAIHTAAMDMLGGSG+ESQCRKVDI+ADAAYCIFKKPKSFTG
Sbjct: 181 GMAEEFKGEIAVNALWPRTAIHTAAMDMLGGSGVESQCRKVDIMADAAYCIFKKPKSFTG 240
Query: 862 NFIIDENILKEEGITNFDVYAVTPGHPLLPDFFLDEQPETVIKKMESHGA 1011
NFIIDENILKEEGI NFDVYA+TPGHPLLPDFFLDEQP V KK +S+GA
Sbjct: 241 NFIIDENILKEEGIKNFDVYAITPGHPLLPDFFLDEQPAMVTKKADSYGA 290
>ref|NP_001007810.1| peroxisomal multifunctional enzyme type 2 [Bos taurus].
Length = 736
Score = 52.4 bits (124), Expect = 7e-07
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Frame = +1
Query: 316 EEIQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRV 495
EEI+ GGKA+ V + ++I V+ A++ FG IDI++NNA + + +
Sbjct: 60 EEIRRKGGKAVANYDSVEEGEKI---VKTALDAFGRIDIVINNAGILRDRSFSRISDEDW 116
Query: 496 DLMMNVNTRGTYLTSKACIPYLKKSRIAHIXXXXXXXXXXXXWFK-QHCAYTIAKYGMSM 672
D + V+ RG++L ++A ++KK + I + + +CA + G+S
Sbjct: 117 DKIQRVHLRGSFLVTRAAWDHMKKQKFGRIIMTSSASRIYGNFGQANYCAAKLGLLGLSN 176
Query: 673 CVLGMAEEFKGEIAVNALWP 732
C+ E K I N + P
Sbjct: 177 CL--AVEGKKNNIHCNTIAP 194
>ref|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taurus].
Length = 316
Score = 50.4 bits (119), Expect = 3e-06
Identities = 27/91 (29%), Positives = 45/91 (49%)
Frame = +1
Query: 313 AEEIQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKR 492
A E + G KA VVD + + I + +K + G + ILVNNA + ++ T +
Sbjct: 93 ATECKRLGAKAHTFVVDCSNREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQ 152
Query: 493 VDLMMNVNTRGTYLTSKACIPYLKKSRIAHI 585
++ VN + T+KA +P + K+ HI
Sbjct: 153 IEKTFEVNILAHFWTTKAFLPEMMKNNHGHI 183
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,364,887
Number of extensions: 837842
Number of successful extensions: 2758
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2753
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,273,310
Effective search space: 3539780880
Effective search space used: 3539780880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013373
(1054 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001183950.1| hydroxysteroid dehydrogenase-like protein 2 ... 522 e-148
Alignment gi|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 1... 54 2e-07
>ref|NP_001183950.1| hydroxysteroid dehydrogenase-like protein 2 [Sus scrofa].
Length = 418
Score = 522 bits (1344), Expect = e-148
Identities = 264/291 (90%), Positives = 264/291 (90%)
Frame = +1
Query: 142 MLPNTGRLAGCTVFITGASRXXXXXXXXXXXXXXXNVVIAAKTTQTHPKLQGTIYTAAEE 321
MLPNTGRLAGCTVFITGASR NVVIAAKTTQTHPKLQGTIYTAAEE
Sbjct: 1 MLPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANVVIAAKTTQTHPKLQGTIYTAAEE 60
Query: 322 IQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRVDL 501
IQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRVDL
Sbjct: 61 IQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRVDL 120
Query: 502 MMNVNTRGTYLTSKACIPYLKKSRIAHIXXXXXXXXXXXXWFKQHCAYTIAKYGMSMCVL 681
MMNVNTRGTYLTSKACIPYLKKSRIAHI WFKQHCAYTIAKYGMSMCVL
Sbjct: 121 MMNVNTRGTYLTSKACIPYLKKSRIAHILNLSPPLNLNPLWFKQHCAYTIAKYGMSMCVL 180
Query: 682 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVDIIADAAYCIFKKPKSFTG 861
GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVDIIADAAYCIFKKPKSFTG
Sbjct: 181 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVDIIADAAYCIFKKPKSFTG 240
Query: 862 NFIIDENILKEEGITNFDVYAVTPGHPLLPDFFLDEQPETVIKKMESHGAD 1014
NFIIDENILKEEGITNFDVYAVTPGHPLLPDFFLDEQPETVIKKMESHGAD
Sbjct: 241 NFIIDENILKEEGITNFDVYAVTPGHPLLPDFFLDEQPETVIKKMESHGAD 291
>ref|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 11-like [Sus scrofa].
Length = 313
Score = 53.5 bits (127), Expect = 2e-07
Identities = 28/91 (30%), Positives = 46/91 (50%)
Frame = +1
Query: 313 AEEIQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKR 492
A+E + G KA VVD D + I + +K + G + ILVNNA + ++ T +
Sbjct: 77 ADECKRLGSKAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQ 136
Query: 493 VDLMMNVNTRGTYLTSKACIPYLKKSRIAHI 585
++ VN + T+KA +P + K+ HI
Sbjct: 137 IEKTFEVNILAHFWTTKAFLPAMMKNNHGHI 167
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,037,536
Number of extensions: 532581
Number of successful extensions: 1717
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1716
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,854,232
Effective search space: 2222412232
Effective search space used: 2222412232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013373
(1054 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077217.2| hydroxysteroid dehydrogenase-like protein 2 [Mu... 469 e-132
Alignment gi|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculu... 55 9e-08
>ref|NP_077217.2| hydroxysteroid dehydrogenase-like protein 2 [Mus musculus].
Length = 490
Score = 469 bits (1206), Expect = e-132
Identities = 231/288 (80%), Positives = 250/288 (86%)
Frame = +1
Query: 142 MLPNTGRLAGCTVFITGASRXXXXXXXXXXXXXXXNVVIAAKTTQTHPKLQGTIYTAAEE 321
MLPNTG+LAGCTVFITGASR N+VIAAKTTQ HPKL GTIYTAAEE
Sbjct: 1 MLPNTGKLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTQKHPKLLGTIYTAAEE 60
Query: 322 IQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRVDL 501
I+AAGG ALPCVVDVRDEQQI+ AVEKAVEKFGGIDILVNNASAISLTNTL+TPTKRVDL
Sbjct: 61 IEAAGGTALPCVVDVRDEQQINSAVEKAVEKFGGIDILVNNASAISLTNTLDTPTKRVDL 120
Query: 502 MMNVNTRGTYLTSKACIPYLKKSRIAHIXXXXXXXXXXXXWFKQHCAYTIAKYGMSMCVL 681
MMNVNTRGTYLTSKACIP+LKKS++ HI WFKQHCAYTIAKYGMSMCVL
Sbjct: 121 MMNVNTRGTYLTSKACIPFLKKSKVGHILNLSPPLNLNPLWFKQHCAYTIAKYGMSMCVL 180
Query: 682 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVDIIADAAYCIFKKPKSFTG 861
GMAEEF+GEIAVNALWP+TAIHTAAMDMLGGSG+E+QCRKVDIIADAAY IFK+PKSFTG
Sbjct: 181 GMAEEFRGEIAVNALWPRTAIHTAAMDMLGGSGVENQCRKVDIIADAAYSIFKRPKSFTG 240
Query: 862 NFIIDENILKEEGITNFDVYAVTPGHPLLPDFFLDEQPETVIKKMESH 1005
NFIIDENILKEEGI NFDVYA+ PGHPLLPDFFLDE P+ V+++ ES+
Sbjct: 241 NFIIDENILKEEGIKNFDVYAIAPGHPLLPDFFLDEHPDAVMEEKESN 288
>ref|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculus].
Length = 298
Score = 55.1 bits (131), Expect = 9e-08
Identities = 29/95 (30%), Positives = 47/95 (49%)
Frame = +1
Query: 301 IYTAAEEIQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLET 480
I A + + G +A P VVD ++I A +K E+ G + ILVNNA + + T
Sbjct: 73 IEETAAKCRKLGAQAHPFVVDCSQREEIYSAAKKVKEEVGDVSILVNNAGVVYTADLFAT 132
Query: 481 PTKRVDLMMNVNTRGTYLTSKACIPYLKKSRIAHI 585
+++ VN + T+KA +P + K+ HI
Sbjct: 133 QDPQIEKTFEVNVLAHFWTTKAFLPVMMKNNHGHI 167
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,296,977
Number of extensions: 743530
Number of successful extensions: 2961
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2949
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 249
Effective length of database: 12,553,887
Effective search space: 3125917863
Effective search space used: 3125917863
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013373
(1054 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115679.2| hydroxysteroid dehydrogenase-like protein 2 iso... 467 e-132
Alignment gi|NP_001182751.1| hydroxysteroid dehydrogenase-like protein 2 ... 225 6e-59
>ref|NP_115679.2| hydroxysteroid dehydrogenase-like protein 2 isoform 1 [Homo sapiens].
Length = 418
Score = 467 bits (1202), Expect = e-132
Identities = 234/290 (80%), Positives = 247/290 (85%)
Frame = +1
Query: 142 MLPNTGRLAGCTVFITGASRXXXXXXXXXXXXXXXNVVIAAKTTQTHPKLQGTIYTAAEE 321
MLPNTGRLAGCTVFITGASR N+VIAAKT Q HPKL GTIYTAAEE
Sbjct: 1 MLPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEE 60
Query: 322 IQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRVDL 501
I+A GGKALPC+VDVRDEQQIS AVEKA++KFGGIDILVNNASAISLTNTL+TPTKR+DL
Sbjct: 61 IEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDL 120
Query: 502 MMNVNTRGTYLTSKACIPYLKKSRIAHIXXXXXXXXXXXXWFKQHCAYTIAKYGMSMCVL 681
MMNVNTRGTYL SKACIPYLKKS++AHI WFKQHCAYTIAKYGMSM VL
Sbjct: 121 MMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVL 180
Query: 682 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVDIIADAAYCIFKKPKSFTG 861
GMAEEFKGEIAVNALWPKTAIHTAAMDMLGG GIESQCRKVDIIADAAY IF+KPKSFTG
Sbjct: 181 GMAEEFKGEIAVNALWPKTAIHTAAMDMLGGPGIESQCRKVDIIADAAYSIFQKPKSFTG 240
Query: 862 NFIIDENILKEEGITNFDVYAVTPGHPLLPDFFLDEQPETVIKKMESHGA 1011
NF+IDENILKEEGI NFDVYA+ PGHPL PDFFLDE PE V KK+ES GA
Sbjct: 241 NFVIDENILKEEGIENFDVYAIKPGHPLQPDFFLDEYPEAVSKKVESTGA 290
>ref|NP_001182751.1| hydroxysteroid dehydrogenase-like protein 2 isoform 2 [Homo sapiens].
Length = 345
Score = 225 bits (573), Expect = 6e-59
Identities = 111/128 (86%), Positives = 116/128 (90%)
Frame = +1
Query: 628 KQHCAYTIAKYGMSMCVLGMAEEFKGEIAVNALWPKTAIHTAAMDMLGGSGIESQCRKVD 807
K+ AYTIAKYGMSM VLGMAEEFKGEIAVNALWPKTAIHTAAMDMLGG GIESQCRKVD
Sbjct: 90 KKFGAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTAAMDMLGGPGIESQCRKVD 149
Query: 808 IIADAAYCIFKKPKSFTGNFIIDENILKEEGITNFDVYAVTPGHPLLPDFFLDEQPETVI 987
IIADAAY IF+KPKSFTGNF+IDENILKEEGI NFDVYA+ PGHPL PDFFLDE PE V
Sbjct: 150 IIADAAYSIFQKPKSFTGNFVIDENILKEEGIENFDVYAIKPGHPLQPDFFLDEYPEAVS 209
Query: 988 KKMESHGA 1011
KK+ES GA
Sbjct: 210 KKVESTGA 217
Score = 135 bits (340), Expect = 6e-32
Identities = 69/97 (71%), Positives = 74/97 (76%)
Frame = +1
Query: 142 MLPNTGRLAGCTVFITGASRXXXXXXXXXXXXXXXNVVIAAKTTQTHPKLQGTIYTAAEE 321
MLPNTGRLAGCTVFITGASR N+VIAAKT Q HPKL GTIYTAAEE
Sbjct: 1 MLPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEE 60
Query: 322 IQAAGGKALPCVVDVRDEQQISDAVEKAVEKFGGIDI 432
I+A GGKALPC+VDVRDEQQIS AVEKA++KFG I
Sbjct: 61 IEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGAYTI 97
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,376,227
Number of extensions: 866815
Number of successful extensions: 3005
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2997
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,901,872
Effective search space: 3695664256
Effective search space used: 3695664256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013373
(1054 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 391 e-106
>Sscrofa_Chr01
|| Length = 315321322
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 739 gccatacacactgctgctatggatatgctgggaggatctggtatcgaaagccaatgtagg 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283943208 gccatacacactgctgctatggatatgctgggaggatctggtatcgaaagccaatgtagg 283943267
Query: 799 aaagttgatatcattgccgatgctgcatattgcattttcaaaaagccaaaaagctttact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283943268 aaagttgatatcattgccgatgctgcatattgcattttcaaaaagccaaaaagctttact 283943327
Query: 859 ggcaactttattattgatgaaaatatcttaaaagaagaaggaataacaaatttcgatgtc 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283943328 ggcaactttattattgatgaaaatatcttaaaagaagaaggaataacaaatttcgatgtc 283943387
Query: 919 tatgctgttacaccagg 935
|||||||||||||||||
Sbjct: 283943388 tatgctgttacaccagg 283943404
Score = 327 bits (165), Expect = 7e-87
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 158 ggaggctagcaggatgtacagttttcatcactggtgcgagccgtggcattggcaaagcca 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283916127 ggaggctagcaggatgtacagttttcatcactggtgcgagccgtggcattggcaaagcca 283916186
Query: 218 ttgctttgaaagcagcaaaggatggagcaaatgttgtcattgctgcgaagaccacccaga 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283916187 ttgctttgaaagcagcaaaggatggagcaaatgttgtcattgctgcgaagaccacccaga 283916246
Query: 278 cacaccctaaacttcaaggcacaatctatactgctgctgaagaaa 322
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283916247 cacaccctaaacttcaaggcacaatctatactgctgctgaagaaa 283916291
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 420 aggaatcgatattttggtgaataacgccagtgctattagcttgaccaacacattggaaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283923561 aggaatcgatattttggtgaataacgccagtgctattagcttgaccaacacattggaaac 283923620
Query: 480 acctacaaagagagtggatttgatgatgaatgtcaacaccagaggcacctatcttac 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283923621 acctacaaagagagtggatttgatgatgaatgtcaacaccagaggcacctatcttac 283923677
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 537 atccaaagcatgtattccttatttgaaaaagagtcgaattgctcatatcctcaatctcag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283931492 atccaaagcatgtattccttatttgaaaaagagtcgaattgctcatatcctcaatctcag 283931551
Query: 597 cccacccctgaacctaaacccactgtggttcaaacagcactgtg 640
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283931552 cccacccctgaacctaaacccactgtggttcaaacagcactgtg 283931595
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 58 taaatgcggagcagaaagtcagcttctatttgcagtattccttcctgtggcggttgttgc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283908761 taaatgcggagcagaaagtcagcttctatttgcagtattccttcctgtggcggttgttgc 283908820
Query: 118 caccgactctggtccgcggaagttatgttgcccaacaccggg 159
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283908821 caccgactctggtccgcggaagttatgttgcccaacaccggg 283908862
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 323 tccaggcagctggaggaaaggccttgccatgcgttgttgatgtgagagatgaacagcaga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283917882 tccaggcagctggaggaaaggccttgccatgcgttgttgatgtgagagatgaacagcaga 283917941
Query: 383 tcagcgatgcagtggagaaagcagtcgagaaatttggagg 422
||||||||||||||||||||||||||||||||||||||||
Sbjct: 283917942 tcagcgatgcagtggagaaagcagtcgagaaatttggagg 283917981
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 640 gcttacaccattgctaagtatggtatgtctatgtgtgtgctcgggatggcggaagagttt 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283933228 gcttacaccattgctaagtatggtatgtctatgtgtgtgctcgggatggcggaagagttt 283933287
Query: 700 aaaggagaaattgcagtcaatgcattgtggccgaaaactg 739
||||||||||||||||||||||||||||||||||||||||
Sbjct: 283933288 aaaggagaaattgcagtcaatgcattgtggccgaaaactg 283933327
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 932 caggccatcctttgttaccagatttcttcttagatgaacagccagagacagttatcaaga 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283945755 caggccatcctttgttaccagatttcttcttagatgaacagccagagacagttatcaaga 283945814
Query: 992 aaatggagtcacatggt 1008
|||||||||||||||||
Sbjct: 283945815 aaatggagtcacatggt 283945831
Score = 89.7 bits (45), Expect = 3e-15
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 1006 ggtgctgatccagaattgaaaaaagagaagttgccgccaccaccaaaac 1054
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 283964283 ggtgctgatccagaattgaaaaaagagaagttgccgccaccgccaaaac 283964331
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,057,000
Number of extensions: 226
Number of successful extensions: 226
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 9
Length of query: 1054
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1033
Effective length of database: 2,808,413,156
Effective search space: 2901090790148
Effective search space used: 2901090790148
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)