Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013375
(2088 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541953.2| PREDICTED: similar to plasmalemma vesicle assoc... 561 e-160
>ref|XP_541953.2| PREDICTED: similar to plasmalemma vesicle associated protein [Canis
familiaris].
Length = 457
Score = 561 bits (1446), Expect = e-160
Identities = 292/428 (68%), Positives = 327/428 (76%)
Frame = +3
Query: 132 MGLAMEHGGPYSRAGGSPRGCWYYMRYXXXXXXXXXXXXXXXXVLFMVYGNVHVSTESNL 311
MGL +EHGG Y+RAGGSPRGCWYY+RY VLFMVYGNVHVSTESNL
Sbjct: 1 MGLPVEHGGAYARAGGSPRGCWYYLRYFFLFVSLIQFLIILGLVLFMVYGNVHVSTESNL 60
Query: 312 QATERRADGLYGQVMGLTASQANLSKELNLTTRARDAIMQMLLSARREQDRINSSFRQCQ 491
QATERRA+GLY QV+GLTASQANLSKELNLT+RA++ IMQ+LL+ARR+ DRIN+SF QCQ
Sbjct: 61 QATERRAEGLYSQVVGLTASQANLSKELNLTSRAKETIMQLLLNARRDLDRINASFCQCQ 120
Query: 492 ADRAIHLNNQVYMAAIILSEKQCQEQLKETNKSCNDLNLMLNQKVKTLEVELSKEKLVCM 671
ADR +++NNQ YM AIILSEKQCQEQLKETNKSCN L LMLNQK KTLE+E++KEK VC
Sbjct: 121 ADRVVYMNNQRYMVAIILSEKQCQEQLKETNKSCNALFLMLNQKAKTLEMEVAKEKQVCT 180
Query: 672 KDKESLVLSKRVVEEQLVECSKXXXXXXXXXXXXXXXXXKVQTLCLLLDKDKIETELRSL 851
KDKE+LVLSKRVVEEQL EC K KVQTLCL LDKDK ETELR+L
Sbjct: 181 KDKEALVLSKRVVEEQLAECGKAREQQRQERQLAEDRLQKVQTLCLPLDKDKFETELRNL 240
Query: 852 WRDSIISRSLDSLGYNMYHPLGSELASIRRTCDHMPTLMSAKVEEMARSLRAGIERVTRE 1031
WRDSII R+LD++ YN+YHPLGSE+ SIRR+CDHMPTLMS KVEE+ARSLRAGIERV RE
Sbjct: 241 WRDSIIPRTLDTMSYNLYHPLGSEITSIRRSCDHMPTLMSTKVEELARSLRAGIERVARE 300
Query: 1032 NSDLQRQKLEVQQGLXXXXXXXXXXXXXXXXXXXXLQAECTRQTQLALEEKAALRKEKDN 1211
N+D+QRQKLEV+Q L LQAEC RQTQLALEEKA LRKE+D
Sbjct: 301 NADIQRQKLEVEQALKASQEAKEKLEKEAQAREAKLQAECARQTQLALEEKATLRKERDT 360
Query: 1212 LAKELEEKKREIEQLKMELAISKSALDTCIKAKSQXXXXXXXXXXXXXXXXXDSATLEEF 1391
LAKELEEKKR+ EQL+M+LA+S SALDTCIKAKSQ D A LEEF
Sbjct: 361 LAKELEEKKRDAEQLRMQLAVSNSALDTCIKAKSQPIPIPRPAGPAPNPQPIDPAGLEEF 420
Query: 1392 KRRILESQ 1415
KRRILESQ
Sbjct: 421 KRRILESQ 428
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 77,581,846
Number of extensions: 2236818
Number of successful extensions: 13828
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 13675
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 586
Effective length of database: 15,207,544
Effective search space: 8911620784
Effective search space used: 8911620784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013375
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013375
(2088 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030430.1| plasmalemma vesicle-associated protein [Bos ... 520 e-147
Alignment gi|XP_002688587.1| PREDICTED: hypothetical protein [Bos taurus]. 86 2e-16
Alignment gi|XP_002704760.1| PREDICTED: hypothetical protein [Bos taurus]. 86 2e-16
>ref|NP_001030430.1| plasmalemma vesicle-associated protein [Bos taurus].
Length = 442
Score = 520 bits (1340), Expect = e-147
Identities = 274/429 (63%), Positives = 313/429 (72%), Gaps = 1/429 (0%)
Frame = +3
Query: 132 MGLAMEHGGPYSRAGGSPRGCWYYMRYXXXXXXXXXXXXXXXXVLFMVYGNVHVSTESNL 311
MGLAMEHG PYSRAG S RGCWYY+RY VLFMVYGNVHVSTESNL
Sbjct: 1 MGLAMEHGSPYSRAGSSSRGCWYYLRYFFLFVSLIQFLIILGLVLFMVYGNVHVSTESNL 60
Query: 312 QATERRADGLYGQVMGLTASQANLSKELNLTTRARDAIMQMLLSARREQDRINSSFRQCQ 491
QATERRADGLYGQV+GLTASQANL+KELNLT RA++AI QM+LSARR+ DRIN+SFRQCQ
Sbjct: 61 QATERRADGLYGQVVGLTASQANLTKELNLTARAKEAINQMMLSARRDLDRINASFRQCQ 120
Query: 492 ADRAIHLNNQVYMAAIILSEKQCQEQLKETNKSCNDLNLMLNQKVKTLEVELSKEKLVCM 671
ADR I++NNQ YMAAIILSEKQCQE LKE NKSC+ L L L QK KTLEVEL+KEKLVC
Sbjct: 121 ADRVIYMNNQRYMAAIILSEKQCQEHLKEANKSCDALALTLTQKAKTLEVELAKEKLVCT 180
Query: 672 KDKESLVLSKRVVEEQLVECSKXXXXXXXXXXXXXXXXXKVQTLCLLLDKDKIETELRSL 851
KDK+ L + KRV EEQL EC K KVQ C+ LD++K ET+LR+L
Sbjct: 181 KDKDGLTVGKRVAEEQLAECGKTRDQQQQERQLAEDRLRKVQAFCIPLDRNKFETDLRNL 240
Query: 852 WRDSIISRSLDSLGYNMYHPLGSELASIRRTCDHMPTLMSAKVEEMARSLRAGIERVTRE 1031
WRDSII R+L +L +N+YHPLGSEL SI+R CD +P++M++KVEE+ARSLRAGI+ VT E
Sbjct: 241 WRDSIIPRTLSTLSFNLYHPLGSELPSIQRACDSLPSIMTSKVEELARSLRAGIDSVTLE 300
Query: 1032 NSDLQRQKLEVQQGLXXXXXXXXXXXXXXXXXXXXLQAECTRQTQLALEEKAALRKEKDN 1211
N LQRQKLEV+Q L LQAEC RQTQLALEEK AL+KE+D
Sbjct: 301 NEKLQRQKLEVEQSLRASQEAKEKVEKEAQAQAVKLQAECARQTQLALEEKVALQKERDR 360
Query: 1212 LAKELEEKKREIEQLKMELAISKSALDTCIKAKSQ-XXXXXXXXXXXXXXXXXDSATLEE 1388
L KELEEKKRE E LK++LA+S SALDTCIKAKSQ D A+LEE
Sbjct: 361 LVKELEEKKREAEHLKLQLAVSNSALDTCIKAKSQLTIPGPRPAVPVPNPPPIDPASLEE 420
Query: 1389 FKRRILESQ 1415
FKRRIL+SQ
Sbjct: 421 FKRRILDSQ 429
>ref|XP_002688587.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 131
Score = 85.5 bits (210), Expect = 2e-16
Identities = 50/104 (48%), Positives = 55/104 (52%)
Frame = -2
Query: 479 EAGVDSVLFSAGAQQHLHDGISXXXXXXXXXXXXXXXGCEPHHLAVETVSPALRGLQIGL 300
EAGVDSV SAGA+ HL D + EPHHLAV+ V PAL GLQ+GL
Sbjct: 28 EAGVDSVQVSAGAEHHLVDRLLGAGSEVELLGQVGLGSREPHHLAVQAVGPALGGLQVGL 87
Query: 299 GTHVHVAVXXXXXXXXXXXXXXXXXXXEKVAHVVPAASRTAPGP 168
GTHVHVAV EKVA +VPAA APGP
Sbjct: 88 GTHVHVAVDHEEDEAKDDEELDERDEEEKVAQIVPAAPGAAPGP 131
>ref|XP_002704760.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 131
Score = 85.5 bits (210), Expect = 2e-16
Identities = 50/104 (48%), Positives = 55/104 (52%)
Frame = -2
Query: 479 EAGVDSVLFSAGAQQHLHDGISXXXXXXXXXXXXXXXGCEPHHLAVETVSPALRGLQIGL 300
EAGVDSV SAGA+ HL D + EPHHLAV+ V PAL GLQ+GL
Sbjct: 28 EAGVDSVQVSAGAEHHLVDRLLGAGSEVELLGQVGLGSREPHHLAVQAVGPALGGLQVGL 87
Query: 299 GTHVHVAVXXXXXXXXXXXXXXXXXXXEKVAHVVPAASRTAPGP 168
GTHVHVAV EKVA +VPAA APGP
Sbjct: 88 GTHVHVAVDHEEDEAKDDEELDERDEEEKVAQIVPAAPGAAPGP 131
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 74,452,820
Number of extensions: 2171169
Number of successful extensions: 12972
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12834
Number of HSP's successfully gapped: 3
Length of query: 696
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 587
Effective length of database: 14,074,782
Effective search space: 8261897034
Effective search space used: 8261897034
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013375
(2088 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 48,129,458
Number of extensions: 1404846
Number of successful extensions: 8472
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 8378
Number of HSP's successfully gapped: 0
Length of query: 696
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 590
Effective length of database: 8,704,850
Effective search space: 5135861500
Effective search space used: 5135861500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013375
(2088 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115774.2| plasmalemma vesicle-associated protein [Mus mus... 420 e-117
>ref|NP_115774.2| plasmalemma vesicle-associated protein [Mus musculus].
Length = 438
Score = 420 bits (1080), Expect = e-117
Identities = 221/428 (51%), Positives = 288/428 (67%)
Frame = +3
Query: 132 MGLAMEHGGPYSRAGGSPRGCWYYMRYXXXXXXXXXXXXXXXXVLFMVYGNVHVSTESNL 311
MGL+M+ PY+R G RGCWYY+RY VLFM+YGNVH +TES+L
Sbjct: 1 MGLSMDRS-PYARTGDQQRGCWYYLRYFFLFVSLIQFLIILGLVLFMIYGNVHATTESSL 59
Query: 312 QATERRADGLYGQVMGLTASQANLSKELNLTTRARDAIMQMLLSARREQDRINSSFRQCQ 491
+ATE RAD LY QV+GL+ASQANLSK+LN++ ++ +MQ LL+ RRE +RIN+SFRQCQ
Sbjct: 60 RATEIRADSLYSQVVGLSASQANLSKQLNISLLVKETVMQQLLTTRREMERINASFRQCQ 119
Query: 492 ADRAIHLNNQVYMAAIILSEKQCQEQLKETNKSCNDLNLMLNQKVKTLEVELSKEKLVCM 671
D ++N ++AAIILSEKQCQEQLKE NK+C L L +KVKTLE+E++KEK VC
Sbjct: 120 GDLITYINYNRFIAAIILSEKQCQEQLKEVNKTCEALLFKLGEKVKTLEMEVAKEKAVCS 179
Query: 672 KDKESLVLSKRVVEEQLVECSKXXXXXXXXXXXXXXXXXKVQTLCLLLDKDKIETELRSL 851
KDKESL+ KR EEQL C K KVQ+LC+ LD++K + ++ S
Sbjct: 180 KDKESLLAGKRQAEEQLEACGKARERQQQEQQVTEENLRKVQSLCIPLDQEKFQADVLSA 239
Query: 852 WRDSIISRSLDSLGYNMYHPLGSELASIRRTCDHMPTLMSAKVEEMARSLRAGIERVTRE 1031
WRDS+I R+L++L Y ++ L E AS+RRTC+ +P +M+ K+EE+AR LRAGIERVTRE
Sbjct: 240 WRDSLIYRTLETLPY--HYQLMPEYASLRRTCESLPGIMTTKIEELARGLRAGIERVTRE 297
Query: 1032 NSDLQRQKLEVQQGLXXXXXXXXXXXXXXXXXXXXLQAECTRQTQLALEEKAALRKEKDN 1211
N++L+RQKLE+++ L+AEC RQTQLALEEKAALR ++DN
Sbjct: 298 NAELRRQKLELERAAQAAQEARARAGTEAQARETQLRAECARQTQLALEEKAALRAQRDN 357
Query: 1212 LAKELEEKKREIEQLKMELAISKSALDTCIKAKSQXXXXXXXXXXXXXXXXXDSATLEEF 1391
L +ELE +KRE+EQL+ E+ + SALDTC+KAKS D A+LEEF
Sbjct: 358 LERELEARKRELEQLRTEVDVRISALDTCVKAKSLPAVPPRVSGPPPNPPPIDPASLEEF 417
Query: 1392 KRRILESQ 1415
K+RILESQ
Sbjct: 418 KKRILESQ 425
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,739,343
Number of extensions: 1782909
Number of successful extensions: 9813
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9723
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 588
Effective length of database: 12,373,671
Effective search space: 7275718548
Effective search space used: 7275718548
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013375
(2088 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112600.1| plasmalemma vesicle-associated protein [Homo sa... 550 e-156
>ref|NP_112600.1| plasmalemma vesicle-associated protein [Homo sapiens].
Length = 442
Score = 550 bits (1416), Expect = e-156
Identities = 290/429 (67%), Positives = 324/429 (75%), Gaps = 1/429 (0%)
Frame = +3
Query: 132 MGLAMEHGGPYSRAGGSPRGCWYYMRYXXXXXXXXXXXXXXXXVLFMVYGNVHVSTESNL 311
MGLAMEHGG Y+RAGGS RGCWYY+RY VLFMVYGNVHVSTESNL
Sbjct: 1 MGLAMEHGGSYARAGGSSRGCWYYLRYFFLFVSLIQFLIILGLVLFMVYGNVHVSTESNL 60
Query: 312 QATERRADGLYGQVMGLTASQANLSKELNLTTRARDAIMQMLLSARREQDRINSSFRQCQ 491
QATERRA+GLY Q++GLTASQ+NL+KELN TTRA+DAIMQM L+ARR+ DRIN+SFRQCQ
Sbjct: 61 QATERRAEGLYSQLLGLTASQSNLTKELNFTTRAKDAIMQMWLNARRDLDRINASFRQCQ 120
Query: 492 ADRAIHLNNQVYMAAIILSEKQCQEQLKETNKSCNDLNLMLNQKVKTLEVELSKEKLVCM 671
DR I+ NNQ YMAAIILSEKQC++Q K+ NKSC+ L MLNQKVKTLEVE++KEK +C
Sbjct: 121 GDRVIYTNNQRYMAAIILSEKQCRDQFKDMNKSCDALLFMLNQKVKTLEVEIAKEKTICT 180
Query: 672 KDKESLVLSKRVVEEQLVECSKXXXXXXXXXXXXXXXXXKVQTLCLLLDKDKIETELRSL 851
KDKES++L+KRV EEQLVEC K KVQ LCL LDKDK E +LR+L
Sbjct: 181 KDKESVLLNKRVAEEQLVECVKTRELQHQERQLAKEQLQKVQALCLPLDKDKFEMDLRNL 240
Query: 852 WRDSIISRSLDSLGYNMYHPLGSELASIRRTCDHMPTLMSAKVEEMARSLRAGIERVTRE 1031
WRDSII RSLD+LGYN+YHPLGSELASIRR CDHMP+LMS+KVEE+ARSLRA IERV RE
Sbjct: 241 WRDSIIPRSLDNLGYNLYHPLGSELASIRRACDHMPSLMSSKVEELARSLRADIERVARE 300
Query: 1032 NSDLQRQKLEVQQGLXXXXXXXXXXXXXXXXXXXXLQAECTRQTQLALEEKAALRKEKDN 1211
NSDLQRQKLE QQGL LQAEC+RQTQLALEEKA LRKE+DN
Sbjct: 301 NSDLQRQKLEAQQGLRASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDN 360
Query: 1212 LAKELEEKKREIEQLKMELAISKSALDTCIKAKSQ-XXXXXXXXXXXXXXXXXDSATLEE 1388
LAKELEEKKRE EQL+MELAI SALDTCIK KSQ D A+LEE
Sbjct: 361 LAKELEEKKREAEQLRMELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEE 420
Query: 1389 FKRRILESQ 1415
FKR+ILESQ
Sbjct: 421 FKRKILESQ 429
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,823,360
Number of extensions: 2165019
Number of successful extensions: 12729
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12589
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 586
Effective length of database: 14,671,124
Effective search space: 8597278664
Effective search space used: 8597278664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013375
(2088 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 54,164,478
Number of extensions: 365
Number of successful extensions: 365
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 0
Length of query: 2088
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2066
Effective length of database: 2,808,408,574
Effective search space: 5802172113884
Effective search space used: 5802172113884
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)