Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013378
(1340 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533345.2| PREDICTED: similar to ARHGAP15 [Canis familiari... 792 0.0
Alignment gi|XP_859683.1| PREDICTED: similar to Rho GTPase activating pro... 310 2e-84
Alignment gi|XP_859747.1| PREDICTED: similar to Rho GTPase activating pro... 310 3e-84
Alignment gi|XP_859716.1| PREDICTED: similar to Rho GTPase activating pro... 310 3e-84
Alignment gi|XP_544216.2| PREDICTED: similar to Rho GTPase activating pro... 310 3e-84
Alignment gi|XP_859622.1| PREDICTED: similar to Rho GTPase activating pro... 297 2e-80
Alignment gi|XP_859654.1| PREDICTED: similar to Rho GTPase activating pro... 275 7e-74
Alignment gi|XP_859557.1| PREDICTED: similar to Rho GTPase activating pro... 270 3e-72
Alignment gi|XP_531645.2| PREDICTED: similar to Rho-GTPase-activating pro... 266 4e-71
Alignment gi|XP_546401.2| PREDICTED: similar to Rho GTPase-activating pro... 112 1e-24
>ref|XP_533345.2| PREDICTED: similar to ARHGAP15 [Canis familiaris].
Length = 475
Score = 792 bits (2045), Expect = 0.0
Identities = 396/419 (94%), Positives = 405/419 (96%)
Frame = +2
Query: 65 MQKSTNSDTSVETLNPTRQATGAVQMRIKNANSHHDRLSQSKSMILTDVGKVTEPISRHR 244
MQKSTNSDTSVETLN TRQ TGAVQMRIKNANSHHDRLSQSKSMILTDVGKV EPISRHR
Sbjct: 1 MQKSTNSDTSVETLNSTRQGTGAVQMRIKNANSHHDRLSQSKSMILTDVGKVIEPISRHR 60
Query: 245 RNHSQHILKDVIPPLEQLMVEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKES 424
RNHSQH+LKDVI PLEQLMVEKEGYLQKAKIADGGKKLRKNWSTSW+VLSSRKIEFYKES
Sbjct: 61 RNHSQHVLKDVITPLEQLMVEKEGYLQKAKIADGGKKLRKNWSTSWIVLSSRKIEFYKES 120
Query: 425 KQQALSNMKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDW 604
KQQALSN+KTGHKPE++DLCGA IEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDW
Sbjct: 121 KQQALSNVKTGHKPESVDLCGAHIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDW 180
Query: 605 FHAIKNAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHH 784
FHAIKNAIDRLPKDPS SRNLELFKIQRSSSTELL HYD+D KEQKPEHRKSLMFRLHH
Sbjct: 181 FHAIKNAIDRLPKDPSGSSRNLELFKIQRSSSTELLGHYDNDTKEQKPEHRKSLMFRLHH 240
Query: 785 SASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQ 964
SASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQ
Sbjct: 241 SASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQ 300
Query: 965 CIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFR 1144
CIEAVEKRGL+VDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFR
Sbjct: 301 CIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFR 360
Query: 1145 ELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK*VIK 1321
ELPEPLFPYSFFERFVEAIKKQD NTRIET+KSLVQKLPPPNRDTMK+LF HL K V K
Sbjct: 361 ELPEPLFPYSFFERFVEAIKKQDYNTRIETIKSLVQKLPPPNRDTMKILFGHLTKIVAK 419
>ref|XP_859683.1| PREDICTED: similar to Rho GTPase activating protein 12 isoform 5
[Canis familiaris].
Length = 813
Score = 310 bits (795), Expect = 2e-84
Identities = 177/390 (45%), Positives = 243/390 (62%), Gaps = 4/390 (1%)
Frame = +2
Query: 152 NANSHHDR-LSQSKSMILTDVGKVTEPISRHRRNHSQHILKDVIPPLEQLMVEKEGYLQK 328
NA+S R + +S+S+ ++ EPI + HS +L EK G L
Sbjct: 389 NASSQQQREIIKSRSLDR----RLQEPIVLTKWRHSTIVLDT-----NDKGQEKYGLLNV 439
Query: 329 AKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPE-NIDLCGAQIEWA 505
KI + GKK+RKNW +SW VL + F K KPE +DL GA +E A
Sbjct: 440 TKITENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDLKGATVEMA 499
Query: 506 -KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTPSRNLELFK 682
K+KSS+KNVF++ T G E L+QSD D +I DWF + + I N + +
Sbjct: 500 SKDKSSKKNVFELKTRQGTELLIQSDNDTVINDWFKVLSSTI------------NNQTVE 547
Query: 683 IQRSSSTELLSHYDSDIKEQKPEHRKSLMFR-LHHSASDTSDKNRVKSRLKKFITRRPSL 859
+ E+ + +++ +H+ R + S+ D+S++ + K LKKF+TRRP+L
Sbjct: 548 TDEAIEEEIPESPGIEKHDKEKDHKDPKKLRPMKVSSIDSSEQKKTKKNLKKFLTRRPTL 607
Query: 860 KTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYRVSGNLATI 1039
+ ++EKG IKDQ+FG++L +C+REN TVP FVK CIE VE GL+VDGIYRVSGNLA I
Sbjct: 608 QAVREKGYIKDQVFGANLANLCQRENGTVPNFVKLCIEHVEAYGLDVDGIYRVSGNLAVI 667
Query: 1040 QKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAIKKQDNN 1219
QKLRF VN +EKL+L+DS+WEDIHV+TGALKMFFRELPEPLF ++ F FV AI KQ+
Sbjct: 668 QKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVNAI-KQEPR 726
Query: 1220 TRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
R+ VK L+++LP PN+DTM++LFRHLK+
Sbjct: 727 QRVAAVKDLIRQLPKPNQDTMQILFRHLKR 756
>ref|XP_859747.1| PREDICTED: similar to Rho GTPase activating protein 12 isoform 7
[Canis familiaris].
Length = 838
Score = 310 bits (793), Expect = 3e-84
Identities = 165/338 (48%), Positives = 222/338 (65%), Gaps = 3/338 (0%)
Frame = +2
Query: 305 EKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPE-NIDL 481
EK G L KI + GKK+RKNW +SW VL + F K KPE +DL
Sbjct: 457 EKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDL 516
Query: 482 CGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTP 658
GA +E A K+KSS+KNVF++ T G E L+QSD D +I DWF + + I
Sbjct: 517 KGATVEMASKDKSSKKNVFELKTRQGTELLIQSDNDTVINDWFKVLSSTI---------- 566
Query: 659 SRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFR-LHHSASDTSDKNRVKSRLKK 835
N + + + E+ + +++ +H+ R + S+ D+S++ + K LKK
Sbjct: 567 --NNQTVETDEAIEEEIPESPGIEKHDKEKDHKDPKKLRPMKVSSIDSSEQKKTKKNLKK 624
Query: 836 FITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYR 1015
F+TRRP+L+ ++EKG IKDQ+FG++L +C+REN TVP FVK CIE VE GL+VDGIYR
Sbjct: 625 FLTRRPTLQAVREKGYIKDQVFGANLANLCQRENGTVPNFVKLCIEHVEAYGLDVDGIYR 684
Query: 1016 VSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVE 1195
VSGNLA IQKLRF VN +EKL+L+DS+WEDIHV+TGALKMFFRELPEPLF ++ F FV
Sbjct: 685 VSGNLAVIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVN 744
Query: 1196 AIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
AI KQ+ R+ VK L+++LP PN+DTM++LFRHLK+
Sbjct: 745 AI-KQEPRQRVAAVKDLIRQLPKPNQDTMQILFRHLKR 781
>ref|XP_859716.1| PREDICTED: similar to Rho GTPase activating protein 12 isoform 6
[Canis familiaris].
Length = 791
Score = 310 bits (793), Expect = 3e-84
Identities = 165/338 (48%), Positives = 222/338 (65%), Gaps = 3/338 (0%)
Frame = +2
Query: 305 EKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPE-NIDL 481
EK G L KI + GKK+RKNW +SW VL + F K KPE +DL
Sbjct: 410 EKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDL 469
Query: 482 CGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTP 658
GA +E A K+KSS+KNVF++ T G E L+QSD D +I DWF + + I
Sbjct: 470 KGATVEMASKDKSSKKNVFELKTRQGTELLIQSDNDTVINDWFKVLSSTI---------- 519
Query: 659 SRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFR-LHHSASDTSDKNRVKSRLKK 835
N + + + E+ + +++ +H+ R + S+ D+S++ + K LKK
Sbjct: 520 --NNQTVETDEAIEEEIPESPGIEKHDKEKDHKDPKKLRPMKVSSIDSSEQKKTKKNLKK 577
Query: 836 FITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYR 1015
F+TRRP+L+ ++EKG IKDQ+FG++L +C+REN TVP FVK CIE VE GL+VDGIYR
Sbjct: 578 FLTRRPTLQAVREKGYIKDQVFGANLANLCQRENGTVPNFVKLCIEHVEAYGLDVDGIYR 637
Query: 1016 VSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVE 1195
VSGNLA IQKLRF VN +EKL+L+DS+WEDIHV+TGALKMFFRELPEPLF ++ F FV
Sbjct: 638 VSGNLAVIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVN 697
Query: 1196 AIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
AI KQ+ R+ VK L+++LP PN+DTM++LFRHLK+
Sbjct: 698 AI-KQEPRQRVAAVKDLIRQLPKPNQDTMQILFRHLKR 734
>ref|XP_544216.2| PREDICTED: similar to Rho GTPase activating protein 12 isoform 1
[Canis familiaris].
Length = 843
Score = 310 bits (793), Expect = 3e-84
Identities = 165/338 (48%), Positives = 222/338 (65%), Gaps = 3/338 (0%)
Frame = +2
Query: 305 EKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPE-NIDL 481
EK G L KI + GKK+RKNW +SW VL + F K KPE +DL
Sbjct: 462 EKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDL 521
Query: 482 CGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTP 658
GA +E A K+KSS+KNVF++ T G E L+QSD D +I DWF + + I
Sbjct: 522 KGATVEMASKDKSSKKNVFELKTRQGTELLIQSDNDTVINDWFKVLSSTI---------- 571
Query: 659 SRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFR-LHHSASDTSDKNRVKSRLKK 835
N + + + E+ + +++ +H+ R + S+ D+S++ + K LKK
Sbjct: 572 --NNQTVETDEAIEEEIPESPGIEKHDKEKDHKDPKKLRPMKVSSIDSSEQKKTKKNLKK 629
Query: 836 FITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYR 1015
F+TRRP+L+ ++EKG IKDQ+FG++L +C+REN TVP FVK CIE VE GL+VDGIYR
Sbjct: 630 FLTRRPTLQAVREKGYIKDQVFGANLANLCQRENGTVPNFVKLCIEHVEAYGLDVDGIYR 689
Query: 1016 VSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVE 1195
VSGNLA IQKLRF VN +EKL+L+DS+WEDIHV+TGALKMFFRELPEPLF ++ F FV
Sbjct: 690 VSGNLAVIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVN 749
Query: 1196 AIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
AI KQ+ R+ VK L+++LP PN+DTM++LFRHLK+
Sbjct: 750 AI-KQEPRQRVAAVKDLIRQLPKPNQDTMQILFRHLKR 786
>ref|XP_859622.1| PREDICTED: similar to Rho GTPase activating protein 12 isoform 3
[Canis familiaris].
Length = 850
Score = 297 bits (760), Expect = 2e-80
Identities = 163/350 (46%), Positives = 221/350 (63%), Gaps = 15/350 (4%)
Frame = +2
Query: 305 EKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPE-NIDL 481
EK G L KI + GKK+RKNW +SW VL + F K KPE +DL
Sbjct: 457 EKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDL 516
Query: 482 CGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTP 658
GA +E A K+KSS+KNVF++ T G E L+QSD D +I DWF + + I
Sbjct: 517 KGATVEMASKDKSSKKNVFELKTRQGTELLIQSDNDTVINDWFKVLSSTI---------- 566
Query: 659 SRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFR-LHHSASDTSDKNRVKSRLKK 835
N ++ + + E+ + +++ +H+ R + S+ D+S++ + K LKK
Sbjct: 567 --NNQVLETDEAIEEEIPESPGIEKHDKEKDHKDPKKLRPMKVSSIDSSEQKKTKKNLKK 624
Query: 836 FITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYR 1015
F+TRRP+L+ ++EKG IKDQ+FG++L +C+REN TVP FVK CIE VE GL+VDGIYR
Sbjct: 625 FLTRRPTLQAVREKGYIKDQVFGANLANLCQRENGTVPNFVKLCIEHVEAYGLDVDGIYR 684
Query: 1016 VSGNLATIQKLRF------------IVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEP 1159
VSGNLA IQKLRF +EKL+L+DS+WEDIHV+TGALKMFFRELPEP
Sbjct: 685 VSGNLAVIQKLRFADLFKVIFKNFLFCFSDEKLDLNDSKWEDIHVITGALKMFFRELPEP 744
Query: 1160 LFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
LF ++ F FV AI KQ+ R+ VK L+++LP PN+DTM++LFRHLK+
Sbjct: 745 LFTFNHFNDFVNAI-KQEPRQRVAAVKDLIRQLPKPNQDTMQILFRHLKR 793
>ref|XP_859654.1| PREDICTED: similar to Rho GTPase activating protein 12 isoform 4
[Canis familiaris].
Length = 820
Score = 275 bits (703), Expect = 7e-74
Identities = 155/338 (45%), Positives = 207/338 (61%), Gaps = 3/338 (0%)
Frame = +2
Query: 305 EKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPE-NIDL 481
EK G L KI + GKK+RKNW +SW VL + F K KPE +DL
Sbjct: 457 EKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDL 516
Query: 482 CGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTP 658
GA +E A K+KSS+KNVF++ T G E L+QSD D +I DWF + + I
Sbjct: 517 KGATVEMASKDKSSKKNVFELKTRQGTELLIQSDNDTVINDWFKVLSSTI---------- 566
Query: 659 SRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFR-LHHSASDTSDKNRVKSRLKK 835
N + + + E+ + +++ +H+ R + S+ D+S++ + K LKK
Sbjct: 567 --NNQTVETDEAIEEEIPESPGIEKHDKEKDHKDPKKLRPMKVSSIDSSEQKKTKKNLKK 624
Query: 836 FITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYR 1015
F+TRRP+L+ ++EK EN TVP FVK CIE VE GL+VDGIYR
Sbjct: 625 FLTRRPTLQAVREK------------------ENGTVPNFVKLCIEHVEAYGLDVDGIYR 666
Query: 1016 VSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVE 1195
VSGNLA IQKLRF VN +EKL+L+DS+WEDIHV+TGALKMFFRELPEPLF ++ F FV
Sbjct: 667 VSGNLAVIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVN 726
Query: 1196 AIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
AI KQ+ R+ VK L+++LP PN+DTM++LFRHLK+
Sbjct: 727 AI-KQEPRQRVAAVKDLIRQLPKPNQDTMQILFRHLKR 763
>ref|XP_859557.1| PREDICTED: similar to Rho GTPase activating protein 12 isoform 2
[Canis familiaris].
Length = 316
Score = 270 bits (689), Expect = 3e-72
Identities = 137/270 (50%), Positives = 189/270 (70%), Gaps = 1/270 (0%)
Frame = +2
Query: 503 AKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTPSRNLELFK 682
+K+KSS+KNVF++ T G E L+QSD D +I DWF + + I N + +
Sbjct: 3 SKDKSSKKNVFELKTRQGTELLIQSDNDTVINDWFKVLSSTI------------NNQTVE 50
Query: 683 IQRSSSTELLSHYDSDIKEQKPEHRKSLMFR-LHHSASDTSDKNRVKSRLKKFITRRPSL 859
+ E+ + +++ +H+ R + S+ D+S++ + K LKKF+TRRP+L
Sbjct: 51 TDEAIEEEIPESPGIEKHDKEKDHKDPKKLRPMKVSSIDSSEQKKTKKNLKKFLTRRPTL 110
Query: 860 KTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYRVSGNLATI 1039
+ ++EKG IKDQ+FG++L +C+REN TVP FVK CIE VE GL+VDGIYRVSGNLA I
Sbjct: 111 QAVREKGYIKDQVFGANLANLCQRENGTVPNFVKLCIEHVEAYGLDVDGIYRVSGNLAVI 170
Query: 1040 QKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAIKKQDNN 1219
QKLRF VN +EKL+L+DS+WEDIHV+TGALKMFFRELPEPLF ++ F FV AI KQ+
Sbjct: 171 QKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVNAI-KQEPR 229
Query: 1220 TRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
R+ VK L+++LP PN+DTM++LFRHLK+
Sbjct: 230 QRVAAVKDLIRQLPKPNQDTMQILFRHLKR 259
>ref|XP_531645.2| PREDICTED: similar to Rho-GTPase-activating protein 9 [Canis
familiaris].
Length = 761
Score = 266 bits (679), Expect = 4e-71
Identities = 158/386 (40%), Positives = 227/386 (58%), Gaps = 46/386 (11%)
Frame = +2
Query: 284 PLEQLM-----VEKEGYLQKAKIADGGKK--LRKNWSTSWVVLSSRKIEFYKESKQQALS 442
PL Q++ VE G L KIA GG K + KNWS SWVVL+ + FY+E A S
Sbjct: 319 PLPQVLDDPHVVETLGLLNVTKIAPGGAKTSVEKNWSPSWVVLAGNSLMFYREPPAAAPS 378
Query: 443 NM--KTGHKPEN-IDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHA 613
++ G +PE+ +DL GA + + SSR+NV I TV G+EFLLQSD + + W A
Sbjct: 379 SLWGPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTVPGHEFLLQSDHEAELRAWHRA 438
Query: 614 IKNAIDRLPKDP-------------STPSRNLELFKIQRSSSTEL--LSHYDSDIKEQKP 748
++ I+RL + + LEL ++ S EL LS + D +E +P
Sbjct: 439 LRAVIERLVRGERWQVAGAGGRLGGADRENPLEL-RLSGSGPAELEELSGGEDDEEESEP 497
Query: 749 EHRKSLMFRLHHSAS---DTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHT 919
+ L S+ + +++NRV+++LK+ I +RP L++LQE+GL++DQ+FG L +
Sbjct: 498 VSKPLLRLSGRRSSGRCPEGTEQNRVRNKLKRLIAKRPPLQSLQERGLLRDQVFGCQLES 557
Query: 920 VCERENSTVPRFVKQCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVN------------ 1063
+C+RE TVP FV+ CI AV+KRGL+VDGIYRVSGNLA +QKLRF+V+
Sbjct: 558 LCQREGDTVPSFVRLCIAAVDKRGLDVDGIYRVSGNLAVVQKLRFLVDRERAITSDGRYV 617
Query: 1064 ------QEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAIKKQDNNTR 1225
QE +L+LD ++W+DIHVVTGALK+F RELP+PL P F A+ ++ R
Sbjct: 618 FPEQPGQEGRLDLDSAEWDDIHVVTGALKLFLRELPQPLVPPPLLPDFRAALALSESEQR 677
Query: 1226 IETVKSLVQKLPPPNRDTMKVLFRHL 1303
I ++ L+ +P PN DT++ L HL
Sbjct: 678 ISQIRELIGSMPRPNHDTLRYLLEHL 703
>ref|XP_546401.2| PREDICTED: similar to Rho GTPase-activating protein [Canis
familiaris].
Length = 1966
Score = 112 bits (279), Expect = 1e-24
Identities = 56/160 (35%), Positives = 96/160 (60%), Gaps = 1/160 (0%)
Frame = +2
Query: 827 LKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDG 1006
L+ F+ RP+ + L+++G++K+++FG L VP+ ++ C +E+ G+ VDG
Sbjct: 224 LRTFMKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDG 282
Query: 1007 IYRVSGNLATIQKLRFIVNQEEKLNLDDSQW-EDIHVVTGALKMFFRELPEPLFPYSFFE 1183
IYR+SG + IQ+LR + E +L + +DIH V K++FRELP PL Y +E
Sbjct: 283 IYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYE 342
Query: 1184 RFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHL 1303
+F +A+ + R+ + ++Q+LPPP+ T++ L RHL
Sbjct: 343 KFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHL 382
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,216,718
Number of extensions: 1104675
Number of successful extensions: 3651
Number of sequences better than 1.0e-05: 103
Number of HSP's gapped: 3555
Number of HSP's successfully gapped: 103
Length of query: 446
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 340
Effective length of database: 15,340,888
Effective search space: 5215901920
Effective search space used: 5215901920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013378
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013378
(1340 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098473.1| rho GTPase-activating protein 15 [Bos taurus]. 789 0.0
Alignment gi|NP_001095711.1| rho GTPase-activating protein 12 [Bos taurus]. 318 5e-87
Alignment gi|XP_002687609.1| PREDICTED: Rho GTPase activating protein 9-l... 277 1e-74
Alignment gi|XP_584663.4| PREDICTED: Rho GTPase activating protein 9 isof... 277 1e-74
Alignment gi|XP_002692116.1| PREDICTED: Rho GTPase activating protein 21-... 135 1e-31
Alignment gi|XP_581232.3| PREDICTED: Rho GTPase activating protein 21 [Bo... 135 1e-31
Alignment gi|XP_002695993.1| PREDICTED: Rho GTPase-activating protein 23-... 123 3e-28
Alignment gi|XP_601322.4| PREDICTED: Rho GTPase activating protein 23 [Bo... 123 3e-28
Alignment gi|NP_001179016.1| rho GTPase-activating protein 32 [Bos taurus]. 112 1e-24
Alignment gi|XP_002699271.1| PREDICTED: Rho GTPase-activating protein-lik... 112 1e-24
>ref|NP_001098473.1| rho GTPase-activating protein 15 [Bos taurus].
Length = 471
Score = 789 bits (2038), Expect = 0.0
Identities = 393/419 (93%), Positives = 407/419 (97%)
Frame = +2
Query: 65 MQKSTNSDTSVETLNPTRQATGAVQMRIKNANSHHDRLSQSKSMILTDVGKVTEPISRHR 244
MQKSTNSD VETLNPTRQ TGAVQMRIKNANSHHDRLSQSKSMILT+VGKVTEPISRHR
Sbjct: 1 MQKSTNSDIPVETLNPTRQGTGAVQMRIKNANSHHDRLSQSKSMILTEVGKVTEPISRHR 60
Query: 245 RNHSQHILKDVIPPLEQLMVEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKES 424
RNHSQHILKDVIPPLEQLMVEKEGYLQKAKIADGGKKLRKNW+TSW+VLSSRKIEFYKES
Sbjct: 61 RNHSQHILKDVIPPLEQLMVEKEGYLQKAKIADGGKKLRKNWTTSWIVLSSRKIEFYKES 120
Query: 425 KQQALSNMKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDW 604
KQQALSNMKTG+KPE++DLCGA IEWAKEKSSRKNVFQITT+SGNEFLLQSDIDFIILDW
Sbjct: 121 KQQALSNMKTGNKPESVDLCGAHIEWAKEKSSRKNVFQITTLSGNEFLLQSDIDFIILDW 180
Query: 605 FHAIKNAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHH 784
FHAIKNAIDRLPKDPS+ SRNLELFKIQRSSSTELLSHYDSD KEQKPEHRKSLMFRLHH
Sbjct: 181 FHAIKNAIDRLPKDPSSHSRNLELFKIQRSSSTELLSHYDSDTKEQKPEHRKSLMFRLHH 240
Query: 785 SASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQ 964
SASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHT+CERE STVPRFVKQ
Sbjct: 241 SASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTLCEREKSTVPRFVKQ 300
Query: 965 CIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFR 1144
CIEAVEKRGL+VDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFR
Sbjct: 301 CIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFR 360
Query: 1145 ELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK*VIK 1321
+LPEPLFPYSFFE+FVEAIKKQDNNTRIE +KSLVQKLPPPNRDTMKVLF HL K V +
Sbjct: 361 DLPEPLFPYSFFEQFVEAIKKQDNNTRIEAIKSLVQKLPPPNRDTMKVLFGHLTKIVAR 419
>ref|NP_001095711.1| rho GTPase-activating protein 12 [Bos taurus].
Length = 793
Score = 318 bits (816), Expect = 5e-87
Identities = 184/409 (44%), Positives = 248/409 (60%), Gaps = 9/409 (2%)
Frame = +2
Query: 110 PTRQATGAVQMRIKNANSHHDRLSQS-------KSMILTDVGKVTEPISRHRRNHSQHIL 268
P A+ Q I + S RL + S I+ D P S + + +H
Sbjct: 341 PKYNASSQQQREIIKSRSLDRRLQEPIVLSKWRHSTIVLDANDKESP-SASKPCYPEHES 399
Query: 269 KDVIPPLEQLMVEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNM 448
P + EK G L KI + GKK+RKNW +SW VL + F K
Sbjct: 400 SPSSPKHQDTGQEKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFG 459
Query: 449 KTGHKPE-NIDLCGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKN 622
KPE +DL GA IE A K+KSS+KNVF++ T G E L+QSD D +I DWF + +
Sbjct: 460 SNQSKPEFTVDLKGATIEMASKDKSSKKNVFELKTRQGTELLIQSDNDTVINDWFKVLSS 519
Query: 623 AIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTS 802
I +P E + + S + H D + +++P+ +S S+ D+S
Sbjct: 520 TISNQTVEPD------EAIEEEIPDSPGIEKH-DKEKDQKEPKKLRSAKV----SSIDSS 568
Query: 803 DKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVE 982
++ + K LKKF+TRRP+L+ ++EKG IKDQ+FG++L +C+RENSTVP+FVK CIE VE
Sbjct: 569 EQKKTKKNLKKFLTRRPTLQAVREKGYIKDQVFGANLSNLCQRENSTVPKFVKLCIEHVE 628
Query: 983 KRGLNVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPL 1162
+ GL+VDGIYRVSGNLA IQKLRF VN +EKL+L DS+WEDIHV+TGALKMFFRELPEPL
Sbjct: 629 QYGLDVDGIYRVSGNLAVIQKLRFAVNHDEKLDLKDSKWEDIHVITGALKMFFRELPEPL 688
Query: 1163 FPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
F ++ F FV AI KQ+ R+ VK L+++LP PN+DTM++LFRHLK+
Sbjct: 689 FTFNHFNDFVNAI-KQEPRQRVSAVKDLIKQLPKPNQDTMQILFRHLKR 736
>ref|XP_002687609.1| PREDICTED: Rho GTPase activating protein 9-like [Bos taurus].
Length = 745
Score = 277 bits (709), Expect = 1e-74
Identities = 151/360 (41%), Positives = 220/360 (61%), Gaps = 26/360 (7%)
Frame = +2
Query: 302 VEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNM--KTGHKPEN- 472
VEK G L KIA GG+KLRKNW SWVVL+ + FY+E A + G +PE+
Sbjct: 334 VEKSGLLNMTKIAQGGRKLRKNWGPSWVVLAGNSLVFYREPPPTAPATAWGPAGSRPESS 393
Query: 473 IDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPS 652
+DL GA + + SSR++V I TV G+EFLLQSD + + W A++ I+RL ++
Sbjct: 394 VDLRGAALAHGRHLSSRRHVLHIRTVPGHEFLLQSDQEAELRAWHSALRAVIERLDRENP 453
Query: 653 TPSRNLELFKIQRSSSTEL--LSHYDSDIKEQKPEHRKSLMFRLHHSAS---DTSDKNRV 817
R + S EL LS + + +E +P + L S+S +T+++NRV
Sbjct: 454 LEGR------LSGSGPAELEELSPGEDEEEESEPVSKSLLRIGGRRSSSRCPETAEQNRV 507
Query: 818 KSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLN 997
+++LK+ I +RP L+TLQE+GL++DQ+FG L ++C+RE TVP FV+ C+ AV+KRGL+
Sbjct: 508 RNKLKRLIAKRPPLQTLQERGLLRDQVFGCQLESLCQREGDTVPSFVRLCVAAVDKRGLD 567
Query: 998 VDGIYRVSGNLATIQKLRFIVN------------------QEEKLNLDDSQWEDIHVVTG 1123
VDGIYRVSGNLA +QKLRF+V+ QE +L+LD ++W+DIHV+TG
Sbjct: 568 VDGIYRVSGNLAVVQKLRFLVDRERAITSDGRYMFPEQPGQEGRLDLDSAEWDDIHVITG 627
Query: 1124 ALKMFFRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHL 1303
ALK+F RELP+PL P F A+ ++ + ++ L+ +P PN DT++ L HL
Sbjct: 628 ALKLFLRELPQPLVPSLLLPDFRAAVALTESEQCLSQIQELISSMPKPNHDTLRYLLEHL 687
>ref|XP_584663.4| PREDICTED: Rho GTPase activating protein 9 isoform 1 [Bos taurus].
Length = 745
Score = 277 bits (709), Expect = 1e-74
Identities = 151/360 (41%), Positives = 220/360 (61%), Gaps = 26/360 (7%)
Frame = +2
Query: 302 VEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNM--KTGHKPEN- 472
VEK G L KIA GG+KLRKNW SWVVL+ + FY+E A + G +PE+
Sbjct: 334 VEKSGLLNMTKIAQGGRKLRKNWGPSWVVLAGNSLVFYREPPPTAPATAWGPAGSRPESS 393
Query: 473 IDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPS 652
+DL GA + + SSR++V I TV G+EFLLQSD + + W A++ I+RL ++
Sbjct: 394 VDLRGAALAHGRHLSSRRHVLHIRTVPGHEFLLQSDQEAELRAWHSALRAVIERLDRENP 453
Query: 653 TPSRNLELFKIQRSSSTEL--LSHYDSDIKEQKPEHRKSLMFRLHHSAS---DTSDKNRV 817
R + S EL LS + + +E +P + L S+S +T+++NRV
Sbjct: 454 LEGR------LSGSGPAELEELSPGEDEEEESEPVSKSLLRIGGRRSSSRCPETAEQNRV 507
Query: 818 KSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLN 997
+++LK+ I +RP L+TLQE+GL++DQ+FG L ++C+RE TVP FV+ C+ AV+KRGL+
Sbjct: 508 RNKLKRLIAKRPPLQTLQERGLLRDQVFGCQLESLCQREGDTVPSFVRLCVAAVDKRGLD 567
Query: 998 VDGIYRVSGNLATIQKLRFIVN------------------QEEKLNLDDSQWEDIHVVTG 1123
VDGIYRVSGNLA +QKLRF+V+ QE +L+LD ++W+DIHV+TG
Sbjct: 568 VDGIYRVSGNLAVVQKLRFLVDRERAITSDGRYMFPEQPGQEGRLDLDSAEWDDIHVITG 627
Query: 1124 ALKMFFRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHL 1303
ALK+F RELP+PL P F A+ ++ + ++ L+ +P PN DT++ L HL
Sbjct: 628 ALKLFLRELPQPLVPSLLLPDFRAAVALTESEQCLSQIQELISSMPKPNHDTLRYLLEHL 687
>ref|XP_002692116.1| PREDICTED: Rho GTPase activating protein 21-like [Bos taurus].
Length = 1980
Score = 135 bits (339), Expect = 1e-31
Identities = 118/412 (28%), Positives = 197/412 (47%), Gaps = 26/412 (6%)
Frame = +2
Query: 149 KNANSHHDRLSQSKSMILTDVGKVTEPISRHRRNHSQHILKDVIPPLEQLMVEKEGYLQ- 325
++A +S K + + D K +E S R++ S + D KEG+L
Sbjct: 914 EDAKLSFKHVSSLKGIKILDSQKSSED-SGSRKDSSSEVFSDAA---------KEGWLHF 963
Query: 326 KAKIADGGKKLR---KNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPENIDLCGAQI 496
+ + D GK++ + W +VVL + YK+ ++Q + + +P +++ C I
Sbjct: 964 RPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEE--EQPISVNACLIDI 1021
Query: 497 EWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTPSRNLEL 676
+++ K RKNVF++TT S E L Q++ +L W I+ + + +D +R+L
Sbjct: 1022 SYSETK--RKNVFRLTT-SDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTNRDLIS 1078
Query: 677 FKIQRSSST------------------ELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTS 802
+I+ +S + L ++ + Q P K R S DTS
Sbjct: 1079 RRIKEYNSLMSKAEPLPKTPRQSLSIRQTLLGAKAEPRTQSPHSPKEESERKLLSKDDTS 1138
Query: 803 DKNRVKSRLKKFITRRPSL--KTLQEKGLIKDQIFGSHLHTVCERE-NSTVPRFVKQCIE 973
+ K +K I PS+ KT ++K FG L N +P V C +
Sbjct: 1139 PP-KDKGTWRKGI---PSIMRKTFEKKPTATGT-FGVRLDDCPPAHTNRYIPLIVDICCK 1193
Query: 974 AVEKRGLNVDGIYRVSGNLATIQKLRFIVNQE-EKLNLDDSQWEDIHVVTGALKMFFREL 1150
VE+RGL GIYRV GN A I ++ +N+ +++ D +W D++V++ LK FFR+L
Sbjct: 1194 LVEERGLEYTGIYRVPGNNAAISSMQEELNKGMADIDIQDDKWRDLNVISSLLKSFFRKL 1253
Query: 1151 PEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLK 1306
PEPLF + F+EA +K+D R++T+K L+ LP + +T+K L HLK
Sbjct: 1254 PEPLFTNDKYADFIEANRKEDPLDRLKTLKRLIHDLPEHHYETLKFLSAHLK 1305
>ref|XP_581232.3| PREDICTED: Rho GTPase activating protein 21 [Bos taurus].
Length = 1980
Score = 135 bits (339), Expect = 1e-31
Identities = 118/412 (28%), Positives = 197/412 (47%), Gaps = 26/412 (6%)
Frame = +2
Query: 149 KNANSHHDRLSQSKSMILTDVGKVTEPISRHRRNHSQHILKDVIPPLEQLMVEKEGYLQ- 325
++A +S K + + D K +E S R++ S + D KEG+L
Sbjct: 914 EDAKLSFKHVSSLKGIKILDSQKSSED-SGSRKDSSSEVFSDAA---------KEGWLHF 963
Query: 326 KAKIADGGKKLR---KNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPENIDLCGAQI 496
+ + D GK++ + W +VVL + YK+ ++Q + + +P +++ C I
Sbjct: 964 RPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEE--EQPISVNACLIDI 1021
Query: 497 EWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTPSRNLEL 676
+++ K RKNVF++TT S E L Q++ +L W I+ + + +D +R+L
Sbjct: 1022 SYSETK--RKNVFRLTT-SDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTNRDLIS 1078
Query: 677 FKIQRSSST------------------ELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTS 802
+I+ +S + L ++ + Q P K R S DTS
Sbjct: 1079 RRIKEYNSLMSKAEPLPKTPRQSLSIRQTLLGAKAEPRTQSPHSPKEESERKLLSKDDTS 1138
Query: 803 DKNRVKSRLKKFITRRPSL--KTLQEKGLIKDQIFGSHLHTVCERE-NSTVPRFVKQCIE 973
+ K +K I PS+ KT ++K FG L N +P V C +
Sbjct: 1139 PP-KDKGTWRKGI---PSIMRKTFEKKPTATGT-FGVRLDDCPPAHTNRYIPLIVDICCK 1193
Query: 974 AVEKRGLNVDGIYRVSGNLATIQKLRFIVNQE-EKLNLDDSQWEDIHVVTGALKMFFREL 1150
VE+RGL GIYRV GN A I ++ +N+ +++ D +W D++V++ LK FFR+L
Sbjct: 1194 LVEERGLEYTGIYRVPGNNAAISSMQEELNKGMADIDIQDDKWRDLNVISSLLKSFFRKL 1253
Query: 1151 PEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLK 1306
PEPLF + F+EA +K+D R++T+K L+ LP + +T+K L HLK
Sbjct: 1254 PEPLFTNDKYADFIEANRKEDPLDRLKTLKRLIHDLPEHHYETLKFLSAHLK 1305
>ref|XP_002695993.1| PREDICTED: Rho GTPase-activating protein 23-like [Bos taurus].
Length = 1241
Score = 123 bits (309), Expect = 3e-28
Identities = 101/367 (27%), Positives = 168/367 (45%), Gaps = 32/367 (8%)
Frame = +2
Query: 302 VEKEGYL-------QKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQ--------A 436
+ +EG+L +K K A GG + W + L +R + KE ++ A
Sbjct: 661 IRREGWLYYKQVLTKKGKKAGGGLR---QWKRVYAALRARSLSLSKERREPGPAAAGAAA 717
Query: 437 LSNMKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAI 616
+ P I C I +++ K R++VF++TT E+L Q++ +L W AI
Sbjct: 718 AVAGEDEAAPVCIGSCLVDISYSETK--RRHVFRLTTADFCEYLFQAEDRDDMLGWIRAI 775
Query: 617 KNAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLM--------- 769
+ +DP ++ L K+ + +SH + P+ + L
Sbjct: 776 RENSRAEGEDPGCANQALISKKL---NDYRKVSHSSGPKADSSPKGSRGLGGLKSEFLKQ 832
Query: 770 -----FRLHHSASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCE-- 928
FR + + D + S+ I+ +++ + FG L C+
Sbjct: 833 STARGFRTQDQPAGSKDDSVSTSKTPWGIS------IIKKNKKAAPRAFGVRLEE-CQPA 885
Query: 929 RENSTVPRFVKQCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQEE-KLNLDDSQWED 1105
EN VP V C VE RGL GIYRV GN A + L+ +N+ +NL D +W+D
Sbjct: 886 TENQRVPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINLQDERWQD 945
Query: 1106 IHVVTGALKMFFRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMK 1285
++V++ LK FFR+LPEPLF + F+EA + +D+ R++T++ L++ LP +T+K
Sbjct: 946 LNVISSLLKSFFRKLPEPLFTDDKYNDFIEANRIEDSRERLKTLRKLIRDLPGHYYETLK 1005
Query: 1286 VLFRHLK 1306
L HLK
Sbjct: 1006 FLVSHLK 1012
>ref|XP_601322.4| PREDICTED: Rho GTPase activating protein 23 [Bos taurus].
Length = 1198
Score = 123 bits (309), Expect = 3e-28
Identities = 101/367 (27%), Positives = 168/367 (45%), Gaps = 32/367 (8%)
Frame = +2
Query: 302 VEKEGYL-------QKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQ--------A 436
+ +EG+L +K K A GG + W + L +R + KE ++ A
Sbjct: 671 IRREGWLYYKQVLTKKGKKAGGGLR---QWKRVYAALRARSLSLSKERREPGPAAAGAAA 727
Query: 437 LSNMKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAI 616
+ P I C I +++ K R++VF++TT E+L Q++ +L W AI
Sbjct: 728 AVAGEDEAAPVCIGSCLVDISYSETK--RRHVFRLTTADFCEYLFQAEDRDDMLGWIRAI 785
Query: 617 KNAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLM--------- 769
+ +DP ++ L K+ + +SH + P+ + L
Sbjct: 786 RENSRAEGEDPGCANQALISKKL---NDYRKVSHSSGPKADSSPKGSRGLGGLKSEFLKQ 842
Query: 770 -----FRLHHSASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCE-- 928
FR + + D + S+ I+ +++ + FG L C+
Sbjct: 843 STARGFRTQDQPAGSKDDSVSTSKTPWGIS------IIKKNKKAAPRAFGVRLEE-CQPA 895
Query: 929 RENSTVPRFVKQCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQEE-KLNLDDSQWED 1105
EN VP V C VE RGL GIYRV GN A + L+ +N+ +NL D +W+D
Sbjct: 896 TENQRVPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINLQDERWQD 955
Query: 1106 IHVVTGALKMFFRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMK 1285
++V++ LK FFR+LPEPLF + F+EA + +D+ R++T++ L++ LP +T+K
Sbjct: 956 LNVISSLLKSFFRKLPEPLFTDDKYNDFIEANRIEDSRERLKTLRKLIRDLPGHYYETLK 1015
Query: 1286 VLFRHLK 1306
L HLK
Sbjct: 1016 FLVSHLK 1022
>ref|NP_001179016.1| rho GTPase-activating protein 32 [Bos taurus].
Length = 2083
Score = 112 bits (279), Expect = 1e-24
Identities = 56/160 (35%), Positives = 96/160 (60%), Gaps = 1/160 (0%)
Frame = +2
Query: 827 LKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDG 1006
L+ F+ RP+ + L+++G++K+++FG L VP+ ++ C +E+ G+ VDG
Sbjct: 346 LRTFMKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDG 404
Query: 1007 IYRVSGNLATIQKLRFIVNQEEKLNLDDSQW-EDIHVVTGALKMFFRELPEPLFPYSFFE 1183
IYR+SG + IQ+LR + E +L + +DIH V K++FRELP PL Y +E
Sbjct: 405 IYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYE 464
Query: 1184 RFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHL 1303
+F +A+ + R+ + ++Q+LPPP+ T++ L RHL
Sbjct: 465 KFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHL 504
>ref|XP_002699271.1| PREDICTED: Rho GTPase-activating protein-like [Bos taurus].
Length = 2059
Score = 112 bits (279), Expect = 1e-24
Identities = 56/160 (35%), Positives = 96/160 (60%), Gaps = 1/160 (0%)
Frame = +2
Query: 827 LKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDG 1006
L+ F+ RP+ + L+++G++K+++FG L VP+ ++ C +E+ G+ VDG
Sbjct: 346 LRTFMKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDG 404
Query: 1007 IYRVSGNLATIQKLRFIVNQEEKLNLDDSQW-EDIHVVTGALKMFFRELPEPLFPYSFFE 1183
IYR+SG + IQ+LR + E +L + +DIH V K++FRELP PL Y +E
Sbjct: 405 IYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYE 464
Query: 1184 RFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHL 1303
+F +A+ + R+ + ++Q+LPPP+ T++ L RHL
Sbjct: 465 KFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHL 504
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,192,376
Number of extensions: 1073091
Number of successful extensions: 3539
Number of sequences better than 1.0e-05: 100
Number of HSP's gapped: 3443
Number of HSP's successfully gapped: 101
Length of query: 446
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 341
Effective length of database: 14,207,134
Effective search space: 4844632694
Effective search space used: 4844632694
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013378
(1340 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133302.1| PREDICTED: rho GTPase-activating protein 15-... 408 e-114
Alignment gi|XP_003130760.1| PREDICTED: rho GTPase-activating protein 12 ... 317 1e-86
Alignment gi|XP_003358061.1| PREDICTED: rho GTPase-activating protein 27-... 295 4e-80
Alignment gi|XP_003359469.1| PREDICTED: rho GTPase-activating protein 15-... 293 1e-79
Alignment gi|XP_003126369.2| PREDICTED: rho GTPase-activating protein 9-l... 282 3e-76
Alignment gi|XP_003126355.2| PREDICTED: rho GTPase-activating protein 9-l... 263 1e-70
Alignment gi|XP_003130818.1| PREDICTED: rho GTPase-activating protein 21 ... 135 4e-32
Alignment gi|XP_003132101.2| PREDICTED: rho GTPase-activating protein 23,... 121 8e-28
Alignment gi|XP_003127127.2| PREDICTED: rho GTPase-activating protein 33 ... 112 6e-25
Alignment gi|XP_003131857.2| PREDICTED: active breakpoint cluster region-... 107 1e-23
>ref|XP_003133302.1| PREDICTED: rho GTPase-activating protein 15-like [Sus scrofa].
Length = 220
Score = 408 bits (1049), Expect = e-114
Identities = 211/234 (90%), Positives = 211/234 (90%)
Frame = +2
Query: 65 MQKSTNSDTSVETLNPTRQATGAVQMRIKNANSHHDRLSQSKSMILTDVGKVTEPISRHR 244
MQKSTNSDTSVETLNPTRQATGAVQMRIKNANSHHDRLSQSKSMILTDVGKVTEP
Sbjct: 1 MQKSTNSDTSVETLNPTRQATGAVQMRIKNANSHHDRLSQSKSMILTDVGKVTEP----- 55
Query: 245 RNHSQHILKDVIPPLEQLMVEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKES 424
MVEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKES
Sbjct: 56 ------------------MVEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKES 97
Query: 425 KQQALSNMKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDW 604
KQQALSNMKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDW
Sbjct: 98 KQQALSNMKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDW 157
Query: 605 FHAIKNAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSL 766
FHAIKNAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSL
Sbjct: 158 FHAIKNAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSL 211
>ref|XP_003130760.1| PREDICTED: rho GTPase-activating protein 12 [Sus scrofa].
Length = 844
Score = 317 bits (812), Expect = 1e-86
Identities = 169/338 (50%), Positives = 227/338 (67%), Gaps = 3/338 (0%)
Frame = +2
Query: 305 EKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPE-NIDL 481
EK G L KI++ GKK+RKNW +SW VL + F K KPE +DL
Sbjct: 463 EKYGLLNVTKISENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDL 522
Query: 482 CGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTP 658
GA IE A K+KSS+KNVF++ T G E L+QSD D +I DWF + + I +P
Sbjct: 523 RGATIEMASKDKSSKKNVFELKTRQGTELLIQSDNDTVINDWFKVLSSTISNQVVEPD-- 580
Query: 659 SRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSAS-DTSDKNRVKSRLKK 835
E + + S + H +++ +H+ FR +S D+S++ + K LKK
Sbjct: 581 ----EAIEEETPDSPGIEKH------DREKDHKDPKKFRSTKVSSIDSSEQKKTKKNLKK 630
Query: 836 FITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYR 1015
F+TRRP+L+ ++EKG IKDQ+FG++L +C+RENSTVP+FVK CIE VE+ GL++DGIYR
Sbjct: 631 FLTRRPTLQAVREKGYIKDQVFGANLANLCQRENSTVPKFVKLCIEHVEEYGLDIDGIYR 690
Query: 1016 VSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVE 1195
VSGNLA IQKLRF VN +EKL+L+DS+WEDIHV+TGALKMFFRELPEPLF ++ F FV
Sbjct: 691 VSGNLAVIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVN 750
Query: 1196 AIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
AI KQ+ R+ VK L+++LP PN+DTM++LFRHLK+
Sbjct: 751 AI-KQEPRQRVSAVKDLIRQLPKPNQDTMQILFRHLKR 787
>ref|XP_003358061.1| PREDICTED: rho GTPase-activating protein 27-like, partial [Sus
scrofa].
Length = 646
Score = 295 bits (755), Expect = 4e-80
Identities = 160/342 (46%), Positives = 222/342 (64%), Gaps = 8/342 (2%)
Frame = +2
Query: 302 VEKEGYLQKAKIADGGKKLRK-NWSTSWVVLSSRKIEFYKESKQQALSNMKTGHK---PE 469
++K G L + K D GK+LRK +WS SW VL + F+K+SK A ++ K PE
Sbjct: 260 LDKAGVLHRTKTVDKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKLSTPE 319
Query: 470 -NIDLCGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPK 643
++L GA + WA K+KSS+KNV ++ + G+E+L+Q D + II W AI I L
Sbjct: 320 YTVELKGASLTWAPKDKSSKKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQELSA 379
Query: 644 D--PSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTSDKNRV 817
D P S + +F S+E L D E +P SD ++V
Sbjct: 380 DLPPEEESESSAVF-----GSSERLGSCRED--EARPGAGVP--------GGLESDVSKV 424
Query: 818 KSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLN 997
+ +L+KF+ RRP+L++L+EKG IKDQ+FG L +CERE S+VPRFV+QCI AVE RGL
Sbjct: 425 RYKLRKFLLRRPTLQSLREKGYIKDQVFGCALAVLCERERSSVPRFVQQCIRAVEARGLE 484
Query: 998 VDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSF 1177
+DG+YR+SGNLATIQKLR+ V+ +E+L+LDD +WED+HV+TGALK+FFRELPEPLFP+ +
Sbjct: 485 IDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFCY 544
Query: 1178 FERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHL 1303
F +F+ AIK QD R V+ LV+ LP PN DT+++L +HL
Sbjct: 545 FRQFITAIKLQDQAQRSRCVRDLVRSLPAPNHDTLRLLIQHL 586
>ref|XP_003359469.1| PREDICTED: rho GTPase-activating protein 15-like [Sus scrofa].
Length = 201
Score = 293 bits (751), Expect = 1e-79
Identities = 148/167 (88%), Positives = 154/167 (92%)
Frame = +2
Query: 707 LLSHYDSDIKEQKPEHRKSLMFRLHHSASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLI 886
L H+ ++ + +H +FRLHHSASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLI
Sbjct: 20 LFCHFFLELPLRTLQH----VFRLHHSASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLI 75
Query: 887 KDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQ 1066
KDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQ
Sbjct: 76 KDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQ 135
Query: 1067 EEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAIKK 1207
EEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAI K
Sbjct: 136 EEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAISK 182
>ref|XP_003126369.2| PREDICTED: rho GTPase-activating protein 9-like [Sus scrofa].
Length = 556
Score = 282 bits (721), Expect = 3e-76
Identities = 157/372 (42%), Positives = 228/372 (61%), Gaps = 32/372 (8%)
Frame = +2
Query: 284 PLEQLM-----VEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNM 448
PL Q++ VEK G L KIA GG+KLRKNW+ SWVVL+ + FY+E A S +
Sbjct: 133 PLPQVLDDPHEVEKSGLLNMTKIAQGGRKLRKNWAPSWVVLAGNSLVFYREPPPTAPSTL 192
Query: 449 --KTGHKPEN-IDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIK 619
G +PE+ +DL GA + + SSR+NV I TV G+EFLLQSD + + W A++
Sbjct: 193 WGPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTVPGHEFLLQSDQETELRAWHRALR 252
Query: 620 NAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSASDT 799
I+RL ++ LEL ++ S EL + +E++ E + RL S ++
Sbjct: 253 EVIERLDRE-----NPLEL-RLSGSGPAELGELSAGEDEEEESEPVSKPLLRLGGSRRNS 306
Query: 800 S------DKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVK 961
S +++RV+++LK+ I +RP L+TLQE+GL++DQ+FG L ++C+RE TVP FV+
Sbjct: 307 SRCPEGAEQSRVRNKLKRLIAKRPPLQTLQERGLLRDQVFGCQLESLCQREGDTVPSFVR 366
Query: 962 QCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVN------------------QEEKLNLD 1087
CI AV+KRGL+VDGIYRVSGNLA +QKLRF+V+ QE +L+LD
Sbjct: 367 LCIAAVDKRGLDVDGIYRVSGNLAVVQKLRFLVDRERAITSDGRYMFPEQQGQEGRLDLD 426
Query: 1088 DSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPP 1267
++W+DIHV+TGALK+F RELP+PL P F A+ ++ R+ ++ L+ +P P
Sbjct: 427 SAEWDDIHVITGALKLFLRELPQPLVPPLLLPHFRAALALAESEQRLSQIQELISSMPKP 486
Query: 1268 NRDTMKVLFRHL 1303
N DT++ L HL
Sbjct: 487 NHDTLRYLLEHL 498
>ref|XP_003126355.2| PREDICTED: rho GTPase-activating protein 9-like [Sus scrofa].
Length = 742
Score = 263 bits (673), Expect = 1e-70
Identities = 152/372 (40%), Positives = 215/372 (57%), Gaps = 32/372 (8%)
Frame = +2
Query: 284 PLEQLM-----VEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNM 448
PL Q++ VEK G L KIA GG+KLRKNW+ SWVVL+ + FY+E SN
Sbjct: 319 PLPQVLDDPHEVEKSGLLNMTKIAQGGRKLRKNWAPSWVVLAGNSLVFYREXXXXXXSNC 378
Query: 449 K--TGHKPEN-IDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIK 619
+ G +PE+ +DL GA + + SS QI TV G+EFLLQSD + + W A++
Sbjct: 379 QGPAGSRPESSVDLRGAALAHGRHLSSXXXXXQIRTVPGHEFLLQSDQETELRAWHRALR 438
Query: 620 NAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSASDT 799
I+RL ++ LEL ++ S EL + +E++ E + RL S ++
Sbjct: 439 EVIERLDRE-----NPLEL-RLSGSGPAELGELSAGEDEEEESEPVSKPLLRLGGSRRNS 492
Query: 800 SD------KNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVK 961
S+ K+ I +RP L+TLQE+GL++DQ+FG L ++C+RE TVP FV+
Sbjct: 493 SEGXXXXXXXXXXXXXKRLIAKRPPLQTLQERGLLRDQVFGCQLESLCQREGDTVPSFVR 552
Query: 962 QCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVN------------------QEEKLNLD 1087
CI AV+KRGL+VDGIYRVSGNLA +QKLRF+V+ QE +L+LD
Sbjct: 553 LCIAAVDKRGLDVDGIYRVSGNLAVVQKLRFLVDRERAITSDGRYMFPEQQGQEGRLDLD 612
Query: 1088 DSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPP 1267
++W+DIHV+TGALK+F RELP+PL P F A+ R+ ++ L+ +P P
Sbjct: 613 SAEWDDIHVITGALKLFLRELPQPLVPPLLLPHFRAALGXXXXEQRLSQIQELISSMPKP 672
Query: 1268 NRDTMKVLFRHL 1303
N DT++ L HL
Sbjct: 673 NHDTLRYLLEHL 684
>ref|XP_003130818.1| PREDICTED: rho GTPase-activating protein 21 [Sus scrofa].
Length = 1955
Score = 135 bits (341), Expect = 4e-32
Identities = 121/412 (29%), Positives = 197/412 (47%), Gaps = 26/412 (6%)
Frame = +2
Query: 149 KNANSHHDRLSQSKSMILTDVGKVTEPISRHRRNHSQHILKDVIPPLEQLMVEKEGYLQ- 325
++A +S K + + D K +E S R++ S + D KEG+L
Sbjct: 895 EDAKLSFKHVSSLKGIKIMDSQKSSED-SGSRKDSSSEVFSDAA---------KEGWLHF 944
Query: 326 KAKIADGGKKLR---KNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPENIDLCGAQI 496
+ + D GK++ + W +VVL + YKE ++Q + + +P +++ C I
Sbjct: 945 RPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKEKREQTAPSEE--EQPISVNACLIDI 1002
Query: 497 EWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTPSRNL-- 670
+++ K RKNVF++TT S E L Q++ +L W I+ + +D +R+L
Sbjct: 1003 SYSETK--RKNVFRLTT-SDCECLFQAEDRDDMLAWIKTIQESSTLNEEDTGVTNRDLIS 1059
Query: 671 --------------ELFKIQRSSST--ELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTS 802
+L K R S + + L ++ + Q P K R S DTS
Sbjct: 1060 RRIKEYNSLMSKAEQLPKTPRQSLSIRQTLLGAKAEPRTQSPHSPKEESERKLLSKDDTS 1119
Query: 803 DKNRVKSRLKKFITRRPSL--KTLQEKGLIKDQIFGSHLHTVCERE-NSTVPRFVKQCIE 973
+ K +K I PS+ KT ++K FG L N +P V C +
Sbjct: 1120 PP-KDKGTWRKGI---PSIMRKTFEKKPTATGT-FGVRLDDCPPAHTNRYIPLIVDICCK 1174
Query: 974 AVEKRGLNVDGIYRVSGNLATIQKLRFIVNQE-EKLNLDDSQWEDIHVVTGALKMFFREL 1150
VE+RGL GIYRV GN A I ++ +N+ +++ D +W D++V++ LK FFR+L
Sbjct: 1175 LVEERGLEYTGIYRVPGNNAAISSMQEELNKGMADIDIQDDKWRDLNVISSLLKSFFRKL 1234
Query: 1151 PEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLK 1306
PEPLF + F+EA +K+D R++T+K L+ LP + +T+K L HLK
Sbjct: 1235 PEPLFTNDKYADFIEANRKEDPLDRLKTLKRLIHDLPEHHYETLKFLSAHLK 1286
>ref|XP_003132101.2| PREDICTED: rho GTPase-activating protein 23, partial [Sus scrofa].
Length = 1209
Score = 121 bits (304), Expect = 8e-28
Identities = 101/362 (27%), Positives = 167/362 (46%), Gaps = 27/362 (7%)
Frame = +2
Query: 302 VEKEGYL-------QKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQ--------- 433
+ +EG+L +K K A GG + W + L +R + KE ++
Sbjct: 748 IRREGWLYYKQVLTKKGKKAGGGLR---QWKRVYAALRARSLSLSKERREPGPAAAAGAA 804
Query: 434 ALSNMKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHA 613
A + P I C I +++ K R++VF++TT E+L Q++ +L W A
Sbjct: 805 AAVAGEDEAAPVCIGSCLVDISYSETK--RRHVFRLTTADFCEYLFQAEDRDDMLGWIRA 862
Query: 614 IKNAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSL-----MFRL 778
I+ +DP ++ L K+ + +SH + P+ + L F
Sbjct: 863 IRENSRAEGEDPGCANQALISKKL---NDYRKVSHSSGPKADASPKGSRGLGGLKSEFLK 919
Query: 779 HHSASD--TSDKNRVKSRLKKFITRRP-SLKTLQEKGLIKDQIFGSHLHTVCE--RENST 943
+A T D+ + P + +++ + FG L C+ EN
Sbjct: 920 QSTARGLRTQDQPAGSKDDSAATPKTPWGINIIKKNKKAAPRAFGVRLEE-CQPATENQR 978
Query: 944 VPRFVKQCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQEE-KLNLDDSQWEDIHVVT 1120
VP V C VE RGL GIYRV GN A + L+ +N+ +NL D +W+D++V++
Sbjct: 979 VPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINLQDERWQDLNVIS 1038
Query: 1121 GALKMFFRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRH 1300
LK FFR+LPEPLF + F+EA + +D+ R++T++ L++ LP +T+K L H
Sbjct: 1039 SLLKSFFRKLPEPLFTDDKYNDFIEANRIEDSRERMKTLRKLIRDLPGHYYETLKFLVGH 1098
Query: 1301 LK 1306
LK
Sbjct: 1099 LK 1100
>ref|XP_003127127.2| PREDICTED: rho GTPase-activating protein 33 [Sus scrofa].
Length = 1311
Score = 112 bits (279), Expect = 6e-25
Identities = 58/169 (34%), Positives = 97/169 (57%), Gaps = 1/169 (0%)
Frame = +2
Query: 806 KNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEK 985
+ ++ L+ F+ RPS + L+++G+++ ++FG L VP+ ++ C E +E
Sbjct: 431 RGKLAGLLRTFMRSRPSRQRLRQRGILRQRVFGCDLGEHLSNSGQDVPQVLRCCSEFIEA 490
Query: 986 RGLNVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQW-EDIHVVTGALKMFFRELPEPL 1162
G+ VDGIYR+SG + IQ+LR + E L + +DIH V+ K++FRELP PL
Sbjct: 491 HGV-VDGIYRLSGVSSNIQRLRHEFDSERIPELSGPAFLQDIHSVSSLCKLYFRELPNPL 549
Query: 1163 FPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
Y + +F EA+ R+ V ++Q+LPPP+ T++ L RHL +
Sbjct: 550 LTYQLYGKFSEAMSVPGEEERLVRVHDVIQQLPPPHYRTLEYLLRHLAR 598
>ref|XP_003131857.2| PREDICTED: active breakpoint cluster region-related protein isoform 1
[Sus scrofa].
Length = 769
Score = 107 bits (268), Expect = 1e-23
Identities = 67/177 (37%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Frame = +2
Query: 791 SDTSDKNRVKSRLK-KFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQC 967
+D + N +K KF +R SLK K + +FG + V +RE S VP V+QC
Sbjct: 520 TDVIEMNGIKVEFSMKFTSRDMSLKRTPSKK--QTGVFGVKISVVTKRERSKVPYIVRQC 577
Query: 968 IEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQEEK---LNLDDSQWEDIHVVTGALKMF 1138
+E VEKRG+ GIYR+SG IQ L+ + + K L L D DI+ + G LK++
Sbjct: 578 VEEVEKRGIEEVGIYRISGVATDIQALKAVFDANNKDILLMLSDM---DINAIAGTLKLY 634
Query: 1139 FRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
FRELPEPL + F+E I D + + L++ LP PN T L HLK+
Sbjct: 635 FRELPEPLLTDRLYPAFMEGIALSDPAAKENCMMHLLRSLPDPNLITFLFLLEHLKR 691
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,909,598
Number of extensions: 681090
Number of successful extensions: 2165
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 2103
Number of HSP's successfully gapped: 57
Length of query: 446
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 344
Effective length of database: 8,804,438
Effective search space: 3028726672
Effective search space used: 3028726672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013378
(1340 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_722542.2| rho GTPase-activating protein 15 isoform 1 [Mus... 716 0.0
Alignment gi|NP_083553.2| rho GTPase-activating protein 12 isoform 2 [Mus... 314 1e-85
Alignment gi|NP_001034781.1| rho GTPase-activating protein 12 isoform 1 [... 313 3e-85
Alignment gi|NP_001192165.1| rho GTPase-activating protein 27 isoform 1 [... 302 3e-82
Alignment gi|NP_598476.2| rho GTPase-activating protein 27 isoform 2 [Mus... 302 3e-82
Alignment gi|NP_666123.2| Rho GTPase activating protein 9 [Mus musculus]. 286 2e-77
Alignment gi|NP_001020548.1| rho GTPase-activating protein 15 isoform 2 [... 273 2e-73
Alignment gi|NP_001074833.3| rho GTPase-activating protein 21 isoform 2 [... 138 1e-32
Alignment gi|NP_001121556.2| rho GTPase-activating protein 21 isoform 1 [... 138 1e-32
Alignment gi|NP_067468.2| rho GTPase-activating protein 23 [Mus musculus]. 124 2e-28
>ref|NP_722542.2| rho GTPase-activating protein 15 isoform 1 [Mus musculus].
Length = 481
Score = 716 bits (1847), Expect = 0.0
Identities = 360/421 (85%), Positives = 384/421 (91%)
Frame = +2
Query: 59 CNMQKSTNSDTSVETLNPTRQATGAVQMRIKNANSHHDRLSQSKSMILTDVGKVTEPISR 238
C++Q STN D S+E LN QATGAVQMRIKNANSH DR SQ+KSMILTD GKVTEPISR
Sbjct: 7 CSVQTSTNCDNSLEILNSAHQATGAVQMRIKNANSHQDRQSQTKSMILTDAGKVTEPISR 66
Query: 239 HRRNHSQHILKDVIPPLEQLMVEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYK 418
HRRNHSQH+LKDVIPPLE MVEKEGYLQKAKIADGGKKLRKNWSTSW+VLS RKIEFYK
Sbjct: 67 HRRNHSQHVLKDVIPPLEHPMVEKEGYLQKAKIADGGKKLRKNWSTSWIVLSGRKIEFYK 126
Query: 419 ESKQQALSNMKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIIL 598
+SKQQAL NMKT H E++DLCGA IEWAKEKSSRK+VFQITTVSGNEFLLQSDIDF+IL
Sbjct: 127 DSKQQALPNMKTRHNVESVDLCGAHIEWAKEKSSRKSVFQITTVSGNEFLLQSDIDFLIL 186
Query: 599 DWFHAIKNAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRL 778
DWF AIKNAIDRLPK+PS S LELF +QRSSS+EL SH D KEQKPEHRKS MFRL
Sbjct: 187 DWFQAIKNAIDRLPKNPSCGS--LELFNLQRSSSSELPSHCHIDRKEQKPEHRKSFMFRL 244
Query: 779 HHSASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFV 958
HHSASDTSDKNRVKSRLKKFI+RRPSLKTLQEKGLIKDQIFGSHLHTVCERE+STVP FV
Sbjct: 245 HHSASDTSDKNRVKSRLKKFISRRPSLKTLQEKGLIKDQIFGSHLHTVCEREHSTVPWFV 304
Query: 959 KQCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMF 1138
KQCIEAVEKRGL+VDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMF
Sbjct: 305 KQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMF 364
Query: 1139 FRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK*VI 1318
FREL EPLFPYSFFERFVEAIKKQD+N +IET++SLV++LPPPN DTMK+LFRHL K V
Sbjct: 365 FRELSEPLFPYSFFERFVEAIKKQDSNEKIETMRSLVKRLPPPNHDTMKILFRHLTKIVA 424
Query: 1319 K 1321
K
Sbjct: 425 K 425
>ref|NP_083553.2| rho GTPase-activating protein 12 isoform 2 [Mus musculus].
Length = 813
Score = 314 bits (804), Expect = 1e-85
Identities = 181/389 (46%), Positives = 249/389 (64%), Gaps = 3/389 (0%)
Frame = +2
Query: 152 NANSHHDR-LSQSKSMILTDVGKVTEPISRHRRNHSQHILKDVIPPLEQLMVEKEGYLQK 328
NA+S R + +S+S+ ++ EPI + HS +L EK G L
Sbjct: 389 NASSQQQREIIKSRSLDR----RLQEPIVLTKWRHSTIVLDS-----NDKGQEKYGLLNV 439
Query: 329 AKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPE-NIDLCGAQIEWA 505
KI + GKK+RKNW +SW VL + F K KPE +DL GA IE A
Sbjct: 440 TKITENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDLKGAVIEMA 499
Query: 506 -KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTPSRNLELFK 682
K+KSS+KNVF++ T G E L+QSD D +I DWF + + I+ + +
Sbjct: 500 SKDKSSKKNVFELKTRQGTELLIQSDNDAVINDWFKVLSSTINNQVAEADEAAE------ 553
Query: 683 IQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTSDKNRVKSRLKKFITRRPSLK 862
+ + + + +D + K+QK E +K + + S+ D+S++ + K LKKF+TRRP+L+
Sbjct: 554 -EETPDSPGVEKHDKE-KDQK-ELKK--LRSMKGSSMDSSEQKKTKKNLKKFLTRRPTLQ 608
Query: 863 TLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYRVSGNLATIQ 1042
++EKG IKDQ+FGS+L +C+REN TVP+FVK CIE VE+ GL+VDGIYRVSGNLA IQ
Sbjct: 609 AVREKGYIKDQVFGSNLANLCQRENGTVPKFVKLCIEHVEEHGLDVDGIYRVSGNLAVIQ 668
Query: 1043 KLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAIKKQDNNT 1222
KLRF VN +EKL+L+DS+WEDIHV+TGALKMFFRELPEPLF ++ F FV AI KQ+
Sbjct: 669 KLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVNAI-KQEPRQ 727
Query: 1223 RIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
R+ VK L+++LP PN+DTM++LFRHLK+
Sbjct: 728 RVTAVKDLIRQLPKPNQDTMQILFRHLKR 756
>ref|NP_001034781.1| rho GTPase-activating protein 12 isoform 1 [Mus musculus].
Length = 838
Score = 313 bits (801), Expect = 3e-85
Identities = 169/337 (50%), Positives = 228/337 (67%), Gaps = 2/337 (0%)
Frame = +2
Query: 305 EKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPE-NIDL 481
EK G L KI + GKK+RKNW +SW VL + F K KPE +DL
Sbjct: 457 EKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDL 516
Query: 482 CGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTP 658
GA IE A K+KSS+KNVF++ T G E L+QSD D +I DWF + + I+ +
Sbjct: 517 KGAVIEMASKDKSSKKNVFELKTRQGTELLIQSDNDAVINDWFKVLSSTINNQVAEADEA 576
Query: 659 SRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTSDKNRVKSRLKKF 838
+ + + + + +D + K+QK E +K + + S+ D+S++ + K LKKF
Sbjct: 577 AE-------EETPDSPGVEKHDKE-KDQK-ELKK--LRSMKGSSMDSSEQKKTKKNLKKF 625
Query: 839 ITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYRV 1018
+TRRP+L+ ++EKG IKDQ+FGS+L +C+REN TVP+FVK CIE VE+ GL+VDGIYRV
Sbjct: 626 LTRRPTLQAVREKGYIKDQVFGSNLANLCQRENGTVPKFVKLCIEHVEEHGLDVDGIYRV 685
Query: 1019 SGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEA 1198
SGNLA IQKLRF VN +EKL+L+DS+WEDIHV+TGALKMFFRELPEPLF ++ F FV A
Sbjct: 686 SGNLAVIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVNA 745
Query: 1199 IKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
I KQ+ R+ VK L+++LP PN+DTM++LFRHLK+
Sbjct: 746 I-KQEPRQRVTAVKDLIRQLPKPNQDTMQILFRHLKR 781
>ref|NP_001192165.1| rho GTPase-activating protein 27 isoform 1 [Mus musculus].
Length = 869
Score = 302 bits (774), Expect = 3e-82
Identities = 173/406 (42%), Positives = 247/406 (60%), Gaps = 9/406 (2%)
Frame = +2
Query: 113 TRQATGAVQMRIKNANSHHDRLSQSKSMILTDVGKVTEPISRHRRNHSQH--ILKDVIPP 286
T Q T +R+++ + + S + ++ +V P R R SQ PP
Sbjct: 412 TNQFTQEQWVRLEDQHGKPYFYNPEDSSVQWELPQVPIPAPRSVRKSSQDSDTPAQASPP 471
Query: 287 LEQLM-VEKEGYLQKAKIADGGKKLRK-NWSTSWVVLSSRKIEFYKESKQQALSNMKTGH 460
E++ ++K G L + K D GK+LRK +WSTSW VL + F+K+SK A ++
Sbjct: 472 EEKIKTLDKAGVLHRTKTVDKGKRLRKKHWSTSWTVLEGGVLTFFKDSKTSAAGGLRQPS 531
Query: 461 K---PE-NIDLCGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNA 625
K PE ++L GA + WA K+KSS+KNV ++ + G+E+L+Q D + II W AI
Sbjct: 532 KLSTPEYTVELKGASLSWAPKDKSSKKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAEG 591
Query: 626 IDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTSD 805
I L D E SS L S + D+++ S SD
Sbjct: 592 ISELSADLLQGEEG-EPSSADFGSSERLGSWREEDVRQNAASPSLS-------PGGLESD 643
Query: 806 KNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEK 985
+RV+ +L+KF+ RRP+L++L++KG IKDQ+FG L +CERE S VPRFV+QCI VE
Sbjct: 644 LSRVRHKLRKFLQRRPTLQSLRDKGYIKDQVFGCALAQLCERERSPVPRFVQQCIRTVEA 703
Query: 986 RGLNVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLF 1165
RGL++DG+YR+SGNLATIQKLR+ V+ +E+L+LDD +WED+HV+TGALK+FFRELPEPLF
Sbjct: 704 RGLDIDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLF 763
Query: 1166 PYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHL 1303
P+S F +F+ AIK QD R V+ LV+ LP PN+DT+++L +HL
Sbjct: 764 PFSHFHQFIAAIKLQDPAQRSRCVRDLVRTLPAPNQDTLRLLIQHL 809
>ref|NP_598476.2| rho GTPase-activating protein 27 isoform 2 [Mus musculus].
Length = 670
Score = 302 bits (774), Expect = 3e-82
Identities = 173/406 (42%), Positives = 247/406 (60%), Gaps = 9/406 (2%)
Frame = +2
Query: 113 TRQATGAVQMRIKNANSHHDRLSQSKSMILTDVGKVTEPISRHRRNHSQH--ILKDVIPP 286
T Q T +R+++ + + S + ++ +V P R R SQ PP
Sbjct: 213 TNQFTQEQWVRLEDQHGKPYFYNPEDSSVQWELPQVPIPAPRSVRKSSQDSDTPAQASPP 272
Query: 287 LEQLM-VEKEGYLQKAKIADGGKKLRK-NWSTSWVVLSSRKIEFYKESKQQALSNMKTGH 460
E++ ++K G L + K D GK+LRK +WSTSW VL + F+K+SK A ++
Sbjct: 273 EEKIKTLDKAGVLHRTKTVDKGKRLRKKHWSTSWTVLEGGVLTFFKDSKTSAAGGLRQPS 332
Query: 461 K---PE-NIDLCGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNA 625
K PE ++L GA + WA K+KSS+KNV ++ + G+E+L+Q D + II W AI
Sbjct: 333 KLSTPEYTVELKGASLSWAPKDKSSKKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAEG 392
Query: 626 IDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTSD 805
I L D E SS L S + D+++ S SD
Sbjct: 393 ISELSADLLQGEEG-EPSSADFGSSERLGSWREEDVRQNAASPSLS-------PGGLESD 444
Query: 806 KNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEK 985
+RV+ +L+KF+ RRP+L++L++KG IKDQ+FG L +CERE S VPRFV+QCI VE
Sbjct: 445 LSRVRHKLRKFLQRRPTLQSLRDKGYIKDQVFGCALAQLCERERSPVPRFVQQCIRTVEA 504
Query: 986 RGLNVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLF 1165
RGL++DG+YR+SGNLATIQKLR+ V+ +E+L+LDD +WED+HV+TGALK+FFRELPEPLF
Sbjct: 505 RGLDIDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLF 564
Query: 1166 PYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHL 1303
P+S F +F+ AIK QD R V+ LV+ LP PN+DT+++L +HL
Sbjct: 565 PFSHFHQFIAAIKLQDPAQRSRCVRDLVRTLPAPNQDTLRLLIQHL 610
>ref|NP_666123.2| Rho GTPase activating protein 9 [Mus musculus].
Length = 473
Score = 286 bits (733), Expect = 2e-77
Identities = 156/361 (43%), Positives = 225/361 (62%), Gaps = 28/361 (7%)
Frame = +2
Query: 305 EKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNM---KTGHKPEN- 472
E+ G L KIA GG+KLRKNW +WVVL+ + FY+E Q+ S + G +PE+
Sbjct: 61 ERSGLLNMTKIAQGGRKLRKNWGPAWVVLTGSSLVFYRERPPQSASLQGWARAGSRPESS 120
Query: 473 IDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPS 652
+DL GA + ++ SSR+NV I TV G+EFLLQSD + + DW A++ I+RL ++
Sbjct: 121 VDLRGAALASGRQLSSRRNVLHIRTVPGHEFLLQSDEETELRDWHRALRTVIERLDRE-- 178
Query: 653 TPSRNLELFKIQRSSSTEL--LSHYDSDIKEQKPEHRKSLMFRLHHSAS----DTSDKNR 814
LEL ++ S EL LS + D E +P + + ++S T KNR
Sbjct: 179 ---NPLEL-RLSGSGPAELAELSAGEDDELESEPVSKSLMRLGSRRTSSRCAEGTDQKNR 234
Query: 815 VKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGL 994
V+++LK+ I +RP+L++LQE+GL +DQ+FG L ++C+RE TVP FV+ C+EAV+K+GL
Sbjct: 235 VRNKLKRLIAKRPTLQSLQERGLFRDQVFGCQLESLCQREGDTVPSFVRLCVEAVDKKGL 294
Query: 995 NVDGIYRVSGNLATIQKLRFIVN------------------QEEKLNLDDSQWEDIHVVT 1120
+VDGIYRVSGNLA +QKLRF+V+ QE KL+LD ++W+DIHVVT
Sbjct: 295 DVDGIYRVSGNLAVVQKLRFLVDRERAVTSDGRYMFPEQAGQEGKLDLDSAEWDDIHVVT 354
Query: 1121 GALKMFFRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRH 1300
GALK+FFRELP+PL P F +A++ + + ++ L+ LP PN DT+K + H
Sbjct: 355 GALKLFFRELPQPLVPALLLPDFRDALELSEPEQCLSKIQKLIDSLPRPNHDTLKYILEH 414
Query: 1301 L 1303
L
Sbjct: 415 L 415
>ref|NP_001020548.1| rho GTPase-activating protein 15 isoform 2 [Mus musculus].
Length = 186
Score = 273 bits (698), Expect = 2e-73
Identities = 135/171 (78%), Positives = 146/171 (85%)
Frame = +2
Query: 59 CNMQKSTNSDTSVETLNPTRQATGAVQMRIKNANSHHDRLSQSKSMILTDVGKVTEPISR 238
C++Q STN D S+E LN QATGAVQMRIKNANSH DR SQ+KSMILTD GKVTEPISR
Sbjct: 7 CSVQTSTNCDNSLEILNSAHQATGAVQMRIKNANSHQDRQSQTKSMILTDAGKVTEPISR 66
Query: 239 HRRNHSQHILKDVIPPLEQLMVEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYK 418
HRRNHSQH+LKDVIPPLE MVEKEGYLQKAKIADGGKKLRKNWSTSW+VLS RKIEFYK
Sbjct: 67 HRRNHSQHVLKDVIPPLEHPMVEKEGYLQKAKIADGGKKLRKNWSTSWIVLSGRKIEFYK 126
Query: 419 ESKQQALSNMKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLL 571
+SKQQAL NMKT H E++DLCGA IEWAKEKSSRK+VFQ+ FLL
Sbjct: 127 DSKQQALPNMKTRHNVESVDLCGAHIEWAKEKSSRKSVFQVRMPPVLNFLL 177
>ref|NP_001074833.3| rho GTPase-activating protein 21 isoform 2 [Mus musculus].
Length = 1945
Score = 138 bits (347), Expect = 1e-32
Identities = 117/416 (28%), Positives = 197/416 (47%), Gaps = 30/416 (7%)
Frame = +2
Query: 149 KNANSHHDRLSQSKSMILTDVGKVTEPISRHRRNHSQHILKDVIPPLEQLMVEKEGYLQ- 325
++A +S K + +TD K +E S R+ S + D +EG+LQ
Sbjct: 885 EDAKLSFKHVSSLKGIKITDSQKSSED-SGSRKGSSSEVFSDAA---------REGWLQF 934
Query: 326 KAKIADGGKKLR---KNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPENIDLCGAQI 496
+ + D GK++ + W +VVL + YK+ ++Q + + +P +++ C I
Sbjct: 935 RPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDRREQTTPSEE--EQPISVNACLIDI 992
Query: 497 EWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTPSRNL-- 670
+++ K R+NVF++TT S E L Q++ +L W I+ + + +D +R+L
Sbjct: 993 SYSETK--RRNVFRLTT-SDCECLFQAEDRDDMLSWIKTIQESSNLNEEDTGVTNRDLIS 1049
Query: 671 --------------ELFKIQRSSST--ELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTS 802
+L K R S + + L S+ K Q P K R S DTS
Sbjct: 1050 RRIKEYNSLLSKTEQLPKTPRQSLSIRQTLLGAKSEPKTQSPHSPKEESERKLLSKDDTS 1109
Query: 803 D-------KNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVK 961
+ + S ++K ++P+ G+ D +H N +P V
Sbjct: 1110 PPKDKGTWRRGIPSIVRKTFEKKPA--ATGTFGVRLDDCPPAHT-------NRYIPLIVD 1160
Query: 962 QCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQE-EKLNLDDSQWEDIHVVTGALKMF 1138
C + VE+RGL GIYRV GN A I ++ +N+ +++ D +W D++V++ LK F
Sbjct: 1161 ICCKLVEERGLEYTGIYRVPGNNAAISSMQEELNKGMADIDIQDDKWRDLNVISSLLKSF 1220
Query: 1139 FRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLK 1306
FR+LPEPLF + F+EA +K+D R+ T+K L+ LP + +T+K L HLK
Sbjct: 1221 FRKLPEPLFTNDKYADFIEANRKEDPLDRLRTLKRLIHDLPEHHFETLKFLSAHLK 1276
>ref|NP_001121556.2| rho GTPase-activating protein 21 isoform 1 [Mus musculus].
Length = 1955
Score = 138 bits (347), Expect = 1e-32
Identities = 117/416 (28%), Positives = 197/416 (47%), Gaps = 30/416 (7%)
Frame = +2
Query: 149 KNANSHHDRLSQSKSMILTDVGKVTEPISRHRRNHSQHILKDVIPPLEQLMVEKEGYLQ- 325
++A +S K + +TD K +E S R+ S + D +EG+LQ
Sbjct: 895 EDAKLSFKHVSSLKGIKITDSQKSSED-SGSRKGSSSEVFSDAA---------REGWLQF 944
Query: 326 KAKIADGGKKLR---KNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPENIDLCGAQI 496
+ + D GK++ + W +VVL + YK+ ++Q + + +P +++ C I
Sbjct: 945 RPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDRREQTTPSEE--EQPISVNACLIDI 1002
Query: 497 EWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTPSRNL-- 670
+++ K R+NVF++TT S E L Q++ +L W I+ + + +D +R+L
Sbjct: 1003 SYSETK--RRNVFRLTT-SDCECLFQAEDRDDMLSWIKTIQESSNLNEEDTGVTNRDLIS 1059
Query: 671 --------------ELFKIQRSSST--ELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTS 802
+L K R S + + L S+ K Q P K R S DTS
Sbjct: 1060 RRIKEYNSLLSKTEQLPKTPRQSLSIRQTLLGAKSEPKTQSPHSPKEESERKLLSKDDTS 1119
Query: 803 D-------KNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVK 961
+ + S ++K ++P+ G+ D +H N +P V
Sbjct: 1120 PPKDKGTWRRGIPSIVRKTFEKKPA--ATGTFGVRLDDCPPAHT-------NRYIPLIVD 1170
Query: 962 QCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQE-EKLNLDDSQWEDIHVVTGALKMF 1138
C + VE+RGL GIYRV GN A I ++ +N+ +++ D +W D++V++ LK F
Sbjct: 1171 ICCKLVEERGLEYTGIYRVPGNNAAISSMQEELNKGMADIDIQDDKWRDLNVISSLLKSF 1230
Query: 1139 FRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLK 1306
FR+LPEPLF + F+EA +K+D R+ T+K L+ LP + +T+K L HLK
Sbjct: 1231 FRKLPEPLFTNDKYADFIEANRKEDPLDRLRTLKRLIHDLPEHHFETLKFLSAHLK 1286
>ref|NP_067468.2| rho GTPase-activating protein 23 [Mus musculus].
Length = 1277
Score = 124 bits (311), Expect = 2e-28
Identities = 103/362 (28%), Positives = 173/362 (47%), Gaps = 27/362 (7%)
Frame = +2
Query: 302 VEKEGYL-------QKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQ--------A 436
+ +EG+L +K K A GG + W + VL +R + KE ++ A
Sbjct: 479 IRREGWLYYKQILTKKGKKAGGGLR---QWKRVYAVLRARSLSLSKERREPGPAAAGAAA 535
Query: 437 LSNMKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAI 616
+ P I C I +++ K R++VF++TT E+L Q++ +L W AI
Sbjct: 536 AGAGEDEAAPVCIGSCLVDISYSETK--RRHVFRLTTADFCEYLFQAEDRDDMLGWIRAI 593
Query: 617 KNAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSASD 796
+ +DP ++ L K+ + +SH + P+ + L
Sbjct: 594 RENSRAEGEDPGCANQALISKKL---NDYRKVSHSSGPKADSSPKGSRGLGGLKSEFLKQ 650
Query: 797 TSDKNRVKSRLKKFITRRPSL---KTLQEKGLIKD------QIFGSHLHTVCE--RENST 943
T+ + ++++ + ++ S+ KT +IK + FG L C+ EN
Sbjct: 651 TAVRG-LRTQEQPPGSKEDSVAAPKTPWGINIIKKNKKAAPRAFGIRLEE-CQPATENQR 708
Query: 944 VPRFVKQCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQ-EEKLNLDDSQWEDIHVVT 1120
VP V C VE RGL GIYRV GN A + L+ +N+ +NL D +W+D++V++
Sbjct: 709 VPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPSDINLQDERWQDLNVIS 768
Query: 1121 GALKMFFRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRH 1300
LK FFR+LPEPLF + F+EA + +D+ R++T++ L++ LP +T+K L H
Sbjct: 769 SLLKAFFRKLPEPLFTDDKYNDFIEANRIEDSRERMKTLRKLIRDLPGHYYETLKFLVGH 828
Query: 1301 LK 1306
LK
Sbjct: 829 LK 830
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,989,530
Number of extensions: 955627
Number of successful extensions: 3187
Number of sequences better than 1.0e-05: 105
Number of HSP's gapped: 3085
Number of HSP's successfully gapped: 105
Length of query: 446
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 341
Effective length of database: 12,463,779
Effective search space: 4250148639
Effective search space used: 4250148639
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013378
(1340 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060930.3| rho GTPase-activating protein 15 [Homo sapiens]. 798 0.0
Alignment gi|NP_060757.4| rho GTPase-activating protein 12 [Homo sapiens]. 314 1e-85
Alignment gi|NP_954976.1| rho GTPase-activating protein 27 isoform a [Hom... 305 8e-83
Alignment gi|NP_001073625.1| rho GTPase-activating protein 9 isoform 3 [H... 275 5e-74
Alignment gi|NP_115885.2| rho GTPase-activating protein 9 isoform 1 [Homo... 275 5e-74
Alignment gi|NP_001073626.1| rho GTPase-activating protein 9 isoform 2 [H... 253 2e-67
Alignment gi|NP_065875.3| rho GTPase-activating protein 21 [Homo sapiens]. 138 1e-32
Alignment gi|NP_001186346.1| rho GTPase-activating protein 23 [Homo sapie... 120 2e-27
Alignment gi|NP_001166101.1| rho GTPase-activating protein 33 isoform 2 [... 112 1e-24
Alignment gi|NP_443180.2| rho GTPase-activating protein 33 isoform 1 [Hom... 112 1e-24
>ref|NP_060930.3| rho GTPase-activating protein 15 [Homo sapiens].
Length = 475
Score = 798 bits (2061), Expect = 0.0
Identities = 401/419 (95%), Positives = 407/419 (97%)
Frame = +2
Query: 65 MQKSTNSDTSVETLNPTRQATGAVQMRIKNANSHHDRLSQSKSMILTDVGKVTEPISRHR 244
MQKSTNSDTSVETLN TRQ TGAVQMRIKNANSHHDRLSQSKSMILTDVGKVTEPISRHR
Sbjct: 1 MQKSTNSDTSVETLNSTRQGTGAVQMRIKNANSHHDRLSQSKSMILTDVGKVTEPISRHR 60
Query: 245 RNHSQHILKDVIPPLEQLMVEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKES 424
RNHSQHILKDVIPPLEQLMVEKEGYLQKAKIADGGKKLRKNWSTSW+VLSSR+IEFYKES
Sbjct: 61 RNHSQHILKDVIPPLEQLMVEKEGYLQKAKIADGGKKLRKNWSTSWIVLSSRRIEFYKES 120
Query: 425 KQQALSNMKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDW 604
KQQALSNMKTGHKPE++DLCGA IEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDW
Sbjct: 121 KQQALSNMKTGHKPESVDLCGAHIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDW 180
Query: 605 FHAIKNAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHH 784
FHAIKNAIDRLPKD S PSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHH
Sbjct: 181 FHAIKNAIDRLPKDSSCPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHH 240
Query: 785 SASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQ 964
SASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLH VCERENSTVP FVKQ
Sbjct: 241 SASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQ 300
Query: 965 CIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFR 1144
CIEAVEKRGL+VDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFR
Sbjct: 301 CIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFR 360
Query: 1145 ELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK*VIK 1321
ELPEPLFPYSFFE+FVEAIKKQDNNTRIE VKSLVQKLPPPNRDTMKVLF HL K V K
Sbjct: 361 ELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAK 419
>ref|NP_060757.4| rho GTPase-activating protein 12 [Homo sapiens].
Length = 846
Score = 314 bits (805), Expect = 1e-85
Identities = 168/337 (49%), Positives = 229/337 (67%), Gaps = 2/337 (0%)
Frame = +2
Query: 305 EKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPE-NIDL 481
EK G L KIA+ GKK+RKNW +SW VL + F K KPE +DL
Sbjct: 465 EKYGLLNVTKIAENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDL 524
Query: 482 CGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTP 658
GA IE A K+KSS+KNVF++ T G E L+QSD D +I DWF + + I+ +
Sbjct: 525 KGATIEMASKDKSSKKNVFELKTRQGTELLIQSDNDTVINDWFKVLSSTINNQAVETD-- 582
Query: 659 SRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTSDKNRVKSRLKKF 838
E + + S + H D ++++ + +K F++ S+ D+S++ + K LKKF
Sbjct: 583 ----EGIEEEIPDSPGIEKH---DKEKEQKDPKKLRSFKV--SSIDSSEQKKTKKNLKKF 633
Query: 839 ITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVDGIYRV 1018
+TRRP+L+ ++EKG IKDQ+FGS+L +C+REN TVP+FVK CIE VE+ GL++DGIYRV
Sbjct: 634 LTRRPTLQAVREKGYIKDQVFGSNLANLCQRENGTVPKFVKLCIEHVEEHGLDIDGIYRV 693
Query: 1019 SGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEA 1198
SGNLA IQKLRF VN +EKL+L+DS+WEDIHV+TGALKMFFRELPEPLF ++ F FV A
Sbjct: 694 SGNLAVIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVNA 753
Query: 1199 IKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
I KQ+ R+ VK L+++LP PN+DTM++LFRHL++
Sbjct: 754 I-KQEPRQRVAAVKDLIRQLPKPNQDTMQILFRHLRR 789
>ref|NP_954976.1| rho GTPase-activating protein 27 isoform a [Homo sapiens].
Length = 548
Score = 305 bits (780), Expect = 8e-83
Identities = 162/340 (47%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Frame = +2
Query: 302 VEKEGYLQKAKIADGGKKLRK-NWSTSWVVLSSRKIEFYKESKQQALSNMKTGHK---PE 469
++K G L + K AD GK+LRK +WS SW VL + F+K+SK A ++ K PE
Sbjct: 156 LDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPE 215
Query: 470 -NIDLCGAQIEWA-KEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPK 643
++L GA + WA K+KSSRKNV ++ + G+E+L+Q D + II W AI I L
Sbjct: 216 YTVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQELSA 275
Query: 644 DPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTSDKNRVKS 823
+ P E ++ SS L S +E++ + R + SD ++V+
Sbjct: 276 E--LPPEESESSRVDFGSSERLGSW-----QEKEEDARPNAAAPALGPVGLESDLSKVRH 328
Query: 824 RLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLNVD 1003
+L+KF+ RRP+L++L+EKG IKDQ+FG L +CERE S VPRFV+QCI AVE RGL++D
Sbjct: 329 KLRKFLQRRPTLQSLREKGYIKDQVFGCALAALCERERSRVPRFVQQCIRAVEARGLDID 388
Query: 1004 GIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFE 1183
G+YR+SGNLATIQKLR+ V+ +E+L+LDD +WED+HV+TGALK+FFRELPEPLFP+S F
Sbjct: 389 GLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFSHFR 448
Query: 1184 RFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHL 1303
+F+ AIK QD R V+ LV+ LP PN DT+++LF+HL
Sbjct: 449 QFIAAIKLQDQARRSRCVRDLVRSLPAPNHDTLRMLFQHL 488
>ref|NP_001073625.1| rho GTPase-activating protein 9 isoform 3 [Homo sapiens].
Length = 547
Score = 275 bits (704), Expect = 5e-74
Identities = 156/371 (42%), Positives = 226/371 (60%), Gaps = 31/371 (8%)
Frame = +2
Query: 284 PLEQLM-----VEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNM 448
PL QL+ VEK G L KIA GG+KLRKNW SWVVL+ + FY+E A S+
Sbjct: 128 PLPQLLDDPHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSG 187
Query: 449 --KTGHKPEN-IDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIK 619
G +PE+ +DL GA + + SSR+NV I T+ G+EFLLQSD + + W A++
Sbjct: 188 WGPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALR 247
Query: 620 NAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSAS-- 793
I+RL ++ LEL ++ S EL + D +E++ E + RL S
Sbjct: 248 TVIERLDRE-----NPLEL-RLSGSGPAELSAGED---EEEESELVSKPLLRLSSRRSSI 298
Query: 794 ---DTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQ 964
+ +++NRV+++LK+ I +RP L++LQE+GL++DQ+FG L ++C+RE TVP F++
Sbjct: 299 RGPEGTEQNRVRNKLKRLIAKRPPLQSLQERGLLRDQVFGCQLESLCQREGDTVPSFLRL 358
Query: 965 CIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVN------------------QEEKLNLDD 1090
CI AV+KRGL+VDGIYRVSGNLA +QKLRF+V+ QE +L+LD
Sbjct: 359 CIAAVDKRGLDVDGIYRVSGNLAVVQKLRFLVDRERAVTSDGRYVFPEQPGQEGRLDLDS 418
Query: 1091 SQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPN 1270
++W+DIHVVTGALK+F RELP+PL P F A+ ++ + ++ L+ +P PN
Sbjct: 419 TEWDDIHVVTGALKLFLRELPQPLVPPLLLPHFRAALALSESEQCLSQIQELIGSMPKPN 478
Query: 1271 RDTMKVLFRHL 1303
DT++ L HL
Sbjct: 479 HDTLRYLLEHL 489
>ref|NP_115885.2| rho GTPase-activating protein 9 isoform 1 [Homo sapiens].
Length = 731
Score = 275 bits (704), Expect = 5e-74
Identities = 156/371 (42%), Positives = 226/371 (60%), Gaps = 31/371 (8%)
Frame = +2
Query: 284 PLEQLM-----VEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNM 448
PL QL+ VEK G L KIA GG+KLRKNW SWVVL+ + FY+E A S+
Sbjct: 312 PLPQLLDDPHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSG 371
Query: 449 --KTGHKPEN-IDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIK 619
G +PE+ +DL GA + + SSR+NV I T+ G+EFLLQSD + + W A++
Sbjct: 372 WGPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALR 431
Query: 620 NAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSAS-- 793
I+RL ++ LEL ++ S EL + D +E++ E + RL S
Sbjct: 432 TVIERLDRE-----NPLEL-RLSGSGPAELSAGED---EEEESELVSKPLLRLSSRRSSI 482
Query: 794 ---DTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQ 964
+ +++NRV+++LK+ I +RP L++LQE+GL++DQ+FG L ++C+RE TVP F++
Sbjct: 483 RGPEGTEQNRVRNKLKRLIAKRPPLQSLQERGLLRDQVFGCQLESLCQREGDTVPSFLRL 542
Query: 965 CIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVN------------------QEEKLNLDD 1090
CI AV+KRGL+VDGIYRVSGNLA +QKLRF+V+ QE +L+LD
Sbjct: 543 CIAAVDKRGLDVDGIYRVSGNLAVVQKLRFLVDRERAVTSDGRYVFPEQPGQEGRLDLDS 602
Query: 1091 SQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPN 1270
++W+DIHVVTGALK+F RELP+PL P F A+ ++ + ++ L+ +P PN
Sbjct: 603 TEWDDIHVVTGALKLFLRELPQPLVPPLLLPHFRAALALSESEQCLSQIQELIGSMPKPN 662
Query: 1271 RDTMKVLFRHL 1303
DT++ L HL
Sbjct: 663 HDTLRYLLEHL 673
>ref|NP_001073626.1| rho GTPase-activating protein 9 isoform 2 [Homo sapiens].
Length = 640
Score = 253 bits (647), Expect = 2e-67
Identities = 147/337 (43%), Positives = 208/337 (61%), Gaps = 31/337 (9%)
Frame = +2
Query: 284 PLEQLM-----VEKEGYLQKAKIADGGKKLRKNWSTSWVVLSSRKIEFYKESKQQALSNM 448
PL QL+ VEK G L KIA GG+KLRKNW SWVVL+ + FY+E A S+
Sbjct: 312 PLPQLLDDPHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSG 371
Query: 449 --KTGHKPEN-IDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIK 619
G +PE+ +DL GA + + SSR+NV I T+ G+EFLLQSD + + W A++
Sbjct: 372 WGPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALR 431
Query: 620 NAIDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLHHSAS-- 793
I+RL ++ LEL ++ S EL + D +E++ E + RL S
Sbjct: 432 TVIERLDRE-----NPLEL-RLSGSGPAELSAGED---EEEESELVSKPLLRLSSRRSSI 482
Query: 794 ---DTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQ 964
+ +++NRV+++LK+ I +RP L++LQE+GL++DQ+FG L ++C+RE TVP F++
Sbjct: 483 RGPEGTEQNRVRNKLKRLIAKRPPLQSLQERGLLRDQVFGCQLESLCQREGDTVPSFLRL 542
Query: 965 CIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVN------------------QEEKLNLDD 1090
CI AV+KRGL+VDGIYRVSGNLA +QKLRF+V+ QE +L+LD
Sbjct: 543 CIAAVDKRGLDVDGIYRVSGNLAVVQKLRFLVDRERAVTSDGRYVFPEQPGQEGRLDLDS 602
Query: 1091 SQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAI 1201
++W+DIHVVTGALK+F RELP+PL P F A+
Sbjct: 603 TEWDDIHVVTGALKLFLRELPQPLVPPLLLPHFRAAL 639
>ref|NP_065875.3| rho GTPase-activating protein 21 [Homo sapiens].
Length = 1958
Score = 138 bits (347), Expect = 1e-32
Identities = 122/412 (29%), Positives = 198/412 (48%), Gaps = 26/412 (6%)
Frame = +2
Query: 149 KNANSHHDRLSQSKSMILTDVGKVTEPISRHRRNHSQHILKDVIPPLEQLMVEKEGYLQ- 325
++A +S K + + D K +E S R++ S + D KEG+L
Sbjct: 891 EDAKLSFKHVSSLKGIKIADSQKSSED-SGSRKDSSSEVFSDAA---------KEGWLHF 940
Query: 326 KAKIADGGKKLR---KNWSTSWVVLSSRKIEFYKESKQQALSNMKTGHKPENIDLCGAQI 496
+ + D GK++ + W +VVL + YK+ ++Q + + +P +++ C I
Sbjct: 941 RPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEE--EQPISVNACLIDI 998
Query: 497 EWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNAIDRLPKDPSTPSRNL-- 670
+++ K RKNVF++TT S E L Q++ +L W I+ + + +D +R+L
Sbjct: 999 SYSETK--RKNVFRLTT-SDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTNRDLIS 1055
Query: 671 --------------ELFKIQRSSST--ELLSHYDSDIKEQKPEHRKSLMFRLHHSASDTS 802
+L K R S + + L S+ K Q P K R S DTS
Sbjct: 1056 RRIKEYNNLMSKAEQLPKTPRQSLSIRQTLLGAKSEPKTQSPHSPKEESERKLLSKDDTS 1115
Query: 803 DKNRVKSRLKKFITRRPSL--KTLQEKGLIKDQIFGSHLHTVCERE-NSTVPRFVKQCIE 973
+ K +K I PS+ KT ++K FG L N +P V C +
Sbjct: 1116 PP-KDKGTWRKGI---PSIMRKTFEKKPTATGT-FGVRLDDCPPAHTNRYIPLIVDICCK 1170
Query: 974 AVEKRGLNVDGIYRVSGNLATIQKLRFIVNQE-EKLNLDDSQWEDIHVVTGALKMFFREL 1150
VE+RGL GIYRV GN A I ++ +N+ +++ D +W D++V++ LK FFR+L
Sbjct: 1171 LVEERGLEYTGIYRVPGNNAAISSMQEELNKGMADIDIQDDKWRDLNVISSLLKSFFRKL 1230
Query: 1151 PEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLK 1306
PEPLF + F+EA +K+D R++T+K L+ LP + +T+K L HLK
Sbjct: 1231 PEPLFTNDKYADFIEANRKEDPLDRLKTLKRLIHDLPEHHYETLKFLSAHLK 1282
>ref|NP_001186346.1| rho GTPase-activating protein 23 [Homo sapiens].
Length = 1491
Score = 120 bits (302), Expect = 2e-27
Identities = 100/358 (27%), Positives = 164/358 (45%), Gaps = 23/358 (6%)
Frame = +2
Query: 302 VEKEGYLQ-KAKIADGGKKLR---KNWSTSWVVLSSRKIEFYKESKQQ--------ALSN 445
+ +EG+L K + GKK + W + L +R + KE ++ A
Sbjct: 689 IRREGWLYYKQILTKKGKKAGSGLRQWKRVYAALRARSLSLSKERREPGPAAAGAAAAGA 748
Query: 446 MKTGHKPENIDLCGAQIEWAKEKSSRKNVFQITTVSGNEFLLQSDIDFIILDWFHAIKNA 625
+ P I C I +++ K R++VF++TT E+L Q++ +L W AI+
Sbjct: 749 GEDEAAPVCIGSCLVDISYSETK--RRHVFRLTTADFCEYLFQAEDRDDMLGWIRAIREN 806
Query: 626 IDRLPKDPSTPSRNLELFKIQRSSSTELLSHYDSDIKEQKPEHRKSL----MFRLHHSAS 793
+DP ++ L K+ + +SH + P+ + L L SA+
Sbjct: 807 SRAEGEDPGCANQALISKKL---NDYRKVSHSSGPKADSSPKGSRGLGGLKSEFLKQSAA 863
Query: 794 DTSDKNRVKSRLKKFITRRPS----LKTLQEKGLIKDQIFGSHLHTVCE--RENSTVPRF 955
+ + K P + +++ + FG L C+ EN VP
Sbjct: 864 RGLRTQDLPAGSKDDSAAAPKTPWGINIIKKNKKAAPRAFGVRLEE-CQPATENQRVPLI 922
Query: 956 VKQCIEAVEKRGLNVDGIYRVSGNLATIQKLRFIVNQEE-KLNLDDSQWEDIHVVTGALK 1132
V C VE RGL GIYRV GN A + L+ +N+ +NL D +W+D++V++ LK
Sbjct: 923 VAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINLQDERWQDLNVISSLLK 982
Query: 1133 MFFRELPEPLFPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLK 1306
FFR+LPEPLF + F+EA + +D R+ T++ L++ LP +T+K L HLK
Sbjct: 983 SFFRKLPEPLFTDDKYNDFIEANRIEDARERMRTLRKLIRDLPGHYYETLKFLVGHLK 1040
>ref|NP_001166101.1| rho GTPase-activating protein 33 isoform 2 [Homo sapiens].
Length = 1123
Score = 112 bits (279), Expect = 1e-24
Identities = 58/169 (34%), Positives = 97/169 (57%), Gaps = 1/169 (0%)
Frame = +2
Query: 806 KNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEK 985
+ ++ L+ F+ RPS + L+++G+++ ++FG L VP+ ++ C E +E
Sbjct: 146 RGKLAGLLRTFMRSRPSRQRLRQRGILRQRVFGCDLGEHLSNSGQDVPQVLRCCSEFIEA 205
Query: 986 RGLNVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQW-EDIHVVTGALKMFFRELPEPL 1162
G+ VDGIYR+SG + IQ+LR + E L + +DIH V+ K++FRELP PL
Sbjct: 206 HGV-VDGIYRLSGVSSNIQRLRHEFDSERIPELSGPAFLQDIHSVSSLCKLYFRELPNPL 264
Query: 1163 FPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
Y + +F EA+ R+ V ++Q+LPPP+ T++ L RHL +
Sbjct: 265 LTYQLYGKFSEAMSVPGEEERLVRVHDVIQQLPPPHYRTLEYLLRHLAR 313
>ref|NP_443180.2| rho GTPase-activating protein 33 isoform 1 [Homo sapiens].
Length = 1126
Score = 112 bits (279), Expect = 1e-24
Identities = 58/169 (34%), Positives = 97/169 (57%), Gaps = 1/169 (0%)
Frame = +2
Query: 806 KNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTVCERENSTVPRFVKQCIEAVEK 985
+ ++ L+ F+ RPS + L+++G+++ ++FG L VP+ ++ C E +E
Sbjct: 282 RGKLAGLLRTFMRSRPSRQRLRQRGILRQRVFGCDLGEHLSNSGQDVPQVLRCCSEFIEA 341
Query: 986 RGLNVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQW-EDIHVVTGALKMFFRELPEPL 1162
G+ VDGIYR+SG + IQ+LR + E L + +DIH V+ K++FRELP PL
Sbjct: 342 HGV-VDGIYRLSGVSSNIQRLRHEFDSERIPELSGPAFLQDIHSVSSLCKLYFRELPNPL 400
Query: 1163 FPYSFFERFVEAIKKQDNNTRIETVKSLVQKLPPPNRDTMKVLFRHLKK 1309
Y + +F EA+ R+ V ++Q+LPPP+ T++ L RHL +
Sbjct: 401 LTYQLYGKFSEAMSVPGEEERLVRVHDVIQQLPPPHYRTLEYLLRHLAR 449
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,556,841
Number of extensions: 1104372
Number of successful extensions: 3727
Number of sequences better than 1.0e-05: 105
Number of HSP's gapped: 3623
Number of HSP's successfully gapped: 105
Length of query: 446
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 340
Effective length of database: 14,802,980
Effective search space: 5033013200
Effective search space used: 5033013200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013378
(1340 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 359 3e-96
>Sscrofa_Chr15
|| Length = 157681621
Score = 359 bits (181), Expect = 3e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 49 aggataacactgtaatatgcagaaatcaacaaattctgatacctctgtggaaacactgaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9543896 aggataacactgtaatatgcagaaatcaacaaattctgatacctctgtggaaacactgaa 9543837
Query: 109 tcccactcgacaagccaccggagctgtgcaaatgagaatcaaaaatgccaacagccacca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9543836 tcccactcgacaagccaccggagctgtgcaaatgagaatcaaaaatgccaacagccacca 9543777
Query: 169 cgacaggctgagccaaagtaaatccatgatcctcaccgatgttgggaaggtcactgaacc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9543776 cgacaggctgagccaaagtaaatccatgatcctcaccgatgttgggaaggtcactgaacc 9543717
Query: 229 t 229
|
Sbjct: 9543716 t 9543716
Score = 272 bits (137), Expect = 5e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 1066 agaagagaagctgaatttggacgacagccagtgggaggacatccacgttgtcaccggagc 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8916458 agaagagaagctgaatttggacgacagccagtgggaggacatccacgttgtcaccggagc 8916399
Query: 1126 actgaagatgtttttccgggagctgcctgagccgctcttcccttacagcttctttgagcg 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8916398 actgaagatgtttttccgggagctgcctgagccgctcttcccttacagcttctttgagcg 8916339
Query: 1186 gtttgtggaagcgatca 1202
|||||||||||||||||
Sbjct: 8916338 gtttgtggaagcgatca 8916322
Score = 272 bits (137), Expect = 5e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 1066 agaagagaagctgaatttggacgacagccagtgggaggacatccacgttgtcaccggagc 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9159713 agaagagaagctgaatttggacgacagccagtgggaggacatccacgttgtcaccggagc 9159772
Query: 1126 actgaagatgtttttccgggagctgcctgagccgctcttcccttacagcttctttgagcg 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9159773 actgaagatgtttttccgggagctgcctgagccgctcttcccttacagcttctttgagcg 9159832
Query: 1186 gtttgtggaagcgatca 1202
|||||||||||||||||
Sbjct: 9159833 gtttgtggaagcgatca 9159849
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 637 gccaaaggatccaagtactccttcaagaaacctggaattatttaaaattcagagatcctc 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9269200 gccaaaggatccaagtactccttcaagaaacctggaattatttaaaattcagagatcctc 9269141
Query: 697 cagtactgaattactaagtcactatgacagtgatataaaagaacagaaaccagagcacag 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9269140 cagtactgaattactaagtcactatgacagtgatataaaagaacagaaaccagagcacag 9269081
Query: 757 aaagtctttaa 767
|||||||||||
Sbjct: 9269080 aaagtctttaa 9269070
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 768 tgttcagacttcatcatagtgcttctgatacaagcgacaaaaaccgagttaaaagcagat 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9094680 tgttcagacttcatcatagtgcttctgatacaagcgacaaaaaccgagttaaaagcagat 9094621
Query: 828 taaagaagtttattactcgaagaccttctctgaaaactctgcaagaaaaaggacttatta 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9094620 taaagaagtttattactcgaagaccttctctgaaaactctgcaagaaaaaggacttatta 9094561
Query: 888 aag 890
|||
Sbjct: 9094560 aag 9094558
Score = 236 bits (119), Expect = 3e-59
Identities = 122/123 (99%)
Strand = Plus / Minus
Query: 1203 aaaagcaagacaataacacaagaattgaaaccgtaaagtctcttgtacaaaaactccctc 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8880307 aaaagcaagacaataacacaagaattgaaaccgtaaagtctcttgtacaaaaactccctc 8880248
Query: 1263 caccaaatcgtgacaccatgaaagtcctctttagacacctaaaaaagtaagttataaaag 1322
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8880247 caccaaatcgtgacaccatgaaagtcctctttagacacctaacaaagtaagttataaaag 8880188
Query: 1323 ttt 1325
|||
Sbjct: 8880187 ttt 8880185
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 889 agatcaaatttttggctctcatctgcacacagtgtgtgaacgtgaaaattccacagttcc 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9063355 agatcaaatttttggctctcatctgcacacagtgtgtgaacgtgaaaattccacagttcc 9063296
Query: 949 gcggtttgtaaagcagtgcattgaagctgttgaaaaaagaggt 991
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9063295 gcggtttgtaaagcagtgcattgaagctgttgaaaaaagaggt 9063253
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 537 agatcacaacagtatcaggaaatgagtttcttcttcagtcagatattgacttcatcatat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9270475 agatcacaacagtatcaggaaatgagtttcttcttcagtcagatattgacttcatcatat 9270416
Query: 597 tggattggttccacgctatcaaaaatgcaattgacagattg 637
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 9270415 tggattggttccacgctatcaaaaatgcaattgacagattg 9270375
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 356 ctaaggaaaaactggtctacttcctgggttgttctttctagtcgaaaaattgaattttac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9476140 ctaaggaaaaactggtctacttcctgggttgttctttctagtcgaaaaattgaattttac 9476081
Query: 416 aaagaatccaaacagcaggctctgtctaacatg 448
|||||||||||||||||||||||||||||||||
Sbjct: 9476080 aaagaatccaaacagcaggctctgtctaacatg 9476048
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 448 gaaaactgggcacaaaccagaaaatatagatttgtgtggagcacaaattgaatgggccaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9456443 gaaaactgggcacaaaccagaaaatatagatttgtgtggagcacaaattgaatgggccaa 9456384
Query: 508 ggaaaaatcaagcagaaagaatgtctttcag 538
|||||||||||||||||||||||||||||||
Sbjct: 9456383 ggaaaaatcaagcagaaagaatgtctttcag 9456353
Score = 159 bits (80), Expect = 5e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 988 aggtctgaatgttgatggaatatatcgagttagtggcaatctggcaacaatacagaagtt 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9034732 aggtctgaatgttgatggaatatatcgagttagtggcaatctggcaacaatacagaagtt 9034673
Query: 1048 aagatttattgtcaaccaag 1067
||||||||||||||||||||
Sbjct: 9034672 aagatttattgtcaaccaag 9034653
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 230 atatccaggcacagaaggaatcattcacagcatatcttaaaagatgtcattcctccattg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9500850 atatccaggcacagaaggaatcattcacagcatatcttaaaagatgtcattcctccattg 9500791
Query: 290 gaacaattg 298
|||||||||
Sbjct: 9500790 gaacaattg 9500782
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 230 atatccaggcacagaaggaatcattcacagcatatcttaaaagatgtcattcctccattg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9693963 atatccaggcacagaaggaatcattcacagcatatcttaaaagatgtcattcctccattg 9694022
Query: 290 gaacaattg 298
|||||||||
Sbjct: 9694023 gaacaattg 9694031
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 298 gatggttgaaaaagaaggttatcttcaaaaagctaaaattgcagatggaggaaagaaact 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9489676 gatggttgaaaaagaaggttatcttcaaaaagctaaaattgcagatggaggaaagaaact 9489617
Query: 358 aagg 361
||||
Sbjct: 9489616 aagg 9489613
Score = 101 bits (51), Expect = 1e-18
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 1 attaacagaagttgatggcagtttcaataacaggtcagcactgagaaaagg 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9571239 attaacagaagttgatggcagtttcaataacaggtcagcactgagaaaagg 9571189
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,648,637
Number of extensions: 383
Number of successful extensions: 383
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 15
Length of query: 1340
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1319
Effective length of database: 2,808,413,156
Effective search space: 3704296952764
Effective search space used: 3704296952764
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)