Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013381
(1178 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545883.1| PREDICTED: similar to Mesoderm development cand... 236 4e-62
>ref|XP_545883.1| PREDICTED: similar to Mesoderm development candidate 2 [Canis
familiaris].
Length = 190
Score = 236 bits (601), Expect = 4e-62
Identities = 121/167 (72%), Positives = 129/167 (77%), Gaps = 3/167 (1%)
Frame = +1
Query: 232 EKDDDIEEGDLPEHKRPSAPIDFSQIDPGKPESIXXXXXXXXXXXXFVTVSGNPTEKETE 411
+KDDDIEEGDLPEHKRPSAPIDFSQIDPG+PESI FVTVSG+PTEKETE
Sbjct: 24 KKDDDIEEGDLPEHKRPSAPIDFSQIDPGRPESILKMTKKGKTLMMFVTVSGSPTEKETE 83
Query: 412 EITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRCADVTLEGQVY 591
EITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRCADVTLEGQVY
Sbjct: 84 EITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRCADVTLEGQVY 143
Query: 592 PGKGGXXXXXXXXXXXXXXXXXXXXXXXRASK---DDNRAGSQRQEL 723
PGKGG RA+K +DNRAG++R+EL
Sbjct: 144 PGKGGGSQEKNKTKQEKGKKKKEGVPKSRAAKVVQEDNRAGNKREEL 190
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,257,486
Number of extensions: 1106609
Number of successful extensions: 4214
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4183
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 287
Effective length of database: 15,374,224
Effective search space: 4412402288
Effective search space used: 4412402288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013381
(1178 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029641.1| LDLR chaperone MESD [Bos taurus]. 320 2e-87
>ref|NP_001029641.1| LDLR chaperone MESD [Bos taurus].
Length = 232
Score = 320 bits (819), Expect = 2e-87
Identities = 164/232 (70%), Positives = 169/232 (72%)
Frame = +1
Query: 28 MAASAWARTAXXXXXXXXXXXXXXXPPRAFAAEGPAKTPSEATXXXXXXXXDIRDYNDAD 207
MAAS WAR A PPRAFA EGPA+TP EAT DIRDYNDAD
Sbjct: 1 MAASGWARAAVIFLCACDLLLLLLLPPRAFATEGPAETPGEATPPPRKKKKDIRDYNDAD 60
Query: 208 MARLLEQWEKDDDIEEGDLPEHKRPSAPIDFSQIDPGKPESIXXXXXXXXXXXXFVTVSG 387
MARLLEQWEKDDDIEEGDLPEHKRPSAPIDFSQIDPGKPESI FVTVSG
Sbjct: 61 MARLLEQWEKDDDIEEGDLPEHKRPSAPIDFSQIDPGKPESILKMTKKGKTLMMFVTVSG 120
Query: 388 NPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRCAD 567
NPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDG YAWEIKDFLVSQDRCAD
Sbjct: 121 NPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGGYAWEIKDFLVSQDRCAD 180
Query: 568 VTLEGQVYPGKGGXXXXXXXXXXXXXXXXXXXXXXXRASKDDNRAGSQRQEL 723
VTLEGQVYPGKGG RASK+DNRAGS+++EL
Sbjct: 181 VTLEGQVYPGKGGGSKEKNQTKQEKGKKKKERDLKPRASKEDNRAGSKKEEL 232
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,394,816
Number of extensions: 1069631
Number of successful extensions: 4207
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4175
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 288
Effective length of database: 14,240,222
Effective search space: 4101183936
Effective search space used: 4101183936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013381
(1178 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928898.1| PREDICTED: LDLR chaperone MESD [Sus scrofa]. 335 4e-92
>ref|XP_001928898.1| PREDICTED: LDLR chaperone MESD [Sus scrofa].
Length = 232
Score = 335 bits (858), Expect = 4e-92
Identities = 174/232 (75%), Positives = 174/232 (75%)
Frame = +1
Query: 28 MAASAWARTAXXXXXXXXXXXXXXXPPRAFAAEGPAKTPSEATXXXXXXXXDIRDYNDAD 207
MAASAWARTA PPRAFAAEGPAKTPSEAT DIRDYNDAD
Sbjct: 1 MAASAWARTAVVLLCVSDLLLLVLLPPRAFAAEGPAKTPSEATPPPRKKKKDIRDYNDAD 60
Query: 208 MARLLEQWEKDDDIEEGDLPEHKRPSAPIDFSQIDPGKPESIXXXXXXXXXXXXFVTVSG 387
MARLLEQWEKDDDIEEGDLPEHKRPSAPIDFSQIDPGKPESI FVTVSG
Sbjct: 61 MARLLEQWEKDDDIEEGDLPEHKRPSAPIDFSQIDPGKPESILKMTKKGKTLMMFVTVSG 120
Query: 388 NPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRCAD 567
NPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRCAD
Sbjct: 121 NPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRCAD 180
Query: 568 VTLEGQVYPGKGGXXXXXXXXXXXXXXXXXXXXXXXRASKDDNRAGSQRQEL 723
VTLEGQVYPGKGG RASKDDNRAGSQRQEL
Sbjct: 181 VTLEGQVYPGKGGGSKEKNKTKQEKGKKKKEGDSKSRASKDDNRAGSQRQEL 232
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,680,991
Number of extensions: 688036
Number of successful extensions: 2669
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2651
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,829,335
Effective search space: 2569336485
Effective search space used: 2569336485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013381
(1178 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075892.3| LDLR chaperone MESD [Mus musculus]. 284 8e-77
>ref|NP_075892.3| LDLR chaperone MESD [Mus musculus].
Length = 224
Score = 284 bits (727), Expect = 8e-77
Identities = 154/232 (66%), Positives = 164/232 (70%)
Frame = +1
Query: 28 MAASAWARTAXXXXXXXXXXXXXXXPPRAFAAEGPAKTPSEATXXXXXXXXDIRDYNDAD 207
MAAS W R PP A+AA+ TP EAT DIRDYNDAD
Sbjct: 1 MAASRWLRAVLLFLCASDLLLLP--PPNAYAAD----TPGEATPPPRKKK-DIRDYNDAD 53
Query: 208 MARLLEQWEKDDDIEEGDLPEHKRPSAPIDFSQIDPGKPESIXXXXXXXXXXXXFVTVSG 387
MARLLEQWEKDDDIEEGDLPEHKRPSAPIDFS++DPGKPESI FVTVSG
Sbjct: 54 MARLLEQWEKDDDIEEGDLPEHKRPSAPIDFSKLDPGKPESILKMTKKGKTLMMFVTVSG 113
Query: 388 NPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRCAD 567
NPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRCA+
Sbjct: 114 NPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRCAE 173
Query: 568 VTLEGQVYPGKGGXXXXXXXXXXXXXXXXXXXXXXXRASKDDNRAGSQRQEL 723
VTLEGQ+YPGKGG RASK+DNRAGS+R++L
Sbjct: 174 VTLEGQMYPGKGG-GSKEKNKTKPEKAKKKEGDPKPRASKEDNRAGSRREDL 224
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,926,298
Number of extensions: 910921
Number of successful extensions: 3728
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3687
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 289
Effective length of database: 12,523,851
Effective search space: 3619392939
Effective search space used: 3619392939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013381
(1178 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055969.1| LDLR chaperone MESD [Homo sapiens]. 291 8e-79
>ref|NP_055969.1| LDLR chaperone MESD [Homo sapiens].
Length = 234
Score = 291 bits (745), Expect = 8e-79
Identities = 152/234 (64%), Positives = 164/234 (70%), Gaps = 2/234 (0%)
Frame = +1
Query: 28 MAASAWARTAXXXXXXXXXXXXXXX--PPRAFAAEGPAKTPSEATXXXXXXXXDIRDYND 201
MAAS WAR A PP + AAEG TP E+T DIRDYND
Sbjct: 1 MAASRWARKAVVLLCASDLLLLLLLLPPPGSCAAEGSPGTPDESTPPPRKKKKDIRDYND 60
Query: 202 ADMARLLEQWEKDDDIEEGDLPEHKRPSAPIDFSQIDPGKPESIXXXXXXXXXXXXFVTV 381
ADMARLLEQWEKDDDIEEGDLPEHKRPSAP+DFS+IDP KPESI FVTV
Sbjct: 61 ADMARLLEQWEKDDDIEEGDLPEHKRPSAPVDFSKIDPSKPESILKMTKKGKTLMMFVTV 120
Query: 382 SGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRC 561
SG+PTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLV QDRC
Sbjct: 121 SGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVGQDRC 180
Query: 562 ADVTLEGQVYPGKGGXXXXXXXXXXXXXXXXXXXXXXXRASKDDNRAGSQRQEL 723
ADVTLEGQVYPGKGG R+SK++NRAG++R++L
Sbjct: 181 ADVTLEGQVYPGKGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKREDL 234
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,421,944
Number of extensions: 1087162
Number of successful extensions: 4148
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4109
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 287
Effective length of database: 14,835,944
Effective search space: 4257915928
Effective search space used: 4257915928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013381
(1178 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1001 0.0
Sscrofa_Chr16 765 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1001 bits (505), Expect = 0.0
Identities = 514/517 (99%)
Strand = Plus / Plus
Query: 662 gagactccaaatctcgggcttcgaaggacgacaaccgagctgggagtcaaagacaagagc 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55390951 gagactccaaatctcgggcttcgaaggacgacaaccgagctgggagtcaaagacaagagc 55391010
Query: 722 tgtagcggggccgctgccacgggctctgcacaggagcgggcacagggacagggcggccgt 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55391011 tgtagcggggccgctgccacgggctctgcacaggagcgggcacagggacagggcggccgt 55391070
Query: 782 ggggcaccacacactgatggacttgtagtttctgctggaaaagctctgccacatgaccag 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55391071 ggggcaccacacactgatggacttgtagtttctgctggaaaagctctgccacatgaccag 55391130
Query: 842 ttggtggtccgtatgagaattcctgtctaaaagtcttcgagaaagaaaacattggctttg 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55391131 ttggtggtccgtatgagaattcctgtctaaaagtcttcgagaaagaaaacattggctttg 55391190
Query: 902 taattaacatgggacactgacaaatgcacgtttactctcagatcacttagatggaaaccg 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55391191 taattaacatgggacactgacaaatgcacgtttactctcagatcacttagatggaaaccg 55391250
Query: 962 gcggtgttgctttttccttaaatataggggagttgctggctgggtggtgccatcaccccg 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55391251 gcggtgttgctttttccttaaatataggggagttgctggctgggtggtgccatcaccccg 55391310
Query: 1022 ctggccatacctgctctgatccggccccctgctgtgtctgtgctgtttacttctgttagc 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55391311 ctggccatacctgctctgatccggccccctgctgtgtctgtgctgtttacttctgttagc 55391370
Query: 1082 tgaaaagacaccaggttcttaaccagacaaactgaagactcttgacgtgattgcatcaac 1141
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 55391371 tgaaaggacaccaggttcttaaccagacaaactgaagactcttgacgtgattgcatcagc 55391430
Query: 1142 tctgtgctgcagatatcaccttccttactgtgaaatg 1178
||||||||||||||||||||||| |||||||||||||
Sbjct: 55391431 tctgtgctgcagatatcaccttcattactgtgaaatg 55391467
Score = 470 bits (237), Expect = e-130
Identities = 237/237 (100%)
Strand = Plus / Plus
Query: 233 agaaagatgacgacatagaagaaggagacctcccagagcacaagaggccctccgcgccta 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55388540 agaaagatgacgacatagaagaaggagacctcccagagcacaagaggccctccgcgccta 55388599
Query: 293 tcgacttctcacagatagacccgggcaagcccgagagcatactgaaaatgacgaagaaag 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55388600 tcgacttctcacagatagacccgggcaagcccgagagcatactgaaaatgacgaagaaag 55388659
Query: 353 gcaagacgcttatgatgtttgtcactgtatccggaaaccccactgagaaggagacggagg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55388660 gcaagacgcttatgatgtttgtcactgtatccggaaaccccactgagaaggagacggagg 55388719
Query: 413 aaatcacaagcctctggcagggcagtcttttcaacgccaactatgacgtccaaaggt 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55388720 aaatcacaagcctctggcagggcagtcttttcaacgccaactatgacgtccaaaggt 55388776
Score = 464 bits (234), Expect = e-128
Identities = 234/234 (100%)
Strand = Plus / Plus
Query: 1 ctcgctacccggcgctgcgcggcgaagatggcggcctccgcctgggcgcgcaccgccgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55381605 ctcgctacccggcgctgcgcggcgaagatggcggcctccgcctgggcgcgcaccgccgtg 55381664
Query: 61 gtccttctctgtgtctctgatctgctgcttctcgtgctgctgccgccaagggcgttcgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55381665 gtccttctctgtgtctctgatctgctgcttctcgtgctgctgccgccaagggcgttcgcc 55381724
Query: 121 gctgagggcccagccaaaacgcccagcgaggctactccacctccccggaagaagaagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55381725 gctgagggcccagccaaaacgcccagcgaggctactccacctccccggaagaagaagaag 55381784
Query: 181 gatattcgcgactacaatgatgcggacatggctcgtcttctggaacagtgggag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55381785 gatattcgcgactacaatgatgcggacatggctcgtcttctggaacagtgggag 55381838
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 465 aaggttcatcgtgggatcagaccgggccatcttcatgctgcgtgacgggagctacgcctg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55390754 aaggttcatcgtgggatcagaccgggccatcttcatgctgcgtgacgggagctacgcctg 55390813
Query: 525 ggagatcaaggactttttggtcagtcaagacaggtgtgccgatgtcacgctggagggaca 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55390814 ggagatcaaggactttttggtcagtcaagacaggtgtgccgatgtcacgctggagggaca 55390873
Query: 585 ggtataccccg 595
|||||||||||
Sbjct: 55390874 ggtataccccg 55390884
>Sscrofa_Chr16
|| Length = 86898991
Score = 765 bits (386), Expect = 0.0
Identities = 486/517 (94%), Gaps = 3/517 (0%)
Strand = Plus / Plus
Query: 662 gagactccaaatctcgggcttcgaaggacgacaaccgagctgggagtcaaagacaagagc 721
||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct: 80282132 gagactccaaatctcaggcgtcgaaggacggcaactgagctgggagtcaaagacaagagc 80282191
Query: 722 tgtagcggggccgctgccacgggctctgcacaggagcgggcacagggacagggcggccgt 781
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 80282192 tgtagcggggccgctgcctcgggctctgcacaggagcgggcacagggacagggcggccac 80282251
Query: 782 ggggcaccacacactgatggacttgtagtttctgctggaaaagctctgccacatgaccag 841
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 80282252 ggggcaccacacactgatggacttgtagtttctgctggaaaagctctgccacgtgaccag 80282311
Query: 842 ttggtggtccgtatgagaattcctgtctaaaagtcttcgagaaagaaaacattggctttg 901
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 80282312 ttggtggtccgtatgagaattcctgtctaaaaggcttcgagaaagaaaacattggctttg 80282371
Query: 902 taattaacatgggacactgacaaatgcacgtttactctcagatcacttagatggaaaccg 961
|||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 80282372 taattaacatggcacaccggcaaatgcacgtttactctcagatcacttagatggaaaccg 80282431
Query: 962 gcggtgttgctttttccttaaatataggggagttgctggctgggtggtgccatcaccccg 1021
| | ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 80282432 gagatgttgctttttccttaaatgtaggggagacgctggctgggtggtgccatcaccccg 80282491
Query: 1022 ctggccatacctgctctgatccggccccctgctgtgtctgtgctgtttacttctgttagc 1081
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 80282492 ctggccatacctgctctgatccggccccctgctgtgtctgtgctgtttact--tgttagc 80282549
Query: 1082 tgaaaagacaccaggttcttaaccagacaaactgaagactcttgacgtgattgcatcaac 1141
||||| |||||||||||||| | ||||||||| ||||||||| ||| ||||||||||| |
Sbjct: 80282550 tgaaaggacaccaggttctt-atcagacaaacagaagactctagacatgattgcatcagc 80282608
Query: 1142 tctgtgctgcagatatcaccttccttactgtgaaatg 1178
|| ||||||||||||| ||| || |||||| ||||||
Sbjct: 80282609 tccgtgctgcagatattaccctcattactgcgaaatg 80282645
Score = 392 bits (198), Expect = e-106
Identities = 273/295 (92%), Gaps = 6/295 (2%)
Strand = Plus / Plus
Query: 299 tctcacagatagacccgggcaagcccgagagcatactgaaaatgacgaagaaaggcaaga 358
||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct: 80281775 tctcacagacagacccgggcaagcccgagggcaaactgaaaatgac----aaaggcaaga 80281830
Query: 359 cgcttatgatgtttgtcactgtatccggaaaccccactgagaaggagacggaggaaatca 418
|||| |||||||||||||| ||||||||||||||| ||||||||||||||| ||| | ||
Sbjct: 80281831 cgctgatgatgtttgtcac-gtatccggaaaccccgctgagaaggagacggcggacacca 80281889
Query: 419 caagcctctggcagggcagtcttttcaacgccaactatgacgtccaaaggttcatcgtgg 478
|||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||
Sbjct: 80281890 caagcctctggcagggcagtcttttcaatgccaactacgac-tccgaaggttcatcgtgg 80281948
Query: 479 gatcagaccgggccatcttcatgctgcgtgacgggagctacgcctgggagatcaaggact 538
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80281949 gatcggaccgggccatcttcatgctgcgtgacgggagctacacctgggagatcaaggacg 80282008
Query: 539 ttttggtcagtcaagacaggtgtgccgatgtcacgctggagggacaggtataccc 593
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 80282009 ttttggtcagtcgagacaggtgtgccgatgtcacactggagggacaggtataccc 80282063
Score = 137 bits (69), Expect = 2e-29
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 24 gaagatggcggcctccgcctgggcgcgcaccgccgtggtccttctctgtgtctctgatct 83
||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 80281686 gaagacggcggcctccggctgggcgcgcgccgccgtggtccttctctgtgtctctgatct 80281745
Query: 84 gctgcttctcgtgctgctgcc 104
|||||||||||||||||||||
Sbjct: 80281746 gctgcttctcgtgctgctgcc 80281766
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,871,896
Number of extensions: 200
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 7
Length of query: 1178
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1157
Effective length of database: 2,808,413,156
Effective search space: 3249334021492
Effective search space used: 3249334021492
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)