Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013382
(1146 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541275.2| PREDICTED: similar to riboflavin kinase [Canis ... 344 8e-95
>ref|XP_541275.2| PREDICTED: similar to riboflavin kinase [Canis familiaris].
Length = 589
Score = 344 bits (883), Expect = 8e-95
Identities = 165/179 (92%), Positives = 172/179 (96%)
Frame = +2
Query: 254 GTAALAAPPDARTGPQPAPQTNGVMRNLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVD 433
GTA+ AA PD RTG QPAPQ +GVMR+LPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVD
Sbjct: 411 GTASTAASPDPRTGSQPAPQAHGVMRHLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVD 470
Query: 434 NLPADVSTGIYYGWASVGSGDVHKMVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILN 613
NLPADVSTGIYYGWASVGSGDVHKMVVSIGWNPYYKNTKKSMETHI+HTFKEDFYGEILN
Sbjct: 471 NLPADVSTGIYYGWASVGSGDVHKMVVSIGWNPYYKNTKKSMETHIIHTFKEDFYGEILN 530
Query: 614 VAIVGYLRPEKNFDSLESLISAIQGDIEEAKKQLDLPEHLKLKEDNFFQVSKSKIMNGH 790
VAIVGYLRPEKNFDSLESLISAIQGDIEEAKK+LDLPEHLK KEDNFFQV K+KI+NGH
Sbjct: 531 VAIVGYLRPEKNFDSLESLISAIQGDIEEAKKRLDLPEHLKFKEDNFFQVPKNKILNGH 589
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,092,240
Number of extensions: 939268
Number of successful extensions: 3525
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3520
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 277
Effective length of database: 15,374,224
Effective search space: 4258660048
Effective search space used: 4258660048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013382
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013382
(1146 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_592590.5| PREDICTED: riboflavin kinase [Bos taurus]. 347 e-102
Alignment gi|XP_002689713.1| PREDICTED: riboflavin kinase [Bos taurus]. 347 e-102
>ref|XP_592590.5| PREDICTED: riboflavin kinase [Bos taurus].
Length = 339
Score = 347 bits (889), Expect(3) = e-102
Identities = 164/181 (90%), Positives = 173/181 (95%)
Frame = +2
Query: 248 GSGTAALAAPPDARTGPQPAPQTNGVMRNLPYFCRGQVVRGFGRGSKQLGIPTANFPEQV 427
G GTA+ AAPPD+R+GPQP P+ +GVMR LPYFCRGQVVRGFGRGSKQLGIPTANFPEQV
Sbjct: 159 GQGTASTAAPPDSRSGPQPEPEADGVMRQLPYFCRGQVVRGFGRGSKQLGIPTANFPEQV 218
Query: 428 VDNLPADVSTGIYYGWASVGSGDVHKMVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEI 607
VDNLPAD+STGIYYGWASVG+GDVHKMVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEI
Sbjct: 219 VDNLPADISTGIYYGWASVGNGDVHKMVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEI 278
Query: 608 LNVAIVGYLRPEKNFDSLESLISAIQGDIEEAKKQLDLPEHLKLKEDNFFQVSKSKIMNG 787
L VAIVGYLRPEKNFDSLE+LISAIQGDIEEAKK+LDLPEHLKLKED FFQV KSKIMNG
Sbjct: 279 LKVAIVGYLRPEKNFDSLEALISAIQGDIEEAKKRLDLPEHLKLKEDKFFQVPKSKIMNG 338
Query: 788 H 790
H
Sbjct: 339 H 339
Score = 34.7 bits (78), Expect(3) = e-102
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 19 RSVGWAPSHAGPPR--ELPAHTRT*LPRSPAASKSRDTASELPGTFYWVSG 165
R WA P R P +P+SPA S+S D ASE GTF WVSG
Sbjct: 71 RGTRWAGVPPAPARLCRAPRPHPYLVPQSPA-SRSPDAASESSGTFCWVSG 120
Score = 31.2 bits (69), Expect(3) = e-102
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 189 SSAPPGQPVKFPSLSPGWS 245
S+ PPG P + P +SPGWS
Sbjct: 139 SARPPGGPAELPHVSPGWS 157
>ref|XP_002689713.1| PREDICTED: riboflavin kinase [Bos taurus].
Length = 288
Score = 347 bits (889), Expect(3) = e-102
Identities = 164/181 (90%), Positives = 173/181 (95%)
Frame = +2
Query: 248 GSGTAALAAPPDARTGPQPAPQTNGVMRNLPYFCRGQVVRGFGRGSKQLGIPTANFPEQV 427
G GTA+ AAPPD+R+GPQP P+ +GVMR LPYFCRGQVVRGFGRGSKQLGIPTANFPEQV
Sbjct: 108 GQGTASTAAPPDSRSGPQPEPEADGVMRQLPYFCRGQVVRGFGRGSKQLGIPTANFPEQV 167
Query: 428 VDNLPADVSTGIYYGWASVGSGDVHKMVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEI 607
VDNLPAD+STGIYYGWASVG+GDVHKMVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEI
Sbjct: 168 VDNLPADISTGIYYGWASVGNGDVHKMVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEI 227
Query: 608 LNVAIVGYLRPEKNFDSLESLISAIQGDIEEAKKQLDLPEHLKLKEDNFFQVSKSKIMNG 787
L VAIVGYLRPEKNFDSLE+LISAIQGDIEEAKK+LDLPEHLKLKED FFQV KSKIMNG
Sbjct: 228 LKVAIVGYLRPEKNFDSLEALISAIQGDIEEAKKRLDLPEHLKLKEDKFFQVPKSKIMNG 287
Query: 788 H 790
H
Sbjct: 288 H 288
Score = 34.7 bits (78), Expect(3) = e-102
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 19 RSVGWAPSHAGPPR--ELPAHTRT*LPRSPAASKSRDTASELPGTFYWVSG 165
R WA P R P +P+SPA S+S D ASE GTF WVSG
Sbjct: 20 RGTRWAGVPPAPARLCRAPRPHPYLVPQSPA-SRSPDAASESSGTFCWVSG 69
Score = 31.2 bits (69), Expect(3) = e-102
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 189 SSAPPGQPVKFPSLSPGWS 245
S+ PPG P + P +SPGWS
Sbjct: 88 SARPPGGPAELPHVSPGWS 106
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,316,371
Number of extensions: 907472
Number of successful extensions: 3475
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3464
Number of HSP's successfully gapped: 8
Length of query: 382
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 278
Effective length of database: 14,240,222
Effective search space: 3958781716
Effective search space used: 3958781716
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013382
(1146 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122015.2| PREDICTED: riboflavin kinase-like [Sus scrof... 321 4e-88
>ref|XP_003122015.2| PREDICTED: riboflavin kinase-like [Sus scrofa].
Length = 155
Score = 321 bits (823), Expect = 4e-88
Identities = 155/155 (100%), Positives = 155/155 (100%)
Frame = +2
Query: 326 MRNLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGDVHK 505
MRNLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGDVHK
Sbjct: 1 MRNLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGDVHK 60
Query: 506 MVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQ 685
MVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQ
Sbjct: 61 MVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQ 120
Query: 686 GDIEEAKKQLDLPEHLKLKEDNFFQVSKSKIMNGH 790
GDIEEAKKQLDLPEHLKLKEDNFFQVSKSKIMNGH
Sbjct: 121 GDIEEAKKQLDLPEHLKLKEDNFFQVSKSKIMNGH 155
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,001,875
Number of extensions: 578840
Number of successful extensions: 2320
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2314
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 281
Effective length of database: 8,829,335
Effective search space: 2481043135
Effective search space used: 2481043135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013382
(1146 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062310.1| riboflavin kinase [Mus musculus]. 311 5e-85
>ref|NP_062310.1| riboflavin kinase [Mus musculus].
Length = 155
Score = 311 bits (798), Expect = 5e-85
Identities = 149/155 (96%), Positives = 153/155 (98%)
Frame = +2
Query: 326 MRNLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGDVHK 505
MR+LP+FCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGDVHK
Sbjct: 1 MRSLPFFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGDVHK 60
Query: 506 MVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQ 685
MVVSIGWNPYYKN KKSMETHI+HTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQ
Sbjct: 61 MVVSIGWNPYYKNVKKSMETHIIHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQ 120
Query: 686 GDIEEAKKQLDLPEHLKLKEDNFFQVSKSKIMNGH 790
GDIEEAKKQLDLPEHLKLK+DNFFQVSK KIMNGH
Sbjct: 121 GDIEEAKKQLDLPEHLKLKDDNFFQVSKGKIMNGH 155
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,571,980
Number of extensions: 777500
Number of successful extensions: 2633
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2629
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 279
Effective length of database: 12,523,851
Effective search space: 3494154429
Effective search space used: 3494154429
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013382
(1146 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060809.3| riboflavin kinase [Homo sapiens]. 315 5e-86
>ref|NP_060809.3| riboflavin kinase [Homo sapiens].
Length = 155
Score = 315 bits (807), Expect = 5e-86
Identities = 150/155 (96%), Positives = 155/155 (100%)
Frame = +2
Query: 326 MRNLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGDVHK 505
MR+LPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPAD+STGIYYGWASVGSGDVHK
Sbjct: 1 MRHLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHK 60
Query: 506 MVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQ 685
MVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQ
Sbjct: 61 MVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQ 120
Query: 686 GDIEEAKKQLDLPEHLKLKEDNFFQVSKSKIMNGH 790
GDIEEAKK+L+LPEHLK+KEDNFFQVSKSKIMNGH
Sbjct: 121 GDIEEAKKRLELPEHLKIKEDNFFQVSKSKIMNGH 155
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,321,765
Number of extensions: 922517
Number of successful extensions: 3269
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3262
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 278
Effective length of database: 14,868,908
Effective search space: 4133556424
Effective search space used: 4133556424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013382
(1146 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 932 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 932 bits (470), Expect = 0.0
Identities = 479/482 (99%)
Strand = Plus / Minus
Query: 661 agagtcccttatttcagcaattcaaggtgatattgaggaagctaagaaacaactagattt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256086916 agagtcccttatttcagcaattcaaggtgatattgaggaagctaagaaacaactagattt 256086857
Query: 721 accagaacatttgaaactcaaagaagacaatttcttccaggtttctaaaagcaaaataat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256086856 accagaacatttgaaactcaaagaagacaatttcttccaggtttctaaaagcaaaataat 256086797
Query: 781 gaatggccactgatggaaaattatcttatttattcattcactgttttctaatattttact 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256086796 gaatggccactgatggaaaattatcttatttattcattcactgttttctaatattttact 256086737
Query: 841 gctcataagtctgcagtctcatcttggtgatattttaaaaatcaaacattttcctacagc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256086736 gctcataagtctgcagtctcatcttggtgatattttaaaaatcaaacattttcctacagc 256086677
Query: 901 tgtgaattaaacagtacagtgtagttaccatattatgtttcaactgttcaattaaatcca 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256086676 tgtgaattaaacagtacagtgtagttaccatattatgtttcaactgttcaattaaatcca 256086617
Query: 961 tcatgttacactactaaaaatgttcattttaaaaatcaagattcttttttatgaaatgtg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256086616 tcatgttacactactaaaaatgttcattttaaaaatcaagattcttttttatgaaatgtg 256086557
Query: 1021 ttgattaaaatgtaccactaaaagggtcttaagtgtcttataatggaaatggaacgtgta 1080
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 256086556 ttgattaaaatgtaccactagaagggtcttaagtgtcttataatggaaatgaaacgtgta 256086497
Query: 1081 taaatgtgtgtaagaaagcaagtcactcgttttgagatgagaactgcaattctcatggta 1140
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256086496 taaatgtgtgtaagaaggcaagtcactcgttttgagatgagaactgcaattctcatggta 256086437
Query: 1141 aa 1142
||
Sbjct: 256086436 aa 256086435
Score = 807 bits (407), Expect = 0.0
Identities = 407/407 (100%)
Strand = Plus / Minus
Query: 1 gtgtgcgcaggcccgcggcgctcggtgggctgggcgccctcccacgccggcccgccccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256092195 gtgtgcgcaggcccgcggcgctcggtgggctgggcgccctcccacgccggcccgccccgt 256092136
Query: 61 gagctccccgcccacacccgcacttaacttccgcggtcgccggcggcgtccaagagccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256092135 gagctccccgcccacacccgcacttaacttccgcggtcgccggcggcgtccaagagccga 256092076
Query: 121 gacacagcctctgagttaccgggtaccttctattgggtcagcggcgtgagaatactgccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256092075 gacacagcctctgagttaccgggtaccttctattgggtcagcggcgtgagaatactgccc 256092016
Query: 181 acggcgtgtcgtccgcgccgcccggccagccggtcaagttcccgtccttgtcccccggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256092015 acggcgtgtcgtccgcgccgcccggccagccggtcaagttcccgtccttgtcccccggct 256091956
Query: 241 ggtccggggttccggcaccgccgcgttggcggccccgccggacgcgcggacggggccgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256091955 ggtccggggttccggcaccgccgcgttggcggccccgccggacgcgcggacggggccgca 256091896
Query: 301 gcccgcaccccaaacgaacggcgtcatgaggaacctgccgtacttctgccgtggccaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256091895 gcccgcaccccaaacgaacggcgtcatgaggaacctgccgtacttctgccgtggccaagt 256091836
Query: 361 ggtgcggggctttggccgcggctccaagcagttgggtatccctacag 407
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256091835 ggtgcggggctttggccgcggctccaagcagttgggtatccctacag 256091789
Score = 307 bits (155), Expect = 7e-81
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 406 agctaactttcctgaacaagtagtagataatcttccagccgatgtatccactggcattta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256090858 agctaactttcctgaacaagtagtagataatcttccagccgatgtatccactggcattta 256090799
Query: 466 ttatggttgggccagtgttggaagtggagatgtccataagatggtggtgagcataggatg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256090798 ttatggttgggccagtgttggaagtggagatgtccataagatggtggtgagcataggatg 256090739
Query: 526 gaacccatactacaagaatacaaaaaagtccatgg 560
|||||||||||||||||||||||||||||||||||
Sbjct: 256090738 gaacccatactacaagaatacaaaaaagtccatgg 256090704
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 559 ggaaactcatatcatgcataccttcaaagaggacttctatggggaaatcctcaatgtggc 618
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Sbjct: 256088076 ggaaactcatatcatgcataccttcaaagaggacttctatggggaaatcctcaatgtggc 256088017
Query: 619 catcgttggctacctcagaccagaaaagaactttgattctttag 662
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Sbjct: 256088016 catcgttggctacctcagaccagaaaagaactttgattctttag 256087973
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,490,844
Number of extensions: 429
Number of successful extensions: 429
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 4
Length of query: 1146
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1125
Effective length of database: 2,808,413,156
Effective search space: 3159464800500
Effective search space used: 3159464800500
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)