Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013389
(1220 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001108590.1| selenoprotein P precursor [Canis lupus famil... 448 e-126
>ref|NP_001108590.1| selenoprotein P precursor [Canis lupus familiaris].
Length = 393
Score = 448 bits (1153), Expect = e-126
Identities = 240/377 (63%), Positives = 258/377 (68%), Gaps = 3/377 (0%)
Frame = +2
Query: 71 MWRGLGLALALCFLSWGGTESQGKSSFCEQPPGWSIKDQDPMLNSYGSVTVVALLQAS*Y 250
MWR LGLALALC L WGG ESQG+SSFC+QPP WSI+DQ+PMLNS GSVTVVALLQAS Y
Sbjct: 1 MWRSLGLALALCLLPWGGAESQGQSSFCKQPPAWSIRDQNPMLNSSGSVTVVALLQASUY 60
Query: 251 LCILQASRLEDLRVKLEKEGYSNISYIVVNHQGIASQLKYVYLKSKVSEHIPVYQQEENQ 430
LCILQASRLEDLRVKLEKEG+ NISY+VVNHQG++SQLKY+YLK+KVSEHIPVYQQEENQ
Sbjct: 61 LCILQASRLEDLRVKLEKEGFLNISYVVVNHQGLSSQLKYMYLKNKVSEHIPVYQQEENQ 120
Query: 431 TDVWTLLNGNKDDFLIYDRCGLLVYHLGLPYSFLTFPYVEEAIKTVYCENKCGNCSLKTL 610
TDVWTLLNG KDDFLIYDRCG LVYHLGLPYSFLTFPYVEEAIK YCE KCGNCSL L
Sbjct: 121 TDVWTLLNGKKDDFLIYDRCGRLVYHLGLPYSFLTFPYVEEAIKRAYCEEKCGNCSLTVL 180
Query: 611 KDEDFCKNVYLATEEKTTEAPQP---XXXXXXXXXXXXXXXXXXXXXXXXXXSEHXXXXX 781
+DE+ CK V T E TTEAPQP SE+
Sbjct: 181 EDEEVCKMVSSGTVESTTEAPQPHPHDHHLHHHHHHHHKHWHRLMPHGNDELSENQQPEE 240
Query: 782 XXXXXXXXXXXXXXXXXXXXXXXXXXSEN*DMPAGSEXXXXXXXXXXXXXXGCISQLLCK 961
+N DMPAGSE GC +QLLCK
Sbjct: 241 PDVSEHPAPQGLHRHHKHKDHQRQGHPDNUDMPAGSESLQLSVPQNQLURKGCRNQLLCK 300
Query: 962 FPKNSESALRS*C*HCRHLIFEKTESAVT*QCGENLPSLCS*QGLLAEENVIES*Q*RLP 1141
P++S A S C H RHLIFEKT SA+T QC E LPSLCS QGL AEENVIES Q R P
Sbjct: 301 LPRDSGLAPSSUCUHURHLIFEKTGSAITUQCKETLPSLCSUQGLWAEENVIESUQURWP 360
Query: 1142 PAA*QASQQLNPAEAST 1192
PAA QASQQL P EAST
Sbjct: 361 PAAUQASQQLRPTEAST 377
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,226,077
Number of extensions: 1028737
Number of successful extensions: 3059
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3058
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 301
Effective length of database: 15,374,224
Effective search space: 4627641424
Effective search space used: 4627641424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013389
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013389
(1220 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776884.2| selenoprotein P precursor [Bos taurus]. 367 e-101
>ref|NP_776884.2| selenoprotein P precursor [Bos taurus].
Length = 402
Score = 367 bits (942), Expect = e-101
Identities = 176/202 (87%), Positives = 190/202 (94%)
Frame = +2
Query: 71 MWRGLGLALALCFLSWGGTESQGKSSFCEQPPGWSIKDQDPMLNSYGSVTVVALLQAS*Y 250
MWRGLGLALALC L GGTESQG+SS+C+QPP WSIKDQDPMLNSYGSVTVVALLQAS Y
Sbjct: 1 MWRGLGLALALCLLLTGGTESQGQSSYCKQPPPWSIKDQDPMLNSYGSVTVVALLQASUY 60
Query: 251 LCILQASRLEDLRVKLEKEGYSNISYIVVNHQGIASQLKYVYLKSKVSEHIPVYQQEENQ 430
LCILQASRLEDLRVKLEKEGYSNISY+VVNHQGI+S+LKYV+LK+KVSEHIPVYQQEENQ
Sbjct: 61 LCILQASRLEDLRVKLEKEGYSNISYVVVNHQGISSRLKYVHLKNKVSEHIPVYQQEENQ 120
Query: 431 TDVWTLLNGNKDDFLIYDRCGLLVYHLGLPYSFLTFPYVEEAIKTVYCENKCGNCSLKTL 610
DVWTLLNGNKDDFLIYDRCG LVYHLGLPYSFLTF YVE++IKTVYCE+KCGNCSLK L
Sbjct: 121 PDVWTLLNGNKDDFLIYDRCGRLVYHLGLPYSFLTFTYVEDSIKTVYCEDKCGNCSLKAL 180
Query: 611 KDEDFCKNVYLATEEKTTEAPQ 676
+DED CKNV+LAT+EKT EA Q
Sbjct: 181 EDEDVCKNVFLATKEKTAEASQ 202
Score = 130 bits (326), Expect = 3e-30
Identities = 73/112 (65%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Frame = +2
Query: 860 SEN*DMPAGSEXXXXXXXXXXXXXXGCISQLLCKFPKNSESALRS*C*HCRHLIFEKTES 1039
S+N D P GSE CI+QLL +FPK+SESAL S C HCRHL+FEKT S
Sbjct: 275 SDNCDTPVGSESLQPSLPQKKLURKRCINQLLUQFPKDSESALSSCCCHCRHLVFEKTGS 334
Query: 1040 AVT*QCGENLPSLCS*QGLLAEENVIES*Q*RLPPAA*QAS-QQLNPAEAST 1192
A+T QC E LPSLCS QGLLAEENVIES Q RLPPAA QA+ QQLNP EAST
Sbjct: 335 AITUQCTEKLPSLCSUQGLLAEENVIESUQURLPPAAUQAAGQQLNPTEAST 386
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,865,554
Number of extensions: 1049169
Number of successful extensions: 3011
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3010
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 301
Effective length of database: 14,207,134
Effective search space: 4276347334
Effective search space used: 4276347334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013389
(1220 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001128295.1| selenoprotein P precursor [Sus scrofa]. 562 e-160
>ref|NP_001128295.1| selenoprotein P precursor [Sus scrofa].
Length = 390
Score = 562 bits (1448), Expect = e-160
Identities = 293/374 (78%), Positives = 293/374 (78%)
Frame = +2
Query: 71 MWRGLGLALALCFLSWGGTESQGKSSFCEQPPGWSIKDQDPMLNSYGSVTVVALLQAS*Y 250
MWRGLGLALALC LSWGGTESQGKSSFCEQPPGWSIKDQDPMLNSYGSVTVVALLQAS Y
Sbjct: 1 MWRGLGLALALCLLSWGGTESQGKSSFCEQPPGWSIKDQDPMLNSYGSVTVVALLQASUY 60
Query: 251 LCILQASRLEDLRVKLEKEGYSNISYIVVNHQGIASQLKYVYLKSKVSEHIPVYQQEENQ 430
LCILQASRLEDLRVKLEKEGYSNISYIVVNHQGIASQLKYVYLKSKVSEHIPVYQQEENQ
Sbjct: 61 LCILQASRLEDLRVKLEKEGYSNISYIVVNHQGIASQLKYVYLKSKVSEHIPVYQQEENQ 120
Query: 431 TDVWTLLNGNKDDFLIYDRCGLLVYHLGLPYSFLTFPYVEEAIKTVYCENKCGNCSLKTL 610
TDVWTLLNGNKDDFLIYDRCGLLVYHLGLPYSFLTFPYVEEAIKTVYCENKCGNCSLKTL
Sbjct: 121 TDVWTLLNGNKDDFLIYDRCGLLVYHLGLPYSFLTFPYVEEAIKTVYCENKCGNCSLKTL 180
Query: 611 KDEDFCKNVYLATEEKTTEAPQPXXXXXXXXXXXXXXXXXXXXXXXXXXSEHXXXXXXXX 790
KDEDFCKNVYLATEEKTTEAPQP SEH
Sbjct: 181 KDEDFCKNVYLATEEKTTEAPQPHHHHDHHHHRHHHHHHGHQHLGNGHLSEHPKPEAPDA 240
Query: 791 XXXXXXXXXXXXXXXXXXXXXXXSEN*DMPAGSEXXXXXXXXXXXXXXGCISQLLCKFPK 970
SEN DMPAGSE GCISQLLCKFPK
Sbjct: 241 PEQPPPSGLHHHHGHKGHQRQGHSENUDMPAGSESLQLSLPQKKLURRGCISQLLCKFPK 300
Query: 971 NSESALRS*C*HCRHLIFEKTESAVT*QCGENLPSLCS*QGLLAEENVIES*Q*RLPPAA 1150
NSESALRS C HCRHLIFEKTESAVT QCGENLPSLCS QGLLAEENVIES Q RLPPAA
Sbjct: 301 NSESALRSUCUHCRHLIFEKTESAVTUQCGENLPSLCSUQGLLAEENVIESUQURLPPAA 360
Query: 1151 *QASQQLNPAEAST 1192
QASQQLNPAEAST
Sbjct: 361 UQASQQLNPAEAST 374
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,603,472
Number of extensions: 726413
Number of successful extensions: 1923
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1923
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 305
Effective length of database: 8,829,335
Effective search space: 2692947175
Effective search space used: 2692947175
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013389
(1220 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001036079.1| selenoprotein P precursor [Mus musculus]. 309 2e-84
Alignment gi|NP_001036078.1| selenoprotein P precursor [Mus musculus]. 309 2e-84
Alignment gi|NP_033181.3| selenoprotein P precursor [Mus musculus]. 309 2e-84
>ref|NP_001036079.1| selenoprotein P precursor [Mus musculus].
Length = 380
Score = 309 bits (792), Expect = 2e-84
Identities = 150/199 (75%), Positives = 166/199 (83%)
Frame = +2
Query: 71 MWRGLGLALALCFLSWGGTESQGKSSFCEQPPGWSIKDQDPMLNSYGSVTVVALLQAS*Y 250
MWR LGLALALC L +GG ESQG+SS C + P W I DQ+PMLNS G VTVVALLQAS Y
Sbjct: 1 MWRSLGLALALCLLPYGGAESQGQSSACYKAPEWYIGDQNPMLNSEGKVTVVALLQASUY 60
Query: 251 LCILQASRLEDLRVKLEKEGYSNISYIVVNHQGIASQLKYVYLKSKVSEHIPVYQQEENQ 430
LC+LQASRLEDLR+KLE +GY NISYIVVNHQG SQLK+ +LK +VSEHI VY+QEE+
Sbjct: 61 LCLLQASRLEDLRIKLESQGYFNISYIVVNHQGSPSQLKHSHLKKQVSEHIAVYRQEEDG 120
Query: 431 TDVWTLLNGNKDDFLIYDRCGLLVYHLGLPYSFLTFPYVEEAIKTVYCENKCGNCSLKTL 610
DVWTLLNGNKDDFLIYDRCG LVYHLGLPYSFLTFPYVEEAIK YCE +CGNC+L +L
Sbjct: 121 IDVWTLLNGNKDDFLIYDRCGRLVYHLGLPYSFLTFPYVEEAIKIAYCEERCGNCNLTSL 180
Query: 611 KDEDFCKNVYLATEEKTTE 667
+DEDFCK V AT KT E
Sbjct: 181 EDEDFCKTVTSATANKTAE 199
Score = 104 bits (260), Expect = 1e-22
Identities = 56/85 (65%), Positives = 63/85 (74%)
Frame = +2
Query: 935 GCISQLLCKFPKNSESALRS*C*HCRHLIFEKTESAVT*QCGENLPSLCS*QGLLAEENV 1114
GCI+QLLCK K SE+A S C HCRHLIFEK+ SA+ QC ENLPSLCS QGL AEE V
Sbjct: 280 GCINQLLCKLSKESEAAPSSCCCHCRHLIFEKSGSAIAUQCAENLPSLCSUQGLFAEEKV 339
Query: 1115 IES*Q*RLPPAA*QASQQLNPAEAS 1189
ES Q R PPAA Q +Q +NP EA+
Sbjct: 340 TESCQCRSPPAAUQ-NQPMNPMEAN 363
>ref|NP_001036078.1| selenoprotein P precursor [Mus musculus].
Length = 380
Score = 309 bits (792), Expect = 2e-84
Identities = 150/199 (75%), Positives = 166/199 (83%)
Frame = +2
Query: 71 MWRGLGLALALCFLSWGGTESQGKSSFCEQPPGWSIKDQDPMLNSYGSVTVVALLQAS*Y 250
MWR LGLALALC L +GG ESQG+SS C + P W I DQ+PMLNS G VTVVALLQAS Y
Sbjct: 1 MWRSLGLALALCLLPYGGAESQGQSSACYKAPEWYIGDQNPMLNSEGKVTVVALLQASUY 60
Query: 251 LCILQASRLEDLRVKLEKEGYSNISYIVVNHQGIASQLKYVYLKSKVSEHIPVYQQEENQ 430
LC+LQASRLEDLR+KLE +GY NISYIVVNHQG SQLK+ +LK +VSEHI VY+QEE+
Sbjct: 61 LCLLQASRLEDLRIKLESQGYFNISYIVVNHQGSPSQLKHSHLKKQVSEHIAVYRQEEDG 120
Query: 431 TDVWTLLNGNKDDFLIYDRCGLLVYHLGLPYSFLTFPYVEEAIKTVYCENKCGNCSLKTL 610
DVWTLLNGNKDDFLIYDRCG LVYHLGLPYSFLTFPYVEEAIK YCE +CGNC+L +L
Sbjct: 121 IDVWTLLNGNKDDFLIYDRCGRLVYHLGLPYSFLTFPYVEEAIKIAYCEERCGNCNLTSL 180
Query: 611 KDEDFCKNVYLATEEKTTE 667
+DEDFCK V AT KT E
Sbjct: 181 EDEDFCKTVTSATANKTAE 199
Score = 104 bits (260), Expect = 1e-22
Identities = 56/85 (65%), Positives = 63/85 (74%)
Frame = +2
Query: 935 GCISQLLCKFPKNSESALRS*C*HCRHLIFEKTESAVT*QCGENLPSLCS*QGLLAEENV 1114
GCI+QLLCK K SE+A S C HCRHLIFEK+ SA+ QC ENLPSLCS QGL AEE V
Sbjct: 280 GCINQLLCKLSKESEAAPSSCCCHCRHLIFEKSGSAIAUQCAENLPSLCSUQGLFAEEKV 339
Query: 1115 IES*Q*RLPPAA*QASQQLNPAEAS 1189
ES Q R PPAA Q +Q +NP EA+
Sbjct: 340 TESCQCRSPPAAUQ-NQPMNPMEAN 363
>ref|NP_033181.3| selenoprotein P precursor [Mus musculus].
Length = 380
Score = 309 bits (792), Expect = 2e-84
Identities = 150/199 (75%), Positives = 166/199 (83%)
Frame = +2
Query: 71 MWRGLGLALALCFLSWGGTESQGKSSFCEQPPGWSIKDQDPMLNSYGSVTVVALLQAS*Y 250
MWR LGLALALC L +GG ESQG+SS C + P W I DQ+PMLNS G VTVVALLQAS Y
Sbjct: 1 MWRSLGLALALCLLPYGGAESQGQSSACYKAPEWYIGDQNPMLNSEGKVTVVALLQASUY 60
Query: 251 LCILQASRLEDLRVKLEKEGYSNISYIVVNHQGIASQLKYVYLKSKVSEHIPVYQQEENQ 430
LC+LQASRLEDLR+KLE +GY NISYIVVNHQG SQLK+ +LK +VSEHI VY+QEE+
Sbjct: 61 LCLLQASRLEDLRIKLESQGYFNISYIVVNHQGSPSQLKHSHLKKQVSEHIAVYRQEEDG 120
Query: 431 TDVWTLLNGNKDDFLIYDRCGLLVYHLGLPYSFLTFPYVEEAIKTVYCENKCGNCSLKTL 610
DVWTLLNGNKDDFLIYDRCG LVYHLGLPYSFLTFPYVEEAIK YCE +CGNC+L +L
Sbjct: 121 IDVWTLLNGNKDDFLIYDRCGRLVYHLGLPYSFLTFPYVEEAIKIAYCEERCGNCNLTSL 180
Query: 611 KDEDFCKNVYLATEEKTTE 667
+DEDFCK V AT KT E
Sbjct: 181 EDEDFCKTVTSATANKTAE 199
Score = 104 bits (260), Expect = 1e-22
Identities = 56/85 (65%), Positives = 63/85 (74%)
Frame = +2
Query: 935 GCISQLLCKFPKNSESALRS*C*HCRHLIFEKTESAVT*QCGENLPSLCS*QGLLAEENV 1114
GCI+QLLCK K SE+A S C HCRHLIFEK+ SA+ QC ENLPSLCS QGL AEE V
Sbjct: 280 GCINQLLCKLSKESEAAPSSCCCHCRHLIFEKSGSAIAUQCAENLPSLCSUQGLFAEEKV 339
Query: 1115 IES*Q*RLPPAA*QASQQLNPAEAS 1189
ES Q R PPAA Q +Q +NP EA+
Sbjct: 340 TESCQCRSPPAAUQ-NQPMNPMEAN 363
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,583,075
Number of extensions: 874700
Number of successful extensions: 2560
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2560
Number of HSP's successfully gapped: 6
Length of query: 406
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 302
Effective length of database: 12,493,815
Effective search space: 3773132130
Effective search space used: 3773132130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013389
(1220 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001087195.1| selenoprotein P isoform 2 [Homo sapiens]. 453 e-127
Alignment gi|NP_001078955.1| selenoprotein P isoform 1 precursor [Homo sa... 445 e-125
Alignment gi|NP_005401.3| selenoprotein P isoform 1 precursor [Homo sapie... 445 e-125
>ref|NP_001087195.1| selenoprotein P isoform 2 [Homo sapiens].
Length = 411
Score = 453 bits (1165), Expect = e-127
Identities = 244/377 (64%), Positives = 262/377 (69%)
Frame = +2
Query: 59 TTPAMWRGLGLALALCFLSWGGTESQGKSSFCEQPPGWSIKDQDPMLNSYGSVTVVALLQ 238
TTPAMWR LGLALALC L GGTESQ +SS C+QPP WSI+DQDPMLNS GSVTVVALLQ
Sbjct: 27 TTPAMWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQ 86
Query: 239 AS*YLCILQASRLEDLRVKLEKEGYSNISYIVVNHQGIASQLKYVYLKSKVSEHIPVYQQ 418
AS YLCILQAS+LEDLRVKL+KEGYSNISYIVVNHQGI+S+LKY +LK+KVSEHIPVYQQ
Sbjct: 87 ASUYLCILQASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQ 146
Query: 419 EENQTDVWTLLNGNKDDFLIYDRCGLLVYHLGLPYSFLTFPYVEEAIKTVYCENKCGNCS 598
EENQTDVWTLLNG+KDDFLIYDRCG LVYHLGLP+SFLTFPYVEEAIK YCE KCGNCS
Sbjct: 147 EENQTDVWTLLNGSKDDFLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCS 206
Query: 599 LKTLKDEDFCKNVYLATEEKTTEAPQPXXXXXXXXXXXXXXXXXXXXXXXXXXSEHXXXX 778
L TLKDEDFCK V LAT +KT E P P SE+
Sbjct: 207 LTTLKDEDFCKRVSLATVDKTVETPSP------HYHHEHHHNHGHQHLGSSELSENQQPG 260
Query: 779 XXXXXXXXXXXXXXXXXXXXXXXXXXXSEN*DMPAGSEXXXXXXXXXXXXXXGCISQLLC 958
EN DMPA + CI+QLLC
Sbjct: 261 APNAPTHPAPPGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKR---CINQLLC 317
Query: 959 KFPKNSESALRS*C*HCRHLIFEKTESAVT*QCGENLPSLCS*QGLLAEENVIES*Q*RL 1138
K P +SE A RS C HCRHLIFEKT SA+T QC ENLPSLCS QGL AEEN+ ES Q RL
Sbjct: 318 KLPTDSELAPRSUCCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENITESCQURL 377
Query: 1139 PPAA*QASQQLNPAEAS 1189
PPAA Q SQQL P EAS
Sbjct: 378 PPAAUQISQQLIPTEAS 394
>ref|NP_001078955.1| selenoprotein P isoform 1 precursor [Homo sapiens].
Length = 381
Score = 445 bits (1144), Expect = e-125
Identities = 240/373 (64%), Positives = 258/373 (69%)
Frame = +2
Query: 71 MWRGLGLALALCFLSWGGTESQGKSSFCEQPPGWSIKDQDPMLNSYGSVTVVALLQAS*Y 250
MWR LGLALALC L GGTESQ +SS C+QPP WSI+DQDPMLNS GSVTVVALLQAS Y
Sbjct: 1 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUY 60
Query: 251 LCILQASRLEDLRVKLEKEGYSNISYIVVNHQGIASQLKYVYLKSKVSEHIPVYQQEENQ 430
LCILQAS+LEDLRVKL+KEGYSNISYIVVNHQGI+S+LKY +LK+KVSEHIPVYQQEENQ
Sbjct: 61 LCILQASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQ 120
Query: 431 TDVWTLLNGNKDDFLIYDRCGLLVYHLGLPYSFLTFPYVEEAIKTVYCENKCGNCSLKTL 610
TDVWTLLNG+KDDFLIYDRCG LVYHLGLP+SFLTFPYVEEAIK YCE KCGNCSL TL
Sbjct: 121 TDVWTLLNGSKDDFLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL 180
Query: 611 KDEDFCKNVYLATEEKTTEAPQPXXXXXXXXXXXXXXXXXXXXXXXXXXSEHXXXXXXXX 790
KDEDFCK V LAT +KT E P P SE+
Sbjct: 181 KDEDFCKRVSLATVDKTVETPSP------HYHHEHHHNHGHQHLGSSELSENQQPGAPNA 234
Query: 791 XXXXXXXXXXXXXXXXXXXXXXXSEN*DMPAGSEXXXXXXXXXXXXXXGCISQLLCKFPK 970
EN DMPA + CI+QLLCK P
Sbjct: 235 PTHPAPPGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKR---CINQLLCKLPT 291
Query: 971 NSESALRS*C*HCRHLIFEKTESAVT*QCGENLPSLCS*QGLLAEENVIES*Q*RLPPAA 1150
+SE A RS C HCRHLIFEKT SA+T QC ENLPSLCS QGL AEEN+ ES Q RLPPAA
Sbjct: 292 DSELAPRSUCCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENITESCQURLPPAA 351
Query: 1151 *QASQQLNPAEAS 1189
Q SQQL P EAS
Sbjct: 352 UQISQQLIPTEAS 364
>ref|NP_005401.3| selenoprotein P isoform 1 precursor [Homo sapiens].
Length = 381
Score = 445 bits (1144), Expect = e-125
Identities = 240/373 (64%), Positives = 258/373 (69%)
Frame = +2
Query: 71 MWRGLGLALALCFLSWGGTESQGKSSFCEQPPGWSIKDQDPMLNSYGSVTVVALLQAS*Y 250
MWR LGLALALC L GGTESQ +SS C+QPP WSI+DQDPMLNS GSVTVVALLQAS Y
Sbjct: 1 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUY 60
Query: 251 LCILQASRLEDLRVKLEKEGYSNISYIVVNHQGIASQLKYVYLKSKVSEHIPVYQQEENQ 430
LCILQAS+LEDLRVKL+KEGYSNISYIVVNHQGI+S+LKY +LK+KVSEHIPVYQQEENQ
Sbjct: 61 LCILQASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQ 120
Query: 431 TDVWTLLNGNKDDFLIYDRCGLLVYHLGLPYSFLTFPYVEEAIKTVYCENKCGNCSLKTL 610
TDVWTLLNG+KDDFLIYDRCG LVYHLGLP+SFLTFPYVEEAIK YCE KCGNCSL TL
Sbjct: 121 TDVWTLLNGSKDDFLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL 180
Query: 611 KDEDFCKNVYLATEEKTTEAPQPXXXXXXXXXXXXXXXXXXXXXXXXXXSEHXXXXXXXX 790
KDEDFCK V LAT +KT E P P SE+
Sbjct: 181 KDEDFCKRVSLATVDKTVETPSP------HYHHEHHHNHGHQHLGSSELSENQQPGAPNA 234
Query: 791 XXXXXXXXXXXXXXXXXXXXXXXSEN*DMPAGSEXXXXXXXXXXXXXXGCISQLLCKFPK 970
EN DMPA + CI+QLLCK P
Sbjct: 235 PTHPAPPGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKR---CINQLLCKLPT 291
Query: 971 NSESALRS*C*HCRHLIFEKTESAVT*QCGENLPSLCS*QGLLAEENVIES*Q*RLPPAA 1150
+SE A RS C HCRHLIFEKT SA+T QC ENLPSLCS QGL AEEN+ ES Q RLPPAA
Sbjct: 292 DSELAPRSUCCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENITESCQURLPPAA 351
Query: 1151 *QASQQLNPAEAS 1189
Q SQQL P EAS
Sbjct: 352 UQISQQLIPTEAS 364
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,631,775
Number of extensions: 1025665
Number of successful extensions: 3028
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3028
Number of HSP's successfully gapped: 6
Length of query: 406
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 301
Effective length of database: 14,835,944
Effective search space: 4465619144
Effective search space used: 4465619144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013389
(1220 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 922 0.0
>Sscrofa_Chr16
|| Length = 86898991
Score = 922 bits (465), Expect = 0.0
Identities = 468/469 (99%)
Strand = Plus / Minus
Query: 731 caccagcatcttgggaacggtcatctttcagagcatccgaaaccagaagcgccagacgct 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 29023301 caccagcatcttgggaacggtcatctttcagagcatccgaaaccagaagcgccagacact 29023242
Query: 791 cctgagcagccccctccttcaggtcttcatcaccatcatgggcacaagggtcaccaaaga 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29023241 cctgagcagccccctccttcaggtcttcatcaccatcatgggcacaagggtcaccaaaga 29023182
Query: 851 cagggtcactctgagaactgagatatgccagcaggaagtgaaagtttacaactttctctt 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29023181 cagggtcactctgagaactgagatatgccagcaggaagtgaaagtttacaactttctctt 29023122
Query: 911 ccacagaaaaagctctgacgaaggggatgcataagtcagttactctgcaaatttcccaaa 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29023121 ccacagaaaaagctctgacgaaggggatgcataagtcagttactctgcaaatttcccaaa 29023062
Query: 971 aattcagagtcagctctgagaagttgatgctgacactgtcgacatctgatatttgaaaaa 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29023061 aattcagagtcagctctgagaagttgatgctgacactgtcgacatctgatatttgaaaaa 29023002
Query: 1031 acagagtctgcagtcacctgacagtgtggagaaaacctcccttctttatgtagctgacag 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29023001 acagagtctgcagtcacctgacagtgtggagaaaacctcccttctttatgtagctgacag 29022942
Query: 1091 ggccttctggcagaggagaacgtcattgaatcttgacagtgacgtttgcctccagctgcc 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29022941 ggccttctggcagaggagaacgtcattgaatcttgacagtgacgtttgcctccagctgcc 29022882
Query: 1151 tgacaggcaagtcagcagctcaaccccgcagaagctagcaccaaatgaa 1199
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29022881 tgacaggcaagtcagcagctcaaccccgcagaagctagcaccaaatgaa 29022833
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 272 agattggaagacctgcgagtaaaactggagaaagaaggatattctaacatctcctacatt 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29028000 agattggaagacctgcgagtaaaactggagaaagaaggatattctaacatctcctacatt 29027941
Query: 332 gttgttaatcatcaaggaattgcttctcaattaaaatatgtgtatcttaaaagtaaggtt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29027940 gttgttaatcatcaaggaattgcttctcaattaaaatatgtgtatcttaaaagtaaggtt 29027881
Query: 392 tcagagcatattcctgtttatcaacaagaagaaaaccaaacagatgtctggactctctta 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29027880 tcagagcatattcctgtttatcaacaagaagaaaaccaaacagatgtctggactctctta 29027821
Query: 452 aatggaaataaagatgacttcctcatatatgacag 486
|||||||||||||||||||||||||||||||||||
Sbjct: 29027820 aatggaaataaagatgacttcctcatatatgacag 29027786
Score = 420 bits (212), Expect = e-115
Identities = 215/216 (99%)
Strand = Plus / Minus
Query: 58 gacgaccccagcaatgtggagaggcctggggctggccctggctctctgtttcctctcttg 117
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 29028967 gacgaccccagcaatgtggagaggcctggggctggccctggctctctgtctcctctcttg 29028908
Query: 118 gggaggaacagagagccaggggaaaagctccttctgtgagcaacctccaggctggagcat 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29028907 gggaggaacagagagccaggggaaaagctccttctgtgagcaacctccaggctggagcat 29028848
Query: 178 aaaggaccaagaccccatgctgaactcctatggttcagtgactgtggttgctcttcttca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29028847 aaaggaccaagaccccatgctgaactcctatggttcagtgactgtggttgctcttcttca 29028788
Query: 238 ggccagctgatacctgtgtattctgcaggcatccag 273
||||||||||||||||||||||||||||||||||||
Sbjct: 29028787 ggccagctgatacctgtgtattctgcaggcatccag 29028752
Score = 238 bits (120), Expect = 6e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 485 agatgcggcctccttgtatatcatcttggtttgccttattccttcttaactttcccatat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29026466 agatgcggcctccttgtatatcatcttggtttgccttattccttcttaactttcccatat 29026407
Query: 545 gtagaagaagccattaagactgtttactgtgaaaataaatgtggaaactgctctctcaag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29026406 gtagaagaagccattaagactgtttactgtgaaaataaatgtggaaactgctctctcaag 29026347
Score = 145 bits (73), Expect = 7e-32
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 603 agaccctgaaagatgaagacttttgtaaaaatgtatatttggctactgaggaaaaaacaa 662
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 29023429 agaccctgaaagatgaagacttttgtaaaaacgtatatttggctactgaggaaaaaacaa 29023370
Query: 663 ctgaggctccacagcct 679
|||||||||||||||||
Sbjct: 29023369 ctgaggctccacagcct 29023353
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 2 gtggagctgccgagctgagcaaagagaaaggaagcaagctagtcggaaggggtcgtg 58
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29031931 gtggagctgccgagctgagcaaagagaaaggaagcaagctagtcggaaggggtcgtg 29031875
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,124,935
Number of extensions: 339
Number of successful extensions: 339
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 6
Length of query: 1220
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1199
Effective length of database: 2,808,413,156
Effective search space: 3367287374044
Effective search space used: 3367287374044
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)