Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013390
(1146 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039536.1| ADP-ribosylation factor-like protein 8B [Bos... 365 e-101
Alignment gi|XP_002690878.1| PREDICTED: mCG3164-like [Bos taurus]. 125 9e-29
Alignment gi|XP_002700648.1| PREDICTED: mCG3164-like [Bos taurus]. 125 9e-29
Alignment gi|NP_777114.1| ADP-ribosylation factor 2 [Bos taurus]. 122 8e-28
Alignment gi|NP_788826.1| ADP-ribosylation factor 1 [Bos taurus]. 121 1e-27
Alignment gi|NP_001015571.1| ADP-ribosylation factor 3 [Bos taurus]. 118 1e-26
Alignment gi|XP_002686040.1| PREDICTED: ADP-ribosylation factor 1-like [B... 117 2e-26
Alignment gi|XP_001253266.1| PREDICTED: ADP-ribosylation factor 1 isoform... 117 2e-26
Alignment gi|NP_001039694.1| ADP-ribosylation factor-like protein 1 [Bos ... 117 2e-26
Alignment gi|NP_001077140.1| ADP-ribosylation factor 5 [Bos taurus]. 115 9e-26
>ref|NP_001039536.1| ADP-ribosylation factor-like protein 8B [Bos taurus].
Length = 186
Score = 365 bits (938), Expect = e-101
Identities = 179/180 (99%), Positives = 180/180 (100%)
Frame = +1
Query: 178 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 357
MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 358 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL 537
TKGNVTIKIWDIGGQPRF+SMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
Sbjct: 61 TKGNVTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL 120
Query: 538 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 717
QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
Sbjct: 121 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 180
>ref|XP_002690878.1| PREDICTED: mCG3164-like [Bos taurus].
Length = 175
Score = 125 bits (313), Expect = 9e-29
Identities = 58/163 (35%), Positives = 97/163 (59%)
Frame = +1
Query: 220 LFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGG 399
+F +EM + ++GL +GKTT + + GQ S IPTVGFN+ VT NV +WD+GG
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGG 66
Query: 400 QPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 579
Q + R +W Y G +++++D ADR++I+ +R ELH +++ +++ +L+ NK+DL
Sbjct: 67 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
Query: 580 PNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
P+A+ ++ EK+ L+ I+DR D + L WL
Sbjct: 127 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169
>ref|XP_002700648.1| PREDICTED: mCG3164-like [Bos taurus].
Length = 175
Score = 125 bits (313), Expect = 9e-29
Identities = 58/163 (35%), Positives = 97/163 (59%)
Frame = +1
Query: 220 LFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGG 399
+F +EM + ++GL +GKTT + + GQ S IPTVGFN+ VT NV +WD+GG
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGG 66
Query: 400 QPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 579
Q + R +W Y G +++++D ADR++I+ +R ELH +++ +++ +L+ NK+DL
Sbjct: 67 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
Query: 580 PNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
P+A+ ++ EK+ L+ I+DR D + L WL
Sbjct: 127 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169
>ref|NP_777114.1| ADP-ribosylation factor 2 [Bos taurus].
Length = 181
Score = 122 bits (305), Expect = 8e-28
Identities = 56/166 (33%), Positives = 99/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+SLF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_788826.1| ADP-ribosylation factor 1 [Bos taurus].
Length = 181
Score = 121 bits (303), Expect = 1e-27
Identities = 55/166 (33%), Positives = 98/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_001015571.1| ADP-ribosylation factor 3 [Bos taurus].
Length = 181
Score = 118 bits (295), Expect = 1e-26
Identities = 54/165 (32%), Positives = 97/165 (58%)
Frame = +1
Query: 214 RSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDI 393
+SL K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD+
Sbjct: 10 KSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDV 68
Query: 394 GGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKR 573
GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK+
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 574 DLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 129 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|XP_002686040.1| PREDICTED: ADP-ribosylation factor 1-like [Bos taurus].
Length = 181
Score = 117 bits (293), Expect = 2e-26
Identities = 53/166 (31%), Positives = 97/166 (58%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +W
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWH 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +L+ NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLLFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|XP_001253266.1| PREDICTED: ADP-ribosylation factor 1 isoform 1 [Bos taurus].
Length = 181
Score = 117 bits (293), Expect = 2e-26
Identities = 53/166 (31%), Positives = 97/166 (58%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +W
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWH 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +L+ NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLLFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_001039694.1| ADP-ribosylation factor-like protein 1 [Bos taurus].
Length = 181
Score = 117 bits (292), Expect = 2e-26
Identities = 54/168 (32%), Positives = 100/168 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F SLF EM + ++GL +GKTT + + G+ IPT+GFN+ VT N+ ++WD
Sbjct: 9 FSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ R W Y +A++Y++D+ DR++I S++EL +L++ +L+ ++V NK
Sbjct: 68 LGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 714
+D+ A+ ++ + L A++DR+ + S + +D ++WL++
Sbjct: 128 QDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 175
>ref|NP_001077140.1| ADP-ribosylation factor 5 [Bos taurus].
Length = 180
Score = 115 bits (287), Expect = 9e-26
Identities = 52/166 (31%), Positives = 95/166 (57%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F +F K++M + +VGL +GKTT + + G+ IPT+GFN+ V N+ +WD
Sbjct: 9 FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE+++ S +EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+D+PNA+ +L +K+ L ++ R + + + L WL
Sbjct: 128 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 173
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,206,847
Number of extensions: 868888
Number of successful extensions: 3259
Number of sequences better than 1.0e-05: 95
Number of HSP's gapped: 3189
Number of HSP's successfully gapped: 95
Length of query: 382
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 278
Effective length of database: 14,240,222
Effective search space: 3958781716
Effective search space used: 3958781716
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013390
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013390
(1146 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853013.1| PREDICTED: similar to ADP-ribosylation factor-l... 367 e-101
Alignment gi|XP_537123.2| PREDICTED: similar to ADP-ribosylation factor-l... 169 5e-42
Alignment gi|XP_547801.1| PREDICTED: similar to ADP-ribosylation factor 6... 125 1e-28
Alignment gi|XP_537606.1| PREDICTED: similar to ADP-ribosylation factor 2... 122 8e-28
Alignment gi|XP_850048.1| PREDICTED: similar to ADP-ribosylation factor 2... 122 8e-28
Alignment gi|XP_543688.2| PREDICTED: similar to ADP-ribosylation factor 3... 118 1e-26
Alignment gi|XP_852990.1| PREDICTED: similar to ADP-ribosylation factor-l... 117 3e-26
Alignment gi|XP_854343.1| PREDICTED: similar to ADP-ribosylation factor 1... 117 3e-26
Alignment gi|XP_860566.1| PREDICTED: similar to ADP-ribosylation factor 2... 115 8e-26
Alignment gi|XP_532438.2| PREDICTED: similar to ADP-ribosylation factor 5... 115 1e-25
>ref|XP_853013.1| PREDICTED: similar to ADP-ribosylation factor-like 10C [Canis
familiaris].
Length = 186
Score = 367 bits (942), Expect = e-101
Identities = 180/180 (100%), Positives = 180/180 (100%)
Frame = +1
Query: 178 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 357
MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 358 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL 537
TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL 120
Query: 538 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 717
QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
Sbjct: 121 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 180
>ref|XP_537123.2| PREDICTED: similar to ADP-ribosylation factor-like 10B [Canis
familiaris].
Length = 124
Score = 169 bits (428), Expect = 5e-42
Identities = 84/110 (76%), Positives = 92/110 (83%)
Frame = +1
Query: 301 SGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADR 480
SGQF+EDMIPTVGFNMRK+TKGNVTIK+WDIGGQPRFRSMWERYCRGV+AIVYM+DAAD+
Sbjct: 3 SGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQ 62
Query: 481 EKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSA 630
EKIEAS+NELHNLLDKPQLQGIP L G + AL EK SA
Sbjct: 63 EKIEASKNELHNLLDKPQLQGIPHLESGARHAPLQALSSCVCREKEPRSA 112
>ref|XP_547801.1| PREDICTED: similar to ADP-ribosylation factor 6 [Canis familiaris].
Length = 175
Score = 125 bits (313), Expect = 1e-28
Identities = 58/163 (35%), Positives = 97/163 (59%)
Frame = +1
Query: 220 LFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGG 399
+F +EM + ++GL +GKTT + + GQ S IPTVGFN+ VT NV +WD+GG
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGG 66
Query: 400 QPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 579
Q + R +W Y G +++++D ADR++I+ +R ELH +++ +++ +L+ NK+DL
Sbjct: 67 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
Query: 580 PNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
P+A+ ++ EK+ L+ I+DR D + L WL
Sbjct: 127 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169
>ref|XP_537606.1| PREDICTED: similar to ADP-ribosylation factor 2 isoform 1 [Canis
familiaris].
Length = 181
Score = 122 bits (305), Expect = 8e-28
Identities = 56/166 (33%), Positives = 99/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+SLF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWL 173
>ref|XP_850048.1| PREDICTED: similar to ADP-ribosylation factor 2 isoform 2 [Canis
familiaris].
Length = 181
Score = 122 bits (305), Expect = 8e-28
Identities = 56/166 (33%), Positives = 99/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+SLF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWL 173
>ref|XP_543688.2| PREDICTED: similar to ADP-ribosylation factor 3 isoform 1 [Canis
familiaris].
Length = 181
Score = 118 bits (295), Expect = 1e-26
Identities = 54/165 (32%), Positives = 97/165 (58%)
Frame = +1
Query: 214 RSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDI 393
+SL K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD+
Sbjct: 10 KSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDV 68
Query: 394 GGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKR 573
GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK+
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 574 DLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 129 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|XP_852990.1| PREDICTED: similar to ADP-ribosylation factor-like 1 isoform 1
[Canis familiaris].
Length = 181
Score = 117 bits (292), Expect = 3e-26
Identities = 54/168 (32%), Positives = 100/168 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F SLF EM + ++GL +GKTT + + G+ IPT+GFN+ VT N+ ++WD
Sbjct: 9 FSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ R W Y +A++Y++D+ DR++I S++EL +L++ +L+ ++V NK
Sbjct: 68 LGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 714
+D+ A+ ++ + L A++DR+ + S + +D ++WL++
Sbjct: 128 QDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 175
>ref|XP_854343.1| PREDICTED: similar to ADP-ribosylation factor 1 [Canis familiaris].
Length = 215
Score = 117 bits (292), Expect = 3e-26
Identities = 53/165 (32%), Positives = 94/165 (56%)
Frame = +1
Query: 214 RSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDI 393
+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N + +WD+
Sbjct: 44 KGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEHKNTSFAVWDV 102
Query: 394 GGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKR 573
GGQ + R +W Y + +++++D+ DRE + +R EL +L + +L+ +LV NK+
Sbjct: 103 GGQDKIRPLWRHYFQNTRGLIFVVDSNDREHVNEAREELMRMLAEDELRDAVLLVFANKQ 162
Query: 574 DLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
DL N ++ ++ +K+ L ++ R C + +D + L WL
Sbjct: 163 DLRNTMNAAEITDKLGLHSLHHRNWCIQATCATSRDGLYEGLAWL 207
>ref|XP_860566.1| PREDICTED: similar to ADP-ribosylation factor 2 isoform 3 [Canis
familiaris].
Length = 187
Score = 115 bits (288), Expect = 8e-26
Identities = 56/172 (32%), Positives = 99/172 (57%), Gaps = 6/172 (3%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG------FNMRKVTKGNV 372
F+SLF K+EM + +VGL +GKTT + + G+ IPT+G FN+ V N+
Sbjct: 9 FKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGQQCLAGFNVETVEYKNI 67
Query: 373 TIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPV 552
+ +WD+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +
Sbjct: 68 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVL 127
Query: 553 LVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
LV NK+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 LVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWL 179
>ref|XP_532438.2| PREDICTED: similar to ADP-ribosylation factor 5 isoform 1 [Canis
familiaris].
Length = 180
Score = 115 bits (287), Expect = 1e-25
Identities = 52/166 (31%), Positives = 95/166 (57%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F +F K++M + +VGL +GKTT + + G+ IPT+GFN+ V N+ +WD
Sbjct: 9 FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE+++ S +EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+D+PNA+ +L +K+ L ++ R + + + L WL
Sbjct: 128 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 173
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,902,359
Number of extensions: 901085
Number of successful extensions: 3323
Number of sequences better than 1.0e-05: 91
Number of HSP's gapped: 3255
Number of HSP's successfully gapped: 92
Length of query: 382
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 277
Effective length of database: 15,374,224
Effective search space: 4258660048
Effective search space used: 4258660048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013390
(1146 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132391.2| PREDICTED: ADP-ribosylation factor-like prot... 288 5e-78
Alignment gi|XP_003358554.1| PREDICTED: ADP-ribosylation factor-like prot... 281 4e-76
Alignment gi|XP_003357733.1| PREDICTED: ADP-ribosylation factor-like prot... 225 3e-59
Alignment gi|NP_001072145.1| ADP-ribosylation factor 6 [Sus scrofa]. 125 6e-29
Alignment gi|NP_001153899.1| ADP-ribosylation factor 1 [Sus scrofa]. 121 8e-28
Alignment gi|NP_001138692.1| ADP-ribosylation factor 4 [Sus scrofa]. 120 1e-27
Alignment gi|NP_001026954.1| ADP-ribosylation factor-like protein 1 [Sus ... 117 2e-26
Alignment gi|NP_001153898.1| ADP-ribosylation factor 3 [Sus scrofa]. 116 3e-26
Alignment gi|NP_001041537.1| ADP-ribosylation factor 4 [Sus scrofa]. 115 3e-26
Alignment gi|NP_001138693.1| ADP-ribosylation factor 5 [Sus scrofa]. 115 6e-26
>ref|XP_003132391.2| PREDICTED: ADP-ribosylation factor-like protein 8B-like [Sus
scrofa].
Length = 164
Score = 288 bits (736), Expect = 5e-78
Identities = 142/158 (89%), Positives = 148/158 (93%), Gaps = 3/158 (1%)
Frame = +1
Query: 253 VGLQYSGKTT---FVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMW 423
+GL+Y+ + ++ SGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMW
Sbjct: 1 MGLEYNSNSQPECSNSIKKSGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMW 60
Query: 424 ERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQ 603
ERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQ
Sbjct: 61 ERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQ 120
Query: 604 LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 717
LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
Sbjct: 121 LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 158
>ref|XP_003358554.1| PREDICTED: ADP-ribosylation factor-like protein 8B-like [Sus
scrofa].
Length = 151
Score = 281 bits (720), Expect = 4e-76
Identities = 138/151 (91%), Positives = 138/151 (91%)
Frame = +1
Query: 4 MTCSASWLLLSPPACVRQRRAGAPRSRCGGSGXXXXXXXXXXXXXHPLAHQSSLPTAIML 183
MTCSASWLLLSPPACVRQRRAGAPRSRCGGSG HPLAHQSSLPTAIML
Sbjct: 1 MTCSASWLLLSPPACVRQRRAGAPRSRCGGSGPRPARVEVVAAAAHPLAHQSSLPTAIML 60
Query: 184 ALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTK 363
ALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTK
Sbjct: 61 ALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTK 120
Query: 364 GNVTIKIWDIGGQPRFRSMWERYCRGVNAIV 456
GNVTIKIWDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 121 GNVTIKIWDIGGQPRFRSMWERYCRGVNAIV 151
>ref|XP_003357733.1| PREDICTED: ADP-ribosylation factor-like protein 8A-like [Sus
scrofa].
Length = 133
Score = 225 bits (574), Expect = 3e-59
Identities = 107/119 (89%), Positives = 115/119 (96%), Gaps = 1/119 (0%)
Frame = +1
Query: 364 GNVTI-KIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 540
G V++ +WDIGGQPRFRSMWERYCRGV+AIVYM+DAAD+EKIEAS+NELHNLLDKPQLQ
Sbjct: 9 GGVSVCSLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 68
Query: 541 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 717
GIPVLVLGNKRDLP ALDEK+LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
Sbjct: 69 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 127
>ref|NP_001072145.1| ADP-ribosylation factor 6 [Sus scrofa].
Length = 175
Score = 125 bits (313), Expect = 6e-29
Identities = 58/163 (35%), Positives = 97/163 (59%)
Frame = +1
Query: 220 LFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGG 399
+F +EM + ++GL +GKTT + + GQ S IPTVGFN+ VT NV +WD+GG
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGG 66
Query: 400 QPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 579
Q + R +W Y G +++++D ADR++I+ +R ELH +++ +++ +L+ NK+DL
Sbjct: 67 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
Query: 580 PNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
P+A+ ++ EK+ L+ I+DR D + L WL
Sbjct: 127 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169
>ref|NP_001153899.1| ADP-ribosylation factor 1 [Sus scrofa].
Length = 181
Score = 121 bits (303), Expect = 8e-28
Identities = 55/166 (33%), Positives = 98/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_001138692.1| ADP-ribosylation factor 4 [Sus scrofa].
Length = 181
Score = 120 bits (302), Expect = 1e-27
Identities = 56/166 (33%), Positives = 98/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+SLF K+EM +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKSLFGKKEMRTLMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_001026954.1| ADP-ribosylation factor-like protein 1 [Sus scrofa].
Length = 181
Score = 117 bits (292), Expect = 2e-26
Identities = 54/168 (32%), Positives = 100/168 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F SLF EM + ++GL +GKTT + + G+ IPT+GFN+ VT N+ ++WD
Sbjct: 9 FSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ R W Y +A++Y++D+ DR++I S++EL +L++ +L+ ++V NK
Sbjct: 68 LGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 714
+D+ A+ ++ + L A++DR+ + S + +D ++WL++
Sbjct: 128 QDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 175
>ref|NP_001153898.1| ADP-ribosylation factor 3 [Sus scrofa].
Length = 181
Score = 116 bits (290), Expect = 3e-26
Identities = 53/165 (32%), Positives = 97/165 (58%)
Frame = +1
Query: 214 RSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDI 393
+SL K+EM + +VGL +GKTT + + G+ IPT+GFN+ V +++ +WD+
Sbjct: 10 KSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKSISFTVWDV 68
Query: 394 GGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKR 573
GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK+
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 574 DLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 129 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_001041537.1| ADP-ribosylation factor 4 [Sus scrofa].
Length = 180
Score = 115 bits (289), Expect = 3e-26
Identities = 53/166 (31%), Positives = 96/166 (57%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F LF K++M + +VGL +GKTT + + G+ IPT+GFN+ V N+ +WD
Sbjct: 9 FSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE+I+ +EL +L + +LQ +L+ NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA+ ++ +K+ L ++++R + + + L WL
Sbjct: 128 QDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173
>ref|NP_001138693.1| ADP-ribosylation factor 5 [Sus scrofa].
Length = 180
Score = 115 bits (287), Expect = 6e-26
Identities = 52/166 (31%), Positives = 95/166 (57%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F +F K++M + +VGL +GKTT + + G+ IPT+GFN+ V N+ +WD
Sbjct: 9 FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE+++ S +EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+D+PNA+ +L +K+ L ++ R + + + L WL
Sbjct: 128 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 173
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,867,211
Number of extensions: 554501
Number of successful extensions: 2240
Number of sequences better than 1.0e-05: 85
Number of HSP's gapped: 2187
Number of HSP's successfully gapped: 85
Length of query: 382
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 281
Effective length of database: 8,829,335
Effective search space: 2481043135
Effective search space used: 2481043135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013390
(1146 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080287.1| ADP-ribosylation factor-like protein 8B [Mus mu... 367 e-102
Alignment gi|NP_081099.1| ADP-ribosylation factor-like protein 8A [Mus mu... 346 2e-95
Alignment gi|NP_031507.1| ADP-ribosylation factor 6 [Mus musculus]. 125 8e-29
Alignment gi|NP_031503.1| ADP-ribosylation factor 2 [Mus musculus]. 122 7e-28
Alignment gi|NP_001123880.1| ADP-ribosylation factor 1 [Mus musculus]. 121 1e-27
Alignment gi|NP_031502.1| ADP-ribosylation factor 1 [Mus musculus]. 121 1e-27
Alignment gi|NP_031504.1| ADP-ribosylation factor 3 [Mus musculus]. 118 1e-26
Alignment gi|NP_080135.2| ADP-ribosylation factor-like protein 1 [Mus mus... 116 3e-26
Alignment gi|NP_031506.1| ADP-ribosylation factor 5 [Mus musculus]. 115 8e-26
Alignment gi|NP_062692.1| ADP-ribosylation factor-like protein 3 [Mus mus... 112 7e-25
>ref|NP_080287.1| ADP-ribosylation factor-like protein 8B [Mus musculus].
Length = 186
Score = 367 bits (942), Expect = e-102
Identities = 180/180 (100%), Positives = 180/180 (100%)
Frame = +1
Query: 178 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 357
MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 358 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL 537
TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL 120
Query: 538 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 717
QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
Sbjct: 121 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 180
>ref|NP_081099.1| ADP-ribosylation factor-like protein 8A [Mus musculus].
Length = 186
Score = 346 bits (888), Expect = 2e-95
Identities = 164/180 (91%), Positives = 177/180 (98%)
Frame = +1
Query: 178 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 357
M+AL ++LLDWF++LFWKEEMELTLVGLQYSGKTTFVNVIASGQF+EDMIPTVGFNMRK+
Sbjct: 1 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI 60
Query: 358 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL 537
TKGNVTIK+WDIGGQPRFRSMWERYCRGV+AIVYM+DAAD+EKIEAS+NELHNLLDKPQL
Sbjct: 61 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL 120
Query: 538 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 717
QGIPVLVLGNKRDL ALDEK+LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
Sbjct: 121 QGIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 180
>ref|NP_031507.1| ADP-ribosylation factor 6 [Mus musculus].
Length = 175
Score = 125 bits (313), Expect = 8e-29
Identities = 58/163 (35%), Positives = 97/163 (59%)
Frame = +1
Query: 220 LFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGG 399
+F +EM + ++GL +GKTT + + GQ S IPTVGFN+ VT NV +WD+GG
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGG 66
Query: 400 QPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 579
Q + R +W Y G +++++D ADR++I+ +R ELH +++ +++ +L+ NK+DL
Sbjct: 67 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
Query: 580 PNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
P+A+ ++ EK+ L+ I+DR D + L WL
Sbjct: 127 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169
>ref|NP_031503.1| ADP-ribosylation factor 2 [Mus musculus].
Length = 181
Score = 122 bits (305), Expect = 7e-28
Identities = 56/166 (33%), Positives = 99/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+SLF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_001123880.1| ADP-ribosylation factor 1 [Mus musculus].
Length = 181
Score = 121 bits (303), Expect = 1e-27
Identities = 55/166 (33%), Positives = 98/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_031502.1| ADP-ribosylation factor 1 [Mus musculus].
Length = 181
Score = 121 bits (303), Expect = 1e-27
Identities = 55/166 (33%), Positives = 98/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_031504.1| ADP-ribosylation factor 3 [Mus musculus].
Length = 181
Score = 118 bits (295), Expect = 1e-26
Identities = 54/165 (32%), Positives = 97/165 (58%)
Frame = +1
Query: 214 RSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDI 393
+SL K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD+
Sbjct: 10 KSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDV 68
Query: 394 GGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKR 573
GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK+
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 574 DLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 129 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_080135.2| ADP-ribosylation factor-like protein 1 [Mus musculus].
Length = 181
Score = 116 bits (291), Expect = 3e-26
Identities = 54/168 (32%), Positives = 100/168 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F SLF EM + ++GL +GKTT + + G+ IPT+GFN+ VT N+ ++WD
Sbjct: 9 FSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ R W Y +A++Y++D+ DR++I S++EL +L++ +L+ ++V NK
Sbjct: 68 LGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 714
+D+ A+ ++ + L A++DR+ + S + +D ++WL++
Sbjct: 128 QDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 175
>ref|NP_031506.1| ADP-ribosylation factor 5 [Mus musculus].
Length = 180
Score = 115 bits (287), Expect = 8e-26
Identities = 52/166 (31%), Positives = 95/166 (57%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F +F K++M + +VGL +GKTT + + G+ IPT+GFN+ V N+ +WD
Sbjct: 9 FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE+++ S +EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+D+PNA+ +L +K+ L ++ R + + + L WL
Sbjct: 128 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 173
>ref|NP_062692.1| ADP-ribosylation factor-like protein 3 [Mus musculus].
Length = 182
Score = 112 bits (279), Expect = 7e-25
Identities = 55/162 (33%), Positives = 92/162 (56%)
Frame = +1
Query: 232 EEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRF 411
+E+ + L+GL +GKTT + +AS S + PT GFN++ V + +WDIGGQ +
Sbjct: 16 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 74
Query: 412 RSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNAL 591
R W Y + ++Y+ID+ADR++ E + EL LL++ +L +PVL+ NK+DL A
Sbjct: 75 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 134
Query: 592 DEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 717
++ E +NL I+DR S S + + + W+ ++
Sbjct: 135 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 176
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,656,952
Number of extensions: 754659
Number of successful extensions: 2726
Number of sequences better than 1.0e-05: 92
Number of HSP's gapped: 2661
Number of HSP's successfully gapped: 92
Length of query: 382
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 279
Effective length of database: 12,523,851
Effective search space: 3494154429
Effective search space used: 3494154429
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013390
(1146 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060654.1| ADP-ribosylation factor-like protein 8B [Homo s... 367 e-101
Alignment gi|NP_620150.1| ADP-ribosylation factor-like protein 8A [Homo s... 349 2e-96
Alignment gi|NP_001654.1| ADP-ribosylation factor 6 [Homo sapiens]. 125 1e-28
Alignment gi|NP_001019399.1| ADP-ribosylation factor 1 [Homo sapiens]. 121 1e-27
Alignment gi|NP_001019398.1| ADP-ribosylation factor 1 [Homo sapiens]. 121 1e-27
Alignment gi|NP_001019397.1| ADP-ribosylation factor 1 [Homo sapiens]. 121 1e-27
Alignment gi|NP_001649.1| ADP-ribosylation factor 1 [Homo sapiens]. 121 1e-27
Alignment gi|NP_001650.1| ADP-ribosylation factor 3 [Homo sapiens]. 118 1e-26
Alignment gi|NP_001168.1| ADP-ribosylation factor-like protein 1 [Homo sa... 117 2e-26
Alignment gi|NP_001653.1| ADP-ribosylation factor 5 [Homo sapiens]. 115 1e-25
>ref|NP_060654.1| ADP-ribosylation factor-like protein 8B [Homo sapiens].
Length = 186
Score = 367 bits (942), Expect = e-101
Identities = 180/180 (100%), Positives = 180/180 (100%)
Frame = +1
Query: 178 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 357
MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 358 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL 537
TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL 120
Query: 538 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 717
QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
Sbjct: 121 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 180
>ref|NP_620150.1| ADP-ribosylation factor-like protein 8A [Homo sapiens].
Length = 186
Score = 349 bits (896), Expect = 2e-96
Identities = 165/180 (91%), Positives = 178/180 (98%)
Frame = +1
Query: 178 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 357
M+AL ++LLDWF++LFWKEEMELTLVGLQYSGKTTFVNVIASGQF+EDMIPTVGFNMRK+
Sbjct: 1 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI 60
Query: 358 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL 537
TKGNVTIK+WDIGGQPRFRSMWERYCRGV+AIVYM+DAAD+EKIEAS+NELHNLLDKPQL
Sbjct: 61 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL 120
Query: 538 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 717
QGIPVLVLGNKRDLP ALDEK+LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
Sbjct: 121 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 180
>ref|NP_001654.1| ADP-ribosylation factor 6 [Homo sapiens].
Length = 175
Score = 125 bits (313), Expect = 1e-28
Identities = 58/163 (35%), Positives = 97/163 (59%)
Frame = +1
Query: 220 LFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGG 399
+F +EM + ++GL +GKTT + + GQ S IPTVGFN+ VT NV +WD+GG
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGG 66
Query: 400 QPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 579
Q + R +W Y G +++++D ADR++I+ +R ELH +++ +++ +L+ NK+DL
Sbjct: 67 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
Query: 580 PNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
P+A+ ++ EK+ L+ I+DR D + L WL
Sbjct: 127 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169
>ref|NP_001019399.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 121 bits (303), Expect = 1e-27
Identities = 55/166 (33%), Positives = 98/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_001019398.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 121 bits (303), Expect = 1e-27
Identities = 55/166 (33%), Positives = 98/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_001019397.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 121 bits (303), Expect = 1e-27
Identities = 55/166 (33%), Positives = 98/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_001649.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 121 bits (303), Expect = 1e-27
Identities = 55/166 (33%), Positives = 98/166 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_001650.1| ADP-ribosylation factor 3 [Homo sapiens].
Length = 181
Score = 118 bits (295), Expect = 1e-26
Identities = 54/165 (32%), Positives = 97/165 (58%)
Frame = +1
Query: 214 RSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDI 393
+SL K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD+
Sbjct: 10 KSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDV 68
Query: 394 GGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKR 573
GGQ + R +W Y + +++++D+ DRE++ +R EL +L + +L+ +LV NK+
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 574 DLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
DLPNA++ ++ +K+ L +++ R + D + L WL
Sbjct: 129 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
>ref|NP_001168.1| ADP-ribosylation factor-like protein 1 [Homo sapiens].
Length = 181
Score = 117 bits (293), Expect = 2e-26
Identities = 54/168 (32%), Positives = 100/168 (59%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F SLF EM + ++GL +GKTT + + G+ IPT+GFN+ VT N+ ++WD
Sbjct: 9 FSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ R W Y +A++Y++D+ DR++I S++EL +L++ +L+ ++V NK
Sbjct: 68 LGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 714
+D+ A+ ++ + L A++DR+ + S + +D ++WL++
Sbjct: 128 QDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 175
>ref|NP_001653.1| ADP-ribosylation factor 5 [Homo sapiens].
Length = 180
Score = 115 bits (287), Expect = 1e-25
Identities = 52/166 (31%), Positives = 95/166 (57%)
Frame = +1
Query: 211 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWD 390
F +F K++M + +VGL +GKTT + + G+ IPT+GFN+ V N+ +WD
Sbjct: 9 FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWD 67
Query: 391 IGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNK 570
+GGQ + R +W Y + +++++D+ DRE+++ S +EL +L + +L+ +LV NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 127
Query: 571 RDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 708
+D+PNA+ +L +K+ L ++ R + + + L WL
Sbjct: 128 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 173
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,195,525
Number of extensions: 885976
Number of successful extensions: 3155
Number of sequences better than 1.0e-05: 117
Number of HSP's gapped: 3073
Number of HSP's successfully gapped: 117
Length of query: 382
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 278
Effective length of database: 14,868,908
Effective search space: 4133556424
Effective search space used: 4133556424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013390
(1146 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 876 0.0
Sscrofa_Chr05 482 e-133
gb|GL895870.2| Sus scrofa unplaced genomic scaffold ChrUScaf3754 478 e-132
Sscrofa_Chr10 62 7e-07
>Sscrofa_Chr13
|| Length = 218635234
Score = 876 bits (442), Expect = 0.0
Identities = 458/462 (99%), Gaps = 1/462 (0%)
Strand = Plus / Plus
Query: 686 tagatatcacccttcagtggcttattcaacattcaaaatccagaagaagctgaagcatct 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68045396 tagatatcacccttcagtggcttattcaacattcaaaatccagaagaagctgaagcatct 68045455
Query: 746 cctgaagtcttccagtccttcctggctatcatcctagaattattgtcagttcctctgaag 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68045456 tctgaagtcttccagtccttcctggctatcatcctagaattattgtcagttcctctgaag 68045515
Query: 806 tacttcccagaatacggtccttcctaaacccaagaaattgcctttttcagagttttattt 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68045516 tacttcccagaatacggtccttcctaaacccaagaaattgcctttttcagagttttattt 68045575
Query: 866 ctcatgtgcactgctgaagatgtgtattcctaatccttcataaagaatcatctagagttg 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68045576 ctcatgtgcactgctgaagatgtgtattcctaatccttcataaagaatcatctagagttg 68045635
Query: 926 tcatgataaagtcagcacactcaaaaaggcttcttatacatacttgtcttaaacagtgtg 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68045636 tcatgataaagtcagcacactcaaaaaggcttcttatacatacttgtcttaaacagtgtg 68045695
Query: 986 tagagctttttctaaaaaacacactttgaccatcttaagtccag-aaattgcatatttct 1044
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 68045696 tagagctttttctaaaaaacacactttgaccatcttaagtcaagaaaattgcatatttct 68045755
Query: 1045 gttctggtctttctgggccaagtttttatattggttttcagtaaatgtctatctatgata 1104
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 68045756 gttctggtctttctgggccaggtttttatattggttttcagtaaatgtctatctatgata 68045815
Query: 1105 tttcattatagagtccagtagcttaatactgatactgacttg 1146
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68045816 tttcattatagagtccagtagcttaatactgatactgacttg 68045857
Score = 593 bits (299), Expect = e-167
Identities = 299/299 (100%)
Strand = Plus / Minus
Query: 2 atatgacctgctcggcttcctggcttctgctgtcgccgcccgcctgtgtccgccagcgtc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67921554 atatgacctgctcggcttcctggcttctgctgtcgccgcccgcctgtgtccgccagcgtc 67921495
Query: 62 gcgccggggccccgaggagccgttgcggggggtccgggccaaggcccgctcgtgtggagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67921494 gcgccggggccccgaggagccgttgcggggggtccgggccaaggcccgctcgtgtggagg 67921435
Query: 122 tcgtcgccgcagctgcccacccgcttgcccatcagtcttccctcccgaccgccatcatgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67921434 tcgtcgccgcagctgcccacccgcttgcccatcagtcttccctcccgaccgccatcatgc 67921375
Query: 182 tggcgctcatctcccgcctgctggactggttccgctcgctcttttggaaggaggagatgg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67921374 tggcgctcatctcccgcctgctggactggttccgctcgctcttttggaaggaggagatgg 67921315
Query: 242 agctgacgctcgtggggctgcagtactcgggcaagaccactttcgtcaatgtcatcgcg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67921314 agctgacgctcgtggggctgcagtactcgggcaagaccactttcgtcaatgtcatcgcg 67921256
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 456 ttacatgatagatgctgcagatcgtgaaaagatagaagcttctcgaaatgaactacataa 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67877707 ttacatgatagatgctgcagatcgtgaaaagatagaagcttctcgaaatgaactacataa 67877648
Query: 516 tcttctagataaaccacagttacaaggaattccagt 551
||||||||||||||||||||||||||||||||||||
Sbjct: 67877647 tcttctagataaaccacagttacaaggaattccagt 67877612
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 300 gtcaggtcagttcagtgaagatatgatacccacagtgggcttcaacatgaggaaagtaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67880394 gtcaggtcagttcagtgaagatatgatacccacagtgggcttcaacatgaggaaagtaac 67880335
Query: 360 taaaggtaacgtcacaataaag 381
||||||||||||||||||||||
Sbjct: 67880334 taaaggtaacgtcacaataaag 67880313
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 379 aagatttgggacataggaggacaaccccgcttccggagcatgtgggaacggtactgcaga 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67878402 aagatttgggacataggaggacaaccccgcttccggagcatgtgggaacggtactgcaga 67878343
Query: 439 ggagtcaacgctattgt 455
|||||||||||||||||
Sbjct: 67878342 ggagtcaacgctattgt 67878326
Score = 133 bits (67), Expect = 2e-28
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 618 gaatttgtctgctattcaggatagagaaatttgctgctattcaatttcctgcaaagaaaa 677
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68038830 gaatctgtctgctattcaggatagagaaatttgctgctattcaatttcctgcaaagaaaa 68038889
Query: 678 ggataatatag 688
|||||||||||
Sbjct: 68038890 ggataatatag 68038900
Score = 81.8 bits (41), Expect = 8e-13
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 578 ttcctaatgccttggatgagaaacagctaattgaaaaaatg 618
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 68038504 ttcctaatgccttggatgagaaacagctaattgaaaaaatg 68038544
>Sscrofa_Chr05
|| Length = 111506441
Score = 482 bits (243), Expect = e-133
Identities = 564/665 (84%), Gaps = 27/665 (4%)
Strand = Plus / Plus
Query: 373 acaataaagatttgggacataggaggacaaccccgcttccggagcatgtgggaacggtac 432
|||| ||||||||||| ||||||||||||||| |||||| |||| | |||||| |||||
Sbjct: 4243907 acaaaaaagatttgggttataggaggacaaccctgcttccagagcctatgggaatggtac 4243966
Query: 433 tgcagaggagtcaacgctattgtttacatgatagatgctgcagatcgtgaaaagatagaa 492
||||||||||||| ||||| ||||||||| || | ||| |||||||||||||||
Sbjct: 4243967 tgcagaggagtcagtgctatagtttacatggtaaacgct----atcgtgaaaagatag-- 4244020
Query: 493 gcttctcgaaatgaactacataatcttctagataaaccacagttacaaggaattccagtg 552
| ||| |||||| ||| || ||||| |||| |||||| ||||||| |||||||||
Sbjct: 4244021 -cctct-----tgaactgcatgattttctaaataatccacagctacaaggcattccagtg 4244074
Query: 553 ctagtacttggaaataagagagatcttcctaatgccttggatgagaaacagctaattg-- 610
| ||||||||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4244075 ttcgtacttggaaacaggagagatcttcctaatgccttggatgagaaatagctaattggg 4244134
Query: 611 --aaaaaatgaatttgtctgctattcaggatagagaaatttgctgctattcaatttcctg 668
||||||||||| |||||| ||||||||||| | |||| ||||||||||||||||| ||
Sbjct: 4244135 aaaaaaaatgaatctgtctgttattcaggatataaaaatgtgctgctattcaatttcttg 4244194
Query: 669 caaagaaaaggataatatagatatcacccttcagtggcttattcaacattcaaaatccag 728
||||||||||||||||| | |||||| || || | |||||| ||||||||||||||||
Sbjct: 4244195 caaagaaaaggataatacggttatcacactgcaatcacttatttaacattcaaaatccag 4244254
Query: 729 aagaagctgaagcatctcctgaagtcttccagtccttcctggctatcatcctagaattat 788
||| ||||||| ||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 4244255 aagt---tgaagcacgtcctgaagtcttccagtcctttctggctataatcctagaattac 4244311
Query: 789 tgtcagttcctctgaagtacttcccagaatacggtccttcctaaacccaagaaattgcct 848
|||| ||||||||| ||| |||||||||| ||||||||||| | ||||||||| |
Sbjct: 4244312 tgtccattcctctgatgtatctcccagaatataatccttcctaaatcaaagaaattgttt 4244371
Query: 849 ttttcagagttttatttctcatgtgcactgctgaagatgtgtattc-ctaatccttcata 907
||||||| |||||||||| |||||||||| ||||||||| || |||||||||||||
Sbjct: 4244372 ttttcag---tttatttctc--gtgcactgctaaagatgtgttatctctaatccttcata 4244426
Query: 908 aagaatcatctagagttgtcatgataaagtcagcacactcaaaaaggcttcttatacata 967
|||||||| |||||||| |||||||| ||||||||| ||||||| ||||||||| ||
Sbjct: 4244427 aagaatcaactagagttatcatgata--gtcagcacatacaaaaagccttcttatatgta 4244484
Query: 968 cttgtcttaaacagtgtgtagagctttttctaaaaaacacactttgaccatcttaagtcc 1027
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct: 4244485 cttgtcttaaacagtgtgtagagctttttctaaaaaacacacttcgatcatcttaaatca 4244544
Query: 1028 agaaa 1032
|||||
Sbjct: 4244545 agaaa 4244549
Score = 77.8 bits (39), Expect = 1e-11
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 338 gcttcaacatgaggaaagtaactaaaggtaacgtcacaataaagatttggg 388
||||| ||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 4243586 gcttccacatgaggaaagttactaaaggtaatgtcacaataaagatttggg 4243636
>gb|GL895870.2| Sus scrofa unplaced genomic scaffold ChrUScaf3754
Length = 43455
Score = 478 bits (241), Expect = e-132
Identities = 550/647 (85%), Gaps = 27/647 (4%)
Strand = Plus / Plus
Query: 391 ataggaggacaaccccgcttccggagcatgtgggaacggtactgcagaggagtcaacgct 450
||||||||||||||| |||||| |||| | |||||| |||||||||||||||||| |||
Sbjct: 33389 ataggaggacaaccctgcttccagagcctatgggaatggtactgcagaggagtcagtgct 33448
Query: 451 attgtttacatgatagatgctgcagatcgtgaaaagatagaagcttctcgaaatgaacta 510
|| ||||||||| || | ||| ||||||||||||||| | ||| ||||||
Sbjct: 33449 atagtttacatggtaaacgct----atcgtgaaaagatag---cctct-----tgaactg 33496
Query: 511 cataatcttctagataaaccacagttacaaggaattccagtgctagtacttggaaataag 570
||| || |||||||||| |||||| ||||||| ||||||||| | ||||||||||| | |
Sbjct: 33497 catgattttctagataatccacagctacaaggcattccagtgttcgtacttggaaacagg 33556
Query: 571 agagatcttcctaatgccttggatgagaaacagctaattg----aaaaaatgaatttgtc 626
|||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||
Sbjct: 33557 agagatcttcctaatgccttggatgagaaatagctaattgggaaaaaaaatgaatctgtc 33616
Query: 627 tgctattcaggatagagaaatttgctgctattcaatttcctgcaaagaaaaggataatat 686
|| ||||||||||| | |||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 33617 tgttattcaggatataaaaatgtgctgctattcaatttcttgcaaagaaaaggataatac 33676
Query: 687 agatatcacccttcagtggcttattcaacattcaaaatccagaagaagctgaagcatctc 746
| |||||| || || | |||||| |||||||||||||| ||||| ||||||| ||
Sbjct: 33677 ggttatcacactgcaatcacttatttaacattcaaaatcc---agaagttgaagcacgtc 33733
Query: 747 ctgaagtcttccagtccttcctggctatcatcctagaattattgtcagttcctctgaagt 806
||||||||||||||||||| |||||||| |||||||||||| |||| ||||||||| ||
Sbjct: 33734 ctgaagtcttccagtcctttctggctataatcctagaattactgtccattcctctgatgt 33793
Query: 807 acttcccagaatacggtccttcctaaacccaagaaattgcctttttcagagttttatttc 866
| |||||||||| ||||||||||| | ||||||||| |||||||| ||||||||
Sbjct: 33794 atctcccagaatataatccttcctaaatcaaagaaattgtttttttcag---tttatttc 33850
Query: 867 tcatgtgcactgctgaagatgtg-tattcctaatccttcataaagaatcatctagagttg 925
|| |||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct: 33851 tc--gtgcactgctaaagatgtgttatctctaatccttcataaagaatcaactagagtta 33908
Query: 926 tcatgataaagtcagcacactcaaaaaggcttcttatacatacttgtcttaaacagtgtg 985
||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct: 33909 tcatgat--agtcagcacatacaaaaagccttcttatatgtacttgtcttaaacagtgtg 33966
Query: 986 tagagctttttctaaaaaacacactttgaccatcttaagtccagaaa 1032
|||||||||||||||||||||||||| || |||||||| || |||||
Sbjct: 33967 tagagctttttctaaaaaacacacttcgatcatcttaaatcaagaaa 34013
Score = 77.8 bits (39), Expect = 1e-11
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 338 gcttcaacatgaggaaagtaactaaaggtaacgtcacaataaagatttggg 388
||||| ||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 33206 gcttccacatgaggaaagttactaaaggtaatgtcacaataaagatttggg 33256
>Sscrofa_Chr10
|| Length = 79102373
Score = 61.9 bits (31), Expect = 7e-07
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 385 tgggacataggaggacaaccccgcttccggagcatgtgggaacggtactgcagaggagt 443
|||||||| || ||||| ||||||||||| ||||||||||| || |||||| |||||||
Sbjct: 28718373 tgggacatcgggggacagccccgcttccgtagcatgtgggagcgctactgccgaggagt 28718315
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,661,544
Number of extensions: 272
Number of successful extensions: 272
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 14
Length of query: 1146
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1125
Effective length of database: 2,808,413,156
Effective search space: 3159464800500
Effective search space used: 3159464800500
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)