Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013391
(1469 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539913.2| PREDICTED: similar to GTPase, IMAP family membe... 313 4e-85
Alignment gi|XP_853579.1| PREDICTED: similar to GTPase, IMAP family membe... 192 4e-57
Alignment gi|XP_853560.1| PREDICTED: similar to GTPase, IMAP family membe... 166 5e-41
Alignment gi|XP_539911.2| PREDICTED: similar to GTPase, IMAP family membe... 160 2e-39
Alignment gi|XP_532756.2| PREDICTED: similar to GTPase, IMAP family membe... 146 6e-35
Alignment gi|XP_539912.2| PREDICTED: similar to GTPase, IMAP family membe... 142 8e-34
Alignment gi|XP_853549.1| PREDICTED: similar to GTPase, IMAP family membe... 135 1e-31
>ref|XP_539913.2| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 581
Score = 313 bits (801), Expect = 4e-85
Identities = 165/292 (56%), Positives = 195/292 (66%)
Frame = +1
Query: 418 MEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQ 597
MEGLQ++ A E + LRI+LVGK+GSG+SATGNSILCQ VF+S+LG Q
Sbjct: 273 MEGLQRSRYGTMAEGRDEDNWFATPPSLRIILVGKTGSGRSATGNSILCQPVFESRLGNQ 332
Query: 598 PVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQL 777
PVT+TCQG TGTW GRSILVVDTPS+FEA+AQ QE+Y+ IGDCY T L
Sbjct: 333 PVTKTCQGETGTWNGRSILVVDTPSLFEAEAQTQELYKAIGDCYLLSAPGPHVLLLVTPL 392
Query: 778 GRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQEC 957
GRFT QDA+AV RVKEVFGAGA+RH V+LFTH+EDLAGESL DY+A+TDN LRSLVQEC
Sbjct: 393 GRFTAQDAVAVRRVKEVFGAGAMRHAVVLFTHKEDLAGESLDDYLADTDNHSLRSLVQEC 452
Query: 958 GSRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGE 1137
G RYCAFNNRA+ +EQR+Q GAF SNDLFF+AQ+LQRG G
Sbjct: 453 GRRYCAFNNRATGEEQREQLARLMAVVERLERETGGAFYSNDLFFQAQLLQRGGGGTCGA 512
Query: 1138 GRRHYLAKVLSHIEKQKQDLRQAXXXXXXXXXXXXKNWIVSHDELCVCLVWC 1293
YLA V +EKQK+DLR W++SH + V L+ C
Sbjct: 513 ELGGYLASVRVQVEKQKRDLRGPGSTWACPALLKITKWMLSHIGISVVLIIC 564
Score = 181 bits (458), Expect = 2e-45
Identities = 86/199 (43%), Positives = 120/199 (60%)
Frame = +1
Query: 493 SPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPS 672
S LRI+LVGK+G+GKSATGNSIL + F+S+L QP T+TC + G+W R ++++DTP
Sbjct: 21 SKLRIILVGKTGTGKSATGNSILRKQAFESRLAAQPFTKTCSESQGSWGEREMVIIDTPD 80
Query: 673 IFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRH 852
+F + +Y+++ CY TQLGRFT QD V R+KE+FG +RH
Sbjct: 81 MFSERDHSDSLYKEVERCYLLSAPGPHVLLLVTQLGRFTTQDQQVVQRMKEIFGEDVMRH 140
Query: 853 TVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXX 1032
T++LFTH+EDL GESL DY+ + DN L LV CG R CAF+N A+ ++ DQ
Sbjct: 141 TIVLFTHKEDLKGESLTDYILDIDNKALCKLVAACGGRVCAFDNHATGSDRDDQVKELMA 200
Query: 1033 XXXXXXXXHQGAFLSNDLF 1089
+G +N L+
Sbjct: 201 LMEDLVLERRGEHYTNGLY 219
>ref|XP_853579.1| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 298
Score = 192 bits (489), Expect(2) = 4e-57
Identities = 101/171 (59%), Positives = 116/171 (67%)
Frame = +1
Query: 688 AQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHTVILF 867
AQ QE+Y+ IGDCY T LGRFT QDA+AV RVKEVFGAGA+RH V+LF
Sbjct: 107 AQTQELYKAIGDCYLLSAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGAMRHAVVLF 166
Query: 868 THREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXXXXXXX 1047
TH+EDLAGESL DY+A+TDN LRSLVQECG RYCAFNNRA+ +EQR+Q
Sbjct: 167 THKEDLAGESLDDYLADTDNHSLRSLVQECGRRYCAFNNRATGEEQREQLARLMAVVERL 226
Query: 1048 XXXHQGAFLSNDLFFEAQMLQRGEAEAPGEGRRHYLAKVLSHIEKQKQDLR 1200
GAF SNDLFF+AQ+LQRG G YLA V +EKQK+DLR
Sbjct: 227 ERETGGAFYSNDLFFQAQLLQRGGGGTCGAELGGYLASVRVQVEKQKRDLR 277
Score = 48.9 bits (115), Expect(2) = 4e-57
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3
Query: 549 EQHPLPARVQVQAGDPACDQDVSGGNR 629
EQHPLPA V VQAG+PACDQ+V GG+R
Sbjct: 68 EQHPLPAGVPVQAGEPACDQNVPGGDR 94
>ref|XP_853560.1| PREDICTED: similar to GTPase, IMAP family member 7 [Canis
familiaris].
Length = 291
Score = 166 bits (420), Expect = 5e-41
Identities = 88/241 (36%), Positives = 138/241 (57%)
Frame = +1
Query: 481 NPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVV 660
+P + LRIVLVGK+GSGKSAT N+IL + VF S++ +T+ CQ A+ W+GR +LVV
Sbjct: 3 DPQDNTLRIVLVGKTGSGKSATANTILGRQVFDSRIAAHAITKECQKASREWEGRKLLVV 62
Query: 661 DTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAG 840
DTP +F+ K ++I C QLGR+T+++ V +K VFG
Sbjct: 63 DTPGLFDTKETLDTTCKEISRCVISSCPGPHAILLVLQLGRYTEEEQKTVALIKAVFGKP 122
Query: 841 ALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXX 1020
AL+H ++LFT +++L +SL D++ + D ++L+++ +ECG RYCAFNNRA E+ Q
Sbjct: 123 ALKHMIMLFTRKDNLEDQSLSDFIESAD-VKLKNITKECGDRYCAFNNRAKEAEKEAQVQ 181
Query: 1021 XXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGEGRRHYLAKVLSHIEKQKQDLR 1200
+ GA+ S+D++ + + + +AE + L K + IEK+ L
Sbjct: 182 ELVELIEQMVQSNGGAYFSDDIYKDTEERLKRKAEILKKIYTDQLNKEIKLIEKEYAHLS 241
Query: 1201 Q 1203
Q
Sbjct: 242 Q 242
>ref|XP_539911.2| PREDICTED: similar to GTPase, IMAP family member 1 [Canis
familiaris].
Length = 373
Score = 160 bits (406), Expect = 2e-39
Identities = 94/213 (44%), Positives = 117/213 (54%), Gaps = 1/213 (0%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
L ++LVG++G+GKSATGNSIL F S+L PVTRTC + W G + V DTP +F
Sbjct: 90 LGLILVGRTGAGKSATGNSILGHRSFPSRLAAAPVTRTCALGSRRWAGWRVEVTDTPDLF 149
Query: 679 EAKAQDQEM-YEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHT 855
A+ + + + G CY TQLGRFT QD AV V+E+FG G L
Sbjct: 150 SAEGRRADRGCAERGRCYLLSAPGPHALLLVTQLGRFTAQDEQAVRGVRELFGPGVLARA 209
Query: 856 VILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXXX 1035
V++FT REDLAG S HDYV TDN LR+LV ECG R CA +NRA E+ Q
Sbjct: 210 VVVFTRREDLAGASPHDYVRATDNRALRALVAECGGRVCALDNRAEGAEREAQAGELLAL 269
Query: 1036 XXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPG 1134
H A +ND++ A L RG A G
Sbjct: 270 AARLAREHADAPFTNDVYRLAAEL-RGAAPDGG 301
>ref|XP_532756.2| PREDICTED: similar to GTPase, IMAP family member 4
(Immunity-associated protein 4) (Immunity-associated
nucleotide 1 protein) (hIAN1) [Canis familiaris].
Length = 330
Score = 146 bits (368), Expect = 6e-35
Identities = 82/246 (33%), Positives = 130/246 (52%)
Frame = +1
Query: 466 GEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGR 645
G GS + S LR+VLVGK+G+GKSATGNSIL + VF S + + VT+ C+ + W GR
Sbjct: 21 GLGSQDCRDSQLRLVLVGKTGAGKSATGNSILGEKVFHSSIAAKSVTKVCKKGSSRWHGR 80
Query: 646 SILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKE 825
++VVDTP IF+ + QD + +I C LGR+T ++ A+ ++ +
Sbjct: 81 ELIVVDTPGIFDTEVQDADTCREIAHCILLTSPGPHALLLVVPLGRYTQEERKAMEKILQ 140
Query: 826 VFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQ 1005
+FG A R+ ++LFT ++DL G DY+ + ++ LV RYC FNNRA+ EQ
Sbjct: 141 MFGPRARRYMILLFTRKDDLDGMHFQDYLKDASE-DIQELVDMFRDRYCVFNNRATGTEQ 199
Query: 1006 RDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGEGRRHYLAKVLSHIEKQ 1185
Q ++G +N +F +A+ + + E E R + +E+Q
Sbjct: 200 EAQRMQLLTLVQRVVMENEGGCYTNKMFQKAEEEIQKKIEVLQEFYR-------AELERQ 252
Query: 1186 KQDLRQ 1203
+ +R+
Sbjct: 253 RVQIRE 258
>ref|XP_539912.2| PREDICTED: similar to GTPase, IMAP family member 6 isoform 1 [Canis
familiaris].
Length = 314
Score = 142 bits (358), Expect = 8e-34
Identities = 75/158 (47%), Positives = 94/158 (59%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
LR++LVGKSGSGKSATGNSIL + F S+L QPVTR Q +G W GR + V+DTP +
Sbjct: 98 LRLLLVGKSGSGKSATGNSILGRREFPSRLSPQPVTRDLQRGSGAWAGRELEVIDTPDLL 157
Query: 679 EAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHTV 858
+A + I + TQLGRFT++D AV ++E FG G L HTV
Sbjct: 158 SPQAGPEAAARAICEAVAFSAPGPHAVLLVTQLGRFTEEDRQAVRGLQEAFGVGVLAHTV 217
Query: 859 ILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYC 972
++FT REDL G SL +YV TDNL L C R+C
Sbjct: 218 LVFTRREDLGGGSLEEYVRRTDNLHPALLDAVCARRHC 255
>ref|XP_853549.1| PREDICTED: similar to GTPase, IMAP family member 8 [Canis
familiaris].
Length = 723
Score = 135 bits (340), Expect = 1e-31
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Frame = +1
Query: 496 PLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSI 675
PL +VLVGKSG GKSATGN+IL + F S+ QPVTRTCQ + W + ++VVD PS+
Sbjct: 498 PLSLVLVGKSGPGKSATGNTILGRPDFLSQFRAQPVTRTCQSSRRLWGQQEVVVVDMPSL 557
Query: 676 ---FEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGAL 846
A+ ++ E++ C+ QLG FT +D AV ++ +FG L
Sbjct: 558 CLMASAEGGPSQLEEEVRRCWSCCKGNKILVLVF-QLGWFTQEDKRAVKELETIFGEEVL 616
Query: 847 RHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQ 1014
++T++LFT +EDL + + DY+ N +N L+++++ CG R CAFNN+ + Q + DQ
Sbjct: 617 KYTIVLFTRKEDLEVD-IADYIKNAENRTLQNIIKRCGGRICAFNNKETGQAREDQ 671
Score = 128 bits (321), Expect = 2e-29
Identities = 70/186 (37%), Positives = 107/186 (57%), Gaps = 2/186 (1%)
Frame = +1
Query: 463 GGEGSLNPGSS--PLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTW 636
G E PG S LR++L+G+SG GKSATGN+IL + +F SK Q VT+ CQ +
Sbjct: 58 GQEREPEPGCSRPELRLLLLGRSGVGKSATGNTILGRSMFVSKFSNQMVTKVCQRESRAT 117
Query: 637 QGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMR 816
+++V+DTP +F + + ++ +I C +G + +D V
Sbjct: 118 GEGTLVVIDTPYLFSSMSPAEDKQRNIERCLELCAPSLHVLLLVIAIGCYELEDKEVVCG 177
Query: 817 VKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASA 996
V+EVFGA A R+ +++FT ++DL G+S+ DY+ D+ LR LV+ CG RYCA NN+ S
Sbjct: 178 VQEVFGAEARRYMIVVFTRKDDLEGDSVQDYIEGLDS--LRELVENCGGRYCALNNKGSE 235
Query: 997 QEQRDQ 1014
+E+ Q
Sbjct: 236 EERVGQ 241
Score = 102 bits (253), Expect = 1e-21
Identities = 56/178 (31%), Positives = 97/178 (54%)
Frame = +1
Query: 481 NPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVV 660
NPG L+++LVGK G+GKSA GNS+L + VF++K + VTR + W+ R ++++
Sbjct: 302 NPGIHELKVLLVGKRGAGKSAAGNSLLGKRVFETKFSEESVTRRFVLESRIWRERRVVII 361
Query: 661 DTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAG 840
DTP I +K E+ + T LG F+ +D + + ++ FG
Sbjct: 362 DTPDISSSKDIKAELRRHV-------FGGPHAFLLVTPLGSFSKKDEVVLDTLQASFGDK 414
Query: 841 ALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQ 1014
+ + +ILFT +EDL + L ++ + + L L+++C RYC F+ R + +E++ Q
Sbjct: 415 FVEYLIILFTRKEDLGDQDLEMFL-KSRSTALCKLIKKCKDRYCVFSYRVTREEEQHQ 471
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,038,513
Number of extensions: 1480871
Number of successful extensions: 6125
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6062
Number of HSP's successfully gapped: 11
Length of query: 489
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 382
Effective length of database: 15,307,552
Effective search space: 5847484864
Effective search space used: 5847484864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013391
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013391
(1469 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like... 367 e-101
Alignment gi|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like is... 365 e-101
Alignment gi|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like... 350 1e-96
Alignment gi|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like... 349 4e-96
Alignment gi|NP_001073729.1| GTPase, IMAP family member 5-like [Bos tauru... 299 5e-81
Alignment gi|NP_001073237.1| GTPase, IMAP family member 5 [Bos taurus]. 230 2e-60
Alignment gi|XP_002687087.1| PREDICTED: GTPase, IMAP family member 1-like... 158 1e-38
Alignment gi|XP_002687086.1| PREDICTED: GTPase, IMAP family member 1-like... 158 1e-38
Alignment gi|XP_001252736.2| PREDICTED: GTPase, IMAP family member 1-like... 158 1e-38
Alignment gi|XP_872704.2| PREDICTED: GTPase, IMAP family member 1-like is... 158 1e-38
>ref|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos taurus].
Length = 321
Score = 367 bits (942), Expect = e-101
Identities = 189/321 (58%), Positives = 221/321 (68%)
Frame = +1
Query: 376 MACYQSLGQTHHNKMEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNS 555
M+ YQ LG +HNKMEGLQ+ G D+C T GG SLNP SS LRI+LVGK+GSG+SATGNS
Sbjct: 1 MSGYQLLGHIYHNKMEGLQQGGGDSCTTGGGGESLNPESSSLRIILVGKTGSGRSATGNS 60
Query: 556 ILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXX 735
ILCQ +F+SKLG Q VTR CQ ATG W GRSI+VVDTP IFEA+AQDQE+YE+IG CY
Sbjct: 61 ILCQPMFESKLGAQAVTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLL 120
Query: 736 XXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVA 915
TQLGRFT+QD +AV RVKEVFGAGA R+ VILFTH+EDL G SL +YVA
Sbjct: 121 SVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGGGSLDEYVA 180
Query: 916 NTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFE 1095
NTDNLRLR LV+ECG RYCAFNNRA EQR+Q HQG FL+N+LF +
Sbjct: 181 NTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVFLTNELFSD 240
Query: 1096 AQMLQRGEAEAPGEGRRHYLAKVLSHIEKQKQDLRQAXXXXXXXXXXXXKNWIVSHDELC 1275
AQML + +A GEG+R YL KV + KQ+Q L++A + WIV + ELC
Sbjct: 241 AQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQGLKEAESNCAFKTVFRLRAWIVVNYELC 300
Query: 1276 VCLVWCSXXXXXXXXXXWYHL 1338
VCLVWCS YHL
Sbjct: 301 VCLVWCSLLFLLILLIILYHL 321
>ref|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos taurus].
Length = 321
Score = 365 bits (938), Expect = e-101
Identities = 188/321 (58%), Positives = 221/321 (68%)
Frame = +1
Query: 376 MACYQSLGQTHHNKMEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNS 555
M+ YQ LG +HNKMEGL++ G D+C T GG SLNP SS LRI+LVGK+GSG+SATGNS
Sbjct: 1 MSGYQLLGHIYHNKMEGLRQGGGDSCTTGGGGESLNPESSSLRIILVGKTGSGRSATGNS 60
Query: 556 ILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXX 735
ILCQ +F+SKLG Q VTR CQ ATG W GRSI+VVDTP IFEA+AQDQE+YE+IG CY
Sbjct: 61 ILCQPMFESKLGAQAVTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLL 120
Query: 736 XXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVA 915
TQLGRFT+QD +AV RVKEVFGAGA R+ VILFTH+EDL G SL +YVA
Sbjct: 121 SVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGGGSLDEYVA 180
Query: 916 NTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFE 1095
NTDNLRLR LV+ECG RYCAFNNRA EQR+Q HQG FL+N+LF +
Sbjct: 181 NTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVFLTNELFSD 240
Query: 1096 AQMLQRGEAEAPGEGRRHYLAKVLSHIEKQKQDLRQAXXXXXXXXXXXXKNWIVSHDELC 1275
AQML + +A GEG+R YL KV + KQ+Q L++A + WIV + ELC
Sbjct: 241 AQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQGLKEAESNCAFKTVFRLRAWIVVNYELC 300
Query: 1276 VCLVWCSXXXXXXXXXXWYHL 1338
VCLVWCS YHL
Sbjct: 301 VCLVWCSLLFLLILLIILYHL 321
>ref|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos taurus].
Length = 307
Score = 350 bits (899), Expect = 1e-96
Identities = 181/307 (58%), Positives = 211/307 (68%)
Frame = +1
Query: 418 MEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQ 597
MEGLQ+ G D+C T GG SLNP SS LRI+LVGK+GSG+SATGNSILCQ +F+SKLG Q
Sbjct: 1 MEGLQQGGGDSCTTGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQ 60
Query: 598 PVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQL 777
VTR CQ ATG W GRSI+VVDTP IFEA+AQDQE+YE+IG CY TQL
Sbjct: 61 AVTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQL 120
Query: 778 GRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQEC 957
GRFT+QD +AV RVKEVFGAGA R+ VILFTH+EDL G SL +YVANTDNLRLR LV+EC
Sbjct: 121 GRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVREC 180
Query: 958 GSRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGE 1137
G RYCAFNNRA EQR+Q HQG FL+N+LF +AQML + +A GE
Sbjct: 181 GRRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVFLTNELFSDAQMLLQMGGDAHGE 240
Query: 1138 GRRHYLAKVLSHIEKQKQDLRQAXXXXXXXXXXXXKNWIVSHDELCVCLVWCSXXXXXXX 1317
G+R YL KV + KQ+Q L++A + WIV + ELCVCLVWCS
Sbjct: 241 GQRRYLNKVRLQVAKQRQGLKEAESNCAFKTVFRLRAWIVVNYELCVCLVWCSLLFLLIL 300
Query: 1318 XXXWYHL 1338
YHL
Sbjct: 301 LIILYHL 307
>ref|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like [Bos taurus].
Length = 307
Score = 349 bits (895), Expect = 4e-96
Identities = 180/307 (58%), Positives = 211/307 (68%)
Frame = +1
Query: 418 MEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQ 597
MEGL++ G D+C T GG SLNP SS LRI+LVGK+GSG+SATGNSILCQ +F+SKLG Q
Sbjct: 1 MEGLRQGGGDSCTTGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQ 60
Query: 598 PVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQL 777
VTR CQ ATG W GRSI+VVDTP IFEA+AQDQE+YE+IG CY TQL
Sbjct: 61 AVTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQL 120
Query: 778 GRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQEC 957
GRFT+QD +AV RVKEVFGAGA R+ VILFTH+EDL G SL +YVANTDNLRLR LV+EC
Sbjct: 121 GRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVREC 180
Query: 958 GSRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGE 1137
G RYCAFNNRA EQR+Q HQG FL+N+LF +AQML + +A GE
Sbjct: 181 GRRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVFLTNELFSDAQMLLQMGGDAHGE 240
Query: 1138 GRRHYLAKVLSHIEKQKQDLRQAXXXXXXXXXXXXKNWIVSHDELCVCLVWCSXXXXXXX 1317
G+R YL KV + KQ+Q L++A + WIV + ELCVCLVWCS
Sbjct: 241 GQRRYLNKVRLQVAKQRQGLKEAESNCAFKTVFRLRAWIVVNYELCVCLVWCSLLFLLIL 300
Query: 1318 XXXWYHL 1338
YHL
Sbjct: 301 LIILYHL 307
>ref|NP_001073729.1| GTPase, IMAP family member 5-like [Bos taurus].
Length = 297
Score = 299 bits (765), Expect = 5e-81
Identities = 161/268 (60%), Positives = 187/268 (69%)
Frame = +1
Query: 490 SSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTP 669
SS LRI+LVGK+GSG+SAT NSIL Q +F+SKLG Q VTR CQ ATGTW GRSILVVD P
Sbjct: 14 SSSLRIILVGKTGSGESATRNSILSQPMFESKLGAQSVTRKCQRATGTWNGRSILVVDMP 73
Query: 670 SIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALR 849
IFE++AQDQE+YE+IG CY TQLG FT QD +A+ RVKEVFGAGA R
Sbjct: 74 PIFESRAQDQEVYENIGACYLLSVPGPHVLLLVTQLGHFTKQDVVAMTRVKEVFGAGAER 133
Query: 850 HTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXX 1029
+ VILFTH+EDLAG SL +Y+ANTDNLRLRSLVQ+C RYCAFNN AS EQR Q
Sbjct: 134 YMVILFTHKEDLAGGSLDEYMANTDNLRLRSLVQKCRRRYCAFNNWASGDEQRGQLAQLM 193
Query: 1030 XXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGEGRRHYLAKVLSHIEKQKQDLRQAX 1209
HQGAFL+N+LFF+AQMLQ+ A GEG+R YL KV + KQKQDL++A
Sbjct: 194 AVIEGLEREHQGAFLTNELFFDAQMLQQMGGGAHGEGQRRYLDKVRLQVAKQKQDLKEAE 253
Query: 1210 XXXXXXXXXXXKNWIVSHDELCVCLVWC 1293
K WIVSH ++ V LV C
Sbjct: 254 RNSAFKALLRLKAWIVSHAKIFV-LVLC 280
>ref|NP_001073237.1| GTPase, IMAP family member 5 [Bos taurus].
Length = 214
Score = 230 bits (587), Expect = 2e-60
Identities = 121/183 (66%), Positives = 138/183 (75%)
Frame = +1
Query: 418 MEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQ 597
MEGLQ++ A G E SS LRI+LVGK+GSG+SATGNSILCQ VF+SKLG+Q
Sbjct: 1 MEGLQRSRYGTMAEGGIEHQGFEPSSSLRIILVGKTGSGRSATGNSILCQPVFESKLGSQ 60
Query: 598 PVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQL 777
VTR CQ ATG W GRSI+VVDTP IFEA+AQDQE+YE+IG CY TQL
Sbjct: 61 AVTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQL 120
Query: 778 GRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQEC 957
GRFT+QD +AV RVKEVFGAGA R+ VILFTH+EDL G SL +YVANTDNLRLR LV+EC
Sbjct: 121 GRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLEGGSLDEYVANTDNLRLRRLVREC 180
Query: 958 GSR 966
G R
Sbjct: 181 GRR 183
>ref|XP_002687087.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos taurus].
Length = 310
Score = 158 bits (400), Expect = 1e-38
Identities = 91/204 (44%), Positives = 115/204 (56%), Gaps = 1/204 (0%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
LR++L G+SG+GKSATGNSIL + F S+L T VTR C + W + V+DTP +F
Sbjct: 40 LRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPDLF 99
Query: 679 EAK-AQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHT 855
+ AQ +++ G CY TQLGRFT QD A VK +FGAG H
Sbjct: 100 SPEVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHA 159
Query: 856 VILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXXX 1035
V++FT REDL G SL YV +TDN LR LV ECG R CAF+NRA+ E+ Q
Sbjct: 160 VVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVGELMGL 219
Query: 1036 XXXXXXXHQGAFLSNDLFFEAQML 1107
H GA +ND++ AQ L
Sbjct: 220 VEELVRDHGGAPYTNDVYRLAQTL 243
>ref|XP_002687086.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos taurus].
Length = 298
Score = 158 bits (400), Expect = 1e-38
Identities = 91/204 (44%), Positives = 115/204 (56%), Gaps = 1/204 (0%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
LR++L G+SG+GKSATGNSIL + F S+L T VTR C + W + V+DTP +F
Sbjct: 28 LRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPDLF 87
Query: 679 EAK-AQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHT 855
+ AQ +++ G CY TQLGRFT QD A VK +FGAG H
Sbjct: 88 SPEVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHA 147
Query: 856 VILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXXX 1035
V++FT REDL G SL YV +TDN LR LV ECG R CAF+NRA+ E+ Q
Sbjct: 148 VVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVGELMGL 207
Query: 1036 XXXXXXXHQGAFLSNDLFFEAQML 1107
H GA +ND++ AQ L
Sbjct: 208 VEELVRDHGGAPYTNDVYRLAQTL 231
>ref|XP_001252736.2| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos taurus].
Length = 310
Score = 158 bits (400), Expect = 1e-38
Identities = 91/204 (44%), Positives = 115/204 (56%), Gaps = 1/204 (0%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
LR++L G+SG+GKSATGNSIL + F S+L T VTR C + W + V+DTP +F
Sbjct: 40 LRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPDLF 99
Query: 679 EAK-AQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHT 855
+ AQ +++ G CY TQLGRFT QD A VK +FGAG H
Sbjct: 100 SPEVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHA 159
Query: 856 VILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXXX 1035
V++FT REDL G SL YV +TDN LR LV ECG R CAF+NRA+ E+ Q
Sbjct: 160 VVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVGELMGL 219
Query: 1036 XXXXXXXHQGAFLSNDLFFEAQML 1107
H GA +ND++ AQ L
Sbjct: 220 VEELVRDHGGAPYTNDVYRLAQTL 243
>ref|XP_872704.2| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos taurus].
Length = 298
Score = 158 bits (400), Expect = 1e-38
Identities = 91/204 (44%), Positives = 115/204 (56%), Gaps = 1/204 (0%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
LR++L G+SG+GKSATGNSIL + F S+L T VTR C + W + V+DTP +F
Sbjct: 28 LRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPDLF 87
Query: 679 EAK-AQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHT 855
+ AQ +++ G CY TQLGRFT QD A VK +FGAG H
Sbjct: 88 SPEVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHA 147
Query: 856 VILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXXX 1035
V++FT REDL G SL YV +TDN LR LV ECG R CAF+NRA+ E+ Q
Sbjct: 148 VVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVGELMGL 207
Query: 1036 XXXXXXXHQGAFLSNDLFFEAQML 1107
H GA +ND++ AQ L
Sbjct: 208 VEELVRDHGGAPYTNDVYRLAQTL 231
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,897,278
Number of extensions: 1446418
Number of successful extensions: 5622
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 5546
Number of HSP's successfully gapped: 24
Length of query: 489
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 383
Effective length of database: 14,174,046
Effective search space: 5428659618
Effective search space used: 5428659618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013391
(1469 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like ... 177 1e-44
Alignment gi|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like ... 155 5e-38
Alignment gi|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like ... 154 9e-38
Alignment gi|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like ... 147 1e-35
Alignment gi|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP ... 119 4e-27
Alignment gi|XP_003134606.2| PREDICTED: GTPase IMAP family member 7-like ... 67 3e-11
Alignment gi|XP_003360131.1| PREDICTED: nitric oxide synthase, endothelia... 64 2e-10
>ref|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like [Sus scrofa].
Length = 280
Score = 177 bits (450), Expect = 1e-44
Identities = 88/203 (43%), Positives = 123/203 (60%)
Frame = +1
Query: 493 SPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPS 672
S LRI+LVGK+G+GKSATGNSIL + VF+S+L Q +T+TC + G+W+GR ++V+DTP
Sbjct: 66 SELRIILVGKTGTGKSATGNSILGKQVFESRLSAQSLTKTCSVSRGSWRGREMVVIDTPD 125
Query: 673 IFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRH 852
+F + + +YE++ C+ TQLGRFT +D V RVKE+FGA LRH
Sbjct: 126 MFSGRDPSESLYEEVQRCFLLSAPGPHVLLLVTQLGRFTTKDEQVVRRVKELFGADVLRH 185
Query: 853 TVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXX 1032
T++LFT +EDL G SL Y+ +DN L LV CG R CAFNNRA + Q
Sbjct: 186 TIVLFTRKEDLEGGSLMHYIHGSDNKALSKLVAACGGRVCAFNNRARGSNRDAQVKELMD 245
Query: 1033 XXXXXXXXHQGAFLSNDLFFEAQ 1101
+G +N L+ +++
Sbjct: 246 LIESLVRAKKGDCYTNQLYRQSE 268
>ref|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like [Sus scrofa].
Length = 296
Score = 155 bits (392), Expect = 5e-38
Identities = 99/258 (38%), Positives = 133/258 (51%), Gaps = 2/258 (0%)
Frame = +1
Query: 424 GLQKAGEDACATAGGEGSLNPGSSP-LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQP 600
G QK D G E P LR++L G++G+GKS+TGNSIL + F S+L
Sbjct: 6 GRQKKPRDEENPHGSEDLQAALQEPRLRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATS 65
Query: 601 VTRTCQGATGTWQGRSILVVDTPSIFEAK-AQDQEMYEDIGDCYXXXXXXXXXXXXXTQL 777
VTR+C A+G W + V+DTP +F ++ A+ ++ G CY TQL
Sbjct: 66 VTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYLLAAPGPHALLLVTQL 125
Query: 778 GRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQEC 957
GRFT QD A VK +FG G HT+++FT +EDLA SL DYV +++N LR LV EC
Sbjct: 126 GRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAEC 185
Query: 958 GSRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGE 1137
G R CAFNNRA+ EQ Q GA +ND++ AQ L G
Sbjct: 186 GGRVCAFNNRATGPEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQAL-------GGV 238
Query: 1138 GRRHYLAKVLSHIEKQKQ 1191
L KV + +++Q
Sbjct: 239 SPEERLRKVAERVAQKQQ 256
>ref|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like isoform 2 [Sus scrofa].
Length = 299
Score = 154 bits (390), Expect = 9e-38
Identities = 87/204 (42%), Positives = 117/204 (57%), Gaps = 1/204 (0%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
LR++L G++G+GKS+TGNSIL + F S+L VTR+C A+G W + V+DTP +F
Sbjct: 28 LRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLF 87
Query: 679 EAK-AQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHT 855
++ A+ ++ G CY TQLGRFT QD A VK +FG G HT
Sbjct: 88 SSEVARTDPDCKERGRCYLLAAPGPHALLLVTQLGRFTAQDQQAWRGVKALFGDGVSAHT 147
Query: 856 VILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXXX 1035
+++FT +EDLA SL DYV +++N LR LV ECG R CAFNNRA+ EQ Q
Sbjct: 148 IVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELLRL 207
Query: 1036 XXXXXXXHQGAFLSNDLFFEAQML 1107
GA +ND++ AQ L
Sbjct: 208 VEDLVRDRGGAPYTNDVYHLAQAL 231
>ref|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like [Sus scrofa].
Length = 270
Score = 147 bits (372), Expect = 1e-35
Identities = 79/194 (40%), Positives = 104/194 (53%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
LR++LVGK GSGKSATGNSIL + +FK KL ++PVT+ Q W GR + V+DTP I
Sbjct: 77 LRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDIL 136
Query: 679 EAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHTV 858
+A + TQLGRFT +D V R++EVFG G L HT+
Sbjct: 137 SPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTI 196
Query: 859 ILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXXXX 1038
++FT +EDL G SL +Y+ TDN L L C R+C FNN+ EQ Q
Sbjct: 197 LVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVEGAEQEAQLEELMQQI 256
Query: 1039 XXXXXXHQGAFLSN 1080
++G + SN
Sbjct: 257 ESILWENEGHYYSN 270
>ref|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP family member 4-like [Sus
scrofa].
Length = 315
Score = 119 bits (298), Expect = 4e-27
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 3/189 (1%)
Frame = +1
Query: 457 TAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTW 636
T+ G N S LR+VLVGK+G+GKSATGNSIL + VF S + + +T+ C+ TW
Sbjct: 11 TSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTW 70
Query: 637 QGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMR 816
+ R ++VVDTP IF+ + Q+++ ++I C LGR T Q A A +
Sbjct: 71 KEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGXHALLLVIPLGR-TRQRAQASSK 129
Query: 817 VKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASA 996
+ V G A++ + L T ++DL G H+Y +R L+ + +RYC NNRA+
Sbjct: 130 IXPV-GERAMQRMIXLVTRKDDLEGTDFHEYXREASE-SVRELMGKFRNRYCVVNNRATG 187
Query: 997 QE---QRDQ 1014
+E QRDQ
Sbjct: 188 EERKRQRDQ 196
>ref|XP_003134606.2| PREDICTED: GTPase IMAP family member 7-like [Sus scrofa].
Length = 208
Score = 66.6 bits (161), Expect = 3e-11
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Frame = +1
Query: 808 VMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNN- 984
VM +K VFG AL+H ++LFT ++DL SL D++ + D L+ +++ECG+RYCAF+N
Sbjct: 20 VMLIKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNC 78
Query: 985 -RASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAE 1125
R E+ Q + GA+ ++ ++ + R E
Sbjct: 79 SRTDQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKE 126
>ref|XP_003360131.1| PREDICTED: nitric oxide synthase, endothelial-like [Sus scrofa].
Length = 767
Score = 63.9 bits (154), Expect = 2e-10
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Frame = +1
Query: 817 VKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNN--RA 990
+K VFG AL+H ++LFT ++DL SL D++ + D L+ +++ECG+RYCAF+N R
Sbjct: 582 IKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNCSRT 640
Query: 991 SAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAE 1125
E+ Q + GA+ ++ ++ + R E
Sbjct: 641 DQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKE 685
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,779,693
Number of extensions: 930730
Number of successful extensions: 3715
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3689
Number of HSP's successfully gapped: 7
Length of query: 489
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 386
Effective length of database: 8,779,541
Effective search space: 3388902826
Effective search space used: 3388902826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013391
(1469 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112537.2| GTPase IMAP family member 3 [Mus musculus]. 264 1e-70
Alignment gi|NP_778200.1| GTPase IMAP family member 5 [Mus musculus]. 256 4e-68
Alignment gi|NP_787056.1| GTPase IMAP family member 1 [Mus musculus]. 169 5e-42
Alignment gi|NP_032402.2| GTPase IMAP family member 1 [Mus musculus]. 169 5e-42
Alignment gi|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus]. 145 1e-34
Alignment gi|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus]. 143 4e-34
Alignment gi|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musc... 132 5e-31
Alignment gi|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus]. 130 3e-30
Alignment gi|NP_997651.1| GTPase IMAP family member 8 [Mus musculus]. 130 3e-30
Alignment gi|NP_694815.1| GTPase IMAP family member 6 [Mus musculus]. 127 2e-29
>ref|NP_112537.2| GTPase IMAP family member 3 [Mus musculus].
Length = 301
Score = 264 bits (675), Expect = 1e-70
Identities = 146/290 (50%), Positives = 177/290 (61%)
Frame = +1
Query: 418 MEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQ 597
ME LQ T G +G GS PLRI+LVGKSG GKSATGNS+L + F+S+L Q
Sbjct: 1 METLQNV-----VTGGKKGGCTSGSRPLRILLVGKSGCGKSATGNSLLRRPAFESRLRGQ 55
Query: 598 PVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQL 777
VTRT Q TGTW+GRSILVVDTP IFE+KAQ+Q+M +DIGDCY TQL
Sbjct: 56 SVTRTSQAETGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQL 115
Query: 778 GRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQEC 957
GRFT +D +AV VKEVFG G +RH ++LFT +EDLA +SL ++V +TDN LRSLVQEC
Sbjct: 116 GRFTAEDVMAVRMVKEVFGVGVMRHMIVLFTRKEDLAEKSLEEFVTHTDNRSLRSLVQEC 175
Query: 958 GSRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGE 1137
G RYCAFNNRAS +EQ+ Q +G+F SNDLF A+ L R E
Sbjct: 176 GRRYCAFNNRASGEEQQGQLAELMALVRRLEQECEGSFHSNDLFLHAETLLREGYSVHQE 235
Query: 1138 GRRHYLAKVLSHIEKQKQDLRQAXXXXXXXXXXXXKNWIVSHDELCVCLV 1287
R YLAKV +EKQ+ +L + K V H + C LV
Sbjct: 236 AYRCYLAKVRQEVEKQRWELEEQEGSWVLKVLPIGKKLEVLHSDFCWYLV 285
>ref|NP_778200.1| GTPase IMAP family member 5 [Mus musculus].
Length = 308
Score = 256 bits (653), Expect = 4e-68
Identities = 144/290 (49%), Positives = 176/290 (60%)
Frame = +1
Query: 418 MEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQ 597
ME LQK+ G E SS LRI+LVGKSG GKSATGNSIL + F+S+L Q
Sbjct: 1 MEHLQKSTYGTIVQ-GPEAHCVQESSCLRILLVGKSGCGKSATGNSILRRPAFQSRLRGQ 59
Query: 598 PVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQL 777
VTRT Q TGTW+GRSILVVDTP IFE+KAQ+Q+M +DIGDCY TQL
Sbjct: 60 SVTRTSQAETGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQL 119
Query: 778 GRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQEC 957
GRFT +DA+AV VKEVFG G +RH ++LFT +EDL +SL ++V +TDN LRSL QEC
Sbjct: 120 GRFTAEDAMAVRMVKEVFGVGVMRHMIVLFTRKEDLEEKSLEEFVTHTDNRSLRSLTQEC 179
Query: 958 GSRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGE 1137
G RYCAFNNRAS +EQ+ Q +G+F SNDLF A+ L R E
Sbjct: 180 GRRYCAFNNRASGEEQQGQLAELMALVRRLEQECEGSFHSNDLFLHAEALLREGYSVHQE 239
Query: 1138 GRRHYLAKVLSHIEKQKQDLRQAXXXXXXXXXXXXKNWIVSHDELCVCLV 1287
R YLAKV +EKQ+++L + K+ SH C L+
Sbjct: 240 AYRCYLAKVRQEVEKQRRELEEQEGSWIAKMICTVKSCWSSHTAACALLI 289
>ref|NP_787056.1| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 169 bits (428), Expect = 5e-42
Identities = 96/223 (43%), Positives = 124/223 (55%), Gaps = 1/223 (0%)
Frame = +1
Query: 424 GLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPV 603
G +K D G E S P LR++LVG++G+GKSATGNSIL Q F S+LG PV
Sbjct: 2 GGRKMARDEEDAYGSEDSRAPQMPQLRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPV 61
Query: 604 TRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEM-YEDIGDCYXXXXXXXXXXXXXTQLG 780
TR+C A+ W G + VVDTP IF ++ + + C+ TQLG
Sbjct: 62 TRSCTLASRMWAGWQVEVVDTPDIFSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLG 121
Query: 781 RFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECG 960
RFT QD+ A+ VK +FG + TV++FT +EDLAG+SL DYV TDN LR LV ECG
Sbjct: 122 RFTMQDSQALAAVKRLFGKQVMARTVVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECG 181
Query: 961 SRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLF 1089
R CA NNRA+ E+ Q H GA SN+++
Sbjct: 182 GRVCALNNRATGSEREAQAEQLLGMVACLVREHGGAHYSNEVY 224
>ref|NP_032402.2| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 169 bits (428), Expect = 5e-42
Identities = 96/223 (43%), Positives = 124/223 (55%), Gaps = 1/223 (0%)
Frame = +1
Query: 424 GLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPV 603
G +K D G E S P LR++LVG++G+GKSATGNSIL Q F S+LG PV
Sbjct: 2 GGRKMARDEEDAYGSEDSRAPQMPQLRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPV 61
Query: 604 TRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEM-YEDIGDCYXXXXXXXXXXXXXTQLG 780
TR+C A+ W G + VVDTP IF ++ + + C+ TQLG
Sbjct: 62 TRSCTLASRMWAGWQVEVVDTPDIFSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLG 121
Query: 781 RFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECG 960
RFT QD+ A+ VK +FG + TV++FT +EDLAG+SL DYV TDN LR LV ECG
Sbjct: 122 RFTMQDSQALAAVKRLFGKQVMARTVVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECG 181
Query: 961 SRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLF 1089
R CA NNRA+ E+ Q H GA SN+++
Sbjct: 182 GRVCALNNRATGSEREAQAEQLLGMVACLVREHGGAHYSNEVY 224
>ref|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus].
Length = 291
Score = 145 bits (365), Expect = 1e-34
Identities = 77/233 (33%), Positives = 128/233 (54%)
Frame = +1
Query: 487 GSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDT 666
G + +RI+LVGK+G+GKSAT N+IL + F SK+ VT+TCQ A W+G++++VVDT
Sbjct: 5 GDTEVRIILVGKTGNGKSATANTILGRRQFDSKICANAVTKTCQRAYREWKGKNLVVVDT 64
Query: 667 PSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGAL 846
P +F+ K + +I C +L R+T+++ V +K +FG AL
Sbjct: 65 PGLFDTKETMKTTCFEISRCVLYSCPGPHAIILVLRLDRYTEEEQKTVALIKGLFGEAAL 124
Query: 847 RHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXX 1026
++ +ILFTH+EDL +SL ++V++ +L +++ +CG RY AFNN+A+ EQ +Q
Sbjct: 125 KYMIILFTHKEDLEDQSLDNFVSDAGE-KLNNIISQCGKRYLAFNNKAALDEQENQVQQL 183
Query: 1027 XXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGEGRRHYLAKVLSHIEKQ 1185
+ G++ S+ ++ + E E L + IEK+
Sbjct: 184 IELTEKMVAQNGGSYFSDKIYKDIDSRLNHCLEELKETYAQQLTSEIERIEKE 236
>ref|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus].
Length = 293
Score = 143 bits (360), Expect = 4e-34
Identities = 74/214 (34%), Positives = 121/214 (56%)
Frame = +1
Query: 484 PGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVD 663
P + LRIVLVGK+GSGKSAT N+IL Q F S++ VT+ CQ + W+ R +LVVD
Sbjct: 4 PSDNSLRIVLVGKTGSGKSATANTILGQKRFVSRIAPHAVTQNCQSDSRRWKERDLLVVD 63
Query: 664 TPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGA 843
TP +F+ K + + +I C QL RFT ++ V+R+K +FG
Sbjct: 64 TPGLFDTKVKLETTCLEISRCVLQSCPGPHAIILVLQLNRFTVEEQETVIRIKAIFGEEV 123
Query: 844 LRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXX 1023
+++ ++LFT ++DL +SL D++A++D L+S+++ECG+R A NN+A E+ Q
Sbjct: 124 MKYMIVLFTRKDDLEDQSLSDFIADSDT-NLKSIIKECGNRCLAINNKAERAERETQVQE 182
Query: 1024 XXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAE 1125
+ G + S+ ++ +A+ + + E
Sbjct: 183 LMGLVETLVQNNGGLYFSHPVYKDAERRLKKQVE 216
>ref|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musculus].
Length = 328
Score = 132 bits (333), Expect = 5e-31
Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 4/247 (1%)
Frame = +1
Query: 472 GSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSI 651
G+ + G LRIVL+GK+G+GKS+TGNSIL + VF S + + +T+ C+ TW G+ +
Sbjct: 22 GNQDQGIPQLRIVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTWDGKEL 81
Query: 652 LVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVF 831
+VVDTP IF+ + D + +I LGR+T ++ A ++ ++F
Sbjct: 82 VVVDTPGIFDTEVPDADTQREITRYVALTSPGPHALLLVVPLGRYTVEEHKATQKILDMF 141
Query: 832 GAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRD 1011
G A R ++L T ++DL +H+Y+ + ++ E +RYC FNNRAS E+ +
Sbjct: 142 GKQARRFMILLLTRKDDLEDTDIHEYLEKAPKF-FQEVMHEFQNRYCLFNNRASGAEKEE 200
Query: 1012 QXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGEGRRHYL----AKVLSHIE 1179
Q + G +N ++ A+ + + E E R L A++ E
Sbjct: 201 QKMQLLTLVQSMVRENGGRCFTNKMYESAECVIQKETLRMQELYREELEREKARIRREYE 260
Query: 1180 KQKQDLR 1200
+Q +DLR
Sbjct: 261 EQIKDLR 267
>ref|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 130 bits (327), Expect = 3e-30
Identities = 65/175 (37%), Positives = 102/175 (58%), Gaps = 3/175 (1%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
L I+L+G+SG+GKSATGN+IL + F S+L QPVT + Q T + ++VVDTPS
Sbjct: 476 LNIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTLDWQDVVVVDTPSFI 535
Query: 679 EAKAQDQE---MYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALR 849
+ +++ + E+I C QLGRFT +D + V +++ F ++
Sbjct: 536 QTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQLGRFTQEDEVVVEQLEASFEENIMK 595
Query: 850 HTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQ 1014
+ ++LFT +EDL LHDY NT N L+ ++++C R CAFNN+ + ++Q Q
Sbjct: 596 YMIVLFTRKEDLGDGDLHDYTNNTKNKALKKILKKCNGRVCAFNNKETGEDQETQ 650
Score = 122 bits (307), Expect = 5e-28
Identities = 67/208 (32%), Positives = 115/208 (55%), Gaps = 3/208 (1%)
Frame = +1
Query: 400 QTHHNKMEGLQKAGEDACATAGGEGSL--NPGSSPLRIVLVGKSGSGKSATGNSILCQHV 573
Q H E GE A+ G EG+ N G+S LR++L+GK G+GKSATGN+IL + V
Sbjct: 14 QAEHRSCEASVGQGERPSASQGQEGNFKQNQGTSTLRLLLLGKQGAGKSATGNTILGKAV 73
Query: 574 FKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXX 753
F+SK VT CQ + + +G+ ++V+DTP +F + + + +++ C
Sbjct: 74 FESKFSDHMVTDRCQSESVSVRGKQVIVIDTPDLFSSLSCSEVRQQNLKQCLELLADDHC 133
Query: 754 XXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLR 933
T +G +T++D + + G A RH +++FT ++L +SL +Y+ + ++
Sbjct: 134 VLLLVTPIGHYTEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYIESKES-- 191
Query: 934 LRSLVQECGS-RYCAFNNRASAQEQRDQ 1014
L+ L++ GS R C FNN+A +++ Q
Sbjct: 192 LKELIKNIGSRRCCTFNNKADKKQRELQ 219
Score = 95.5 bits (236), Expect = 9e-20
Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 1/179 (0%)
Frame = +1
Query: 481 NPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLG-TQPVTRTCQGATGTWQGRSILV 657
+P LR++L+GK G GKSA GNSIL + VFK++ Q VT+ + WQG+ +L+
Sbjct: 279 DPDMPELRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLI 338
Query: 658 VDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGA 837
+D+P I K + + T LG D +K +FG
Sbjct: 339 IDSPEISSWKLDESAVKN-------HTFPGPHAFLLVTPLGSSLKSDDDVFSIIKRIFGE 391
Query: 838 GALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQ 1014
+ T++LFT +ED ++L + D L +L Q+ G RY FN RAS +E++ Q
Sbjct: 392 KFTKFTIVLFTRKEDFEDQALDKVIKEND--ALYNLTQKFGERYAIFNYRASVEEEQSQ 448
>ref|NP_997651.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 130 bits (327), Expect = 3e-30
Identities = 65/175 (37%), Positives = 102/175 (58%), Gaps = 3/175 (1%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
L I+L+G+SG+GKSATGN+IL + F S+L QPVT + Q T + ++VVDTPS
Sbjct: 476 LNIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTLDWQDVVVVDTPSFI 535
Query: 679 EAKAQDQE---MYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALR 849
+ +++ + E+I C QLGRFT +D + V +++ F ++
Sbjct: 536 QTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQLGRFTQEDEVVVEQLEASFEENIMK 595
Query: 850 HTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQ 1014
+ ++LFT +EDL LHDY NT N L+ ++++C R CAFNN+ + ++Q Q
Sbjct: 596 YMIVLFTRKEDLGDGDLHDYTNNTKNKALKKILKKCNGRVCAFNNKETGEDQETQ 650
Score = 122 bits (307), Expect = 5e-28
Identities = 67/208 (32%), Positives = 115/208 (55%), Gaps = 3/208 (1%)
Frame = +1
Query: 400 QTHHNKMEGLQKAGEDACATAGGEGSL--NPGSSPLRIVLVGKSGSGKSATGNSILCQHV 573
Q H E GE A+ G EG+ N G+S LR++L+GK G+GKSATGN+IL + V
Sbjct: 14 QAEHRSCEASVGQGERPSASQGQEGNFKQNQGTSTLRLLLLGKQGAGKSATGNTILGKAV 73
Query: 574 FKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXX 753
F+SK VT CQ + + +G+ ++V+DTP +F + + + +++ C
Sbjct: 74 FESKFSDHMVTDRCQSESVSVRGKQVIVIDTPDLFSSLSCSEVRQQNLKQCLELLADDHC 133
Query: 754 XXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLR 933
T +G +T++D + + G A RH +++FT ++L +SL +Y+ + ++
Sbjct: 134 VLLLVTPIGHYTEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYIESKES-- 191
Query: 934 LRSLVQECGS-RYCAFNNRASAQEQRDQ 1014
L+ L++ GS R C FNN+A +++ Q
Sbjct: 192 LKELIKNIGSRRCCTFNNKADKKQRELQ 219
Score = 95.5 bits (236), Expect = 9e-20
Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 1/179 (0%)
Frame = +1
Query: 481 NPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLG-TQPVTRTCQGATGTWQGRSILV 657
+P LR++L+GK G GKSA GNSIL + VFK++ Q VT+ + WQG+ +L+
Sbjct: 279 DPDMPELRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLI 338
Query: 658 VDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGA 837
+D+P I K + + T LG D +K +FG
Sbjct: 339 IDSPEISSWKLDESAVKN-------HTFPGPHAFLLVTPLGSSLKSDDDVFSIIKRIFGE 391
Query: 838 GALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQ 1014
+ T++LFT +ED ++L + D L +L Q+ G RY FN RAS +E++ Q
Sbjct: 392 KFTKFTIVLFTRKEDFEDQALDKVIKEND--ALYNLTQKFGERYAIFNYRASVEEEQSQ 448
>ref|NP_694815.1| GTPase IMAP family member 6 [Mus musculus].
Length = 305
Score = 127 bits (320), Expect = 2e-29
Identities = 68/172 (39%), Positives = 100/172 (58%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
L+++LVGK+GSGKSATGNSIL + F+SK+ +PVT T Q T ++G+ + V+DTP IF
Sbjct: 104 LQLLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQKGTREFEGKELEVIDTPDIF 163
Query: 679 EAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHTV 858
+ Q + + I C Q+GR+T +D ++E+FG L +T+
Sbjct: 164 SPQNQPEATAKKI--CDLLASPGPHAVLLVIQVGRYTAEDQAVARCLQEIFGNTILAYTI 221
Query: 859 ILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQ 1014
++FT +EDLA SL +Y+ +N L L C R+C FNN+A EQ Q
Sbjct: 222 LVFTRKEDLAEGSLEEYIQENNNKSLDVLDVACERRHCGFNNKAQGDEQEAQ 273
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,560,820
Number of extensions: 1215602
Number of successful extensions: 4759
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4701
Number of HSP's successfully gapped: 15
Length of query: 489
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 384
Effective length of database: 12,463,779
Effective search space: 4786091136
Effective search space used: 4786091136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013391
(1469 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens]. 279 4e-75
Alignment gi|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens]. 278 7e-75
Alignment gi|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens]. 185 8e-47
Alignment gi|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens]. 177 3e-44
Alignment gi|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens]. 162 6e-40
Alignment gi|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens]. 160 3e-39
Alignment gi|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens]. 153 4e-37
Alignment gi|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens]. 132 1e-30
>ref|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens].
Length = 511
Score = 279 bits (714), Expect = 4e-75
Identities = 150/294 (51%), Positives = 185/294 (62%)
Frame = +1
Query: 415 KMEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGT 594
+M G Q+ A E +L+ LRI+LVGK+G GKSATGNSIL Q VF+SKL
Sbjct: 204 RMGGFQRGKYGTMAEGRSEDNLSATPPALRIILVGKTGCGKSATGNSILGQPVFESKLRA 263
Query: 595 QPVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQ 774
Q VTRTCQ TGTW GR +LVVDTPSIFE++A QE+Y++IGDCY Q
Sbjct: 264 QSVTRTCQVKTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQ 323
Query: 775 LGRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQE 954
LGRFT QD +A+ +VKEVFG GA+RH VILFTH+EDL G++L DYVANTDN L+ LV+E
Sbjct: 324 LGRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTDNCSLKDLVRE 383
Query: 955 CGSRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPG 1134
C RYCAFNN S +EQR Q +G+F SNDLF +AQ+LQR A A
Sbjct: 384 CERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQ 443
Query: 1135 EGRRHYLAKVLSHIEKQKQDLRQAXXXXXXXXXXXXKNWIVSHDELCVCLVWCS 1296
E R Y AKV +EK KQ+LR+ K+ ++ H E+ V L+ CS
Sbjct: 444 EDYRQYQAKVEWQVEKHKQELRENESNWAYKALLRVKHLMLLHYEIFVFLLLCS 497
Score = 85.1 bits (209), Expect = 1e-16
Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Frame = +1
Query: 418 MEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQ 597
M G + A ++ E + + S R++LVG++G+GKSATGNSIL Q F S+LG
Sbjct: 1 MGGRKMATDEENVYGLEENAQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGAT 60
Query: 598 PVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEM-YEDIGDCYXXXXXXXXXXXXXTQ 774
VTR C + W + VVDTP IF ++ + E+ G CY TQ
Sbjct: 61 SVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQ 120
Query: 775 LGRFTDQDALAVMRV 819
LGRFT QD AV ++
Sbjct: 121 LGRFTAQDQQAVRQL 135
>ref|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens].
Length = 307
Score = 278 bits (712), Expect = 7e-75
Identities = 150/293 (51%), Positives = 184/293 (62%)
Frame = +1
Query: 418 MEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQ 597
M G Q+ A E +L+ LRI+LVGK+G GKSATGNSIL Q VF+SKL Q
Sbjct: 1 MGGFQRGKYGTMAEGRSEDNLSATPPALRIILVGKTGCGKSATGNSILGQPVFESKLRAQ 60
Query: 598 PVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQL 777
VTRTCQ TGTW GR +LVVDTPSIFE++A QE+Y++IGDCY QL
Sbjct: 61 SVTRTCQVKTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL 120
Query: 778 GRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQEC 957
GRFT QD +A+ +VKEVFG GA+RH VILFTH+EDL G++L DYVANTDN L+ LV+EC
Sbjct: 121 GRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTDNCSLKDLVREC 180
Query: 958 GSRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGE 1137
RYCAFNN S +EQR Q +G+F SNDLF +AQ+LQR A A E
Sbjct: 181 ERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQE 240
Query: 1138 GRRHYLAKVLSHIEKQKQDLRQAXXXXXXXXXXXXKNWIVSHDELCVCLVWCS 1296
R Y AKV +EK KQ+LR+ K+ ++ H E+ V L+ CS
Sbjct: 241 DYRQYQAKVEWQVEKHKQELRENESNWAYKALLRVKHLMLLHYEIFVFLLLCS 293
>ref|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens].
Length = 337
Score = 185 bits (470), Expect = 8e-47
Identities = 96/234 (41%), Positives = 135/234 (57%), Gaps = 2/234 (0%)
Frame = +1
Query: 493 SPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPS 672
S LRI+LVGK+G+GKSA GNSIL + F+SKLG+Q +T+TC + G+W R I+++DTP
Sbjct: 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPD 80
Query: 673 IFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRH 852
+F K + +Y+++ CY TQLGR+T QD A RVKE+FG A+ H
Sbjct: 81 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGH 140
Query: 853 TVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXX 1032
T++LFTH+EDL G SL DY+ ++DN L LV CG R CAFNNRA Q DQ
Sbjct: 141 TIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMD 200
Query: 1033 XXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGEGRR--HYLAKVLSHIEKQK 1188
G +N L+ ++QR + G R + ++ ++E Q+
Sbjct: 201 CIEDLLMEKNGDHYTNGLY---SLIQRSKCGPVGSDERVKEFKQSLIKYMETQR 251
>ref|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens].
Length = 306
Score = 177 bits (448), Expect = 3e-44
Identities = 103/257 (40%), Positives = 144/257 (56%), Gaps = 1/257 (0%)
Frame = +1
Query: 418 MEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQ 597
M G + A ++ E + + S R++LVG++G+GKSATGNSIL Q F S+LG
Sbjct: 1 MGGRKMATDEENVYGLEENAQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGAT 60
Query: 598 PVTRTCQGATGTWQGRSILVVDTPSIFEAKAQDQEM-YEDIGDCYXXXXXXXXXXXXXTQ 774
VTR C + W + VVDTP IF ++ + E+ G CY TQ
Sbjct: 61 SVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQ 120
Query: 775 LGRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQE 954
LGRFT QD AV +V+++FG L+ VI+FT +EDLAG SLHDYV+NT+N LR LV E
Sbjct: 121 LGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 180
Query: 955 CGSRYCAFNNRASAQEQRDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPG 1134
CG R CAF+NRA+ +EQ Q H+GA SN+++ AQ+L+ P
Sbjct: 181 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWA---GPE 237
Query: 1135 EGRRHYLAKVLSHIEKQ 1185
E R +V + ++++
Sbjct: 238 ERLRRVAERVAARVQRR 254
>ref|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens].
Length = 300
Score = 162 bits (411), Expect = 6e-40
Identities = 86/211 (40%), Positives = 128/211 (60%), Gaps = 4/211 (1%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
LRIVLVGK+GSGKSAT N+IL + +F S++ Q VT+ CQ A+ WQGR +LVVDTP +F
Sbjct: 9 LRIVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQGRDLLVVDTPGLF 68
Query: 679 EAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHTV 858
+ K ++I C LGR+T+++ V +K VFG A++H V
Sbjct: 69 DTKESLDTTCKEISRCIISSCPGPHAIVLVLLLGRYTEEEQKTVALIKAVFGKSAMKHMV 128
Query: 859 ILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNN--RASAQEQRDQXXXXXX 1032
ILFT +E+L G+S HD++A+ D + L+S+V+ECG+R CAF+N + S E+ Q
Sbjct: 129 ILFTRKEELEGQSFHDFIADAD-VGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQELVE 187
Query: 1033 XXXXXXXXHQGAFLSNDLF--FEAQMLQRGE 1119
++GA+ S+D++ E ++ QR E
Sbjct: 188 LIEKMVQCNEGAYFSDDIYKDTEERLKQREE 218
>ref|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens].
Length = 292
Score = 160 bits (405), Expect = 3e-39
Identities = 96/245 (39%), Positives = 134/245 (54%), Gaps = 13/245 (5%)
Frame = +1
Query: 499 LRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPSIF 678
LR++L+GK+GSGKSATGNSIL + VF+SKL T+PVT+T Q + W G+ + V+DTP+I
Sbjct: 41 LRLILMGKTGSGKSATGNSILGRDVFESKLSTRPVTKTSQRRSREWAGKELEVIDTPNIL 100
Query: 679 EAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHTV 858
+ E+ + I TQLGRFTD+D V R++EVFG G L HT+
Sbjct: 101 SPQVSP-EVADAICQAIVLSAPGPHAVLLVTQLGRFTDEDQQVVRRLQEVFGVGVLGHTI 159
Query: 859 ILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQXXXXXXXX 1038
++FT +EDLAG SL DYV T+N L L R+C FNNRA +EQ Q
Sbjct: 160 LVFTRKEDLAGGSLEDYVRETNNQALAWLDVTLARRHCGFNNRAQGEEQEAQLRELMEKV 219
Query: 1039 XXXXXXHQGAFLSNDLF------FEAQMLQ-------RGEAEAPGEGRRHYLAKVLSHIE 1179
++G + SN + F + LQ +G + PGE + LS I+
Sbjct: 220 EAIMWENEGDYYSNKAYQYTQQNFRLKELQERQVSQGQGSEDVPGE---ESWLEGLSQIQ 276
Query: 1180 KQKQD 1194
K+ ++
Sbjct: 277 KESEE 281
>ref|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens].
Length = 665
Score = 153 bits (386), Expect = 4e-37
Identities = 80/213 (37%), Positives = 121/213 (56%), Gaps = 3/213 (1%)
Frame = +1
Query: 385 YQSLGQTHHNKMEGLQKAGEDACATAGGEGSLNPGSSPLRIVLVGKSGSGKSATGNSILC 564
Y++ G+ + + L + E G + + L IVLVG+SG+GKSATGNSIL
Sbjct: 401 YRATGEEEQRQADELLEKIESMVHQNGNKHCVFREKETLNIVLVGRSGTGKSATGNSILG 460
Query: 565 QHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPS---IFEAKAQDQEMYEDIGDCYXX 735
VF S+L QPVT+T Q TW G+ ++VVDTPS + + + + E++ C
Sbjct: 461 SLVFTSRLRAQPVTKTSQSGRRTWDGQEVVVVDTPSFNQMLDVEKDPSRLEEEVKRCLSC 520
Query: 736 XXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRHTVILFTHREDLAGESLHDYVA 915
QLGRFT++D AV +++ +FGA ++ ++LFT +EDL +L D++
Sbjct: 521 CEKGDTFFVLVFQLGRFTEEDKTAVAKLEAIFGADFTKYAIMLFTRKEDLGAGNLEDFMK 580
Query: 916 NTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQ 1014
N+DN LR + ++CG R CAFNN+ + Q Q Q
Sbjct: 581 NSDNKALRRIFKKCGRRVCAFNNKETGQAQETQ 613
Score = 125 bits (314), Expect = 1e-28
Identities = 64/172 (37%), Positives = 101/172 (58%)
Frame = +1
Query: 493 SPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVVDTPS 672
S LR++L+GK SGKSATGN+IL +HVFKSK Q V + CQ + + R ++V+DTP
Sbjct: 9 SELRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVVVIDTPD 68
Query: 673 IFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAGALRH 852
+F + A ++ +I C +G FT +D +++VFGA A RH
Sbjct: 69 LFSSIACAEDKQRNIQHCLELSAPSLHALLLVIAIGHFTREDEETAKGIQQVFGAEARRH 128
Query: 853 TVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQR 1008
+I+FT ++DL + L D++ N L+ LVQ+ RYC FNN+ ++++++
Sbjct: 129 IIIVFTRKDDLGDDLLQDFIEK--NKPLKQLVQDYEGRYCIFNNKTNSKDEQ 178
Score = 107 bits (268), Expect = 2e-23
Identities = 60/178 (33%), Positives = 96/178 (53%)
Frame = +1
Query: 481 NPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGRSILVV 660
NPG+S L ++LVGK G+GKSA GNSIL + F++ Q VT++ + +W+ + + ++
Sbjct: 242 NPGTSELTVLLVGKRGAGKSAAGNSILGRQAFQTGFSEQSVTQSFLSESRSWRKKKVSII 301
Query: 661 DTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKEVFGAG 840
D P I K D E+ + I T LG +T D + ++ FG
Sbjct: 302 DAPDISSLKNIDSEVRKHI-------CTGPHAFLLVTPLGFYTKNDEAVLSTIQNNFGEK 354
Query: 841 ALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQRDQ 1014
+ +IL T +EDL + L ++ N+ N L L+Q+C +RY AFN RA+ +E++ Q
Sbjct: 355 FFEYMIILLTRKEDLGDQDLDTFLRNS-NKALYGLIQKCKNRYSAFNYRATGEEEQRQ 411
>ref|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens].
Length = 329
Score = 132 bits (331), Expect = 1e-30
Identities = 74/243 (30%), Positives = 127/243 (52%)
Frame = +1
Query: 466 GEGSLNPGSSPLRIVLVGKSGSGKSATGNSILCQHVFKSKLGTQPVTRTCQGATGTWQGR 645
G G P +S LRIVLVGK+G+GKSATGNSIL + VF S + +T+ C+ + +W+
Sbjct: 20 GPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET 79
Query: 646 SILVVDTPSIFEAKAQDQEMYEDIGDCYXXXXXXXXXXXXXTQLGRFTDQDALAVMRVKE 825
++VVDTP IF+ + + E ++I C LGR+T+++ A ++ +
Sbjct: 80 ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILK 139
Query: 826 VFGAGALRHTVILFTHREDLAGESLHDYVANTDNLRLRSLVQECGSRYCAFNNRASAQEQ 1005
+FG A +++FT ++DL +LHDY+ ++ L+ G RYCA NN+A+ EQ
Sbjct: 140 MFGERARSFMILIFTRKDDLGDTNLHDYLREAPE-DIQDLMDIFGDRYCALNNKATGAEQ 198
Query: 1006 RDQXXXXXXXXXXXXXXHQGAFLSNDLFFEAQMLQRGEAEAPGEGRRHYLAKVLSHIEKQ 1185
Q ++ +N ++ A+ + + +A E R L + + I ++
Sbjct: 199 EAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQAMQELHRVELEREKARIREE 258
Query: 1186 KQD 1194
++
Sbjct: 259 YEE 261
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,951,570
Number of extensions: 1453373
Number of successful extensions: 5504
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5449
Number of HSP's successfully gapped: 11
Length of query: 489
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 382
Effective length of database: 14,770,016
Effective search space: 5642146112
Effective search space used: 5642146112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013391
(1469 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 458 e-126
>Sscrofa_Chr18
|| Length = 61220071
Score = 458 bits (231), Expect = e-126
Identities = 231/231 (100%)
Strand = Plus / Plus
Query: 1 ggatgtgtccttgggttctgcggccgtgcaagttcacctaggtgcagaaacctacccaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6671960 ggatgtgtccttgggttctgcggccgtgcaagttcacctaggtgcagaaacctacccaac 6672019
Query: 61 tttattttcccctcacgtccaagcaagggcgacctgaggacaggccaatggacagagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6672020 tttattttcccctcacgtccaagcaagggcgacctgaggacaggccaatggacagagaaa 6672079
Query: 121 taagaggcggccagagccgtacaaagtctcatgcaagatgcccgccctgagttcagcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6672080 taagaggcggccagagccgtacaaagtctcatgcaagatgcccgccctgagttcagcttt 6672139
Query: 181 ggctgcaggtctctagaattacatacacgaagctgtctttgtgcagaagag 231
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6672140 ggctgcaggtctctagaattacatacacgaagctgtctttgtgcagaagag 6672190
Score = 188 bits (95), Expect = 6e-45
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 230 agagactagaagccaatgagagaggctgccaaggagcggagggaggatagtttcaagact 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6672593 agagactagaagccaatgagagaggctgccaaggagcggagggaggatagtttcaagact 6672652
Query: 290 gcgcgtgggacttgcgagacttttccaggaccgaccagg 328
||||||||||||||| |||||||||||||||||||||||
Sbjct: 6672653 gcgcgtgggacttgcaagacttttccaggaccgaccagg 6672691
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 325 caggctggactcagagggagcagcagtttcagcttctcattcttggaggagatggcctgc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6674176 caggctggactcagagggagcagcagtttcagcttctcattcttggaggagatggcctgc 6674235
Query: 385 taccagtcgcttggccaaacccatcat 411
|||||||||||||||||||||||||||
Sbjct: 6674236 taccagtcgcttggccaaacccatcat 6674262
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 412 aacaaaatggaagggcttcagaaggctggggaagacgcatgcgccacag 460
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6676195 aacaaaatggaagggcttcagaaggctggggaagacgcatgcgccacag 6676243
Score = 60.0 bits (30), Expect = 4e-06
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 723 ctgctacctgctcttggcgccggggccccacgtgctgctgctggtgacccagctggggcg 782
||||||||||||| || || |||||||||| ||||| ||||||||||||||||| ||
Sbjct: 6874277 ctgctacctgctcgcagcccccgggccccacgccctgctcctggtgacccagctgggccg 6874336
Query: 783 cttcac 788
||||||
Sbjct: 6874337 cttcac 6874342
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,009,175
Number of extensions: 261
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 5
Length of query: 1469
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1448
Effective length of database: 2,808,413,156
Effective search space: 4066582249888
Effective search space used: 4066582249888
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)