Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013405
(1069 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069034.1| protein FRG1 [Bos taurus]. 470 e-132
>ref|NP_001069034.1| protein FRG1 [Bos taurus].
Length = 258
Score = 470 bits (1209), Expect = e-132
Identities = 235/257 (91%), Positives = 236/257 (91%)
Frame = +2
Query: 203 MAEYSYVKSTKLVLKGTXXXXXXXXXXXXXXXXXXXXXTQLDIVGIWWTVTNFGEISGTI 382
MAEYSYVKSTKLVLKGT TQLDIVGIWWTVTNFGEISGTI
Sbjct: 1 MAEYSYVKSTKLVLKGTKAKSKKKKSKEKKRKREEDEETQLDIVGIWWTVTNFGEISGTI 60
Query: 383 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 562
AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN
Sbjct: 61 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 120
Query: 563 SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 742
SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI
Sbjct: 121 SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 180
Query: 743 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFL 922
RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLK+SKEDSKILKKARKDGFL
Sbjct: 181 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKISKEDSKILKKARKDGFL 240
Query: 923 HETLLDRRAKLKADRYC 973
HETLLDRRAKLKADRYC
Sbjct: 241 HETLLDRRAKLKADRYC 257
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,675,945
Number of extensions: 777954
Number of successful extensions: 2431
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2424
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013405
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013405
(1069 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540014.2| PREDICTED: similar to FRG1 protein (FSHD region... 470 e-132
>ref|XP_540014.2| PREDICTED: similar to FRG1 protein (FSHD region gene 1 protein)
[Canis familiaris].
Length = 258
Score = 470 bits (1209), Expect = e-132
Identities = 235/257 (91%), Positives = 236/257 (91%)
Frame = +2
Query: 203 MAEYSYVKSTKLVLKGTXXXXXXXXXXXXXXXXXXXXXTQLDIVGIWWTVTNFGEISGTI 382
MAEYSYVKSTKLVLKGT TQLDIVGIWWTVTNFGEISGTI
Sbjct: 1 MAEYSYVKSTKLVLKGTKAKSKKKKSKEKKRKREEDEETQLDIVGIWWTVTNFGEISGTI 60
Query: 383 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 562
AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN
Sbjct: 61 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 120
Query: 563 SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 742
SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI
Sbjct: 121 SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 180
Query: 743 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFL 922
RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLK+SKEDSKILKKARKDGFL
Sbjct: 181 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKISKEDSKILKKARKDGFL 240
Query: 923 HETLLDRRAKLKADRYC 973
HETLLDRRAKLKADRYC
Sbjct: 241 HETLLDRRAKLKADRYC 257
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,997,179
Number of extensions: 756152
Number of successful extensions: 2542
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2535
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013405
(1069 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134242.1| PREDICTED: protein FRG1-like isoform 2 [Sus ... 470 e-133
Alignment gi|XP_003134241.1| PREDICTED: protein FRG1-like isoform 1 [Sus ... 470 e-133
>ref|XP_003134242.1| PREDICTED: protein FRG1-like isoform 2 [Sus scrofa].
Length = 258
Score = 470 bits (1210), Expect = e-133
Identities = 236/257 (91%), Positives = 236/257 (91%)
Frame = +2
Query: 203 MAEYSYVKSTKLVLKGTXXXXXXXXXXXXXXXXXXXXXTQLDIVGIWWTVTNFGEISGTI 382
MAEYSYVKSTKLVLKGT TQLDIVGIWWTVTNFGEISGTI
Sbjct: 1 MAEYSYVKSTKLVLKGTKTKSKKKKSKEKKRKREEDEETQLDIVGIWWTVTNFGEISGTI 60
Query: 383 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 562
AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN
Sbjct: 61 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 120
Query: 563 SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 742
SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI
Sbjct: 121 SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 180
Query: 743 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFL 922
RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFL
Sbjct: 181 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFL 240
Query: 923 HETLLDRRAKLKADRYC 973
HETLLDRRAKLKADRYC
Sbjct: 241 HETLLDRRAKLKADRYC 257
>ref|XP_003134241.1| PREDICTED: protein FRG1-like isoform 1 [Sus scrofa].
Length = 258
Score = 470 bits (1210), Expect = e-133
Identities = 236/257 (91%), Positives = 236/257 (91%)
Frame = +2
Query: 203 MAEYSYVKSTKLVLKGTXXXXXXXXXXXXXXXXXXXXXTQLDIVGIWWTVTNFGEISGTI 382
MAEYSYVKSTKLVLKGT TQLDIVGIWWTVTNFGEISGTI
Sbjct: 1 MAEYSYVKSTKLVLKGTKTKSKKKKSKEKKRKREEDEETQLDIVGIWWTVTNFGEISGTI 60
Query: 383 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 562
AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN
Sbjct: 61 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 120
Query: 563 SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 742
SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI
Sbjct: 121 SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 180
Query: 743 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFL 922
RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFL
Sbjct: 181 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFL 240
Query: 923 HETLLDRRAKLKADRYC 973
HETLLDRRAKLKADRYC
Sbjct: 241 HETLLDRRAKLKADRYC 257
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,495,391
Number of extensions: 577107
Number of successful extensions: 1498
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1495
Number of HSP's successfully gapped: 2
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013405
(1069 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038550.2| protein FRG1 [Mus musculus]. 462 e-130
>ref|NP_038550.2| protein FRG1 [Mus musculus].
Length = 258
Score = 462 bits (1189), Expect = e-130
Identities = 230/257 (89%), Positives = 235/257 (91%)
Frame = +2
Query: 203 MAEYSYVKSTKLVLKGTXXXXXXXXXXXXXXXXXXXXXTQLDIVGIWWTVTNFGEISGTI 382
MAEYSYVKSTKLVLKGT TQLDIVGIWWTV+NFGEISGTI
Sbjct: 1 MAEYSYVKSTKLVLKGTKAKSKKKKSKDKKRKREEDEETQLDIVGIWWTVSNFGEISGTI 60
Query: 383 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 562
AIEMDKG YIHALDNGLFTLGAPH+EVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN
Sbjct: 61 AIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 120
Query: 563 SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 742
SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAK+KTAGEEEMIKI
Sbjct: 121 SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKNKTAGEEEMIKI 180
Query: 743 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFL 922
RSCAERETKKKDDIPEEDKG+VKQCEINYVKKFQSFQDHKLK+SKEDSKILKKARKDGFL
Sbjct: 181 RSCAERETKKKDDIPEEDKGSVKQCEINYVKKFQSFQDHKLKISKEDSKILKKARKDGFL 240
Query: 923 HETLLDRRAKLKADRYC 973
HETLLDRRAKLKADRYC
Sbjct: 241 HETLLDRRAKLKADRYC 257
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,474,300
Number of extensions: 633557
Number of successful extensions: 2024
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2013
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013405
(1069 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004468.1| protein FRG1 [Homo sapiens]. 468 e-132
Alignment gi|XP_002343932.3| PREDICTED: protein FRG1-like isoform 1 [Homo... 257 1e-68
Alignment gi|XP_003403893.1| PREDICTED: protein FRG1B-like [Homo sapiens]. 254 1e-67
Alignment gi|XP_003403892.1| PREDICTED: protein FRG1B-like [Homo sapiens]. 212 4e-55
Alignment gi|XP_003403891.1| PREDICTED: protein FRG1B-like [Homo sapiens]. 212 4e-55
Alignment gi|XP_003403890.1| PREDICTED: protein FRG1B-like [Homo sapiens]. 212 4e-55
Alignment gi|XP_003403889.1| PREDICTED: protein FRG1B-like [Homo sapiens]. 212 4e-55
Alignment gi|XP_003403888.1| PREDICTED: protein FRG1B-like [Homo sapiens]. 212 4e-55
Alignment gi|XP_003403887.1| PREDICTED: protein FRG1B-like [Homo sapiens]. 212 4e-55
Alignment gi|XP_001721838.2| PREDICTED: protein FRG1B-like isoform 2 [Hom... 194 9e-50
>ref|NP_004468.1| protein FRG1 [Homo sapiens].
Length = 258
Score = 468 bits (1204), Expect = e-132
Identities = 234/257 (91%), Positives = 236/257 (91%)
Frame = +2
Query: 203 MAEYSYVKSTKLVLKGTXXXXXXXXXXXXXXXXXXXXXTQLDIVGIWWTVTNFGEISGTI 382
MAEYSYVKSTKLVLKGT TQLDIVGIWWTVTNFGEISGTI
Sbjct: 1 MAEYSYVKSTKLVLKGTKTKSKKKKSKDKKRKREEDEETQLDIVGIWWTVTNFGEISGTI 60
Query: 383 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 562
AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN
Sbjct: 61 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 120
Query: 563 SDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 742
SDGLVVGRSDAIGPREQWEPVFQ+GKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI
Sbjct: 121 SDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 180
Query: 743 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFL 922
RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLK+SKEDSKILKKARKDGFL
Sbjct: 181 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKISKEDSKILKKARKDGFL 240
Query: 923 HETLLDRRAKLKADRYC 973
HETLLDRRAKLKADRYC
Sbjct: 241 HETLLDRRAKLKADRYC 257
>ref|XP_002343932.3| PREDICTED: protein FRG1-like isoform 1 [Homo sapiens].
Length = 202
Score = 257 bits (656), Expect = 1e-68
Identities = 127/148 (85%), Positives = 135/148 (91%)
Frame = +2
Query: 392 MDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGINSDG 571
MD+GTYIHAL+NGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRI LKSGYGKYLGINSD
Sbjct: 1 MDEGTYIHALNNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRITLKSGYGKYLGINSDE 60
Query: 572 LVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSC 751
LVVG SDAIGPREQWEPVF++GKMA ASNS FIRC+ AKSKTAGEEEMIKIRSC
Sbjct: 61 LVVGHSDAIGPREQWEPVFKNGKMAFSASNSRFIRCS------AKSKTAGEEEMIKIRSC 114
Query: 752 AERETKKKDDIPEEDKGNVKQCEINYVK 835
AERETK+KDDIPEEDKGN+KQCEINY +
Sbjct: 115 AERETKEKDDIPEEDKGNIKQCEINYAQ 142
>ref|XP_003403893.1| PREDICTED: protein FRG1B-like [Homo sapiens].
Length = 155
Score = 254 bits (648), Expect = 1e-67
Identities = 125/140 (89%), Positives = 130/140 (92%)
Frame = +2
Query: 320 QLDIVGIWWTVTNFGEISGTIAIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTA 499
Q +GIWWTVTNFGEISGTIAIEMD+GTYIHALDNGLFTLGAPHKEVDEGPSPPEQF+A
Sbjct: 5 QFYFLGIWWTVTNFGEISGTIAIEMDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSA 64
Query: 500 VKLSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRC 679
VKLSDSRI LKSGYGKYLGINSD LVVGRSDAIGPREQWEPVF+ GKMAL SNSCFIR
Sbjct: 65 VKLSDSRITLKSGYGKYLGINSDELVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRY 124
Query: 680 NEAGDIEAKSKTAGEEEMIK 739
+EA DIEAKSKTAGEEEMIK
Sbjct: 125 SEAEDIEAKSKTAGEEEMIK 144
>ref|XP_003403892.1| PREDICTED: protein FRG1B-like [Homo sapiens].
Length = 127
Score = 212 bits (540), Expect = 4e-55
Identities = 105/116 (90%), Positives = 109/116 (93%)
Frame = +2
Query: 392 MDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGINSDG 571
MD+GTYIHALDNGLFTLGAPHKEVDEGPSPPEQF+AVKLSDSRI LKSGYGKYLGINSD
Sbjct: 1 MDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVKLSDSRITLKSGYGKYLGINSDE 60
Query: 572 LVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIK 739
LVVGRSDAIGPREQWEPVF+ GKMAL SNSCFIR +EA DIEAKSKTAGEEEMIK
Sbjct: 61 LVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIK 116
>ref|XP_003403891.1| PREDICTED: protein FRG1B-like [Homo sapiens].
Length = 127
Score = 212 bits (540), Expect = 4e-55
Identities = 105/116 (90%), Positives = 109/116 (93%)
Frame = +2
Query: 392 MDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGINSDG 571
MD+GTYIHALDNGLFTLGAPHKEVDEGPSPPEQF+AVKLSDSRI LKSGYGKYLGINSD
Sbjct: 1 MDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVKLSDSRITLKSGYGKYLGINSDE 60
Query: 572 LVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIK 739
LVVGRSDAIGPREQWEPVF+ GKMAL SNSCFIR +EA DIEAKSKTAGEEEMIK
Sbjct: 61 LVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIK 116
>ref|XP_003403890.1| PREDICTED: protein FRG1B-like [Homo sapiens].
Length = 163
Score = 212 bits (540), Expect = 4e-55
Identities = 105/116 (90%), Positives = 109/116 (93%)
Frame = +2
Query: 392 MDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGINSDG 571
MD+GTYIHALDNGLFTLGAPHKEVDEGPSPPEQF+AVKLSDSRI LKSGYGKYLGINSD
Sbjct: 1 MDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVKLSDSRITLKSGYGKYLGINSDE 60
Query: 572 LVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIK 739
LVVGRSDAIGPREQWEPVF+ GKMAL SNSCFIR +EA DIEAKSKTAGEEEMIK
Sbjct: 61 LVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIK 116
>ref|XP_003403889.1| PREDICTED: protein FRG1B-like [Homo sapiens].
Length = 127
Score = 212 bits (540), Expect = 4e-55
Identities = 105/116 (90%), Positives = 109/116 (93%)
Frame = +2
Query: 392 MDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGINSDG 571
MD+GTYIHALDNGLFTLGAPHKEVDEGPSPPEQF+AVKLSDSRI LKSGYGKYLGINSD
Sbjct: 1 MDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVKLSDSRITLKSGYGKYLGINSDE 60
Query: 572 LVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIK 739
LVVGRSDAIGPREQWEPVF+ GKMAL SNSCFIR +EA DIEAKSKTAGEEEMIK
Sbjct: 61 LVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIK 116
>ref|XP_003403888.1| PREDICTED: protein FRG1B-like [Homo sapiens].
Length = 127
Score = 212 bits (540), Expect = 4e-55
Identities = 105/116 (90%), Positives = 109/116 (93%)
Frame = +2
Query: 392 MDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGINSDG 571
MD+GTYIHALDNGLFTLGAPHKEVDEGPSPPEQF+AVKLSDSRI LKSGYGKYLGINSD
Sbjct: 1 MDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVKLSDSRITLKSGYGKYLGINSDE 60
Query: 572 LVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIK 739
LVVGRSDAIGPREQWEPVF+ GKMAL SNSCFIR +EA DIEAKSKTAGEEEMIK
Sbjct: 61 LVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIK 116
>ref|XP_003403887.1| PREDICTED: protein FRG1B-like [Homo sapiens].
Length = 127
Score = 212 bits (540), Expect = 4e-55
Identities = 105/116 (90%), Positives = 109/116 (93%)
Frame = +2
Query: 392 MDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGINSDG 571
MD+GTYIHALDNGLFTLGAPHKEVDEGPSPPEQF+AVKLSDSRI LKSGYGKYLGINSD
Sbjct: 1 MDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVKLSDSRITLKSGYGKYLGINSDE 60
Query: 572 LVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIK 739
LVVGRSDAIGPREQWEPVF+ GKMAL SNSCFIR +EA DIEAKSKTAGEEEMIK
Sbjct: 61 LVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIK 116
>ref|XP_001721838.2| PREDICTED: protein FRG1B-like isoform 2 [Homo sapiens].
Length = 124
Score = 194 bits (494), Expect = 9e-50
Identities = 99/110 (90%), Positives = 103/110 (93%)
Frame = +2
Query: 614 WEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEE 793
WE + GKMALLAS+SCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP E
Sbjct: 16 WELHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP-E 74
Query: 794 DKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFLHETLLDR 943
DKGNVKQ EINYVKKFQSFQDHK K+SKEDSKILKKA+KDGFLHETLLDR
Sbjct: 75 DKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQKDGFLHETLLDR 124
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,405,873
Number of extensions: 748039
Number of successful extensions: 2694
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2690
Number of HSP's successfully gapped: 11
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013405
(1069 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 462 e-127
>Sscrofa_Chr17
|| Length = 69701581
Score = 462 bits (233), Expect = e-127
Identities = 249/253 (98%), Gaps = 1/253 (0%)
Strand = Plus / Plus
Query: 1 tttactggggacacaatcttcaggtgaaagggccagggattcggaagagacattcacccc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6401240 tttacttgggacacaatcttcaggtgaaagggccagggattcggaagagacattcacccc 6401299
Query: 61 tggtgttggcgtaagttctcagggagtctgtactcggtactcagtctccactttcgagtc 120
|||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6401300 tggtgttg-cgtaagttctgagggagtctgtactcggtactcagtcttcactttcgagtc 6401358
Query: 121 cctctcgcctgctgctgctccggttcacgtattttgccctgagccagcttccacctctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6401359 cctctcgcctgctgctgctccggttcacgtattttgccctgagccagcttccacctctta 6401418
Query: 181 gcaccgaggcgttcccacggccatggccgagtactcctacgtgaagtccaccaaactcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6401419 gcaccgaggcgttcccacggccatggccgagtactcctacgtgaagtccaccaaactcgt 6401478
Query: 241 gctcaagggaacc 253
|||||||||||||
Sbjct: 6401479 gctcaagggaacc 6401491
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 335 ggaatctggtggacagtgacaaactttggtgaaatttcaggaaccatagcaattgaaatg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6408922 ggaatctggtggacagtgacaaactttggtgaaatttcaggaaccatagcaattgaaatg 6408981
Query: 395 gataaaggaacctacatacatgcacttgacaatggactttttacactgggagcaccacat 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6408982 gataaaggaacctacatacatgcacttgacaatggactttttacactgggagcaccacat 6409041
Query: 455 aaagaag 461
|||||||
Sbjct: 6409042 aaagaag 6409048
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 518 agaattgccctgaaatctggctatggaaaataccttggtataaattcagatggacttgtt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6410771 agaattgccctgaaatctggctatggaaaataccttggtataaattcagatggacttgtt 6410830
Query: 578 gttgggcgttcagatgcaattggaccaagagaacaatgggaaccagtctttcaagatg 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6410831 gttgggcgttcagatgcaattggaccaagagaacaatgggaaccagtctttcaagatg 6410888
Score = 214 bits (108), Expect = 7e-53
Identities = 111/112 (99%)
Strand = Plus / Plus
Query: 832 aaagaaattccagagcttccaagaccacaaacttaaagtaagtaaagaagacagtaaaat 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6419330 aaagaaattccagagcttccaagaccacaaacttaaagtaagtaaagaagacagtaaaat 6419389
Query: 892 tcttaaaaaggcccggaaagatgggtttttgcatgaaacacttctggacagg 943
||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6419390 tcttaaaaaggcccggaaagatgggtttttgcatgaaacgcttctggacagg 6419441
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 635 gggaaaatggctttactggcctcaaatagctgctttattagatgcaatgaagcaggagat 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6416637 gggaaaatggctttactggcctcaaatagctgctttattagatgcaatgaagcaggagat 6416696
Query: 695 atagaagcaaaaagtaaaacagcaggagaagaagaaatgataaag 739
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6416697 atagaagcaaaaagtaaaacagcaggagaagaagaaatgataaag 6416741
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 738 agattagatcctgtgccgaaagagaaactaagaaaaaagatgatattccagaagaagaca 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6418724 agattagatcctgtgccgaaagagaaactaagaaaaaagatgatattccagaagaagaca 6418783
Query: 798 aaggaaatgttaaacagtgtgaaatcaattatgt 831
||||||||||||||||||||||||||||||||||
Sbjct: 6418784 aaggaaatgttaaacagtgtgaaatcaattatgt 6418817
Score = 151 bits (76), Expect = 9e-34
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 939 acaggagagccaaattgaaagctgatagatactgcaagtgatcagaattttcgttttact 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6420752 acaggagagccaaattgaaagctgatagatactgcaagtgatcagaattttcgttttact 6420811
Query: 999 cctctttttgcttttttctg 1018
|||||||||| |||||||||
Sbjct: 6420812 cctctttttgtttttttctg 6420831
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 460 agttgatgagggtcctagtcctccagagcagtttacagctgtcaaattgtctgattccag 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6409826 agttgatgagggtcctagtcctccagagcagtttacagctgtcaaattgtctgattccag 6409885
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,138,200
Number of extensions: 306
Number of successful extensions: 306
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 8
Length of query: 1069
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1048
Effective length of database: 2,808,413,156
Effective search space: 2943216987488
Effective search space used: 2943216987488
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)