Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013407
(1171 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534961.2| PREDICTED: similar to protein phosphatase 1, re... 610 e-175
Alignment gi|XP_539996.2| PREDICTED: similar to protein phosphatase 1, re... 231 1e-60
Alignment gi|XP_543078.1| PREDICTED: similar to Protein phosphatase 1, re... 89 8e-18
Alignment gi|XP_539528.2| PREDICTED: similar to protein phosphatase 1 gly... 83 4e-16
Alignment gi|XP_547732.2| PREDICTED: similar to Protein phosphatase 1, re... 68 1e-11
>ref|XP_534961.2| PREDICTED: similar to protein phosphatase 1, regulatory (inhibitor)
subunit 5 [Canis familiaris].
Length = 435
Score = 610 bits (1574), Expect = e-175
Identities = 295/343 (86%), Positives = 312/343 (90%)
Frame = +3
Query: 12 SCRPVGTAGSLVRNYAGSGVPPPLCLMSCTRMIQVLDPRPLTSSVMPVDVAMRLCLAHSP 191
SCR A S R AG PPP MSCTRMIQVLDPRPLT+SVMPVDVAMRLCLAHSP
Sbjct: 96 SCR-TEVAASWARTCAGP--PPPGGPMSCTRMIQVLDPRPLTNSVMPVDVAMRLCLAHSP 152
Query: 192 PLKSFLGPYDDFQRRNFVNKLKPLKPCLNMKQEAKSQNDWKPSHNQAKKRVVFADSKGLS 371
PLKSFLGPYDD QRRNFVNKLKPLK CLN+KQEAKSQN+WK SH+QAKKRVVFADSKGLS
Sbjct: 153 PLKSFLGPYDDLQRRNFVNKLKPLKSCLNIKQEAKSQNEWKQSHDQAKKRVVFADSKGLS 212
Query: 372 LTAIHVFSDLPEEPVWDLQFDLLDLNDISSGLKRHEEKNLILDFPQPSADYLSFRNHFQK 551
LTAIHVFSDLPEEP WDLQFDLLDLNDISSGLK HEEKNLILDFPQPS DYLSFRNHFQK
Sbjct: 213 LTAIHVFSDLPEEPAWDLQFDLLDLNDISSGLKLHEEKNLILDFPQPSTDYLSFRNHFQK 272
Query: 552 NFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESD 731
NFVCLENCSLQER VTGTVKVKN+SFEKKVQIRITFDTW++YTDVDC YMKN+YG S+SD
Sbjct: 273 NFVCLENCSLQERTVTGTVKVKNMSFEKKVQIRITFDTWKSYTDVDCNYMKNVYGASDSD 332
Query: 732 TFSFAIDLPAVIPTKEKIEFCISYHANGQVFWDNNEGQNYRIVHAQWKPDGVQTQMASQD 911
TFSFA+DLP+VIPT+EKIEFCISYHANGQVFWDNNEGQNYRIVH QWKPDGVQTQMASQD
Sbjct: 333 TFSFAVDLPSVIPTEEKIEFCISYHANGQVFWDNNEGQNYRIVHVQWKPDGVQTQMASQD 392
Query: 912 SAYHRAPPKAELESPVFGSPRLASGLFPEWQSWGRVENLASYR 1040
+H+ PPK E E+ +FGSPRLASGLFPEWQSWGR+ENLASYR
Sbjct: 393 CVFHQVPPKTESETSIFGSPRLASGLFPEWQSWGRMENLASYR 435
>ref|XP_539996.2| PREDICTED: similar to protein phosphatase 1, regulatory (inhibitor)
subunit 3B [Canis familiaris].
Length = 285
Score = 231 bits (588), Expect = 1e-60
Identities = 125/301 (41%), Positives = 187/301 (62%), Gaps = 3/301 (0%)
Frame = +3
Query: 144 VMPVDVAMRL-CLAHSPPLKSFLGPYDDFQRRNFVNKLKPLKPCLNMKQEAKSQNDWKPS 320
+M VD+ R C+A P L+ + F + +PL+PC+ + + ++ P+
Sbjct: 1 MMAVDIEYRYSCMA--PSLRR-----ERFTFKTSPKPSEPLRPCIQLSSKNEASGVVAPT 53
Query: 321 --HNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLNDISSGLKRHEEKNLI 494
+ KKRV FAD++GL+LT + VFS+ +EP+ D+ F++ +L D L E ++ +
Sbjct: 54 VQEKKVKKRVSFADNQGLALTMVKVFSEF-DEPL-DIPFNITELLDNLVSLTSPESESFV 111
Query: 495 LDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDTWQN 674
LDF QPSADYL FRN Q + VCLENC L++R + GTVKV+N++FEK V+IR+TFDTW++
Sbjct: 112 LDFTQPSADYLDFRNRLQADHVCLENCVLKDRAIAGTVKVQNLAFEKMVKIRMTFDTWKS 171
Query: 675 YTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIEFCISYHANGQVFWDNNEGQNYR 854
+TD C Y+K+ Y GS+ DTFSF I LP I + E++EF + + +GQ +WD+N+G+NYR
Sbjct: 172 FTDFPCRYVKDTYAGSDRDTFSFDISLPEKIQSYERMEFAVCFECSGQTYWDSNKGKNYR 231
Query: 855 IVHAQWKPDGVQTQMASQDSAYHRAPPKAELESPVFGSPRLASGLFPEWQSWGRVENLAS 1034
I A+ K ++Q +A + P + FGSPR + GLFPEW S+ E L
Sbjct: 232 ITRAELK--------SAQGTAEPQNGPDFGISFDQFGSPRCSYGLFPEWPSYLGYEKLGP 283
Query: 1035 Y 1037
Y
Sbjct: 284 Y 284
>ref|XP_543078.1| PREDICTED: similar to Protein phosphatase 1, regulatory subunit 3D
(Protein phosphatase 1, regulatory subunit 6) (Protein
phosphatase 1 binding subunit R6) [Canis familiaris].
Length = 299
Score = 89.0 bits (219), Expect = 8e-18
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 8/190 (4%)
Frame = +3
Query: 339 RVVFADSKGLSLTAIHVFSDLPEEPVWDLQ-FDLLDLND---ISSGLKRHEEKNLILDFP 506
RV FAD+ GL L + VF+ E+P L L +N SS + L+ DFP
Sbjct: 102 RVRFADALGLELAQVKVFN-AGEDPAVPLHVLSRLAINSDLCCSSQDLEFTLQCLVPDFP 160
Query: 507 QPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDTWQNYTDV 686
P + F + +CLE + + ++GTV+V+NV+FEK+V +R TF W++ +
Sbjct: 161 PP-IEAADFAERLAQRLICLERVTCSDLGISGTVRVRNVAFEKQVAVRYTFSDWRSAHEA 219
Query: 687 DCVYMKNMYGGSESDTFSFAIDLPA-VIPTKEKIEFCISYHANGQVFWDNNEGQNYRIV- 860
+ G D F+F +P ++ ++ F + Y G +WDNN G++Y +
Sbjct: 220 VARWRGPAGAGGTEDVFAFGFPVPPFLLALGSRVHFALRYRVAGAEYWDNNHGRDYSLTC 279
Query: 861 --HAQWKPDG 884
HA P G
Sbjct: 280 RNHALHMPRG 289
>ref|XP_539528.2| PREDICTED: similar to protein phosphatase 1 glycogen-binding
regulatory subunit 3 [Canis familiaris].
Length = 1123
Score = 83.2 bits (204), Expect = 4e-16
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 5/193 (2%)
Frame = +3
Query: 297 SQNDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLNDISSGLKRH 476
S++ + + + +RV FAD+ G +L ++ F WDL D++ +
Sbjct: 51 SEDLYLETSSSGTRRVSFADTFGFNLVSVKEFD------CWDLPSSSTSF-DLTKDIFHT 103
Query: 477 EEKNL--ILDFPQPSADYLSFRNHFQKNFVCLENCSLQ--ERMVTGTVKVKNVSFEKKVQ 644
EE L + D P D + Q LE+ + G ++V N+SFEK V
Sbjct: 104 EEYILSPLFDLPSSKEDLMQ---QLQVQKAVLESTEYPPGSTSMKGIIRVLNISFEKLVY 160
Query: 645 IRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDL-PAVIPTKEKIEFCISYHANGQV 821
+R++ D WQ + D+ Y+ N G E+D FSF I L P K+EFCI Y +
Sbjct: 161 VRMSLDDWQTHYDILAEYVPNSCDG-ETDQFSFKILLVPPYQKDGSKVEFCIRYETSVGT 219
Query: 822 FWDNNEGQNYRIV 860
FW NN G NY ++
Sbjct: 220 FWSNNNGTNYILI 232
>ref|XP_547732.2| PREDICTED: similar to Protein phosphatase 1, regulatory subunit 3D
(Protein phosphatase 1, regulatory subunit 6) (Protein
phosphatase 1 binding subunit R6) [Canis familiaris].
Length = 279
Score = 68.2 bits (165), Expect = 1e-11
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 9/184 (4%)
Frame = +3
Query: 333 KKRVVFADSKGLSLTAIHVF--SDLPEEPVW---DLQFDLL----DLNDISSGLKRHEEK 485
+KRV FAD+ GL L A+ F +LP P LQ D L + GL+ E +
Sbjct: 85 RKRVRFADALGLELAAVRRFRPGELPRVPRHVQAQLQRDALRHFAPCRPRARGLQ--EAR 142
Query: 486 NLILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDT 665
+ +P F Q +CLE V G+ +V ++++EK+V +R + D
Sbjct: 143 AALEPASEPG-----FAARLQAQRICLERAEAGPLGVAGSARVLDLAYEKRVSVRWSADG 197
Query: 666 WQNYTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIEFCISYHANGQVFWDNNEGQ 845
W++ + Y +D F+F + P P + F + Y G FWDNN G+
Sbjct: 198 WRSQREAPAAYAGPAPPPPRADRFAFRLPAP---PIGGALLFALRYRVTGHEFWDNNGGR 254
Query: 846 NYRI 857
+Y +
Sbjct: 255 DYAL 258
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,706,476
Number of extensions: 1278609
Number of successful extensions: 4465
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4459
Number of HSP's successfully gapped: 7
Length of query: 390
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 285
Effective length of database: 15,374,224
Effective search space: 4381653840
Effective search space used: 4381653840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013407
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013407
(1171 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069632.1| protein phosphatase 1 regulatory subunit 3C ... 610 e-175
Alignment gi|NP_001096717.1| protein phosphatase 1 regulatory subunit 3B ... 233 2e-61
Alignment gi|XP_002692459.1| PREDICTED: protein phosphatase 1, regulatory... 89 6e-18
Alignment gi|XP_001250297.1| PREDICTED: protein phosphatase 1, regulatory... 89 6e-18
Alignment gi|NP_001192369.1| protein phosphatase 1 regulatory subunit 3A ... 89 1e-17
Alignment gi|XP_002707859.1| PREDICTED: protein phosphatase 1, regulatory... 89 1e-17
Alignment gi|XP_002690492.1| PREDICTED: FLJ00089 protein-like [Bos taurus]. 70 4e-12
Alignment gi|XP_001788135.1| PREDICTED: FLJ00089 protein-like [Bos taurus]. 70 4e-12
>ref|NP_001069632.1| protein phosphatase 1 regulatory subunit 3C [Bos taurus].
Length = 318
Score = 610 bits (1574), Expect = e-175
Identities = 291/318 (91%), Positives = 307/318 (96%), Gaps = 1/318 (0%)
Frame = +3
Query: 90 MSCTRMIQVLDPRPLTSSVMPVDVAMRLCLAHSPPLKSFLGPYDDFQRRNFVNKLKPLKP 269
MSCTRMIQVLDPRPLTSSVMPVDVA+RLCLAHSPPLKSFL PYDDFQRRNFVNKLKPLK
Sbjct: 1 MSCTRMIQVLDPRPLTSSVMPVDVAVRLCLAHSPPLKSFLSPYDDFQRRNFVNKLKPLKS 60
Query: 270 CLNMKQEAKSQNDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLN 449
CLN+KQEA++Q+DWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLN
Sbjct: 61 CLNIKQEARAQDDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLN 120
Query: 450 DISSGLKRHEEKNLILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSF 629
DISSGLK HEEKNLILDFPQPSADYLSFRNHFQKN VCLENCSLQER VTGTVKVKN+SF
Sbjct: 121 DISSGLKLHEEKNLILDFPQPSADYLSFRNHFQKNSVCLENCSLQERTVTGTVKVKNMSF 180
Query: 630 EKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIEFCISYHA 809
EKKVQIRITFD+WQ+Y DVDC YMKN+YGGSESDTFSFAIDLP+VIPTKEKIEFC++YHA
Sbjct: 181 EKKVQIRITFDSWQSYNDVDCAYMKNVYGGSESDTFSFAIDLPSVIPTKEKIEFCVAYHA 240
Query: 810 NGQVFWDNNEGQNYRIVHAQWKPDGVQTQMASQDSAYHRA-PPKAELESPVFGSPRLASG 986
NGQVFWDNNEGQNYRIVH QWKPDGVQTQMA+QD A+H+A PPKAELES VFGSPRLASG
Sbjct: 241 NGQVFWDNNEGQNYRIVHVQWKPDGVQTQMAAQDCAFHQAPPPKAELESTVFGSPRLASG 300
Query: 987 LFPEWQSWGRVENLASYR 1040
LFPEWQSWGR+ENLASYR
Sbjct: 301 LFPEWQSWGRMENLASYR 318
>ref|NP_001096717.1| protein phosphatase 1 regulatory subunit 3B [Bos taurus].
Length = 284
Score = 233 bits (594), Expect = 2e-61
Identities = 116/263 (44%), Positives = 172/263 (65%), Gaps = 2/263 (0%)
Frame = +3
Query: 255 KPLKPCLNMKQEAKSQNDWKPS--HNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQ 428
KPL+PC+ + + ++ P+ + KKRV FAD++GL+LT + VFS+ ++P+ D+
Sbjct: 31 KPLRPCIQLSGKNEASGTVAPTVQEKKVKKRVSFADNQGLALTMVKVFSEF-DDPL-DIP 88
Query: 429 FDLLDLNDISSGLKRHEEKNLILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTV 608
++ +L D L E ++ +LDF QPSADYL FRN Q + VCLENC L++R + GTV
Sbjct: 89 LNITELLDSIVSLTTAESESFVLDFSQPSADYLDFRNRLQTDHVCLENCVLKDRSIAGTV 148
Query: 609 KVKNVSFEKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIE 788
KV+N++FEK V++R+TFDTW+++TD C Y+K+ Y GS+ DTFSF I LP I + E++E
Sbjct: 149 KVQNLAFEKTVKVRMTFDTWKSFTDFPCWYVKDTYAGSDKDTFSFDISLPEKIQSYERME 208
Query: 789 FCISYHANGQVFWDNNEGQNYRIVHAQWKPDGVQTQMASQDSAYHRAPPKAELESPVFGS 968
F + Y NGQ +WD+N+G+NYRI+ A+ + ++Q +A P E+ FGS
Sbjct: 209 FAVCYECNGQTYWDSNKGKNYRIIRAELQ--------STQGTAQPPNGPDFEIAFDQFGS 260
Query: 969 PRLASGLFPEWQSWGRVENLASY 1037
PR + GLFPEW S+ E L Y
Sbjct: 261 PRCSYGLFPEWPSYLGYEKLGPY 283
>ref|XP_002692459.1| PREDICTED: protein phosphatase 1, regulatory subunit 3D-like [Bos
taurus].
Length = 299
Score = 89.4 bits (220), Expect = 6e-18
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 8/190 (4%)
Frame = +3
Query: 339 RVVFADSKGLSLTAIHVFSDLPEEPVWDLQ-FDLLDLND---ISSGLKRHEEKNLILDFP 506
RV FAD+ GL L + VF+ E+P L L +N SS + L+ DFP
Sbjct: 102 RVRFADALGLELAQVKVFN-AGEDPSVPLHVLSRLAINSDLCCSSQDLEFTLQCLVPDFP 160
Query: 507 QPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDTWQNYTDV 686
P + F + VCLE + + ++GTV+V+NV+FEK+V +R TF W++ +V
Sbjct: 161 PP-VEAPDFGERLGRQLVCLERVTCSDLGISGTVRVRNVAFEKQVAVRYTFSDWRSAHEV 219
Query: 687 DCVYMKNMYGGSESDTFSFAIDLPA-VIPTKEKIEFCISYHANGQVFWDNNEGQNYRIV- 860
+ G D F+F +P ++ ++ F + Y G WDNN+G++Y +
Sbjct: 220 AARWRGPAGSGGSEDVFAFGFPVPPFLLELGSRVHFALRYRVAGAEHWDNNDGRDYSLTC 279
Query: 861 --HAQWKPDG 884
HA P G
Sbjct: 280 RNHALHMPRG 289
>ref|XP_001250297.1| PREDICTED: protein phosphatase 1, regulatory subunit 3D [Bos
taurus].
Length = 299
Score = 89.4 bits (220), Expect = 6e-18
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 8/190 (4%)
Frame = +3
Query: 339 RVVFADSKGLSLTAIHVFSDLPEEPVWDLQ-FDLLDLND---ISSGLKRHEEKNLILDFP 506
RV FAD+ GL L + VF+ E+P L L +N SS + L+ DFP
Sbjct: 102 RVRFADALGLELAQVKVFN-AGEDPSVPLHVLSRLAINSDLCCSSQDLEFTLQCLVPDFP 160
Query: 507 QPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDTWQNYTDV 686
P + F + VCLE + + ++GTV+V+NV+FEK+V +R TF W++ +V
Sbjct: 161 PP-VEAPDFGERLGRQLVCLERVTCSDLGISGTVRVRNVAFEKQVAVRYTFSDWRSAHEV 219
Query: 687 DCVYMKNMYGGSESDTFSFAIDLPA-VIPTKEKIEFCISYHANGQVFWDNNEGQNYRIV- 860
+ G D F+F +P ++ ++ F + Y G WDNN+G++Y +
Sbjct: 220 AARWRGPAGSGGSEDVFAFGFPVPPFLLELGSRVHFALRYRVAGAEHWDNNDGRDYSLTC 279
Query: 861 --HAQWKPDG 884
HA P G
Sbjct: 280 RNHALHMPRG 289
>ref|NP_001192369.1| protein phosphatase 1 regulatory subunit 3A [Bos taurus].
Length = 1117
Score = 88.6 bits (218), Expect = 1e-17
Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 2/190 (1%)
Frame = +3
Query: 297 SQNDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLNDISSGLKRH 476
S++ + S +RV FAD+ GL+L ++ F W+L D D+ +
Sbjct: 51 SEDLYLDSPPSGARRVSFADTFGLNLVSVKEFDS------WELPSGSADF-DLRQDVFHT 103
Query: 477 EEKNLILDFPQPSA-DYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRI 653
EE L F PS+ + L + QK + + G ++V NVSFEK V +R+
Sbjct: 104 EEYVLSPQFGLPSSKEDLMQQLQVQKAILESTEYPPGSTSMKGIIRVLNVSFEKLVYVRM 163
Query: 654 TFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDL-PAVIPTKEKIEFCISYHANGQVFWD 830
+ D WQ+Y D+ Y+ N G E+D FSF I L P K+EFCI Y + FW
Sbjct: 164 SLDDWQSYYDILAEYIPNSCDG-ETDQFSFKISLVPPYQKDGSKVEFCIRYETSVGTFWS 222
Query: 831 NNEGQNYRIV 860
NN G NY ++
Sbjct: 223 NNNGTNYVLI 232
>ref|XP_002707859.1| PREDICTED: protein phosphatase 1, regulatory (inhibitor) subunit
3C-like [Bos taurus].
Length = 1117
Score = 88.6 bits (218), Expect = 1e-17
Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 2/190 (1%)
Frame = +3
Query: 297 SQNDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLNDISSGLKRH 476
S++ + S +RV FAD+ GL+L ++ F W+L D D+ +
Sbjct: 51 SEDLYLDSPPSGARRVSFADTFGLNLVSVKEFDS------WELPSGSADF-DLRQDVFHT 103
Query: 477 EEKNLILDFPQPSA-DYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRI 653
EE L F PS+ + L + QK + + G ++V NVSFEK V +R+
Sbjct: 104 EEYVLSPQFGLPSSKEDLMQQLQVQKAILESTEYPPGSTSMKGIIRVLNVSFEKLVYVRM 163
Query: 654 TFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDL-PAVIPTKEKIEFCISYHANGQVFWD 830
+ D WQ+Y D+ Y+ N G E+D FSF I L P K+EFCI Y + FW
Sbjct: 164 SLDDWQSYYDILAEYIPNSCDG-ETDQFSFKISLVPPYQKDGSKVEFCIRYETSVGTFWS 222
Query: 831 NNEGQNYRIV 860
NN G NY ++
Sbjct: 223 NNNGTNYVLI 232
>ref|XP_002690492.1| PREDICTED: FLJ00089 protein-like [Bos taurus].
Length = 417
Score = 70.1 bits (170), Expect = 4e-12
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 6/181 (3%)
Frame = +3
Query: 333 KKRVVFADSKGLSLTAIHVF--SDLPEEPVW---DLQFDLL-DLNDISSGLKRHEEKNLI 494
+KRV FAD+ GL L A+ F +LP P LQ D L + +E
Sbjct: 223 RKRVRFADALGLELAAVRRFRPGELPRVPRHVQVQLQRDALRHFAPCQPRARGLQEARAA 282
Query: 495 LDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDTWQN 674
L+ A F Q +CLE V G+ +V ++++EK+V +R + D W++
Sbjct: 283 LE----PASEPGFAARLQAQRICLERVEAGPLGVAGSARVLDLAYEKRVSVRWSADGWRS 338
Query: 675 YTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIEFCISYHANGQVFWDNNEGQNYR 854
+ Y +D FSF + P P + F + Y G+ FWDNN G++Y
Sbjct: 339 QREAPAAYAGPAPPPPRADRFSFRLPAP---PIGGSLLFALRYRVTGREFWDNNGGRDYA 395
Query: 855 I 857
+
Sbjct: 396 L 396
>ref|XP_001788135.1| PREDICTED: FLJ00089 protein-like [Bos taurus].
Length = 417
Score = 70.1 bits (170), Expect = 4e-12
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 6/181 (3%)
Frame = +3
Query: 333 KKRVVFADSKGLSLTAIHVF--SDLPEEPVW---DLQFDLL-DLNDISSGLKRHEEKNLI 494
+KRV FAD+ GL L A+ F +LP P LQ D L + +E
Sbjct: 223 RKRVRFADALGLELAAVRRFRPGELPRVPRHVQVQLQRDALRHFAPCQPRARGLQEARAA 282
Query: 495 LDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDTWQN 674
L+ A F Q +CLE V G+ +V ++++EK+V +R + D W++
Sbjct: 283 LE----PASEPGFAARLQAQRICLERVEAGPLGVAGSARVLDLAYEKRVSVRWSADGWRS 338
Query: 675 YTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIEFCISYHANGQVFWDNNEGQNYR 854
+ Y +D FSF + P P + F + Y G+ FWDNN G++Y
Sbjct: 339 QREAPAAYAGPAPPPPRADRFSFRLPAP---PIGGSLLFALRYRVTGREFWDNNGGRDYA 395
Query: 855 I 857
+
Sbjct: 396 L 396
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,588,676
Number of extensions: 1222513
Number of successful extensions: 4593
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4569
Number of HSP's successfully gapped: 8
Length of query: 390
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,240,222
Effective search space: 4072703492
Effective search space used: 4072703492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013407
(1171 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926556.1| PREDICTED: protein phosphatase 1 regulatory ... 660 0.0
Alignment gi|XP_003133445.1| PREDICTED: protein phosphatase 1 regulatory ... 233 2e-61
Alignment gi|XP_003134554.1| PREDICTED: protein phosphatase 1 regulatory ... 89 5e-18
Alignment gi|XP_003360205.1| PREDICTED: LOW QUALITY PROTEIN: protein phos... 87 2e-17
Alignment gi|XP_003356749.1| PREDICTED: LOW QUALITY PROTEIN: protein phos... 68 1e-11
>ref|XP_001926556.1| PREDICTED: protein phosphatase 1 regulatory subunit 3C [Sus scrofa].
Length = 317
Score = 660 bits (1703), Expect = 0.0
Identities = 317/317 (100%), Positives = 317/317 (100%)
Frame = +3
Query: 90 MSCTRMIQVLDPRPLTSSVMPVDVAMRLCLAHSPPLKSFLGPYDDFQRRNFVNKLKPLKP 269
MSCTRMIQVLDPRPLTSSVMPVDVAMRLCLAHSPPLKSFLGPYDDFQRRNFVNKLKPLKP
Sbjct: 1 MSCTRMIQVLDPRPLTSSVMPVDVAMRLCLAHSPPLKSFLGPYDDFQRRNFVNKLKPLKP 60
Query: 270 CLNMKQEAKSQNDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLN 449
CLNMKQEAKSQNDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLN
Sbjct: 61 CLNMKQEAKSQNDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLN 120
Query: 450 DISSGLKRHEEKNLILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSF 629
DISSGLKRHEEKNLILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSF
Sbjct: 121 DISSGLKRHEEKNLILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSF 180
Query: 630 EKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIEFCISYHA 809
EKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIEFCISYHA
Sbjct: 181 EKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIEFCISYHA 240
Query: 810 NGQVFWDNNEGQNYRIVHAQWKPDGVQTQMASQDSAYHRAPPKAELESPVFGSPRLASGL 989
NGQVFWDNNEGQNYRIVHAQWKPDGVQTQMASQDSAYHRAPPKAELESPVFGSPRLASGL
Sbjct: 241 NGQVFWDNNEGQNYRIVHAQWKPDGVQTQMASQDSAYHRAPPKAELESPVFGSPRLASGL 300
Query: 990 FPEWQSWGRVENLASYR 1040
FPEWQSWGRVENLASYR
Sbjct: 301 FPEWQSWGRVENLASYR 317
>ref|XP_003133445.1| PREDICTED: protein phosphatase 1 regulatory subunit 3B-like [Sus
scrofa].
Length = 284
Score = 233 bits (593), Expect = 2e-61
Identities = 116/263 (44%), Positives = 172/263 (65%), Gaps = 2/263 (0%)
Frame = +3
Query: 255 KPLKPCLNMKQEAKSQNDWKPS--HNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQ 428
KPL+PC+ + + ++ P+ + KKRV FAD++GL+LT + VFS+ ++P+ D+
Sbjct: 31 KPLRPCIQLSSKNEASGTVAPTVQEKKVKKRVSFADNQGLALTMVKVFSEF-DDPL-DIP 88
Query: 429 FDLLDLNDISSGLKRHEEKNLILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTV 608
++ +L D L E ++ +LDF QPSADYL FRN Q + VCLENC L++R + GTV
Sbjct: 89 LNITELLDNIVSLTTAESESFVLDFAQPSADYLDFRNRLQTDHVCLENCVLKDRAIEGTV 148
Query: 609 KVKNVSFEKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIE 788
KV+N++FEK V++R+TFDTW+++TD C Y+K+ Y GS+ DTFSF I LP I + E++E
Sbjct: 149 KVQNLAFEKMVKVRMTFDTWKSFTDFPCWYVKDTYAGSDRDTFSFDISLPEKIQSYERME 208
Query: 789 FCISYHANGQVFWDNNEGQNYRIVHAQWKPDGVQTQMASQDSAYHRAPPKAELESPVFGS 968
F + Y NGQ +WD+N+G+NYRI+ A+ K ++Q +A + P + FGS
Sbjct: 209 FAVCYECNGQTYWDSNKGKNYRIIRAELK--------STQGTAQPQNGPDFGIALDQFGS 260
Query: 969 PRLASGLFPEWQSWGRVENLASY 1037
PR + GLFPEW S+ E L Y
Sbjct: 261 PRCSYGLFPEWPSYLGYEKLGPY 283
>ref|XP_003134554.1| PREDICTED: protein phosphatase 1 regulatory subunit 3D-like [Sus
scrofa].
Length = 299
Score = 89.0 bits (219), Expect = 5e-18
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 9/191 (4%)
Frame = +3
Query: 339 RVVFADSKGLSLTAIHVFS--DLPEEPVWDLQFDLLDLND---ISSGLKRHEEKNLILDF 503
RV FAD+ GL L + VF+ D P P+ L L +N SS + L+ DF
Sbjct: 102 RVRFADALGLELAQVKVFNAGDDPSVPLHVLS--RLAINSDLCCSSQDLEFTLQCLVPDF 159
Query: 504 PQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDTWQNYTD 683
P P + F + VCLE + + ++GTV+V+NV+FEK+V +R TF WQ+ +
Sbjct: 160 PPP-VEAPDFGERLGRQLVCLERVTCSDLGISGTVRVRNVAFEKQVAVRYTFSDWQSAHE 218
Query: 684 VDCVYMKNMYGGSESDTFSFAIDLPA-VIPTKEKIEFCISYHANGQVFWDNNEGQNYRIV 860
+ D F+F +P ++ ++ F + Y G +WDNN+G++Y +
Sbjct: 219 AGARWRGPAGAEGAEDVFAFGFPVPPFLLALGSRVHFALRYRVAGAEYWDNNDGRDYSLT 278
Query: 861 ---HAQWKPDG 884
HA P G
Sbjct: 279 CRNHALHMPRG 289
>ref|XP_003360205.1| PREDICTED: LOW QUALITY PROTEIN: protein phosphatase 1 regulatory
subunit 3A-like [Sus scrofa].
Length = 1118
Score = 86.7 bits (213), Expect = 2e-17
Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 5/180 (2%)
Frame = +3
Query: 336 KRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLNDISSGLKRHEEKNL--ILDFPQ 509
+RV FAD+ G +L ++ F W+L D D++ + EE L + D P
Sbjct: 65 RRVSFADTFGFNLVSVKEFDS------WELPSSSTDF-DLTKDIFHTEEYVLTPLFDLPS 117
Query: 510 PSADYLSFRNHFQKNFVCLENCSLQ--ERMVTGTVKVKNVSFEKKVQIRITFDTWQNYTD 683
D + Q LE+ + G ++V N+SFEK V +R++ D WQ Y D
Sbjct: 118 SKEDLMQ---QLQVQKAILESAEYPPGSTSMKGIIRVLNISFEKLVYVRMSLDDWQTYYD 174
Query: 684 VDCVYMKNMYGGSESDTFSFAIDL-PAVIPTKEKIEFCISYHANGQVFWDNNEGQNYRIV 860
+ Y+ N G ++D FSF I L P K+EFCI Y + FW NN G NY +V
Sbjct: 175 ILAEYVPNSCDG-DTDQFSFKISLVPPYQKDGSKVEFCIRYETSVGTFWSNNNGTNYILV 233
>ref|XP_003356749.1| PREDICTED: LOW QUALITY PROTEIN: protein phosphatase 1 regulatory
subunit 3E-like [Sus scrofa].
Length = 279
Score = 67.8 bits (164), Expect = 1e-11
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 6/181 (3%)
Frame = +3
Query: 333 KKRVVFADSKGLSLTAIHVF--SDLPEEPVW---DLQFDLL-DLNDISSGLKRHEEKNLI 494
+KRV FAD+ GL L A+ F +LP P LQ D L + +E
Sbjct: 85 RKRVRFADALGLELAAVRRFCPGELPRVPRHVQVQLQRDALRHFAPCQPRARGLQEARAA 144
Query: 495 LDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDTWQN 674
L+ A F Q +CLE V G+ +V ++++EK+V +R + D W++
Sbjct: 145 LE----PASEPGFVARLQAQRICLERAEAGPLGVAGSARVLDLAYEKRVSVRWSADGWRS 200
Query: 675 YTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIEFCISYHANGQVFWDNNEGQNYR 854
+ Y +D F+F + P P + F + Y G FWDNN G++Y
Sbjct: 201 QREAPAAYAGPAPPPPRADRFAFRLPAP---PIGGALLFALRYRVTGHEFWDNNGGRDYA 257
Query: 855 I 857
+
Sbjct: 258 L 258
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,768,004
Number of extensions: 789625
Number of successful extensions: 2809
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2798
Number of HSP's successfully gapped: 7
Length of query: 390
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 289
Effective length of database: 8,829,335
Effective search space: 2551677815
Effective search space used: 2551677815
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013407
(1171 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058550.1| protein phosphatase 1 regulatory subunit 3C [Mu... 579 e-165
Alignment gi|NP_808409.1| protein phosphatase 1 regulatory subunit 3B [Mu... 232 5e-61
Alignment gi|NP_536712.2| protein phosphatase 1 regulatory subunit 3A [Mu... 90 3e-18
Alignment gi|NP_001078970.1| protein phosphatase 1 regulatory subunit 3D ... 82 8e-16
Alignment gi|NP_001161380.1| protein phosphatase 1 regulatory subunit 3E ... 65 8e-11
Alignment gi|NP_083904.1| putative protein phosphatase 1 regulatory inhib... 61 2e-09
>ref|NP_058550.1| protein phosphatase 1 regulatory subunit 3C [Mus musculus].
Length = 317
Score = 579 bits (1493), Expect = e-165
Identities = 271/317 (85%), Positives = 293/317 (92%)
Frame = +3
Query: 90 MSCTRMIQVLDPRPLTSSVMPVDVAMRLCLAHSPPLKSFLGPYDDFQRRNFVNKLKPLKP 269
MSCTRMI VLDPRPLTSSVMPVD+AMR+CLAHSPPLKSFLGPY+ FQRRNFVNKLKPLKP
Sbjct: 1 MSCTRMIHVLDPRPLTSSVMPVDMAMRICLAHSPPLKSFLGPYNGFQRRNFVNKLKPLKP 60
Query: 270 CLNMKQEAKSQNDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLN 449
CL++KQEAKSQ++WK HNQAKKRVVFADSKGLSLTAIHVFSDLPEEP WDLQFDLLDLN
Sbjct: 61 CLSVKQEAKSQSEWKSPHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPAWDLQFDLLDLN 120
Query: 450 DISSGLKRHEEKNLILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSF 629
DISS LK HEEKNL+ DFPQPS DYLSFR+ FQKNFVCLENCSLQ+R VTGTVKVKNVSF
Sbjct: 121 DISSSLKLHEEKNLVFDFPQPSTDYLSFRDRFQKNFVCLENCSLQDRTVTGTVKVKNVSF 180
Query: 630 EKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIEFCISYHA 809
EKKVQ+RITFDTW+ YTDVDCVYMKN+Y S+SDTFSFAIDLP VIPT+EKIEFCISYHA
Sbjct: 181 EKKVQVRITFDTWKTYTDVDCVYMKNVYSSSDSDTFSFAIDLPRVIPTEEKIEFCISYHA 240
Query: 810 NGQVFWDNNEGQNYRIVHAQWKPDGVQTQMASQDSAYHRAPPKAELESPVFGSPRLASGL 989
NG++FWDNNEGQNYRIVH QWKPDGVQTQ+A +D A+ + PPK E+E VFGSPRLASGL
Sbjct: 241 NGRIFWDNNEGQNYRIVHVQWKPDGVQTQVAPKDCAFQQGPPKTEIEPTVFGSPRLASGL 300
Query: 990 FPEWQSWGRVENLASYR 1040
FPEWQSWGRVENL SYR
Sbjct: 301 FPEWQSWGRVENLTSYR 317
>ref|NP_808409.1| protein phosphatase 1 regulatory subunit 3B [Mus musculus].
Length = 284
Score = 232 bits (591), Expect = 5e-61
Identities = 119/263 (45%), Positives = 167/263 (63%), Gaps = 2/263 (0%)
Frame = +3
Query: 255 KPLKPCLNM--KQEAKSQNDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQ 428
KPL+PC+ + K EA + KKRV FAD++GL+LT + VFS+ ++P+ D+
Sbjct: 31 KPLRPCIQLGSKDEASGMVAPAVQEKKVKKRVSFADNQGLALTMVKVFSEF-DDPL-DIP 88
Query: 429 FDLLDLNDISSGLKRHEEKNLILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTV 608
F++ +L D L E ++ +LDFPQPSADYL FRN Q N VCLENC L+++ + GTV
Sbjct: 89 FNITELLDNIVSLTTAESESFVLDFPQPSADYLDFRNRLQTNHVCLENCVLKDKAIAGTV 148
Query: 609 KVKNVSFEKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIE 788
KV+N++FEK V+IR+TFDTW+++TD C Y+K+ Y GS+ DTFSF I LP I + E++E
Sbjct: 149 KVQNLAFEKVVKIRMTFDTWKSFTDFPCQYVKDTYAGSDRDTFSFDISLPEKIQSYERME 208
Query: 789 FCISYHANGQVFWDNNEGQNYRIVHAQWKPDGVQTQMASQDSAYHRAPPKAELESPVFGS 968
F + Y NGQ +WD+N+G+NYRI A+ + +S P + FGS
Sbjct: 209 FAVCYECNGQAYWDSNKGKNYRITRAELR--------SSPGKIEPYNGPDFGISFDQFGS 260
Query: 969 PRLASGLFPEWQSWGRVENLASY 1037
PR + GLFPEW S+ E L Y
Sbjct: 261 PRCSFGLFPEWPSYLGYEKLGPY 283
>ref|NP_536712.2| protein phosphatase 1 regulatory subunit 3A [Mus musculus].
Length = 1089
Score = 90.1 bits (222), Expect = 3e-18
Identities = 65/200 (32%), Positives = 94/200 (47%), Gaps = 2/200 (1%)
Frame = +3
Query: 267 PCLNMKQEAKSQNDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDL 446
P + + S++ + + A +RV FADS G SL ++ F W+L D
Sbjct: 41 PQPSRRGSGSSEDMYLDTPTSASRRVSFADSLGFSLVSVKEFD------CWELPSVSTDF 94
Query: 447 NDISSGLKRHEEKNLILDFPQPSADYLSFRNHFQKNFVCLENCS-LQERMVTGTVKVKNV 623
D+S + +E L F PS+ Q LE+ L + G ++V N+
Sbjct: 95 -DLSGDVFHTDEYVLSPLFDLPSSKE-KLMEQLQVQKAVLESAEHLPGSSMKGIIRVLNI 152
Query: 624 SFEKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDL-PAVIPTKEKIEFCIS 800
SFEK V +R++ D WQ + D+ Y+ N G E+D FSF I L P K+EFCI
Sbjct: 153 SFEKLVYVRMSLDDWQTHYDILAEYVPNSCDG-ETDQFSFKISLVPPYQKEGGKVEFCIR 211
Query: 801 YHANGQVFWDNNEGQNYRIV 860
Y + FW NN G NY +V
Sbjct: 212 YETSAGTFWSNNNGTNYILV 231
>ref|NP_001078970.1| protein phosphatase 1 regulatory subunit 3D [Mus musculus].
Length = 279
Score = 82.0 bits (201), Expect = 8e-16
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 9/191 (4%)
Frame = +3
Query: 339 RVVFADSKGLSLTAIHVFS--DLPEEPVWDLQFDLLDLND---ISSGLKRHEEKNLILDF 503
RV FAD+ GL L + VF+ D P P+ L L +N SS + L+ DF
Sbjct: 82 RVRFADALGLELAQVKVFNAGDDPSVPLHVLS--RLAINSDLCCSSQDLEFTLQCLVPDF 139
Query: 504 PQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDTWQNYTD 683
P + F + VCLE + + ++GTV+V+NV+FEK+V +R TF W++ +
Sbjct: 140 -SPPIETPGFGERLARQLVCLERVTCSDLGISGTVRVRNVAFEKQVTVRYTFSGWRSAHE 198
Query: 684 VDCVYMKNMYGGSESDTFSFAIDLPA-VIPTKEKIEFCISYHANGQVFWDNNEGQNYRIV 860
+ D F+F +P ++ ++ F + Y G +WDNN+G++Y +
Sbjct: 199 AVARWRGPAGAEGTEDIFAFGFPVPPFLLELGSQVHFALRYGVAGAEYWDNNDGRDYSLT 258
Query: 861 ---HAQWKPDG 884
HA P G
Sbjct: 259 CRSHALHMPRG 269
>ref|NP_001161380.1| protein phosphatase 1 regulatory subunit 3E [Mus musculus].
Length = 279
Score = 65.5 bits (158), Expect = 8e-11
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 6/182 (3%)
Frame = +3
Query: 333 KKRVVFADSKGLSLTAIHVFSD-----LPEEPVWDLQFDLL-DLNDISSGLKRHEEKNLI 494
+KRV FAD+ GL L + F +P LQ D L + +E +
Sbjct: 85 RKRVRFADALGLELAVVRRFRPGEPPRVPRHVQVQLQRDALRHFAPCPPRARGLQEARVA 144
Query: 495 LDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDTWQN 674
L+ P+ + F Q +CLE V G+ +V ++++EK+V +R + D W++
Sbjct: 145 LE---PALEP-GFAARLQAQRICLERADAGPLGVAGSARVLDLAYEKRVSVRWSADGWRS 200
Query: 675 YTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIEFCISYHANGQVFWDNNEGQNYR 854
+ Y +D F+F + P P + F + Y G+ FWDNN G++Y
Sbjct: 201 LRESPASYAGPAPSPPRADRFAFRLPAP---PVGGTLLFALRYRVTGREFWDNNGGRDYA 257
Query: 855 IV 860
++
Sbjct: 258 LL 259
>ref|NP_083904.1| putative protein phosphatase 1 regulatory inhibitor subunit 3G [Mus
musculus].
Length = 347
Score = 60.8 bits (146), Expect = 2e-09
Identities = 81/322 (25%), Positives = 120/322 (37%), Gaps = 59/322 (18%)
Frame = +3
Query: 69 VPPPLCLMSCTRMIQVLDPRPLTSSVMPVDVAMRLCLAHSPPLKSFLGPYDDFQRRNFVN 248
VP LC+ S T + D + + P A + P + L Y + R+F
Sbjct: 30 VPEVLCVESGTSETPIPDAQLQDRPLSPQKGA-------ALPEQEELQEYRRSRARSFSL 82
Query: 249 KLKPLKPCLNMKQEAKSQNDWKPSH----------NQAKKRVVFADSKGLSLTAIHVFSD 398
P+ + Q+ Q +PS ++ KKRV FADS GLSL ++ FS+
Sbjct: 83 PADPILQAAKLLQQR--QQAGQPSSEGGAPAGDCCSKCKKRVQFADSLGLSLASVKHFSE 140
Query: 399 LPEEPVWDLQFDLLDLNDISSGLKRHEEKNL-----ILDFPQP-SADYLSFRNHFQ---- 548
E V L S L+ + + L + P P R HFQ
Sbjct: 141 AEEPQVPPAVLSRLH----SFPLRAEDLQQLGGLLAVATMPDPLLVPCARLRPHFQLPEL 196
Query: 549 --------KNFVCLE--NCSLQERM-VTGTVKVKNVSFEKKVQIRITFDTWQNYTDVDCV 695
+ VCLE CS R VTG+ +V + + V +R TF W+ + DV
Sbjct: 197 RAAEERLRRQRVCLERVQCSQPPRAEVTGSGRVISCPGPRAVAVRYTFTEWRTFLDVPAE 256
Query: 696 Y-------------------MKNMYGGSESDTFSFAIDLPAVIPTKE---------KIEF 791
++ G ++ F F++ LP + KE I F
Sbjct: 257 LDPESVEPLPPLQSGDSGSKAEDSEEGPGTERFHFSLCLPPGLQPKEGEDAGAWGVAIHF 316
Query: 792 CISYHANGQVFWDNNEGQNYRI 857
+ Y +WDNNEG NY +
Sbjct: 317 AVCYRCEQGEYWDNNEGANYTL 338
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,629,382
Number of extensions: 1034082
Number of successful extensions: 3636
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3617
Number of HSP's successfully gapped: 8
Length of query: 390
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 287
Effective length of database: 12,523,851
Effective search space: 3594345237
Effective search space used: 3594345237
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013407
(1171 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005389.1| protein phosphatase 1 regulatory subunit 3C [Ho... 600 e-172
Alignment gi|NP_001188258.1| protein phosphatase 1 regulatory subunit 3B ... 234 1e-61
Alignment gi|NP_078883.2| protein phosphatase 1 regulatory subunit 3B [Ho... 234 1e-61
Alignment gi|NP_002702.2| protein phosphatase 1 regulatory subunit 3A [Ho... 88 2e-17
Alignment gi|NP_006233.1| protein phosphatase 1 regulatory subunit 3D [Ho... 85 1e-16
>ref|NP_005389.1| protein phosphatase 1 regulatory subunit 3C [Homo sapiens].
Length = 317
Score = 600 bits (1547), Expect = e-172
Identities = 283/317 (89%), Positives = 301/317 (94%)
Frame = +3
Query: 90 MSCTRMIQVLDPRPLTSSVMPVDVAMRLCLAHSPPLKSFLGPYDDFQRRNFVNKLKPLKP 269
MSCTRMIQVLDPRPLTSSVMPVDVAMRLCLAHSPP+KSFLGPYD+FQRR+FVNKLKPLK
Sbjct: 1 MSCTRMIQVLDPRPLTSSVMPVDVAMRLCLAHSPPVKSFLGPYDEFQRRHFVNKLKPLKS 60
Query: 270 CLNMKQEAKSQNDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLN 449
CLN+K +AKSQNDWK SHNQAKKRVVFADSKGLSLTAIHVFSDLPEEP WDLQFDLLDLN
Sbjct: 61 CLNIKHKAKSQNDWKCSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPAWDLQFDLLDLN 120
Query: 450 DISSGLKRHEEKNLILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSF 629
DISS LK HEEKNLILDFPQPS DYLSFR+HFQKNFVCLENCSLQER VTGTVKVKNVSF
Sbjct: 121 DISSALKHHEEKNLILDFPQPSTDYLSFRSHFQKNFVCLENCSLQERTVTGTVKVKNVSF 180
Query: 630 EKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIEFCISYHA 809
EKKVQIRITFD+W+NYTDVDCVYMKN+YGG++SDTFSFAIDLP VIPT++KIEFCISYHA
Sbjct: 181 EKKVQIRITFDSWKNYTDVDCVYMKNVYGGTDSDTFSFAIDLPPVIPTEQKIEFCISYHA 240
Query: 810 NGQVFWDNNEGQNYRIVHAQWKPDGVQTQMASQDSAYHRAPPKAELESPVFGSPRLASGL 989
NGQVFWDNN+GQNYRIVH QWKPDGVQTQMA QD A+H+ PK ELES +FGSPRLASGL
Sbjct: 241 NGQVFWDNNDGQNYRIVHVQWKPDGVQTQMAPQDCAFHQTSPKTELESTIFGSPRLASGL 300
Query: 990 FPEWQSWGRVENLASYR 1040
FPEWQSWGR+ENLASYR
Sbjct: 301 FPEWQSWGRMENLASYR 317
>ref|NP_001188258.1| protein phosphatase 1 regulatory subunit 3B [Homo sapiens].
Length = 285
Score = 234 bits (596), Expect = 1e-61
Identities = 117/263 (44%), Positives = 170/263 (64%), Gaps = 2/263 (0%)
Frame = +3
Query: 255 KPLKPCLNMKQEAKSQNDWKPS--HNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQ 428
KPL+PC+ + + ++ P+ + KKRV FAD++GL+LT + VFS+ ++P+ D+
Sbjct: 32 KPLRPCIQLSSKNEASGMVAPAVQEKKVKKRVSFADNQGLALTMVKVFSEF-DDPL-DMP 89
Query: 429 FDLLDLNDISSGLKRHEEKNLILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTV 608
F++ +L D L E ++ +LDF QPSADYL FRN Q + VCLENC L+++ + GTV
Sbjct: 90 FNITELLDNIVSLTTAESESFVLDFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTV 149
Query: 609 KVKNVSFEKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIE 788
KV+N++FEK V+IR+TFDTW++YTD C Y+K+ Y GS+ DTFSF I LP I + E++E
Sbjct: 150 KVQNLAFEKTVKIRMTFDTWKSYTDFPCQYVKDTYAGSDRDTFSFDISLPEKIQSYERME 209
Query: 789 FCISYHANGQVFWDNNEGQNYRIVHAQWKPDGVQTQMASQDSAYHRAPPKAELESPVFGS 968
F + Y NGQ +WD+N G+NYRI+ A+ K ++Q + P + FGS
Sbjct: 210 FAVYYECNGQTYWDSNRGKNYRIIRAELK--------STQGMTKPHSGPDLGISFDQFGS 261
Query: 969 PRLASGLFPEWQSWGRVENLASY 1037
PR + GLFPEW S+ E L Y
Sbjct: 262 PRCSYGLFPEWPSYLGYEKLGPY 284
>ref|NP_078883.2| protein phosphatase 1 regulatory subunit 3B [Homo sapiens].
Length = 285
Score = 234 bits (596), Expect = 1e-61
Identities = 117/263 (44%), Positives = 170/263 (64%), Gaps = 2/263 (0%)
Frame = +3
Query: 255 KPLKPCLNMKQEAKSQNDWKPS--HNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQ 428
KPL+PC+ + + ++ P+ + KKRV FAD++GL+LT + VFS+ ++P+ D+
Sbjct: 32 KPLRPCIQLSSKNEASGMVAPAVQEKKVKKRVSFADNQGLALTMVKVFSEF-DDPL-DMP 89
Query: 429 FDLLDLNDISSGLKRHEEKNLILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTV 608
F++ +L D L E ++ +LDF QPSADYL FRN Q + VCLENC L+++ + GTV
Sbjct: 90 FNITELLDNIVSLTTAESESFVLDFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTV 149
Query: 609 KVKNVSFEKKVQIRITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDLPAVIPTKEKIE 788
KV+N++FEK V+IR+TFDTW++YTD C Y+K+ Y GS+ DTFSF I LP I + E++E
Sbjct: 150 KVQNLAFEKTVKIRMTFDTWKSYTDFPCQYVKDTYAGSDRDTFSFDISLPEKIQSYERME 209
Query: 789 FCISYHANGQVFWDNNEGQNYRIVHAQWKPDGVQTQMASQDSAYHRAPPKAELESPVFGS 968
F + Y NGQ +WD+N G+NYRI+ A+ K ++Q + P + FGS
Sbjct: 210 FAVYYECNGQTYWDSNRGKNYRIIRAELK--------STQGMTKPHSGPDLGISFDQFGS 261
Query: 969 PRLASGLFPEWQSWGRVENLASY 1037
PR + GLFPEW S+ E L Y
Sbjct: 262 PRCSYGLFPEWPSYLGYEKLGPY 284
>ref|NP_002702.2| protein phosphatase 1 regulatory subunit 3A [Homo sapiens].
Length = 1122
Score = 87.8 bits (216), Expect = 2e-17
Identities = 63/191 (32%), Positives = 91/191 (47%), Gaps = 3/191 (1%)
Frame = +3
Query: 297 SQNDWKPSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPVWDLQFDLLDLNDISSGLKRH 476
S++ + + + +RV FADS G +L ++ F D E P FDL + +
Sbjct: 49 SEDIYLDTPSSGTRRVSFADSFGFNLVSVKEF-DCWELPSASTTFDL------GTDIFHT 101
Query: 477 EEKNL--ILDFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIR 650
EE L + D P D + + QK + L + G ++V NVSFEK V +R
Sbjct: 102 EEYVLAPLFDLPSSKEDLMQ-QLQIQKAILESTESLLGSTSIKGIIRVLNVSFEKLVYVR 160
Query: 651 ITFDTWQNYTDVDCVYMKNMYGGSESDTFSFAIDL-PAVIPTKEKIEFCISYHANGQVFW 827
++ D WQ + D+ Y+ N G E+D FSF I L P K+EFCI Y + FW
Sbjct: 161 MSLDDWQTHYDILAEYVPNSCDG-ETDQFSFKIVLVPPYQKDGSKVEFCIRYETSVGTFW 219
Query: 828 DNNEGQNYRIV 860
NN G NY +
Sbjct: 220 SNNNGTNYTFI 230
>ref|NP_006233.1| protein phosphatase 1 regulatory subunit 3D [Homo sapiens].
Length = 299
Score = 84.7 bits (208), Expect = 1e-16
Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Frame = +3
Query: 333 KKRVVFADSKGLSLTAIHVFS--DLPEEPVWDLQFDLLDLND---ISSGLKRHEEKNLIL 497
K RV FAD+ GL L + VF+ D P P+ L L +N SS L+
Sbjct: 100 KLRVRFADALGLELAQVKVFNAGDDPSVPLHVLS--RLAINSDLCCSSQDLEFTLHCLVP 157
Query: 498 DFPQPSADYLSFRNHFQKNFVCLENCSLQERMVTGTVKVKNVSFEKKVQIRITFDTWQNY 677
DFP P + F Q+ VCLE + + ++GTV+V NV+FEK+V +R TF W++
Sbjct: 158 DFPPP-VEAADFGERLQRQLVCLERVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRST 216
Query: 678 TDVDCVYMKNMYGGSESDTFSFAIDLPA-VIPTKEKIEFCISYHANGQVFWDNNEGQNYR 854
+ + D F+F +P ++ ++ F + Y G +WDNN+ ++Y
Sbjct: 217 HEAVARWRGPAGPEGTEDVFTFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYS 276
Query: 855 IV---HAQWKPDG 884
+ HA P G
Sbjct: 277 LTCRNHALHMPRG 289
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,745,248
Number of extensions: 1241556
Number of successful extensions: 4349
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4336
Number of HSP's successfully gapped: 7
Length of query: 390
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,868,908
Effective search space: 4252507688
Effective search space used: 4252507688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013407
(1171 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 2099 0.0
gb|JH118686.1| Sus scrofa unplaced genomic scaffold ChrUScaf1754 1649 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 2099 bits (1059), Expect = 0.0
Identities = 1070/1073 (99%), Gaps = 1/1073 (0%)
Strand = Plus / Minus
Query: 100 ccagaatgatccaggttttagatccacggcctttgacaagttcagtcatgcccgtggatg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112655149 ccagaatgatccaggttttagatccacggcctttgacaagttcagtcatgcccgtggatg 112655090
Query: 160 tggccatgagactctgcttggctcactcaccacctctgaagagtttcctgggcccttatg 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112655089 tggccatgagactctgcttggctcactcaccacctctgaagagtttcctgggcccttatg 112655030
Query: 220 atgacttccaacgaagaaattttgtgaacaaattaaagcctctgaagccgtgtctcaaca 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112655029 atgacttccaacgaagaaattttgtgaacaaattaaagcctctgaagccgtgtctcaaca 112654970
Query: 280 tgaaacaggaagccaaatcacagaatgattggaagccttcgcacaaccaagccaagaagc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654969 tgaaacaggaagccaaatcacagaatgattggaagccttcgcacaaccaagccaagaagc 112654910
Query: 340 gggtggtgttcgctgactccaagggcctctccctcaccgccattcacgtcttctcagacc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654909 gggtggtgttcgctgactccaagggcctctccctcaccgccattcacgtcttctcagacc 112654850
Query: 400 tcccggaagagccagtgtgggatctccagtttgacctcttggaccttaatgatatctcct 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654849 tcccggaagagccagtgtgggatctccagtttgacctcttggaccttaatgatatctcct 112654790
Query: 460 cgggcttaaaacgccacgaagagaagaacttgattttagatttccctcagccctcagctg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654789 cgggcttaaaacgccacgaagagaagaacttgattttagatttccctcagccctcagctg 112654730
Query: 520 attacttaagttttcgaaaccacttccagaagaactttgtctgcctggagaactgctctt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654729 attacttaagttttcgaaaccacttccagaagaactttgtctgcctggagaactgctctt 112654670
Query: 580 tgcaagagcgaatggtgacggggactgtgaaggtgaaaaatgtgagctttgagaagaagg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654669 tgcaagagcgaatggtgacggggactgtgaaggtgaaaaatgtgagctttgagaagaagg 112654610
Query: 640 ttcagatccggatcacttttgatacctggcagaactacaccgacgtggactgcgtctaca 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654609 ttcagatccggatcacttttgatacctggcagaactacaccgacgtggactgcgtctaca 112654550
Query: 700 tgaagaatatgtacggtggctcagagagtgacactttctcgtttgccattgacctacccg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654549 tgaagaatatgtacggtggctcagagagtgacactttctcgtttgccattgacctacccg 112654490
Query: 760 ctgtgatcccaacaaaggagaaaattgagttctgcatctcgtaccatgccaacgggcagg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654489 ctgtgatcccaacaaaggagaaaattgagttctgcatctcgtaccatgccaacgggcagg 112654430
Query: 820 tcttctgggacaataacgagggtcagaattatagaattgtccatgcacagtggaaacctg 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654429 tcttctgggacaataacgagggtcagaattatagaattgtccatgcacagtggaaacctg 112654370
Query: 880 acggagtgcagactcagatggcatcccaggactctgcataccaccgggcgccccccaagg 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654369 acggagtgcagactcagatggcatcccaggactctgcataccaccgggcgccccccaagg 112654310
Query: 940 ccgagttggagtcgccagtctttggcagcccaaggctggccagtgggctcttcccagagt 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654309 ccgagttggagtcgccagtctttggcagcccaaggctggccagtgggctcttcccagagt 112654250
Query: 1000 ggcagagctgggggagggtggagaacttggcctcttatcggtgaacgaagcaatccagtg 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654249 ggcagagctgggggagggtggagaacttggcctcttatcggtgaacgaagcaatccagtg 112654190
Query: 1060 accggtcttgaccttatt-cccatgtacatctaggtctatattgctcaatattangaagt 1118
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 112654189 accggtcttgaccttattccccatgtacatctaggtctatattgctcaatattaggaagt 112654130
Query: 1119 cgttgctactttctttccgtangtttaggtttgagctttggagacctgactac 1171
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 112654129 cgttgctactttctttccgtaggtttaggtttgagctttggagacctgactac 112654077
Score = 1086 bits (548), Expect = 0.0
Identities = 548/548 (100%)
Strand = Plus / Minus
Query: 100 ccagaatgatccaggttttagatccacggcctttgacaagttcagtcatgcccgtggatg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112789284 ccagaatgatccaggttttagatccacggcctttgacaagttcagtcatgcccgtggatg 112789225
Query: 160 tggccatgagactctgcttggctcactcaccacctctgaagagtttcctgggcccttatg 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112789224 tggccatgagactctgcttggctcactcaccacctctgaagagtttcctgggcccttatg 112789165
Query: 220 atgacttccaacgaagaaattttgtgaacaaattaaagcctctgaagccgtgtctcaaca 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112789164 atgacttccaacgaagaaattttgtgaacaaattaaagcctctgaagccgtgtctcaaca 112789105
Query: 280 tgaaacaggaagccaaatcacagaatgattggaagccttcgcacaaccaagccaagaagc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112789104 tgaaacaggaagccaaatcacagaatgattggaagccttcgcacaaccaagccaagaagc 112789045
Query: 340 gggtggtgttcgctgactccaagggcctctccctcaccgccattcacgtcttctcagacc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112789044 gggtggtgttcgctgactccaagggcctctccctcaccgccattcacgtcttctcagacc 112788985
Query: 400 tcccggaagagccagtgtgggatctccagtttgacctcttggaccttaatgatatctcct 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112788984 tcccggaagagccagtgtgggatctccagtttgacctcttggaccttaatgatatctcct 112788925
Query: 460 cgggcttaaaacgccacgaagagaagaacttgattttagatttccctcagccctcagctg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112788924 cgggcttaaaacgccacgaagagaagaacttgattttagatttccctcagccctcagctg 112788865
Query: 520 attacttaagttttcgaaaccacttccagaagaactttgtctgcctggagaactgctctt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112788864 attacttaagttttcgaaaccacttccagaagaactttgtctgcctggagaactgctctt 112788805
Query: 580 tgcaagagcgaatggtgacggggactgtgaaggtgaaaaatgtgagctttgagaagaagg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112788804 tgcaagagcgaatggtgacggggactgtgaaggtgaaaaatgtgagctttgagaagaagg 112788745
Query: 640 ttcagatc 647
||||||||
Sbjct: 112788744 ttcagatc 112788737
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 1 caatccgccagagctgccgcccagtgggtaccgcggggagcctggtgcgaaattacgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112657270 caatccgccagagctgccgcccagtgggtaccgcggggagcctggtgcgaaattacgcag 112657211
Query: 61 gtagtggagtgccgccgcccctctgcctgatgagctgcaccag 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112657210 gtagtggagtgccgccgcccctctgcctgatgagctgcaccag 112657168
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 1 caatccgccagagctgccgcccagtgggtaccgcggggagcctggtgcgaaattacgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112791404 caatccgccagagctgccgcccagtgggtaccgcggggagcctggtgcgaaattacgcag 112791345
Query: 61 gtagtggagtgccgccgcccctctgcctgatgagctgcaccag 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112791344 gtagtggagtgccgccgcccctctgcctgatgagctgcaccag 112791302
>gb|JH118686.1| Sus scrofa unplaced genomic scaffold ChrUScaf1754
Length = 197135
Score = 1649 bits (832), Expect = 0.0
Identities = 844/847 (99%), Gaps = 2/847 (0%)
Strand = Plus / Plus
Query: 100 ccagaatgatccaggttttagatccacggcctttgacaagttcagtcatgcccgtggatg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20838 ccagaatgatccaggttttagatccacggcctttgacaagttcagtcatgcccgtggatg 20897
Query: 160 tggccatgagactctgcttggctcactcaccacctctgaagagtttcctgggcccttatg 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20898 tggccatgagactctgcttggctcactcaccacctctgaagagtttcctgggcccttatg 20957
Query: 220 atgacttccaacgaagaaattttgtgaacaaattaaagcctctgaagccgtgtctcaaca 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20958 atgacttccaacgaagaaattttgtgaacaaattaaagcctctgaagccgtgtctcaaca 21017
Query: 280 tgaaacaggaagccaaatcacagaatgattggaagccttcgcacaaccaagccaa--gaa 337
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 21018 tgaaacaggaagccaaatcacagaatgattggaagccttcgcacagccaagccaagngaa 21077
Query: 338 gcgggtggtgttcgctgactccaagggcctctccctcaccgccattcacgtcttctcaga 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21078 gcgggtggtgttcgctgactccaagggcctctccctcaccgccattcacgtcttctcaga 21137
Query: 398 cctcccggaagagccagtgtgggatctccagtttgacctcttggaccttaatgatatctc 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21138 cctcccggaagagccagtgtgggatctccagtttgacctcttggaccttaatgatatctc 21197
Query: 458 ctcgggcttaaaacgccacgaagagaagaacttgattttagatttccctcagccctcagc 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21198 ctcgggcttaaaacgccacgaagagaagaacttgattttagatttccctcagccctcagc 21257
Query: 518 tgattacttaagttttcgaaaccacttccagaagaactttgtctgcctggagaactgctc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21258 tgattacttaagttttcgaaaccacttccagaagaactttgtctgcctggagaactgctc 21317
Query: 578 tttgcaagagcgaatggtgacggggactgtgaaggtgaaaaatgtgagctttgagaagaa 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21318 tttgcaagagcgaatggtgacggggactgtgaaggtgaaaaatgtgagctttgagaagaa 21377
Query: 638 ggttcagatccggatcacttttgatacctggcagaactacaccgacgtggactgcgtcta 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21378 ggttcagatccggatcacttttgatacctggcagaactacaccgacgtggactgcgtcta 21437
Query: 698 catgaagaatatgtacggtggctcagagagtgacactttctcgtttgccattgacctacc 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21438 catgaagaatatgtacggtggctcagagagtgacactttctcgtttgccattgacctacc 21497
Query: 758 cgctgtgatcccaacaaaggagaaaattgagttctgcatctcgtaccatgccaacgggca 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21498 cgctgtgatcccaacaaaggagaaaattgagttctgcatctcgtaccatgccaacgggca 21557
Query: 818 ggtcttctgggacaataacgagggtcagaattatagaattgtccatgcacagtggaaacc 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21558 ggtcttctgggacaataacgagggtcagaattatagaattgtccatgcacagtggaaacc 21617
Query: 878 tgacggagtgcagactcagatggcatcccaggactctgcataccaccgggcgccccccaa 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21618 tgacggagtgcagactcagatggcatcccaggactctgcataccaccgggcgccccccaa 21677
Query: 938 ggccgag 944
|||||||
Sbjct: 21678 ggccgag 21684
Score = 337 bits (170), Expect = 8e-90
Identities = 181/184 (98%), Gaps = 1/184 (0%)
Strand = Plus / Plus
Query: 989 cttcccagagtggcagagctgggggagggtggagaacttggcctcttatcggtgaacgaa 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21785 cttcccagagtggcagagctgggggagggtggagaacttggcctcttatcggtgaacgaa 21844
Query: 1049 gcaatccagtgaccggtcttgaccttatt-cccatgtacatctaggtctatattgctcaa 1107
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 21845 gcaatccagtgaccggtcttgaccttattccccatgtacatctaggtctatattgctcaa 21904
Query: 1108 tattangaagtcgttgctactttctttccgtangtttaggtttgagctttggagacctga 1167
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 21905 tattaggaagtcgttgctactttctttccgtaggtttaggtttgagctttggagacctga 21964
Query: 1168 ctac 1171
||||
Sbjct: 21965 ctac 21968
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 2 aatccgccagagctgccgcccagtgggtaccgcggggagcctggtgcgaaattacgcagg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18644 aatccgccagagctgccgcccagtgggtaccgcggggagcctggtgcgaaattacgcagg 18703
Query: 62 tagtggagtgccgccgcccctctgcctgatgagctgcaccag 103
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18704 tagtggagtgccgccgcccctctgcctgatgagctgcaccag 18745
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,342,929
Number of extensions: 197
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 7
Length of query: 1171
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1150
Effective length of database: 2,808,413,156
Effective search space: 3229675129400
Effective search space used: 3229675129400
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)