Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013408
(909 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848805.1| PREDICTED: similar to RAB17, member RAS oncogen... 280 1e-75
Alignment gi|NP_001003261.1| ras-related protein Rab-5C [Canis lupus fami... 141 7e-34
Alignment gi|NP_001003317.1| ras-related protein Rab-5A [Canis lupus fami... 140 2e-33
Alignment gi|XP_531627.2| PREDICTED: similar to RAB5B, member RAS oncogen... 135 7e-32
Alignment gi|XP_856128.1| PREDICTED: similar to RAB5B, member RAS oncogen... 131 8e-31
Alignment gi|XP_853648.1| PREDICTED: similar to RAB26, member RAS oncogen... 125 4e-29
Alignment gi|NP_001003318.1| ras-related protein Rab-2A [Canis lupus fami... 124 1e-28
Alignment gi|XP_538000.2| PREDICTED: similar to RAB2, member RAS oncogene... 123 3e-28
Alignment gi|XP_540417.2| PREDICTED: similar to Ras-related protein Rab-3... 123 3e-28
Alignment gi|XP_850610.1| PREDICTED: similar to Ras-related protein Rab-3... 123 3e-28
>ref|XP_848805.1| PREDICTED: similar to RAB17, member RAS oncogene family [Canis
familiaris].
Length = 213
Score = 280 bits (717), Expect = 1e-75
Identities = 141/214 (65%), Positives = 156/214 (72%)
Frame = +3
Query: 114 MAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILPTVGCAFFTKVV 293
MAQA+G PCPG AP QPCVF A RYVKNDFKSILPTVGCAFFTKVV
Sbjct: 1 MAQAEGVPCPGAAPGQPCVFKLVLLGSGSVGKSSLALRYVKNDFKSILPTVGCAFFTKVV 60
Query: 294 DLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLEEEF 473
+LGA SLK EIWDTAGQEKYHS+CHLYFRGANAAL+VYD+TRKDSF KAQQWL+DLE +
Sbjct: 61 ELGAVSLKFEIWDTAGQEKYHSICHLYFRGANAALLVYDITRKDSFCKAQQWLQDLERQV 120
Query: 474 RLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIAQEL 653
G+VVVMLVGNK DLG++REV F+EGKEFAESK LLFME SAKLNHQVTE F A+A+EL
Sbjct: 121 PAGEVVVMLVGNKTDLGEQREVTFQEGKEFAESKRLLFMEASAKLNHQVTEVFSALAREL 180
Query: 654 WXXXXXXXXXXXXXXXXXXXXXXXPSAQARCCAR 755
P+ ARCCA+
Sbjct: 181 -LRREEGKQGRPQRGEAGLARSGVPAGPARCCAQ 213
>ref|NP_001003261.1| ras-related protein Rab-5C [Canis lupus familiaris].
Length = 216
Score = 141 bits (356), Expect = 7e-34
Identities = 80/218 (36%), Positives = 116/218 (53%), Gaps = 1/218 (0%)
Frame = +3
Query: 102 AERGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAF 278
A RG A P G ++ C F R+VK F T+G AF
Sbjct: 2 AGRGGAARPNGPAAG---NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAF 58
Query: 279 FTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKD 458
T+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T D+F +A+ W+K+
Sbjct: 59 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 118
Query: 459 LEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGA 638
L+ + ++V+ L GNK DL +R V F+E + +A+ LLFMETSAK V E F A
Sbjct: 119 LQRQ-ASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMA 177
Query: 639 IAQELWXXXXXXXXXXXXXXXXXXXXXXXPSAQARCCA 752
IA++L P+++++CC+
Sbjct: 178 IAKKLPKNEPQNAAGAPSRNRGVDLQENSPASRSQCCS 215
>ref|NP_001003317.1| ras-related protein Rab-5A [Canis lupus familiaris].
Length = 215
Score = 140 bits (353), Expect = 2e-33
Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 1/185 (0%)
Frame = +3
Query: 102 AERGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAF 278
A RG + +G P T ++ C F R+VK F T+G AF
Sbjct: 2 ANRGATRPNG---PNTG-NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF 57
Query: 279 FTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKD 458
T+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T ++SF +A+ W+K+
Sbjct: 58 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 117
Query: 459 LEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGA 638
L+ + ++V+ L GNK DL +R V F+E + +A+ LLFMETSAK + V E F A
Sbjct: 118 LQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 176
Query: 639 IAQEL 653
IA++L
Sbjct: 177 IAKKL 181
>ref|XP_531627.2| PREDICTED: similar to RAB5B, member RAS oncogene family isoform 1
[Canis familiaris].
Length = 215
Score = 135 bits (339), Expect = 7e-32
Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 1/183 (0%)
Frame = +3
Query: 108 RGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAFFT 284
R A+ +G P S+ C F R+VK F T+G AF T
Sbjct: 4 RSTARPNGQP----QASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 59
Query: 285 KVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLE 464
+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T +++F +A+ W+K+L+
Sbjct: 60 QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ 119
Query: 465 EEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIA 644
+ +V+ L GNK DL +R V +EE + +A+ LLFMETSAK V + F AIA
Sbjct: 120 RQ-ASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIA 178
Query: 645 QEL 653
++L
Sbjct: 179 KKL 181
>ref|XP_856128.1| PREDICTED: similar to RAB5B, member RAS oncogene family isoform 3
[Canis familiaris].
Length = 222
Score = 131 bits (330), Expect = 8e-31
Identities = 72/181 (39%), Positives = 104/181 (57%), Gaps = 1/181 (0%)
Frame = +3
Query: 108 RGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAFFT 284
R A+ +G P S+ C F R+VK F T+G AF T
Sbjct: 4 RSTARPNGQP----QASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 59
Query: 285 KVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLE 464
+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T +++F +A+ W+K+L+
Sbjct: 60 QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ 119
Query: 465 EEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIA 644
+ +V+ L GNK DL +R V +EE + +A+ LLFMETSAK V + F AI
Sbjct: 120 RQ-ASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIG 178
Query: 645 Q 647
+
Sbjct: 179 K 179
>ref|XP_853648.1| PREDICTED: similar to RAB26, member RAS oncogene family [Canis
familiaris].
Length = 244
Score = 125 bits (315), Expect = 4e-29
Identities = 66/135 (48%), Positives = 93/135 (68%)
Frame = +3
Query: 249 SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDS 428
+ + TVG F KV+D+ +KL+IWDTAGQE++ SV H Y+R A+A L++YDVT K S
Sbjct: 80 TFISTVGIDFRNKVLDVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS 139
Query: 429 FLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKL 608
F Q WL ++ +E+ +VV+ML+GNK+D +ER V ++G++ A+ GL FMETSAK
Sbjct: 140 FDNIQAWLTEI-QEYAQHNVVLMLLGNKVDSAQERVVKRKDGEKLAKEYGLPFMETSAKT 198
Query: 609 NHQVTEAFGAIAQEL 653
V AF AIA+EL
Sbjct: 199 GLNVDLAFTAIAKEL 213
>ref|NP_001003318.1| ras-related protein Rab-2A [Canis lupus familiaris].
Length = 212
Score = 124 bits (311), Expect = 1e-28
Identities = 61/132 (46%), Positives = 86/132 (65%)
Frame = +3
Query: 261 TVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKA 440
T+G F +++ + +KL+IWDTAGQE + S+ Y+RGA AL+VYD+TR+D+F
Sbjct: 38 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHL 97
Query: 441 QQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQV 620
WL+D + ++V+ML+GNK DL REV EEG+ FA GL+FMETSAK V
Sbjct: 98 TTWLEDARQHSN-SNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNV 156
Query: 621 TEAFGAIAQELW 656
EAF A+E++
Sbjct: 157 EEAFINTAKEIY 168
>ref|XP_538000.2| PREDICTED: similar to RAB2, member RAS oncogene family [Canis
familiaris].
Length = 271
Score = 123 bits (308), Expect = 3e-28
Identities = 61/132 (46%), Positives = 86/132 (65%)
Frame = +3
Query: 261 TVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKA 440
T+G F +++ + +KL+IWDTAGQE + S+ Y+RGA AL+VYD+TR+D+F
Sbjct: 96 TIGVEFGARMITIDGKRIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHL 155
Query: 441 QQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQV 620
WL+D + ++V+ML+GNK DL REV EEG+ FA GL+FMETSAK V
Sbjct: 156 TTWLED-ARHYSNSNMVIMLIGNKSDLESRREVNKEEGEAFAREHGLIFMETSAKTASNV 214
Query: 621 TEAFGAIAQELW 656
EAF A+E++
Sbjct: 215 EEAFINTAKEIY 226
>ref|XP_540417.2| PREDICTED: similar to Ras-related protein Rab-37 [Canis
familiaris].
Length = 223
Score = 123 bits (308), Expect = 3e-28
Identities = 64/135 (47%), Positives = 87/135 (64%)
Frame = +3
Query: 249 SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDS 428
+ + TVG F KVV + +KL+IWDTAGQE++ SV H Y+R A A L++YD+T K S
Sbjct: 58 NFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSS 117
Query: 429 FLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKL 608
F + WL ++ E+ DVV+ML+GNK D+ ER + E+G+ A G+ FMETSAK
Sbjct: 118 FDNIRAWLTEI-HEYAQRDVVIMLLGNKADVSNERVIRSEDGETLAREYGVPFMETSAKT 176
Query: 609 NHQVTEAFGAIAQEL 653
V AF AIA+EL
Sbjct: 177 GMNVELAFLAIAKEL 191
>ref|XP_850610.1| PREDICTED: similar to Ras-related protein Rab-31 (Rab-22B) [Canis
familiaris].
Length = 194
Score = 123 bits (308), Expect = 3e-28
Identities = 62/144 (43%), Positives = 98/144 (68%), Gaps = 1/144 (0%)
Frame = +3
Query: 225 RYVKNDFK-SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALV 401
R+V++ F +I PT+G +F TK V G K IWDTAGQE++HS+ +Y+RG+ AA++
Sbjct: 24 RFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI 83
Query: 402 VYDVTRKDSFLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGL 581
VYD+T++DSF ++W+K+L+E ++V+ + GNK DL REV ++ KE+AES G
Sbjct: 84 VYDITKQDSFHTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGA 142
Query: 582 LFMETSAKLNHQVTEAFGAIAQEL 653
+ +ETSAK + E F I++++
Sbjct: 143 VVVETSAKNAINIEELFQGISRQI 166
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,426,849
Number of extensions: 1071812
Number of successful extensions: 7521
Number of sequences better than 1.0e-05: 127
Number of HSP's gapped: 7311
Number of HSP's successfully gapped: 127
Length of query: 303
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 201
Effective length of database: 15,474,232
Effective search space: 3110320632
Effective search space used: 3110320632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013408
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013408
(909 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002686627.1| PREDICTED: RAB17, member RAS oncogene family... 182 4e-50
Alignment gi|NP_001029915.1| ras-related protein Rab-5C [Bos taurus]. 142 3e-34
Alignment gi|NP_001069654.1| ras-related protein Rab-5A [Bos taurus]. 140 2e-33
Alignment gi|NP_001193120.1| ras-related protein Rab-5B [Bos taurus]. 135 6e-32
Alignment gi|XP_002687629.1| PREDICTED: RAB5B, member RAS oncogene family... 135 6e-32
Alignment gi|NP_001039674.1| ras-related protein Rab-26 [Bos taurus]. 128 8e-30
Alignment gi|NP_001070412.1| ras-related protein Rab-31 [Bos taurus]. 123 3e-28
Alignment gi|NP_001180153.1| ras-related protein Rab-37 [Bos taurus]. 123 3e-28
Alignment gi|NP_001017936.1| ras-related protein Rab-25 [Bos taurus]. 123 3e-28
Alignment gi|XP_002696235.1| PREDICTED: RAB37, member RAS oncogene family... 123 3e-28
>ref|XP_002686627.1| PREDICTED: RAB17, member RAS oncogene family-like [Bos taurus].
Length = 403
Score = 182 bits (463), Expect(3) = 4e-50
Identities = 104/185 (56%), Positives = 117/185 (63%), Gaps = 8/185 (4%)
Frame = +3
Query: 111 GMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILPTVG------- 269
GMAQ +G P PG A QPC+F A RYVKNDFKSILPTVG
Sbjct: 201 GMAQVNGVPRPGAALGQPCIFKLVLLGSGSVGKSSLALRYVKNDFKSILPTVGWGQRGSG 260
Query: 270 -CAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQ 446
C + A +L + A + H GANAAL+VYD+TRKDSF KAQQ
Sbjct: 261 PCFASPRRAACHMARFRLSADENAPTCRLPQ--HSPETGANAALLVYDITRKDSFCKAQQ 318
Query: 447 WLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTE 626
WLKDLEEEF G+VVVMLVGNK DL +EREV FEEGKEFAESKGLLFMETSAK N+QV +
Sbjct: 319 WLKDLEEEFHPGEVVVMLVGNKTDLEEEREVTFEEGKEFAESKGLLFMETSAKRNYQVAD 378
Query: 627 AFGAI 641
F A+
Sbjct: 379 VFNAV 383
Score = 32.3 bits (72), Expect(3) = 4e-50
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1
Query: 22 GRKGTQAGARQDPVMTGC 75
G +GTQ GA DPVMTGC
Sbjct: 152 GERGTQVGALGDPVMTGC 169
Score = 22.7 bits (47), Expect(3) = 4e-50
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 2 LSSGQKWGERGHRQG 46
L QKWGERG + G
Sbjct: 145 LPRDQKWGERGTQVG 159
>ref|NP_001029915.1| ras-related protein Rab-5C [Bos taurus].
Length = 216
Score = 142 bits (359), Expect = 3e-34
Identities = 81/218 (37%), Positives = 116/218 (53%), Gaps = 1/218 (0%)
Frame = +3
Query: 102 AERGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAF 278
A RG A P G ++ C F R+VK F T+G AF
Sbjct: 2 AGRGGAARPNGPAAG---NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAF 58
Query: 279 FTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKD 458
T+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T D+F +A+ W+K+
Sbjct: 59 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 118
Query: 459 LEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGA 638
L+ + ++V+ L GNK DL +R V F+E + +AE LLFMETSAK V E F A
Sbjct: 119 LQRQ-ASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMA 177
Query: 639 IAQELWXXXXXXXXXXXXXXXXXXXXXXXPSAQARCCA 752
IA++L P+++++CC+
Sbjct: 178 IAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCS 215
>ref|NP_001069654.1| ras-related protein Rab-5A [Bos taurus].
Length = 215
Score = 140 bits (353), Expect = 2e-33
Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 1/185 (0%)
Frame = +3
Query: 102 AERGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAF 278
A RG + +G P T ++ C F R+VK F T+G AF
Sbjct: 2 ANRGATRPNG---PNTG-NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF 57
Query: 279 FTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKD 458
T+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T ++SF +A+ W+K+
Sbjct: 58 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 117
Query: 459 LEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGA 638
L+ + ++V+ L GNK DL +R V F+E + +A+ LLFMETSAK + V E F A
Sbjct: 118 LQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 176
Query: 639 IAQEL 653
IA++L
Sbjct: 177 IAKKL 181
>ref|NP_001193120.1| ras-related protein Rab-5B [Bos taurus].
Length = 215
Score = 135 bits (339), Expect = 6e-32
Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 1/183 (0%)
Frame = +3
Query: 108 RGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAFFT 284
R A+ +G P S+ C F R+VK F T+G AF T
Sbjct: 4 RSTARPNGQP----QASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 59
Query: 285 KVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLE 464
+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T +++F +A+ W+K+L+
Sbjct: 60 QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ 119
Query: 465 EEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIA 644
+ +V+ L GNK DL +R V +EE + +A+ LLFMETSAK V + F AIA
Sbjct: 120 RQ-ASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIA 178
Query: 645 QEL 653
++L
Sbjct: 179 KKL 181
>ref|XP_002687629.1| PREDICTED: RAB5B, member RAS oncogene family-like [Bos taurus].
Length = 215
Score = 135 bits (339), Expect = 6e-32
Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 1/183 (0%)
Frame = +3
Query: 108 RGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAFFT 284
R A+ +G P S+ C F R+VK F T+G AF T
Sbjct: 4 RSTARPNGQP----QASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 59
Query: 285 KVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLE 464
+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T +++F +A+ W+K+L+
Sbjct: 60 QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ 119
Query: 465 EEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIA 644
+ +V+ L GNK DL +R V +EE + +A+ LLFMETSAK V + F AIA
Sbjct: 120 RQ-ASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIA 178
Query: 645 QEL 653
++L
Sbjct: 179 KKL 181
>ref|NP_001039674.1| ras-related protein Rab-26 [Bos taurus].
Length = 256
Score = 128 bits (321), Expect = 8e-30
Identities = 68/135 (50%), Positives = 92/135 (68%)
Frame = +3
Query: 249 SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDS 428
+ + TVG F KVVD+ +KL+IWDTAGQE++ SV H Y+R A+A L++YDVT K S
Sbjct: 92 TFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS 151
Query: 429 FLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKL 608
F Q WL +++E + DVV+ML+GNK+D +ER V E+ ++ A+ GL FMETSAK
Sbjct: 152 FDSIQAWLTEIQEHAQ-DDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKT 210
Query: 609 NHQVTEAFGAIAQEL 653
V AF AIA+EL
Sbjct: 211 GLNVDLAFTAIAKEL 225
>ref|NP_001070412.1| ras-related protein Rab-31 [Bos taurus].
Length = 195
Score = 123 bits (308), Expect = 3e-28
Identities = 62/144 (43%), Positives = 98/144 (68%), Gaps = 1/144 (0%)
Frame = +3
Query: 225 RYVKNDFK-SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALV 401
R+V++ F +I PT+G +F TK V G K IWDTAGQE++HS+ +Y+RG+ AA++
Sbjct: 25 RFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI 84
Query: 402 VYDVTRKDSFLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGL 581
VYD+T++DSF ++W+K+L+E ++V+ + GNK DL REV ++ KE+AES G
Sbjct: 85 VYDITKQDSFHTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGA 143
Query: 582 LFMETSAKLNHQVTEAFGAIAQEL 653
+ +ETSAK + E F I++++
Sbjct: 144 VVVETSAKNAINIEELFQGISRQI 167
>ref|NP_001180153.1| ras-related protein Rab-37 [Bos taurus].
Length = 216
Score = 123 bits (308), Expect = 3e-28
Identities = 65/135 (48%), Positives = 86/135 (63%)
Frame = +3
Query: 249 SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDS 428
S TVG F KVV + +KL+IWDTAGQE++ SV H Y+R A A L++YD+T K S
Sbjct: 51 SFSATVGIGFTNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSS 110
Query: 429 FLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKL 608
F + WL ++ E+ DVV+ML+GNK D+ ER + E+G+ A G+ FMETSAK
Sbjct: 111 FDNIRAWLTEI-HEYAQRDVVIMLLGNKADVSTERVIRSEDGEMLAREYGVPFMETSAKT 169
Query: 609 NHQVTEAFGAIAQEL 653
V AF AIA+EL
Sbjct: 170 GMNVELAFLAIAKEL 184
>ref|NP_001017936.1| ras-related protein Rab-25 [Bos taurus].
Length = 213
Score = 123 bits (308), Expect = 3e-28
Identities = 63/145 (43%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Frame = +3
Query: 225 RYVKNDFK-SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALV 401
R+ +N+F T+G F T+ V LG A++K +IWDTAG E+Y ++ Y+RGA AL+
Sbjct: 31 RFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALL 90
Query: 402 VYDVTRKDSFLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGL 581
V+D+T+ ++ ++WLK+L + +VVMLVGNK DL + REV EE + FAE+ GL
Sbjct: 91 VFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKSDLSQSREVPTEEARMFAENNGL 149
Query: 582 LFMETSAKLNHQVTEAFGAIAQELW 656
LF+ETSA + V AF + +E++
Sbjct: 150 LFLETSALDSTNVELAFETVLKEIF 174
>ref|XP_002696235.1| PREDICTED: RAB37, member RAS oncogene family-like [Bos taurus].
Length = 216
Score = 123 bits (308), Expect = 3e-28
Identities = 65/135 (48%), Positives = 86/135 (63%)
Frame = +3
Query: 249 SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDS 428
S TVG F KVV + +KL+IWDTAGQE++ SV H Y+R A A L++YD+T K S
Sbjct: 51 SFSATVGIGFTNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSS 110
Query: 429 FLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKL 608
F + WL ++ E+ DVV+ML+GNK D+ ER + E+G+ A G+ FMETSAK
Sbjct: 111 FDNIRAWLTEI-HEYAQRDVVIMLLGNKADVSTERVIRSEDGEMLAREYGVPFMETSAKT 169
Query: 609 NHQVTEAFGAIAQEL 653
V AF AIA+EL
Sbjct: 170 GMNVELAFLAIAKEL 184
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,983,824
Number of extensions: 1042931
Number of successful extensions: 7852
Number of sequences better than 1.0e-05: 136
Number of HSP's gapped: 7548
Number of HSP's successfully gapped: 138
Length of query: 303
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,306,398
Effective search space: 2875585998
Effective search space used: 2875585998
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013408
(909 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230879.1| RAB17, member RAS oncogene family [Sus scrof... 341 3e-94
Alignment gi|XP_003360884.1| PREDICTED: ras-related protein Rab-17-like [... 333 8e-92
Alignment gi|XP_003131451.1| PREDICTED: ras-related protein Rab-5C-like [... 142 2e-34
Alignment gi|NP_001116652.1| ras-related protein Rab-5A [Sus scrofa]. 140 1e-33
Alignment gi|XP_003360910.1| PREDICTED: ras-related protein Rab-5B-like [... 134 7e-32
Alignment gi|XP_003124780.1| PREDICTED: ras-related protein Rab-26-like [... 125 2e-29
Alignment gi|XP_001926739.2| PREDICTED: ras-related protein Rab-2A [Sus s... 124 7e-29
Alignment gi|XP_003131277.1| PREDICTED: ras-related protein Rab-37-like i... 123 1e-28
Alignment gi|XP_003131275.1| PREDICTED: ras-related protein Rab-37-like i... 122 2e-28
Alignment gi|NP_001026953.1| ras-related protein Rab-14 [Sus scrofa]. 122 3e-28
>ref|NP_001230879.1| RAB17, member RAS oncogene family [Sus scrofa].
Length = 214
Score = 341 bits (875), Expect = 3e-94
Identities = 175/214 (81%), Positives = 175/214 (81%)
Frame = +3
Query: 114 MAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILPTVGCAFFTKVV 293
MAQADGAPCPGTA SQPCVF AFRYVKNDFKSILPTVGCAFFTKVV
Sbjct: 1 MAQADGAPCPGTALSQPCVFKLVLLGSGSVGKSSLAFRYVKNDFKSILPTVGCAFFTKVV 60
Query: 294 DLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLEEEF 473
DLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLEEEF
Sbjct: 61 DLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLEEEF 120
Query: 474 RLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIAQEL 653
RLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIAQEL
Sbjct: 121 RLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIAQEL 180
Query: 654 WXXXXXXXXXXXXXXXXXXXXXXXPSAQARCCAR 755
W PSAQARCCAR
Sbjct: 181 WRREERKEDQQQQQRDAQLDLNQRPSAQARCCAR 214
>ref|XP_003360884.1| PREDICTED: ras-related protein Rab-17-like [Sus scrofa].
Length = 214
Score = 333 bits (854), Expect = 8e-92
Identities = 175/214 (81%), Positives = 176/214 (82%)
Frame = +3
Query: 114 MAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILPTVGCAFFTKVV 293
MAQADGAPCPGTAPSQPCVF FRYVKNDFKSILPTVGCAFFTKVV
Sbjct: 1 MAQADGAPCPGTAPSQPCVFKLVLLGSGSVXXXXXXFRYVKNDFKSILPTVGCAFFTKVV 60
Query: 294 DLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLEEEF 473
DLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLEEEF
Sbjct: 61 DLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLEEEF 120
Query: 474 RLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIAQEL 653
RLGDVVVMLVGNKLDLGKER +EGKEFAESKGLLFMETSAKLNHQVTEAFGAIAQEL
Sbjct: 121 RLGDVVVMLVGNKLDLGKERXXXXQEGKEFAESKGLLFMETSAKLNHQVTEAFGAIAQEL 180
Query: 654 WXXXXXXXXXXXXXXXXXXXXXXXPSAQARCCAR 755
W PSAQARCCAR
Sbjct: 181 WCREERKEDQQQQQRDAQLDLNQRPSAQARCCAR 214
>ref|XP_003131451.1| PREDICTED: ras-related protein Rab-5C-like [Sus scrofa].
Length = 216
Score = 142 bits (359), Expect = 2e-34
Identities = 81/218 (37%), Positives = 116/218 (53%), Gaps = 1/218 (0%)
Frame = +3
Query: 102 AERGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAF 278
A RG A P G ++ C F R+VK F T+G AF
Sbjct: 2 AGRGGAARPNGPAAG---NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAF 58
Query: 279 FTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKD 458
T+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T D+F +A+ W+K+
Sbjct: 59 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 118
Query: 459 LEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGA 638
L+ + ++V+ L GNK DL +R V F+E + +AE LLFMETSAK V E F A
Sbjct: 119 LQRQ-ASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMA 177
Query: 639 IAQELWXXXXXXXXXXXXXXXXXXXXXXXPSAQARCCA 752
IA++L P+++++CC+
Sbjct: 178 IAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCS 215
>ref|NP_001116652.1| ras-related protein Rab-5A [Sus scrofa].
Length = 215
Score = 140 bits (353), Expect = 1e-33
Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 1/185 (0%)
Frame = +3
Query: 102 AERGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAF 278
A RG + +G P T ++ C F R+VK F T+G AF
Sbjct: 2 ANRGATRPNG---PNTG-NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF 57
Query: 279 FTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKD 458
T+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T ++SF +A+ W+K+
Sbjct: 58 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 117
Query: 459 LEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGA 638
L+ + ++V+ L GNK DL +R V F+E + +A+ LLFMETSAK + V E F A
Sbjct: 118 LQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 176
Query: 639 IAQEL 653
IA++L
Sbjct: 177 IAKKL 181
>ref|XP_003360910.1| PREDICTED: ras-related protein Rab-5B-like [Sus scrofa].
Length = 215
Score = 134 bits (337), Expect = 7e-32
Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 1/183 (0%)
Frame = +3
Query: 108 RGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAFFT 284
R A+ +G P S+ C F R+VK F T+G AF T
Sbjct: 4 RSTARPNGQP----QASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 59
Query: 285 KVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLE 464
+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T +++F +A+ W+K+L+
Sbjct: 60 QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ 119
Query: 465 EEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIA 644
+ +V+ L GNK DL +R V +EE + +A+ LLFMETSAK V + F AIA
Sbjct: 120 RQ-ASPSIVIALAGNKADLANKRMVEYEEAQAYADDNTLLFMETSAKTAMNVNDLFLAIA 178
Query: 645 QEL 653
++L
Sbjct: 179 KKL 181
>ref|XP_003124780.1| PREDICTED: ras-related protein Rab-26-like [Sus scrofa].
Length = 256
Score = 125 bits (315), Expect = 2e-29
Identities = 64/135 (47%), Positives = 93/135 (68%)
Frame = +3
Query: 249 SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDS 428
+ + TVG F K++D+ +KL+IWDTAGQE++ SV H Y+R A+A L++YDVT K S
Sbjct: 92 TFISTVGIDFRNKILDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS 151
Query: 429 FLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKL 608
F Q WL ++ +E+ DVV++L+GNK+D +ER V E+G++ A+ GL FMETSA+
Sbjct: 152 FDSIQAWLTEI-QEYAQRDVVLLLLGNKVDSAQERVVRREDGEQLAKEFGLPFMETSART 210
Query: 609 NHQVTEAFGAIAQEL 653
V AF A+A+EL
Sbjct: 211 GLNVDLAFTAVAKEL 225
>ref|XP_001926739.2| PREDICTED: ras-related protein Rab-2A [Sus scrofa].
Length = 212
Score = 124 bits (311), Expect = 7e-29
Identities = 61/132 (46%), Positives = 86/132 (65%)
Frame = +3
Query: 261 TVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKA 440
T+G F +++ + +KL+IWDTAGQE + S+ Y+RGA AL+VYD+TR+D+F
Sbjct: 38 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHL 97
Query: 441 QQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQV 620
WL+D + ++V+ML+GNK DL REV EEG+ FA GL+FMETSAK V
Sbjct: 98 TTWLEDARQHSN-SNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNV 156
Query: 621 TEAFGAIAQELW 656
EAF A+E++
Sbjct: 157 EEAFINTAKEIY 168
>ref|XP_003131277.1| PREDICTED: ras-related protein Rab-37-like isoform 3 [Sus scrofa].
Length = 216
Score = 123 bits (309), Expect = 1e-28
Identities = 65/135 (48%), Positives = 86/135 (63%)
Frame = +3
Query: 249 SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDS 428
S TVG F KVV + +KL+IWDTAGQE++ SV H Y+R A A L++YD+T K S
Sbjct: 51 SFSATVGIGFTNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSS 110
Query: 429 FLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKL 608
F + WL ++ E+ DVV+ML+GNK D+ ER + E+G+ A G+ FMETSAK
Sbjct: 111 FDNIRAWLTEI-HEYAQRDVVIMLLGNKADVSSERVIRSEDGEMLAREYGVPFMETSAKT 169
Query: 609 NHQVTEAFGAIAQEL 653
V AF AIA+EL
Sbjct: 170 GMNVELAFLAIAKEL 184
>ref|XP_003131275.1| PREDICTED: ras-related protein Rab-37-like isoform 1 [Sus scrofa].
Length = 223
Score = 122 bits (307), Expect = 2e-28
Identities = 64/135 (47%), Positives = 87/135 (64%)
Frame = +3
Query: 249 SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDS 428
+ + TVG F KVV + +KL+IWDTAGQE++ SV H Y+R A A L++YD+T K S
Sbjct: 58 TFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSS 117
Query: 429 FLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKL 608
F + WL ++ E+ DVV+ML+GNK D+ ER + E+G+ A G+ FMETSAK
Sbjct: 118 FDNIRAWLTEI-HEYAQRDVVIMLLGNKADVSSERVIRSEDGEMLAREYGVPFMETSAKT 176
Query: 609 NHQVTEAFGAIAQEL 653
V AF AIA+EL
Sbjct: 177 GMNVELAFLAIAKEL 191
>ref|NP_001026953.1| ras-related protein Rab-14 [Sus scrofa].
Length = 215
Score = 122 bits (306), Expect = 3e-28
Identities = 58/145 (40%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Frame = +3
Query: 225 RYVKNDFKSILP-TVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALV 401
++ + F + P T+G F T+++++ +KL+IWDTAGQE++ +V Y+RGA AL+
Sbjct: 30 QFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89
Query: 402 VYDVTRKDSFLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGL 581
VYD+TR+ ++ WL D + V++L+GNK DL +R+V +EE K+FAE GL
Sbjct: 90 VYDITRRSTYNHLSSWLTD-ARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL 148
Query: 582 LFMETSAKLNHQVTEAFGAIAQELW 656
LF+E SAK V +AF A++++
Sbjct: 149 LFLEASAKTGENVEDAFLEAAKKIY 173
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,019,351
Number of extensions: 677269
Number of successful extensions: 5167
Number of sequences better than 1.0e-05: 102
Number of HSP's gapped: 4979
Number of HSP's successfully gapped: 102
Length of query: 303
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,904,026
Effective search space: 1825325330
Effective search space used: 1825325330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013408
(909 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033024.1| ras-related protein Rab-17 [Mus musculus]. 258 4e-69
Alignment gi|NP_001153197.2| ras-related protein Rab-17 [Mus musculus]. 258 4e-69
Alignment gi|NP_077776.2| ras-related protein Rab-5C [Mus musculus]. 141 6e-34
Alignment gi|NP_080163.1| ras-related protein Rab-5A [Mus musculus]. 140 1e-33
Alignment gi|NP_803130.1| ras-related protein Rab-5B isoform 1 [Mus muscu... 135 6e-32
Alignment gi|XP_485050.4| PREDICTED: ras-related protein Rab-5B [Mus musc... 135 6e-32
Alignment gi|XP_003086306.1| PREDICTED: ras-related protein Rab-5B [Mus m... 135 6e-32
Alignment gi|NP_796349.1| ras-related protein Rab-26 [Mus musculus]. 128 5e-30
Alignment gi|NP_067493.1| ras-related protein Rab-2A [Mus musculus]. 124 1e-28
Alignment gi|NP_001157225.1| ras-related protein Rab-37 isoform 2 [Mus mu... 124 1e-28
>ref|NP_033024.1| ras-related protein Rab-17 [Mus musculus].
Length = 214
Score = 258 bits (659), Expect = 4e-69
Identities = 133/214 (62%), Positives = 151/214 (70%)
Frame = +3
Query: 114 MAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILPTVGCAFFTKVV 293
MAQA G P TA QP V A RY+K DF ++LPTVGCAFFTKV+
Sbjct: 1 MAQAAGLPQASTASGQPYVSKLVLLGSSSVGKTSLALRYMKQDFSNVLPTVGCAFFTKVL 60
Query: 294 DLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLEEEF 473
DLG++SLKLEIWDTAGQEKY SVCHLYFRGANAAL+VYD+TRKDSF KAQQWL+DLE+EF
Sbjct: 61 DLGSSSLKLEIWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEF 120
Query: 474 RLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIAQEL 653
+ G+VVVMLVGNK DLG+EREV F+EGKEFAESK LLFMETSAKLN+QV+E F +AQEL
Sbjct: 121 QPGEVVVMLVGNKTDLGEEREVTFQEGKEFAESKSLLFMETSAKLNYQVSEIFNTVAQEL 180
Query: 654 WXXXXXXXXXXXXXXXXXXXXXXXPSAQARCCAR 755
P Q +CCAR
Sbjct: 181 LQRAGDTGSSRPQEGEAVALNQEPPIRQRQCCAR 214
>ref|NP_001153197.2| ras-related protein Rab-17 [Mus musculus].
Length = 214
Score = 258 bits (659), Expect = 4e-69
Identities = 133/214 (62%), Positives = 151/214 (70%)
Frame = +3
Query: 114 MAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILPTVGCAFFTKVV 293
MAQA G P TA QP V A RY+K DF ++LPTVGCAFFTKV+
Sbjct: 1 MAQAAGLPQASTASGQPYVSKLVLLGSSSVGKTSLALRYMKQDFSNVLPTVGCAFFTKVL 60
Query: 294 DLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLEEEF 473
DLG++SLKLEIWDTAGQEKY SVCHLYFRGANAAL+VYD+TRKDSF KAQQWL+DLE+EF
Sbjct: 61 DLGSSSLKLEIWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEF 120
Query: 474 RLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIAQEL 653
+ G+VVVMLVGNK DLG+EREV F+EGKEFAESK LLFMETSAKLN+QV+E F +AQEL
Sbjct: 121 QPGEVVVMLVGNKTDLGEEREVTFQEGKEFAESKSLLFMETSAKLNYQVSEIFNTVAQEL 180
Query: 654 WXXXXXXXXXXXXXXXXXXXXXXXPSAQARCCAR 755
P Q +CCAR
Sbjct: 181 LQRAGDTGSSRPQEGEAVALNQEPPIRQRQCCAR 214
>ref|NP_077776.2| ras-related protein Rab-5C [Mus musculus].
Length = 216
Score = 141 bits (356), Expect = 6e-34
Identities = 80/218 (36%), Positives = 116/218 (53%), Gaps = 1/218 (0%)
Frame = +3
Query: 102 AERGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAF 278
A RG A P G ++ C F R+VK F T+G AF
Sbjct: 2 AGRGGAARPNGPAAG---NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAF 58
Query: 279 FTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKD 458
T+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T D+F +A+ W+K+
Sbjct: 59 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 118
Query: 459 LEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGA 638
L+ + ++V+ L GNK DL +R V F+E + +A+ LLFMETSAK V E F A
Sbjct: 119 LQRQ-ASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMA 177
Query: 639 IAQELWXXXXXXXXXXXXXXXXXXXXXXXPSAQARCCA 752
IA++L P+++++CC+
Sbjct: 178 IAKKLPKNEPQNAAGAPGRTRGVDLQESNPASRSQCCS 215
>ref|NP_080163.1| ras-related protein Rab-5A [Mus musculus].
Length = 215
Score = 140 bits (353), Expect = 1e-33
Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 1/185 (0%)
Frame = +3
Query: 102 AERGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAF 278
A RG + +G P T ++ C F R+VK F T+G AF
Sbjct: 2 ANRGATRPNG---PNTG-NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF 57
Query: 279 FTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKD 458
T+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T ++SF +A+ W+K+
Sbjct: 58 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 117
Query: 459 LEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGA 638
L+ + ++V+ L GNK DL +R V F+E + +A+ LLFMETSAK + V E F A
Sbjct: 118 LQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 176
Query: 639 IAQEL 653
IA++L
Sbjct: 177 IAKKL 181
>ref|NP_803130.1| ras-related protein Rab-5B isoform 1 [Mus musculus].
Length = 215
Score = 135 bits (339), Expect = 6e-32
Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 1/183 (0%)
Frame = +3
Query: 108 RGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAFFT 284
R A+ +G P S+ C F R+VK F T+G AF T
Sbjct: 4 RSTARPNGQP----QASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 59
Query: 285 KVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLE 464
+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T +++F +A+ W+K+L+
Sbjct: 60 QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ 119
Query: 465 EEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIA 644
+ +V+ L GNK DL +R V +EE + +A+ LLFMETSAK V + F AIA
Sbjct: 120 RQ-ASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIA 178
Query: 645 QEL 653
++L
Sbjct: 179 KKL 181
>ref|XP_485050.4| PREDICTED: ras-related protein Rab-5B [Mus musculus].
Length = 280
Score = 135 bits (339), Expect = 6e-32
Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 1/183 (0%)
Frame = +3
Query: 108 RGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAFFT 284
R A+ +G P S+ C F R+VK F T+G AF T
Sbjct: 69 RSTARPNGQP----QASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 124
Query: 285 KVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLE 464
+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T +++F +A+ W+K+L+
Sbjct: 125 QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ 184
Query: 465 EEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIA 644
+ +V+ L GNK DL +R V +EE + +A+ LLFMETSAK V + F AIA
Sbjct: 185 RQ-ASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIA 243
Query: 645 QEL 653
++L
Sbjct: 244 KKL 246
>ref|XP_003086306.1| PREDICTED: ras-related protein Rab-5B [Mus musculus].
Length = 280
Score = 135 bits (339), Expect = 6e-32
Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 1/183 (0%)
Frame = +3
Query: 108 RGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAFFT 284
R A+ +G P S+ C F R+VK F T+G AF T
Sbjct: 69 RSTARPNGQP----QASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 124
Query: 285 KVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLE 464
+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T +++F +A+ W+K+L+
Sbjct: 125 QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ 184
Query: 465 EEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIA 644
+ +V+ L GNK DL +R V +EE + +A+ LLFMETSAK V + F AIA
Sbjct: 185 RQ-ASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIA 243
Query: 645 QEL 653
++L
Sbjct: 244 KKL 246
>ref|NP_796349.1| ras-related protein Rab-26 [Mus musculus].
Length = 260
Score = 128 bits (322), Expect = 5e-30
Identities = 66/135 (48%), Positives = 94/135 (69%)
Frame = +3
Query: 249 SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDS 428
+ + TVG F KV+D+ +KL+IWDTAGQE++ SV H Y+R A+A L++YD+T KDS
Sbjct: 96 TFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDS 155
Query: 429 FLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKL 608
F Q WL ++ +E+ DVV+ML+GNK+D ++R V E+G++ A+ GL FMETSA+
Sbjct: 156 FDNIQAWLTEI-QEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSART 214
Query: 609 NHQVTEAFGAIAQEL 653
V AF AIA+EL
Sbjct: 215 GLNVDLAFTAIAKEL 229
>ref|NP_067493.1| ras-related protein Rab-2A [Mus musculus].
Length = 212
Score = 124 bits (311), Expect = 1e-28
Identities = 61/132 (46%), Positives = 86/132 (65%)
Frame = +3
Query: 261 TVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKA 440
T+G F +++ + +KL+IWDTAGQE + S+ Y+RGA AL+VYD+TR+D+F
Sbjct: 38 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHL 97
Query: 441 QQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQV 620
WL+D + ++V+ML+GNK DL REV EEG+ FA GL+FMETSAK V
Sbjct: 98 TTWLEDARQHSN-SNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNV 156
Query: 621 TEAFGAIAQELW 656
EAF A+E++
Sbjct: 157 EEAFINTAKEIY 168
>ref|NP_001157225.1| ras-related protein Rab-37 isoform 2 [Mus musculus].
Length = 216
Score = 124 bits (310), Expect = 1e-28
Identities = 65/135 (48%), Positives = 87/135 (64%)
Frame = +3
Query: 249 SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDS 428
S TVG F KVV + A +KL+IWDTAGQE++ SV H Y+R A A L++YD+T + S
Sbjct: 51 SFSATVGIGFTNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSS 110
Query: 429 FLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKL 608
F + WL ++ E+ DVV+ML+GNK D+ ER + E+G+ A G+ FMETSAK
Sbjct: 111 FDNIRAWLTEI-HEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKT 169
Query: 609 NHQVTEAFGAIAQEL 653
V AF AIA+EL
Sbjct: 170 GMNVELAFLAIAKEL 184
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,951,250
Number of extensions: 845072
Number of successful extensions: 5870
Number of sequences better than 1.0e-05: 117
Number of HSP's gapped: 5582
Number of HSP's successfully gapped: 117
Length of query: 303
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 202
Effective length of database: 12,583,923
Effective search space: 2541952446
Effective search space used: 2541952446
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013408
(909 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071894.1| ras-related protein Rab-17 [Homo sapiens]. 271 8e-73
Alignment gi|NP_958842.1| ras-related protein Rab-5C isoform a [Homo sapi... 141 7e-34
Alignment gi|NP_004574.2| ras-related protein Rab-5C isoform b [Homo sapi... 141 7e-34
Alignment gi|NP_004153.2| ras-related protein Rab-5A [Homo sapiens]. 140 2e-33
Alignment gi|NP_002859.1| ras-related protein Rab-5B [Homo sapiens]. 135 7e-32
Alignment gi|NP_055168.2| ras-related protein Rab-26 [Homo sapiens]. 125 7e-29
Alignment gi|NP_006859.2| ras-related protein Rab-31 [Homo sapiens]. 124 1e-28
Alignment gi|NP_002856.1| ras-related protein Rab-2A isoform a [Homo sapi... 124 1e-28
Alignment gi|NP_783865.1| ras-related protein Rab-37 isoform 3 [Homo sapi... 123 3e-28
Alignment gi|NP_001229573.1| ras-related protein Rab-2A isoform b [Homo s... 122 3e-28
>ref|NP_071894.1| ras-related protein Rab-17 [Homo sapiens].
Length = 212
Score = 271 bits (692), Expect = 8e-73
Identities = 141/213 (66%), Positives = 154/213 (72%)
Frame = +3
Query: 114 MAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILPTVGCAFFTKVV 293
MAQA P P APSQP VF A RYVKNDFKSILPTVGCAFFTKVV
Sbjct: 1 MAQAHRTPQPRAAPSQPRVFKLVLLGSGSVGKSSLALRYVKNDFKSILPTVGCAFFTKVV 60
Query: 294 DLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLEEEF 473
D+GA SLKLEIWDTAGQEKYHSVCHLYFRGANAAL+VYD+TRKDSFLKAQQWLKDLEEE
Sbjct: 61 DVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEEL 120
Query: 474 RLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIAQEL 653
G+V+VMLVGNK DL +EREV F+EGKEFA+S+ LLFMETSAKLNHQV+E F +AQEL
Sbjct: 121 HPGEVLVMLVGNKTDLSQEREVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQEL 180
Query: 654 WXXXXXXXXXXXXXXXXXXXXXXXPSAQARCCA 752
P+ QA+CCA
Sbjct: 181 --LQRSDEEGQALRGDAAVALNKGPARQAKCCA 211
>ref|NP_958842.1| ras-related protein Rab-5C isoform a [Homo sapiens].
Length = 216
Score = 141 bits (356), Expect = 7e-34
Identities = 80/218 (36%), Positives = 116/218 (53%), Gaps = 1/218 (0%)
Frame = +3
Query: 102 AERGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAF 278
A RG A P G ++ C F R+VK F T+G AF
Sbjct: 2 AGRGGAARPNGPAAG---NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAF 58
Query: 279 FTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKD 458
T+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T D+F +A+ W+K+
Sbjct: 59 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 118
Query: 459 LEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGA 638
L+ + ++V+ L GNK DL +R V F+E + +A+ LLFMETSAK V E F A
Sbjct: 119 LQRQ-ASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMA 177
Query: 639 IAQELWXXXXXXXXXXXXXXXXXXXXXXXPSAQARCCA 752
IA++L P+++++CC+
Sbjct: 178 IAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCS 215
>ref|NP_004574.2| ras-related protein Rab-5C isoform b [Homo sapiens].
Length = 216
Score = 141 bits (356), Expect = 7e-34
Identities = 80/218 (36%), Positives = 116/218 (53%), Gaps = 1/218 (0%)
Frame = +3
Query: 102 AERGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAF 278
A RG A P G ++ C F R+VK F T+G AF
Sbjct: 2 AGRGGAARPNGPAAG---NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAF 58
Query: 279 FTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKD 458
T+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T D+F +A+ W+K+
Sbjct: 59 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 118
Query: 459 LEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGA 638
L+ + ++V+ L GNK DL +R V F+E + +A+ LLFMETSAK V E F A
Sbjct: 119 LQRQ-ASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMA 177
Query: 639 IAQELWXXXXXXXXXXXXXXXXXXXXXXXPSAQARCCA 752
IA++L P+++++CC+
Sbjct: 178 IAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCS 215
>ref|NP_004153.2| ras-related protein Rab-5A [Homo sapiens].
Length = 215
Score = 140 bits (353), Expect = 2e-33
Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 1/185 (0%)
Frame = +3
Query: 102 AERGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAF 278
A RG + +G P T ++ C F R+VK F T+G AF
Sbjct: 2 ASRGATRPNG---PNTG-NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF 57
Query: 279 FTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKD 458
T+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T ++SF +A+ W+K+
Sbjct: 58 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 117
Query: 459 LEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGA 638
L+ + ++V+ L GNK DL +R V F+E + +A+ LLFMETSAK + V E F A
Sbjct: 118 LQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 176
Query: 639 IAQEL 653
IA++L
Sbjct: 177 IAKKL 181
>ref|NP_002859.1| ras-related protein Rab-5B [Homo sapiens].
Length = 215
Score = 135 bits (339), Expect = 7e-32
Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 1/183 (0%)
Frame = +3
Query: 108 RGMAQADGAPCPGTAPSQPCVFXXXXXXXXXXXXXXXAFRYVKNDFKSILP-TVGCAFFT 284
R A+ +G P S+ C F R+VK F T+G AF T
Sbjct: 4 RSTARPNGQP----QASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 59
Query: 285 KVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKAQQWLKDLE 464
+ V L ++K EIWDTAGQE+YHS+ +Y+RGA AA+VVYD+T +++F +A+ W+K+L+
Sbjct: 60 QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ 119
Query: 465 EEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQVTEAFGAIA 644
+ +V+ L GNK DL +R V +EE + +A+ LLFMETSAK V + F AIA
Sbjct: 120 RQ-ASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIA 178
Query: 645 QEL 653
++L
Sbjct: 179 KKL 181
>ref|NP_055168.2| ras-related protein Rab-26 [Homo sapiens].
Length = 256
Score = 125 bits (313), Expect = 7e-29
Identities = 66/135 (48%), Positives = 90/135 (66%)
Frame = +3
Query: 249 SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDS 428
+ + TVG F KV+D+ +KL++WDTAGQE++ SV H Y+R A+A L++YDVT K S
Sbjct: 92 TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS 151
Query: 429 FLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKL 608
F Q WL ++ E+ DV +ML+GNK+D ER V E+G++ A+ GL FMETSAK
Sbjct: 152 FDNIQAWLTEI-HEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKT 210
Query: 609 NHQVTEAFGAIAQEL 653
V AF AIA+EL
Sbjct: 211 GLNVDLAFTAIAKEL 225
>ref|NP_006859.2| ras-related protein Rab-31 [Homo sapiens].
Length = 195
Score = 124 bits (311), Expect = 1e-28
Identities = 62/144 (43%), Positives = 98/144 (68%), Gaps = 1/144 (0%)
Frame = +3
Query: 225 RYVKNDFK-SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALV 401
R+V++ F +I PT+G +F TK V G K IWDTAGQE++HS+ +Y+RG+ AA++
Sbjct: 25 RFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI 84
Query: 402 VYDVTRKDSFLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGL 581
VYD+T++DSF ++W+K+L+E ++V+ + GNK DL REV ++ KE+AES G
Sbjct: 85 VYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGA 143
Query: 582 LFMETSAKLNHQVTEAFGAIAQEL 653
+ +ETSAK + E F I++++
Sbjct: 144 IVVETSAKNAINIEELFQGISRQI 167
>ref|NP_002856.1| ras-related protein Rab-2A isoform a [Homo sapiens].
Length = 212
Score = 124 bits (311), Expect = 1e-28
Identities = 61/132 (46%), Positives = 86/132 (65%)
Frame = +3
Query: 261 TVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDSFLKA 440
T+G F +++ + +KL+IWDTAGQE + S+ Y+RGA AL+VYD+TR+D+F
Sbjct: 38 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHL 97
Query: 441 QQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKLNHQV 620
WL+D + ++V+ML+GNK DL REV EEG+ FA GL+FMETSAK V
Sbjct: 98 TTWLEDARQHSN-SNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNV 156
Query: 621 TEAFGAIAQELW 656
EAF A+E++
Sbjct: 157 EEAFINTAKEIY 168
>ref|NP_783865.1| ras-related protein Rab-37 isoform 3 [Homo sapiens].
Length = 216
Score = 123 bits (308), Expect = 3e-28
Identities = 64/135 (47%), Positives = 86/135 (63%)
Frame = +3
Query: 249 SILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALVVYDVTRKDS 428
S TVG F KVV + +KL+IWDTAGQE++ SV H Y+R A A L++YD+T K S
Sbjct: 51 SFSATVGIGFTNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSS 110
Query: 429 FLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGLLFMETSAKL 608
F + WL ++ E+ DVV+ML+GNK D+ ER + E+G+ A G+ F+ETSAK
Sbjct: 111 FDNIRAWLTEI-HEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKT 169
Query: 609 NHQVTEAFGAIAQEL 653
V AF AIA+EL
Sbjct: 170 GMNVELAFLAIAKEL 184
>ref|NP_001229573.1| ras-related protein Rab-2A isoform b [Homo sapiens].
Length = 188
Score = 122 bits (307), Expect = 3e-28
Identities = 63/145 (43%), Positives = 90/145 (62%)
Frame = +3
Query: 222 FRYVKNDFKSILPTVGCAFFTKVVDLGAASLKLEIWDTAGQEKYHSVCHLYFRGANAALV 401
F+Y+ I+ G F +++ + +KL+IWDTAGQE + S+ Y+RGA AL+
Sbjct: 7 FKYI------IIGDTGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 60
Query: 402 VYDVTRKDSFLKAQQWLKDLEEEFRLGDVVVMLVGNKLDLGKEREVAFEEGKEFAESKGL 581
VYD+TR+D+F WL+D + ++V+ML+GNK DL REV EEG+ FA GL
Sbjct: 61 VYDITRRDTFNHLTTWLEDARQHSN-SNMVIMLIGNKSDLESRREVKKEEGEAFAREHGL 119
Query: 582 LFMETSAKLNHQVTEAFGAIAQELW 656
+FMETSAK V EAF A+E++
Sbjct: 120 IFMETSAKTASNVEEAFINTAKEIY 144
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,575,880
Number of extensions: 1038375
Number of successful extensions: 7115
Number of sequences better than 1.0e-05: 163
Number of HSP's gapped: 6793
Number of HSP's successfully gapped: 163
Length of query: 303
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,934,836
Effective search space: 3001902036
Effective search space used: 3001902036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013408
(909 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118527.1| Sus scrofa unplaced genomic scaffold ChrUScaf853 432 e-118
Sscrofa_Chr15 321 4e-85
>gb|JH118527.1| Sus scrofa unplaced genomic scaffold ChrUScaf853
Length = 116143
Score = 432 bits (218), Expect = e-118
Identities = 258/269 (95%), Gaps = 2/269 (0%)
Strand = Plus / Minus
Query: 642 gcccaggagctttggcgcagagaagagaggaaggaggaccagcagcagcagcagagagac 701
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 gcccaggagctttggtgcagagaagagaggaaggaggaccagcagcagcagcagagagac 929
Query: 702 gcacagctggatctgaaccagaggccctcggcgcaggccagatgctgcgcccgctagaag 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gcacagctggatctgaaccagaggccctcggcgcaggccagatgctgcgcccgctagaag 869
Query: 762 cagcctctccaggaggggccgtggggagggaggccccaagcccgggccctgcccgct-cg 820
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||
Sbjct: 868 cagcctctccaggaggggccgtgggga-ggaggcccccagcccgggccctgcccgctccg 810
Query: 821 tgttgaccagatacttatcccgattccccgtcgatgctggcctgtttctgantcccggtg 880
|||||||||||||||||||||||||| |||||||||||||| |||| |||| ||||||||
Sbjct: 809 tgttgaccagatacttatcccgattcgccgtcgatgctggcttgttcctgagtcccggtg 750
Query: 881 gctcttggagcttgcatccccctgaatta 909
||||| | |||| ||||||||||||||||
Sbjct: 749 gctctggaagctggcatccccctgaatta 721
Score = 303 bits (153), Expect = 9e-80
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 271 gtgccttcttcaccaaggtggtggatttgggggctgcgtctctgaagctggagatctggg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4798 gtgccttcttcaccaaggtggtggatttgggggctgcgtctctgaagctggagatctggg 4739
Query: 331 acacggccggccaggagaagtaccacagcgtctgccacctctacttcaggggcgccaatg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4738 acacggccggccaggagaagtaccacagcgtctgccacctctacttcaggggcgccaatg 4679
Query: 391 ctgcgcttgtggtgtatgacgtcaccaggaagg 423
|||||||||||||||||||||||||||||||||
Sbjct: 4678 ctgcgcttgtggtgtatgacgtcaccaggaagg 4646
Score = 228 bits (115), Expect = 4e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 421 aggattccttcctcaaggcgcagcagtggctcaaggacctggaagaggagttccgcctgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4190 aggattccttcctcaaggcgcagcagtggctcaaggacctggaagaggagttccgcctgg 4131
Query: 481 gtgacgtggtggtgatgctggttggcaacaagctggaccttggcaaggagcggga 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4130 gtgacgtggtggtgatgctggttggcaacaagctggaccttggcaaggagcggga 4076
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1 cctttcctctggtcagaagtggggagaaaggggacacaggcaggggcccggcaggacccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13763 cctttcctctggtcagaagtggggagaaaggggacacaggcaggggcccggcaggacccg 13704
Query: 61 gtgatgacaggctgtcaggctcgctgcaagtgaccaggcccgcggaacgag 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13703 gtgatgacaggctgtcaggctcgctgcaagtgaccaggcccgcggaacgag 13653
Score = 190 bits (96), Expect = 9e-46
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 547 aggaggggaaggagtttgccgagagcaaggggctgctattcatggaaacctcggccaagc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 aggaggggaaggagtttgccgagagcaaggggctgctattcatggaaacctcggccaagc 1297
Query: 607 tgaaccaccaggtgactgaggccttcggcgccattg 642
||||||||||||||||||||||||||||||||||||
Sbjct: 1296 tgaaccaccaggtgactgaggccttcggcgccattg 1261
Score = 186 bits (94), Expect = 1e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 111 ggcatggcgcaggcagatggggccccctgccccggcaccgccccgagccagccctgcgtc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7121 ggcatggcgcaggcagatggggccccctgccccggcaccgccccgagccagccctgcgtc 7062
Query: 171 ttcaagctggttctcctgggcagtggctctgtgg 204
||||||||||||||||||||||||||||||||||
Sbjct: 7061 ttcaagctggttctcctgggcagtggctctgtgg 7028
>Sscrofa_Chr15
|| Length = 157681621
Score = 321 bits (162), Expect = 4e-85
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 111 ggcatggcgcaggcagatggggccccctgccccggcaccgccccgagccagccctgcgtc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151660608 ggcatggcgcaggcagatggggccccctgccccggcaccgccccgagccagccctgcgtc 151660549
Query: 171 ttcaagctggttctcctgggcagtggctctgtgggcaagtccagcttggctttccggtat 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151660548 ttcaagctggttctcctgggcagtggctctgtgggcaagtccagcttggctttccggtat 151660489
Query: 231 gtgaagaatgacttcaagagcatcctgccgacggtgggatgt 272
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151660488 gtgaagaatgacttcaagagcatcctgccgacggtgggatgt 151660447
Score = 303 bits (153), Expect = 9e-80
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 271 gtgccttcttcaccaaggtggtggatttgggggctgcgtctctgaagctggagatctggg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151631277 gtgccttcttcaccaaggtggtggatttgggggctgcgtctctgaagctggagatctggg 151631336
Query: 331 acacggccggccaggagaagtaccacagcgtctgccacctctacttcaggggcgccaatg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151631337 acacggccggccaggagaagtaccacagcgtctgccacctctacttcaggggcgccaatg 151631396
Query: 391 ctgcgcttgtggtgtatgacgtcaccaggaagg 423
|||||||||||||||||||||||||||||||||
Sbjct: 151631397 ctgcgcttgtggtgtatgacgtcaccaggaagg 151631429
Score = 299 bits (151), Expect = 1e-78
Identities = 174/179 (97%), Gaps = 2/179 (1%)
Strand = Plus / Plus
Query: 642 gcccaggagctttggcgcagagaagagaggaaggaggaccagcagcagcagcagagagac 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151635432 gcccaggagctttggcgcagagaagagaggaaggaggaccagcagcagcagcagagagac 151635491
Query: 702 gcacagctggatctgaaccagaggccctcggcgcaggccagatgctgcgcccgctagaag 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151635492 gcacagctggatctgaaccagaggccctcggcgcaggccagatgctgcgcccgctagaag 151635551
Query: 762 cagcctctccaggaggggccgtggggagggaggcc-ccaagcccgggccctgcccgctc 819
||||||||||||||||||||||||||| |||| || | ||||||||||||||||||||
Sbjct: 151635552 cagcctctccaggaggggccgtgggga-ggagcccaacgagcccgggccctgcccgctc 151635609
Score = 242 bits (122), Expect = 3e-61
Identities = 129/130 (99%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 421 aggattccttcctcaaggcgcagcagtggctcaaggacctggaagaggagttccgcctgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151631843 aggattccttcctcaaggcgcagcagtggctcaaggacctggaagaggagttccgcctgg 151631902
Query: 481 gtgacgtggtggtgatgctggttggcaa-caagctggaccttggcaaggagcgggaggtg 539
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 151631903 gtgacgtggtggtgatgctggttggcaaccaagctggaccttggcaaggagcgggaggtg 151631962
Query: 540 gcctttgagg 549
||||||||||
Sbjct: 151631963 gcctttgagg 151631972
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1 cctttcctctggtcagaagtggggagaaaggggacacaggcaggggcccggcaggacccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151666576 cctttcctctggtcagaagtggggagaaaggggacacaggcaggggcccggcaggacccg 151666517
Query: 61 gtgatgacaggctgtcaggctcgctgcaagtgaccaggcccgcggaacgag 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151666516 gtgatgacaggctgtcaggctcgctgcaagtgaccaggcccgcggaacgag 151666466
Score = 190 bits (96), Expect = 9e-46
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 547 aggaggggaaggagtttgccgagagcaaggggctgctattcatggaaacctcggccaagc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151635110 aggaggggaaggagtttgccgagagcaaggggctgctattcatggaaacctcggccaagc 151635169
Query: 607 tgaaccaccaggtgactgaggccttcggcgccattg 642
||||||||||||||||||||||||||||||||||||
Sbjct: 151635170 tgaaccaccaggtgactgaggccttcggcgccattg 151635205
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,511,063
Number of extensions: 402
Number of successful extensions: 402
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 12
Length of query: 909
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 888
Effective length of database: 2,808,413,156
Effective search space: 2493870882528
Effective search space used: 2493870882528
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)