Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013413
(910 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076840.1| hypothetical protein LOC504587 [Bos taurus]. 220 1e-57
>ref|NP_001076840.1| hypothetical protein LOC504587 [Bos taurus].
Length = 180
Score = 220 bits (561), Expect = 1e-57
Identities = 121/180 (67%), Positives = 122/180 (67%), Gaps = 2/180 (1%)
Frame = +1
Query: 31 MAARGRRAEPXXXXXXXXXXXXXXX--SRWAESGPGTSPESGDDEVSGASSSPVTGGVNL 204
MAARGRRAEP SRWAESGPGTSPESGDDEVSGA SSPV+GGVNL
Sbjct: 1 MAARGRRAEPPGREAPGPAGGGGGGGGSRWAESGPGTSPESGDDEVSGAGSSPVSGGVNL 60
Query: 205 FANDGSFLELFKRKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLSFV 384
FANDGSFLELFKRKM TLSFV
Sbjct: 61 FANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQPATAAAAGPGDPERKGGPGPTLSFV 120
Query: 385 GKRRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 564
GKRRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK
Sbjct: 121 GKRRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 180
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,345,239
Number of extensions: 744745
Number of successful extensions: 2213
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2203
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,306,398
Effective search space: 2875585998
Effective search space used: 2875585998
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013413
(910 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533905.1| PREDICTED: similar to RIKEN cDNA 2310036O22 [Ca... 218 8e-57
>ref|XP_533905.1| PREDICTED: similar to RIKEN cDNA 2310036O22 [Canis familiaris].
Length = 179
Score = 218 bits (554), Expect = 8e-57
Identities = 119/179 (66%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Frame = +1
Query: 31 MAARGRRAEPXXXXXXXXXXXXXXXSRWAESGPGTSPESGDDEVSGASSSPVTGGVNLFA 210
MAARGRRAEP SRWAESGPGTSPESGD+E SGA SSPV+GGVNLFA
Sbjct: 1 MAARGRRAEPPGREAPGPAGGGGVGSRWAESGPGTSPESGDEEASGAGSSPVSGGVNLFA 60
Query: 211 NDGSFLELFKRKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TLSFVG 387
NDGSFLELFKRKM TLSFVG
Sbjct: 61 NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQPAAAAAAAGPGDLKRKGGPGPTLSFVG 120
Query: 388 KRRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 564
KRRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK
Sbjct: 121 KRRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 179
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,876,164
Number of extensions: 653066
Number of successful extensions: 2192
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2181
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 201
Effective length of database: 15,474,232
Effective search space: 3110320632
Effective search space used: 3110320632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013413
(910 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123371.1| PREDICTED: uncharacterized protein C19orf43-... 228 3e-60
>ref|XP_003123371.1| PREDICTED: uncharacterized protein C19orf43-like [Sus scrofa].
Length = 178
Score = 228 bits (582), Expect = 3e-60
Identities = 123/178 (69%), Positives = 123/178 (69%)
Frame = +1
Query: 31 MAARGRRAEPXXXXXXXXXXXXXXXSRWAESGPGTSPESGDDEVSGASSSPVTGGVNLFA 210
MAARGRRAEP SRWAESGPGTSPESGDDEVSGASSSPVTGGVNLFA
Sbjct: 1 MAARGRRAEPPGREAPGPAGGGGGGSRWAESGPGTSPESGDDEVSGASSSPVTGGVNLFA 60
Query: 211 NDGSFLELFKRKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLSFVGK 390
NDGSFLELFKRKM TLSFVGK
Sbjct: 61 NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQPATAAAAGPGDPKRKGGPGPTLSFVGK 120
Query: 391 RRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 564
RRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK
Sbjct: 121 RRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 178
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,006,007
Number of extensions: 636199
Number of successful extensions: 1406
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1405
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,904,026
Effective search space: 1825325330
Effective search space used: 1825325330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013413
(910 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081036.2| hypothetical protein LOC68544 [Mus musculus]. 208 5e-54
>ref|NP_081036.2| hypothetical protein LOC68544 [Mus musculus].
Length = 173
Score = 208 bits (529), Expect = 5e-54
Identities = 119/178 (66%), Positives = 120/178 (67%)
Frame = +1
Query: 31 MAARGRRAEPXXXXXXXXXXXXXXXSRWAESGPGTSPESGDDEVSGASSSPVTGGVNLFA 210
MAARGRRAEP SRWAESGPGTSPESGDDEVSG SSPV+ GVNLFA
Sbjct: 1 MAARGRRAEPPGREAPGPAGSGR--SRWAESGPGTSPESGDDEVSG--SSPVSSGVNLFA 56
Query: 211 NDGSFLELFKRKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLSFVGK 390
NDGSFLELFKRKM TLSFVGK
Sbjct: 57 NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDPPASAAAGPGNPKRKGGPGP-TLSFVGK 115
Query: 391 RRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 564
RRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK
Sbjct: 116 RRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 173
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,116,095
Number of extensions: 526819
Number of successful extensions: 1705
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1700
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 202
Effective length of database: 12,583,923
Effective search space: 2541952446
Effective search space used: 2541952446
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013413
(910 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076943.1| hypothetical protein LOC79002 [Homo sapiens]. 216 2e-56
>ref|NP_076943.1| hypothetical protein LOC79002 [Homo sapiens].
Length = 176
Score = 216 bits (551), Expect = 2e-56
Identities = 119/178 (66%), Positives = 121/178 (67%)
Frame = +1
Query: 31 MAARGRRAEPXXXXXXXXXXXXXXXSRWAESGPGTSPESGDDEVSGASSSPVTGGVNLFA 210
MAARGRRAEP SRWAESG GTSPESGD+EVSGA SSPV+GGVNLFA
Sbjct: 1 MAARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFA 60
Query: 211 NDGSFLELFKRKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLSFVGK 390
NDGSFLELFKRKM TLSFVGK
Sbjct: 61 NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGS--TLSFVGK 118
Query: 391 RRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 564
RRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK
Sbjct: 119 RRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 176
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,187,124
Number of extensions: 631188
Number of successful extensions: 2079
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2074
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,934,836
Effective search space: 3001902036
Effective search space used: 3001902036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013413
(910 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 513 e-143
>Sscrofa_Chr02
|| Length = 162569375
Score = 513 bits (259), Expect = e-143
Identities = 297/316 (93%)
Strand = Plus / Plus
Query: 458 aggtattaacaagtaaaggtgatgcatgggccaagtacatggcagaggtgaaaaagtaca 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66645593 aggtattaacaagtaaaggtgatgcatgggccaagtacatggcagaggtgaaaaagtaca 66645652
Query: 518 aagcccaccagtgcggcgatgatgataaaactcggcccctggtgaaatgannnnnnnnnn 577
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66645653 aagcccaccagtgcggcgatgatgataaaactcggcccctggtgaaatgacccccctccc 66645712
Query: 578 nngcctgcccacagcctgggactctctgcgatgtacataactatttaatgcagcggcagc 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66645713 ccgcctgcccacagcctgggactctctgcgatgtacataactatttaatgcagcggcagc 66645772
Query: 638 gaggcagcctttttcccccaaggacttatacacagaaggaaaccgagatgcttcccgcag 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66645773 gaggcagcctttttcccccaaggacttatacacagaaggaaaccgagatgcttcccgcag 66645832
Query: 698 ctgcggacgattctccaggactcnnnnnnnaccttgagcacttgcctcctgagacttaat 757
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 66645833 ctgcggacgattctccaggactctttttttaccttgagcacttgcctcctgagacttaat 66645892
Query: 758 agaacagtggtttact 773
||||||||||||||||
Sbjct: 66645893 agaacagtggtttact 66645908
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 106 agccgatgggctgagtcggggcccgggacgtcgcccgagagcggggatgatgaagtgtcg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66643128 agccgatgggctgagtcggggcccgggacgtcgcccgagagcggggatgatgaagtgtcg 66643187
Query: 166 ggcgctagttcgagccctgtgacgggcggcgtgaacttgttcgccaacgacggcagcttc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66643188 ggcgctagttcgagccctgtgacgggcggcgtgaacttgttcgccaacgacggcagcttc 66643247
Query: 226 ctggagctgttcaagcggaagatggaggaggagcagcggcagcggcaggagga 278
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66643248 ctggagctgttcaagcggaagatggaggaggagcagcggcagcggcaggagga 66643300
Score = 159 bits (80), Expect = 3e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 382 gtgggcaagcgcagaggcgggaacaaactagccctcaagacgggaatagtagccaagaag 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66645212 gtgggcaagcgcagaggcgggaacaaactagccctcaagacgggaatagtagccaagaag 66645271
Query: 442 cagaagacggaggatgaggt 461
||||||||||||||||||||
Sbjct: 66645272 cagaagacggaggatgaggt 66645291
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 ggagtcctttgcgcggcacctggcgacaaaatggctgcccgagggagacgggcggagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66643023 ggagtcctttgcgcggcacctggcgacaaaatggctgcccgagggagacgggcggagcct 66643082
Score = 85.7 bits (43), Expect = 4e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 341 atccgaagaggaagggcggcccgggccccacgctcagcttcgt 383
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66643363 atccgaagaggaagggcggcccgggccccacgctcagcttcgt 66643405
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 850 agccgtcacttctgggaagtaaagaacttgatttagtgctgg 891
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66645985 agccgtcacttctgggaagtaaagaacttgatttagtgctgg 66646026
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,430,826
Number of extensions: 103
Number of successful extensions: 103
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 7
Length of query: 910
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 889
Effective length of database: 2,808,413,156
Effective search space: 2496679295684
Effective search space used: 2496679295684
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)