Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013421
(1253 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002693111.1| PREDICTED: eukaryotic translation initiation... 520 e-148
Alignment gi|XP_591540.2| PREDICTED: eukaryotic translation initiation fa... 520 e-148
Alignment gi|XP_002693112.1| PREDICTED: eukaryotic translation initiation... 402 e-112
Alignment gi|XP_002705843.1| PREDICTED: eukaryotic translation initiation... 402 e-112
Alignment gi|NP_001029595.1| 26S proteasome non-ATPase regulatory subunit... 121 1e-27
Alignment gi|NP_001095433.1| COP9 signalosome complex subunit 6 [Bos taur... 91 2e-18
Alignment gi|NP_001020493.1| eukaryotic translation initiation factor 3 s... 54 4e-07
>ref|XP_002693111.1| PREDICTED: eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa-like isoform 1 [Bos taurus].
Length = 390
Score = 520 bits (1340), Expect = e-148
Identities = 263/266 (98%), Positives = 265/266 (99%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME
Sbjct: 125 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 184
Query: 507 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQSGRM 686
FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQ+GRM
Sbjct: 185 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 244
Query: 687 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 866
SIKAYVSTLMGVPGRTMGVMFTPLTVKY YYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ
Sbjct: 245 SIKAYVSTLMGVPGRTMGVMFTPLTVKYTYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 304
Query: 867 VGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI 1046
VGGASARIQDALSTVLQYAEDVLSGKV+ADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI
Sbjct: 305 VGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI 364
Query: 1047 NDLLMVTYLANLTQSQIALNEKLVNL 1124
NDLLMVTYLANLTQSQIALNEKLVNL
Sbjct: 365 NDLLMVTYLANLTQSQIALNEKLVNL 390
>ref|XP_591540.2| PREDICTED: eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa isoform 1 [Bos taurus].
Length = 390
Score = 520 bits (1340), Expect = e-148
Identities = 263/266 (98%), Positives = 265/266 (99%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME
Sbjct: 125 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 184
Query: 507 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQSGRM 686
FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQ+GRM
Sbjct: 185 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 244
Query: 687 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 866
SIKAYVSTLMGVPGRTMGVMFTPLTVKY YYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ
Sbjct: 245 SIKAYVSTLMGVPGRTMGVMFTPLTVKYTYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 304
Query: 867 VGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI 1046
VGGASARIQDALSTVLQYAEDVLSGKV+ADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI
Sbjct: 305 VGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI 364
Query: 1047 NDLLMVTYLANLTQSQIALNEKLVNL 1124
NDLLMVTYLANLTQSQIALNEKLVNL
Sbjct: 365 NDLLMVTYLANLTQSQIALNEKLVNL 390
>ref|XP_002693112.1| PREDICTED: eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa-like isoform 2 [Bos taurus].
Length = 344
Score = 402 bits (1034), Expect = e-112
Identities = 217/266 (81%), Positives = 218/266 (81%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME
Sbjct: 125 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 184
Query: 507 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQSGRM 686
FAKNMYELHKKVSPNELILG
Sbjct: 185 FAKNMYELHKKVSPNELILG---------------------------------------- 204
Query: 687 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 866
TLMGVPGRTMGVMFTPLTVKY YYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ
Sbjct: 205 ------CTLMGVPGRTMGVMFTPLTVKYTYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 258
Query: 867 VGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI 1046
VGGASARIQDALSTVLQYAEDVLSGKV+ADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI
Sbjct: 259 VGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI 318
Query: 1047 NDLLMVTYLANLTQSQIALNEKLVNL 1124
NDLLMVTYLANLTQSQIALNEKLVNL
Sbjct: 319 NDLLMVTYLANLTQSQIALNEKLVNL 344
>ref|XP_002705843.1| PREDICTED: eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Bos taurus].
Length = 344
Score = 402 bits (1034), Expect = e-112
Identities = 217/266 (81%), Positives = 218/266 (81%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME
Sbjct: 125 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 184
Query: 507 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQSGRM 686
FAKNMYELHKKVSPNELILG
Sbjct: 185 FAKNMYELHKKVSPNELILG---------------------------------------- 204
Query: 687 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 866
TLMGVPGRTMGVMFTPLTVKY YYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ
Sbjct: 205 ------CTLMGVPGRTMGVMFTPLTVKYTYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 258
Query: 867 VGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI 1046
VGGASARIQDALSTVLQYAEDVLSGKV+ADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI
Sbjct: 259 VGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI 318
Query: 1047 NDLLMVTYLANLTQSQIALNEKLVNL 1124
NDLLMVTYLANLTQSQIALNEKLVNL
Sbjct: 319 NDLLMVTYLANLTQSQIALNEKLVNL 344
>ref|NP_001029595.1| 26S proteasome non-ATPase regulatory subunit 7 [Bos taurus].
Length = 322
Score = 121 bits (304), Expect = 1e-27
Identities = 81/286 (28%), Positives = 147/286 (51%), Gaps = 8/286 (2%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNE--GAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV- 497
V +HP++L S+VD + R + RV+G LLG+ K ++V+N F+VP +E + + +V
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 498 --DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSL 671
D ++ +NMY + KKV+ E I+GWY TG + ++ + I+E R PN + + +D
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKP 128
Query: 672 QSGRMSIKAYVST-LMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGL 848
+ + +AY+S + G F +T + + E +GV+ +++ + +G
Sbjct: 129 KDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDI--KDTTVGT 186
Query: 849 SSD--LQQVGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDF 1022
S QV G + L + Y E V +GK+ ++ + L + N +P + ++F
Sbjct: 187 LSQRITNQVHGLKG-LNSKLLDIRGYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEF 245
Query: 1023 ETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL*RPRDSEWSRGE 1160
ND ++V YLA+L +S +AL+ + N RD+E G+
Sbjct: 246 VKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKEGQ 291
>ref|NP_001095433.1| COP9 signalosome complex subunit 6 [Bos taurus].
Length = 324
Score = 90.9 bits (224), Expect = 2e-18
Identities = 62/265 (23%), Positives = 123/265 (46%), Gaps = 4/265 (1%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAAR---VIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV 497
V LHP+++ +I D + R R VIG L+G + ++EV N F + + E+++ +
Sbjct: 38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIII 97
Query: 498 DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQS 677
D E+ E K+V LGWY TG + +H+ +P+ L ++ +
Sbjct: 98 DKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKH 157
Query: 678 GRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK-TCFSPNRVIGLSS 854
+ + + S + + G ++F LT A + ERIGVD + + T ++
Sbjct: 158 TDLPVSVFESVIDIINGEAT-MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAE 216
Query: 855 DLQQVGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDFETML 1034
L A + + +L+Y + +G+V ++ + R +L + +P + + F+T
Sbjct: 217 HLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDF 276
Query: 1035 NSNINDLLMVTYLANLTQSQIALNE 1109
ND+ ++ YL +T++ +N+
Sbjct: 277 YDQCNDVGLMAYLGTITKTCNTMNQ 301
>ref|NP_001020493.1| eukaryotic translation initiation factor 3 subunit H [Bos taurus].
Length = 352
Score = 53.5 bits (127), Expect = 4e-07
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
V++ +++ I+ Y+ +G V G LLG V + +E+TNCF P + +D +++
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 507 FAKNMYELHKKVSPNELILGWYAT---GHDITEHSVLIHEYYSREAPNPIHLTVD-TSLQ 674
+ M + V+ + L +GWY + G +T + Y + L D
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTA 158
Query: 675 SGRMSIKAY 701
G +S+KAY
Sbjct: 159 QGSLSLKAY 167
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,812,614
Number of extensions: 927938
Number of successful extensions: 4245
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4215
Number of HSP's successfully gapped: 9
Length of query: 417
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 312
Effective length of database: 14,207,134
Effective search space: 4432625808
Effective search space used: 4432625808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013421
(1253 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534044.2| PREDICTED: similar to eukaryotic translation in... 465 e-131
Alignment gi|XP_536802.1| PREDICTED: similar to 26S proteasome non-ATPase... 122 7e-28
Alignment gi|XP_536866.2| PREDICTED: similar to COP9 signalosome subunit ... 91 2e-18
Alignment gi|XP_860298.1| PREDICTED: similar to COP9 signalosome subunit ... 88 2e-17
Alignment gi|XP_860259.1| PREDICTED: similar to COP9 signalosome subunit ... 81 2e-15
Alignment gi|XP_863153.1| PREDICTED: similar to 26S proteasome non-ATPase... 55 1e-07
Alignment gi|XP_860962.1| PREDICTED: similar to eukaryotic translation in... 54 4e-07
Alignment gi|XP_532315.1| PREDICTED: similar to eukaryotic translation in... 54 4e-07
>ref|XP_534044.2| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 5 epsilon, 47kDa [Canis familiaris].
Length = 265
Score = 465 bits (1196), Expect = e-131
Identities = 233/239 (97%), Positives = 238/239 (99%)
Frame = +3
Query: 408 TLLGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHD 587
+L GTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHD
Sbjct: 27 SLTGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHD 86
Query: 588 ITEHSVLIHEYYSREAPNPIHLTVDTSLQSGRMSIKAYVSTLMGVPGRTMGVMFTPLTVK 767
ITEHSVLIHEYYSR+APNPIHLTVDTSLQ+GRMSIKAYVSTLMGVPGRTMGVMFTPLTVK
Sbjct: 87 ITEHSVLIHEYYSRKAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVK 146
Query: 768 YAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKV 947
YAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKV
Sbjct: 147 YAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKV 206
Query: 948 AADNTVGRFLMSLVNQVPKIVPEDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL 1124
+ADNTVGRFLMSLVNQVPKIVP+DFETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL
Sbjct: 207 SADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL 265
>ref|XP_536802.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 7
(26S proteasome regulatory subunit rpn8) (26S proteasome
regulatory subunit S12) (Proteasome subunit p40) (Mov34
protein homolog) isoform 1 [Canis familiaris].
Length = 324
Score = 122 bits (306), Expect = 7e-28
Identities = 81/286 (28%), Positives = 147/286 (51%), Gaps = 8/286 (2%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNE--GAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV- 497
V +HP++L S+VD + R + RV+G LLG+ K ++V+N F+VP +E + + +V
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 498 --DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSL 671
D ++ +NMY + KKV+ E I+GWY TG + ++ + I+E R PN + + +D
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKP 128
Query: 672 QSGRMSIKAYVST-LMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGL 848
+ + +AY+S + G F +T + + E +GV+ +++ + +G
Sbjct: 129 KDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDI--KDTTVGT 186
Query: 849 SSD--LQQVGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDF 1022
S QV G + L + Y E V +GK+ ++ + L + N +P + ++F
Sbjct: 187 LSQRITNQVHGLKG-LNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEF 245
Query: 1023 ETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL*RPRDSEWSRGE 1160
ND ++V YLA+L +S +AL+ + N RD+E G+
Sbjct: 246 VKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKEGQ 291
>ref|XP_536866.2| PREDICTED: similar to COP9 signalosome subunit 6 isoform 1 [Canis
familiaris].
Length = 321
Score = 91.3 bits (225), Expect = 2e-18
Identities = 62/265 (23%), Positives = 123/265 (46%), Gaps = 4/265 (1%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAAR---VIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV 497
V LHP+++ +I D + R R VIG L+G + ++EV N F + + E+++ +
Sbjct: 35 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIII 94
Query: 498 DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQS 677
D E+ E K+V LGWY TG + +H+ +P+ L ++ +
Sbjct: 95 DKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKH 154
Query: 678 GRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK-TCFSPNRVIGLSS 854
+ + + S + + G ++F LT A + ERIGVD + + T ++
Sbjct: 155 TDLPVSVFESVIDIINGEAT-MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAE 213
Query: 855 DLQQVGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDFETML 1034
L A + + +L+Y + +G+V ++ + R +L + +P + + F+T
Sbjct: 214 HLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDF 273
Query: 1035 NSNINDLLMVTYLANLTQSQIALNE 1109
ND+ ++ YL +T++ +N+
Sbjct: 274 YDQCNDVGLMAYLGTITKTCNTMNQ 298
>ref|XP_860298.1| PREDICTED: similar to COP9 signalosome subunit 6 isoform 3 [Canis
familiaris].
Length = 315
Score = 88.2 bits (217), Expect = 2e-17
Identities = 66/272 (24%), Positives = 126/272 (46%), Gaps = 11/272 (4%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAAR---VIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV 497
V LHP+++ +I D + R R VIG L+G + ++EV N F + + E+++ +
Sbjct: 22 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIII 81
Query: 498 DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSR--EAP-----NPIHLT 656
D E+ E K+V LGWY TG + +H+ E+P NP+
Sbjct: 82 DKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKH 141
Query: 657 VDTSLQSGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK-TCFSPN 833
D S + ++ + + S + + G ++F LT A + ERIGVD + + T
Sbjct: 142 TDLSPVALQLPVSVFESVIDIINGEAT-MLFAELTYTLATEEAERIGVDHVARMTATGSG 200
Query: 834 RVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVP 1013
++ L A + + +L+Y + +G+V ++ + R +L + +P +
Sbjct: 201 ENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLST 260
Query: 1014 EDFETMLNSNINDLLMVTYLANLTQSQIALNE 1109
+ F+T ND+ ++ YL +T++ +N+
Sbjct: 261 DKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQ 292
>ref|XP_860259.1| PREDICTED: similar to COP9 signalosome subunit 6 isoform 2 [Canis
familiaris].
Length = 292
Score = 81.3 bits (199), Expect = 2e-15
Identities = 60/265 (22%), Positives = 117/265 (44%), Gaps = 4/265 (1%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAAR---VIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV 497
V LHP+++ +I D + R R VIG L+G + ++EV N F + + E+++ +
Sbjct: 22 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIII 81
Query: 498 DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQS 677
D E+ E K+V LGWY TG + +H+ +P+ L ++ +
Sbjct: 82 DKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKH 141
Query: 678 GRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK-TCFSPNRVIGLSS 854
+ ++F LT A + ERIGVD + + T ++
Sbjct: 142 TDAT-----------------MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAE 184
Query: 855 DLQQVGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDFETML 1034
L A + + +L+Y + +G+V ++ + R +L + +P + + F+T
Sbjct: 185 HLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDF 244
Query: 1035 NSNINDLLMVTYLANLTQSQIALNE 1109
ND+ ++ YL +T++ +N+
Sbjct: 245 YDQCNDVGLMAYLGTITKTCNTMNQ 269
>ref|XP_863153.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
7 (26S proteasome regulatory subunit rpn8) (26S
proteasome regulatory subunit S12) (Proteasome subunit
p40) (Mov34 protein) isoform 2 [Canis familiaris].
Length = 89
Score = 55.1 bits (131), Expect = 1e-07
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNE--GAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV- 497
V +HP++L S+VD + R + RV+G LLG+ K ++V+N F+VP +E + + +V
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 498 --DMEFAKNMYELHKKVS 545
D ++ +NMY + KKV+
Sbjct: 69 FLDHDYLENMYGMFKKVN 86
>ref|XP_860962.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa isoform 7 [Canis familiaris].
Length = 303
Score = 53.5 bits (127), Expect = 4e-07
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
V++ +++ I+ Y+ +G V G LLG V + +E+TNCF P + +D +++
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 507 FAKNMYELHKKVSPNELILGWYAT---GHDITEHSVLIHEYYSREAPNPIHLTVD-TSLQ 674
+ M + V+ + L +GWY + G +T + Y + L D
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTA 158
Query: 675 SGRMSIKAY 701
G +S+KAY
Sbjct: 159 QGSLSLKAY 167
>ref|XP_532315.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa isoform 1 [Canis familiaris].
Length = 352
Score = 53.5 bits (127), Expect = 4e-07
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
V++ +++ I+ Y+ +G V G LLG V + +E+TNCF P + +D +++
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 507 FAKNMYELHKKVSPNELILGWYAT---GHDITEHSVLIHEYYSREAPNPIHLTVD-TSLQ 674
+ M + V+ + L +GWY + G +T + Y + L D
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTA 158
Query: 675 SGRMSIKAY 701
G +S+KAY
Sbjct: 159 QGSLSLKAY 167
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,732,063
Number of extensions: 842174
Number of successful extensions: 4135
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4084
Number of HSP's successfully gapped: 8
Length of query: 417
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 312
Effective length of database: 15,374,224
Effective search space: 4796757888
Effective search space used: 4796757888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013421
(1253 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360813.1| PREDICTED: 26S proteasome non-ATPase regulat... 124 1e-28
Alignment gi|NP_001098769.1| COP9 signalosome complex subunit 6 [Sus scro... 91 1e-18
Alignment gi|XP_003355036.1| PREDICTED: eukaryotic translation initiation... 54 2e-07
Alignment gi|XP_003125563.2| PREDICTED: eukaryotic translation initiation... 54 2e-07
>ref|XP_003360813.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 [Sus
scrofa].
Length = 324
Score = 124 bits (311), Expect = 1e-28
Identities = 81/286 (28%), Positives = 148/286 (51%), Gaps = 8/286 (2%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNE--GAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV- 497
V +HP++L S+VD + R + RV+G LLG+ K ++V+N F+VP +E + + +V
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 498 --DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSL 671
D ++ +NMY + KKV+ E I+GWY TG + ++ + I+E R PN + + +D
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKP 128
Query: 672 QSGRMSIKAYVST-LMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGL 848
+ + +AY+S + G F +T + + E +GV+++++ + +G
Sbjct: 129 KDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEILLRDI--KDTTVGT 186
Query: 849 SSD--LQQVGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDF 1022
S QV G + L + Y E V +GK+ ++ + L + N +P + ++F
Sbjct: 187 LSQRITNQVHGLKG-LNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEF 245
Query: 1023 ETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL*RPRDSEWSRGE 1160
ND ++V YLA+L +S +AL+ + N RD+E G+
Sbjct: 246 VKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKEGQ 291
>ref|NP_001098769.1| COP9 signalosome complex subunit 6 [Sus scrofa].
Length = 323
Score = 91.3 bits (225), Expect = 1e-18
Identities = 62/265 (23%), Positives = 123/265 (46%), Gaps = 4/265 (1%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAAR---VIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV 497
V LHP+++ +I D + R R VIG L+G + ++EV N F + + E+++ +
Sbjct: 37 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIII 96
Query: 498 DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQS 677
D E+ E K+V LGWY TG + +H+ +P+ L ++ +
Sbjct: 97 DKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKH 156
Query: 678 GRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK-TCFSPNRVIGLSS 854
+ + + S + + G ++F LT A + ERIGVD + + T ++
Sbjct: 157 TDLPVSVFESVIDIINGEAT-MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAE 215
Query: 855 DLQQVGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDFETML 1034
L A + + +L+Y + +G+V ++ + R +L + +P + + F+T
Sbjct: 216 HLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDF 275
Query: 1035 NSNINDLLMVTYLANLTQSQIALNE 1109
ND+ ++ YL +T++ +N+
Sbjct: 276 YDQCNDVGLMAYLGTITKTCNTMNQ 300
>ref|XP_003355036.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
H-like isoform 2 [Sus scrofa].
Length = 352
Score = 53.5 bits (127), Expect = 2e-07
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
V++ +++ I+ Y+ +G V G LLG V + +E+TNCF P + +D +++
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 507 FAKNMYELHKKVSPNELILGWYAT---GHDITEHSVLIHEYYSREAPNPIHLTVD-TSLQ 674
+ M + V+ + L +GWY + G +T + Y + L D
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTA 158
Query: 675 SGRMSIKAY 701
G +S+KAY
Sbjct: 159 QGSLSLKAY 167
>ref|XP_003125563.2| PREDICTED: eukaryotic translation initiation factor 3 subunit
H-like isoform 1 [Sus scrofa].
Length = 352
Score = 53.5 bits (127), Expect = 2e-07
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
V++ +++ I+ Y+ +G V G LLG V + +E+TNCF P + +D +++
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 507 FAKNMYELHKKVSPNELILGWYAT---GHDITEHSVLIHEYYSREAPNPIHLTVD-TSLQ 674
+ M + V+ + L +GWY + G +T + Y + L D
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTA 158
Query: 675 SGRMSIKAY 701
G +S+KAY
Sbjct: 159 QGSLSLKAY 167
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,849,906
Number of extensions: 771277
Number of successful extensions: 2615
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2590
Number of HSP's successfully gapped: 4
Length of query: 417
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 316
Effective length of database: 8,829,335
Effective search space: 2790069860
Effective search space used: 2790069860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013421
(1253 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079620.2| eukaryotic translation initiation factor 3 subu... 518 e-147
Alignment gi|NP_034947.1| 26S proteasome non-ATPase regulatory subunit 7 ... 122 8e-28
Alignment gi|NP_036132.1| COP9 signalosome complex subunit 6 [Mus musculu... 91 1e-18
Alignment gi|NP_542366.1| eukaryotic translation initiation factor 3 subu... 54 3e-07
>ref|NP_079620.2| eukaryotic translation initiation factor 3 subunit F [Mus musculus].
Length = 361
Score = 518 bits (1335), Expect = e-147
Identities = 262/266 (98%), Positives = 264/266 (99%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME
Sbjct: 96 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 155
Query: 507 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQSGRM 686
FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDT LQ GRM
Sbjct: 156 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTGLQHGRM 215
Query: 687 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 866
SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ
Sbjct: 216 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 275
Query: 867 VGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI 1046
VGGASARIQDALSTVLQYAEDVLSGKV+ADNTVGRFLMSLVNQVPKIVP+DFETMLNSNI
Sbjct: 276 VGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNI 335
Query: 1047 NDLLMVTYLANLTQSQIALNEKLVNL 1124
NDLLMVTYLANLTQSQIALNEKLVNL
Sbjct: 336 NDLLMVTYLANLTQSQIALNEKLVNL 361
>ref|NP_034947.1| 26S proteasome non-ATPase regulatory subunit 7 [Mus musculus].
Length = 321
Score = 122 bits (305), Expect = 8e-28
Identities = 82/286 (28%), Positives = 146/286 (51%), Gaps = 8/286 (2%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNE--GAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV- 497
V +HP++L S+VD + R + RV+G LLG+ K ++V+N F+VP +E + + +V
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 498 --DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSL 671
D ++ +NMY + KKV+ E I+GWY TG + ++ + I+E R PN + + +D
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKP 128
Query: 672 QSGRMSIKAYVST-LMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGL 848
+ + +AY+S + G F +T + + E +GV+ +++ + +G
Sbjct: 129 KDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDI--KDTTVGT 186
Query: 849 SSD--LQQVGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDF 1022
S QV G + L + Y E V SGK+ ++ + L + N +P ++F
Sbjct: 187 LSQRITNQVHGLKG-LNSKLLDIRSYLEKVASGKLPINHQIIYQLQDVFNLLPDASLQEF 245
Query: 1023 ETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL*RPRDSEWSRGE 1160
ND ++V YLA+L +S +AL+ + N RD+E G+
Sbjct: 246 VKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKEGQ 291
>ref|NP_036132.1| COP9 signalosome complex subunit 6 [Mus musculus].
Length = 324
Score = 91.3 bits (225), Expect = 1e-18
Identities = 62/265 (23%), Positives = 123/265 (46%), Gaps = 4/265 (1%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAAR---VIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV 497
V LHP+++ +I D + R R VIG L+G + ++EV N F + + E+++ +
Sbjct: 38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIII 97
Query: 498 DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQS 677
D E+ E K+V LGWY TG + +H+ +P+ L ++ +
Sbjct: 98 DKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKH 157
Query: 678 GRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK-TCFSPNRVIGLSS 854
+ + + S + + G ++F LT A + ERIGVD + + T ++
Sbjct: 158 TDLPVSVFESVIDIINGEAT-MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAE 216
Query: 855 DLQQVGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDFETML 1034
L A + + +L+Y + +G+V ++ + R +L + +P + + F+T
Sbjct: 217 HLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDF 276
Query: 1035 NSNINDLLMVTYLANLTQSQIALNE 1109
ND+ ++ YL +T++ +N+
Sbjct: 277 YDQCNDVGLMAYLGTITKTCNTMNQ 301
>ref|NP_542366.1| eukaryotic translation initiation factor 3 subunit H [Mus
musculus].
Length = 352
Score = 53.5 bits (127), Expect = 3e-07
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
V++ +++ I+ Y+ +G V G LLG V + +E+TNCF P + +D +++
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 507 FAKNMYELHKKVSPNELILGWYAT---GHDITEHSVLIHEYYSREAPNPIHLTVD-TSLQ 674
+ M + V+ + L +GWY + G +T + Y + L D
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTA 158
Query: 675 SGRMSIKAY 701
G +S+KAY
Sbjct: 159 QGSLSLKAY 167
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,602,714
Number of extensions: 676062
Number of successful extensions: 3391
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3341
Number of HSP's successfully gapped: 4
Length of query: 417
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 313
Effective length of database: 12,493,815
Effective search space: 3910564095
Effective search space used: 3910564095
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013421
(1253 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003745.1| eukaryotic translation initiation factor 3 subu... 521 e-148
Alignment gi|NP_002802.2| 26S proteasome non-ATPase regulatory subunit 7 ... 122 7e-28
Alignment gi|NP_006824.2| COP9 signalosome complex subunit 6 [Homo sapien... 91 2e-18
Alignment gi|NP_003747.1| eukaryotic translation initiation factor 3 subu... 54 4e-07
>ref|NP_003745.1| eukaryotic translation initiation factor 3 subunit F [Homo sapiens].
Length = 357
Score = 521 bits (1341), Expect = e-148
Identities = 263/266 (98%), Positives = 266/266 (100%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME
Sbjct: 92 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151
Query: 507 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQSGRM 686
FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQ+GRM
Sbjct: 152 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 211
Query: 687 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 866
SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ
Sbjct: 212 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 271
Query: 867 VGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI 1046
VGGASARIQDALSTVLQYAEDVLSGKV+ADNTVGRFLMSLVNQVPKIVP+DFETMLNSNI
Sbjct: 272 VGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNI 331
Query: 1047 NDLLMVTYLANLTQSQIALNEKLVNL 1124
NDLLMVTYLANLTQSQIALNEKLVNL
Sbjct: 332 NDLLMVTYLANLTQSQIALNEKLVNL 357
>ref|NP_002802.2| 26S proteasome non-ATPase regulatory subunit 7 [Homo sapiens].
Length = 324
Score = 122 bits (306), Expect = 7e-28
Identities = 81/286 (28%), Positives = 147/286 (51%), Gaps = 8/286 (2%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNE--GAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV- 497
V +HP++L S+VD + R + RV+G LLG+ K ++V+N F+VP +E + + +V
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 498 --DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSL 671
D ++ +NMY + KKV+ E I+GWY TG + ++ + I+E R PN + + +D
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKP 128
Query: 672 QSGRMSIKAYVST-LMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGL 848
+ + +AY+S + G F +T + + E +GV+ +++ + +G
Sbjct: 129 KDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDI--KDTTVGT 186
Query: 849 SSD--LQQVGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDF 1022
S QV G + L + Y E V +GK+ ++ + L + N +P + ++F
Sbjct: 187 LSQRITNQVHGLKG-LNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEF 245
Query: 1023 ETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL*RPRDSEWSRGE 1160
ND ++V YLA+L +S +AL+ + N RD+E G+
Sbjct: 246 VKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKEGQ 291
>ref|NP_006824.2| COP9 signalosome complex subunit 6 [Homo sapiens].
Length = 327
Score = 91.3 bits (225), Expect = 2e-18
Identities = 62/265 (23%), Positives = 123/265 (46%), Gaps = 4/265 (1%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAAR---VIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV 497
V LHP+++ +I D + R R VIG L+G + ++EV N F + + E+++ +
Sbjct: 41 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIII 100
Query: 498 DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQS 677
D E+ E K+V LGWY TG + +H+ +P+ L ++ +
Sbjct: 101 DKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKH 160
Query: 678 GRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK-TCFSPNRVIGLSS 854
+ + + S + + G ++F LT A + ERIGVD + + T ++
Sbjct: 161 TDLPVSVFESVIDIINGEAT-MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAE 219
Query: 855 DLQQVGGASARIQDALSTVLQYAEDVLSGKVAADNTVGRFLMSLVNQVPKIVPEDFETML 1034
L A + + +L+Y + +G+V ++ + R +L + +P + + F+T
Sbjct: 220 HLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDF 279
Query: 1035 NSNINDLLMVTYLANLTQSQIALNE 1109
ND+ ++ YL +T++ +N+
Sbjct: 280 YDQCNDVGLMAYLGTITKTCNTMNQ 304
>ref|NP_003747.1| eukaryotic translation initiation factor 3 subunit H [Homo
sapiens].
Length = 352
Score = 53.5 bits (127), Expect = 4e-07
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Frame = +3
Query: 327 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 506
V++ +++ I+ Y+ +G V G LLG V + +E+TNCF P + +D +++
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 507 FAKNMYELHKKVSPNELILGWYAT---GHDITEHSVLIHEYYSREAPNPIHLTVD-TSLQ 674
+ M + V+ + L +GWY + G +T + Y + L D
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTA 158
Query: 675 SGRMSIKAY 701
G +S+KAY
Sbjct: 159 QGSLSLKAY 167
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,872,643
Number of extensions: 805214
Number of successful extensions: 4084
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4053
Number of HSP's successfully gapped: 4
Length of query: 417
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 312
Effective length of database: 14,835,944
Effective search space: 4628814528
Effective search space used: 4628814528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013421
(1253 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 186 2e-44
gb|GL894885.2| Sus scrofa unplaced genomic scaffold ChrUScaf2769 88 1e-14
>Sscrofa_Chr09
|| Length = 153670197
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 325 tggtgcggctgcacccggtcatcttggcctccatcgtggacagctacgagcgacgcaacg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1743388 tggtgcggctgcacccggtcatcttggcctccatcgtggacagctacgagcgacgcaacg 1743329
Query: 385 agggcgccgcccgggtcatcgggaccctgctggg 418
||||||||||||||||||||||||||||||||||
Sbjct: 1743328 agggcgccgcccgggtcatcgggaccctgctggg 1743295
>gb|GL894885.2| Sus scrofa unplaced genomic scaffold ChrUScaf2769
Length = 22208
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 375 cgacgcaacgagggcgccgcccgggtcatcgggaccctgctggg 418
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19867 cgacgcaacgagggcgccgcccgggtcatcgggaccctgctggg 19910
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,077,209
Number of extensions: 66
Number of successful extensions: 66
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 1253
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1232
Effective length of database: 2,808,413,156
Effective search space: 3459965008192
Effective search space used: 3459965008192
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)