Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013433
(1658 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535072.2| PREDICTED: similar to mitochondrial ribosomal p... 486 e-137
>ref|XP_535072.2| PREDICTED: similar to mitochondrial ribosomal protein L15 [Canis
familiaris].
Length = 296
Score = 486 bits (1250), Expect = e-137
Identities = 244/296 (82%), Positives = 250/296 (84%)
Frame = +1
Query: 502 MGGPVQXXXXXXXXXXXXXXXVSLANLKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXQRG 681
M GPVQ VSLANLKPN QRG
Sbjct: 1 MAGPVQAGGARTLDLLRALPRVSLANLKPNPGSRKPERRRRGRRRGRKCGRGHKGERQRG 60
Query: 682 TRPRLGFEGGQTPFYLRIPKYGFNEGHSFRHQYQPLSLNRLQYLIDLGRVDPTQPIDLTQ 861
TRPRLGFEGGQTPFY+RIPKYGFNEGHSFR QYQPLSLNRLQYLIDLGRVDPTQPIDLTQ
Sbjct: 61 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYQPLSLNRLQYLIDLGRVDPTQPIDLTQ 120
Query: 862 LVNGRGVTIQPSKRDYGVQLVEEGADTFKAKVNIEVQMASELAIAAIEKNGGVVTTAFYD 1041
LVNGRGVTIQP KRDYGVQLVEEGADTFKAKVNIEVQ+ASELAIAAIEKNGGVVTTAFYD
Sbjct: 121 LVNGRGVTIQPLKRDYGVQLVEEGADTFKAKVNIEVQLASELAIAAIEKNGGVVTTAFYD 180
Query: 1042 PRSLEILCKPVPFFLRGQPIPKRMLPPEALVPYYTDAKNRGYLADPARFPEARLELARKY 1221
PRSLEILCKPVPFFLRGQPIPKRMLPPEALVPYYTDAKNRGYLADPA+FPEARLELA+KY
Sbjct: 181 PRSLEILCKPVPFFLRGQPIPKRMLPPEALVPYYTDAKNRGYLADPAKFPEARLELAKKY 240
Query: 1222 GYVLPDITKDELFKMLSTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLQYYSS 1389
GY+LPDITKDELFKMLSTRKDPRQIFFGLAPGWVVNM DKKILKPTDENLL+YYSS
Sbjct: 241 GYILPDITKDELFKMLSTRKDPRQIFFGLAPGWVVNMTDKKILKPTDENLLKYYSS 296
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,173,891
Number of extensions: 2200922
Number of successful extensions: 7460
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7450
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 444
Effective length of database: 15,274,216
Effective search space: 6781751904
Effective search space used: 6781751904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013433
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013433
(1658 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068913.1| 39S ribosomal protein L15, mitochondrial pre... 481 e-135
>ref|NP_001068913.1| 39S ribosomal protein L15, mitochondrial precursor [Bos taurus].
Length = 297
Score = 481 bits (1237), Expect = e-135
Identities = 238/275 (86%), Positives = 246/275 (89%)
Frame = +1
Query: 565 VSLANLKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGTRPRLGFEGGQTPFYLRIPKY 744
VSLANL+PN QRGTRPRLGFEGGQTPFYLRIPKY
Sbjct: 23 VSLANLRPNPGSRKPERRRRGQRRGRKCGRGHKGERQRGTRPRLGFEGGQTPFYLRIPKY 82
Query: 745 GFNEGHSFRHQYQPLSLNRLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQPSKRDYGVQLV 924
GFNEGHSFR QYQPLSLNRLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQPSKRDYGVQLV
Sbjct: 83 GFNEGHSFRRQYQPLSLNRLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQPSKRDYGVQLV 142
Query: 925 EEGADTFKAKVNIEVQMASELAIAAIEKNGGVVTTAFYDPRSLEILCKPVPFFLRGQPIP 1104
EEGADTFKAKVNIEVQ+ASELAIAAIEKNGGVVTTAFYDPRSLEILCKP+PFFLRGQPIP
Sbjct: 143 EEGADTFKAKVNIEVQLASELAIAAIEKNGGVVTTAFYDPRSLEILCKPIPFFLRGQPIP 202
Query: 1105 KRMLPPEALVPYYTDAKNRGYLADPARFPEARLELARKYGYVLPDITKDELFKMLSTRKD 1284
KRMLPPEALVPYYTDA+NRGYLADPARFPEARLELA+KYGY+LPDITKDELFKMLS+RKD
Sbjct: 203 KRMLPPEALVPYYTDARNRGYLADPARFPEARLELAKKYGYILPDITKDELFKMLSSRKD 262
Query: 1285 PRQIFFGLAPGWVVNMADKKILKPTDENLLQYYSS 1389
PRQIFFGLAPGWVVNMADKKILKPTDE LL+YYSS
Sbjct: 263 PRQIFFGLAPGWVVNMADKKILKPTDEKLLEYYSS 297
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,071,555
Number of extensions: 2137293
Number of successful extensions: 6998
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6973
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 445
Effective length of database: 14,140,958
Effective search space: 6292726310
Effective search space used: 6292726310
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013433
(1658 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230457.1| 39S ribosomal protein L15, mitochondrial [Su... 499 e-141
>ref|NP_001230457.1| 39S ribosomal protein L15, mitochondrial [Sus scrofa].
Length = 296
Score = 499 bits (1286), Expect = e-141
Identities = 253/296 (85%), Positives = 254/296 (85%)
Frame = +1
Query: 502 MGGPVQXXXXXXXXXXXXXXXVSLANLKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXQRG 681
MGGPVQ VSLANLKPN QRG
Sbjct: 1 MGGPVQGGGPRALDLLRALPRVSLANLKPNPGSRKPERRPRGRRRGRKCGRGHKGERQRG 60
Query: 682 TRPRLGFEGGQTPFYLRIPKYGFNEGHSFRHQYQPLSLNRLQYLIDLGRVDPTQPIDLTQ 861
TRPRLGFEGGQTPFYLRIPKYGFNEGHSFRHQYQPLSLNRLQYLIDLGRVDPTQPIDLTQ
Sbjct: 61 TRPRLGFEGGQTPFYLRIPKYGFNEGHSFRHQYQPLSLNRLQYLIDLGRVDPTQPIDLTQ 120
Query: 862 LVNGRGVTIQPSKRDYGVQLVEEGADTFKAKVNIEVQMASELAIAAIEKNGGVVTTAFYD 1041
LVNGRGVTIQPSKRDYGVQLVEEGADTFKAKVNIEVQMASELAIAAIEKNGGVVTTAFYD
Sbjct: 121 LVNGRGVTIQPSKRDYGVQLVEEGADTFKAKVNIEVQMASELAIAAIEKNGGVVTTAFYD 180
Query: 1042 PRSLEILCKPVPFFLRGQPIPKRMLPPEALVPYYTDAKNRGYLADPARFPEARLELARKY 1221
PRSLEILCKPVPFFLRGQPIPKRMLPPEALVPYYTDAKNRGYLADPARFPEARLELARKY
Sbjct: 181 PRSLEILCKPVPFFLRGQPIPKRMLPPEALVPYYTDAKNRGYLADPARFPEARLELARKY 240
Query: 1222 GYVLPDITKDELFKMLSTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLQYYSS 1389
GYVLPDITKDELFKMLSTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLL+YYSS
Sbjct: 241 GYVLPDITKDELFKMLSTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYSS 296
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,089,329
Number of extensions: 1399437
Number of successful extensions: 4627
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4612
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 448
Effective length of database: 8,754,644
Effective search space: 3922080512
Effective search space used: 3922080512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013433
(1658 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171129.1| 39S ribosomal protein L15, mitochondrial iso... 473 e-133
Alignment gi|NP_079576.1| 39S ribosomal protein L15, mitochondrial isofor... 254 1e-67
>ref|NP_001171129.1| 39S ribosomal protein L15, mitochondrial isoform 1 precursor [Mus
musculus].
Length = 295
Score = 473 bits (1216), Expect = e-133
Identities = 233/275 (84%), Positives = 244/275 (88%)
Frame = +1
Query: 565 VSLANLKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGTRPRLGFEGGQTPFYLRIPKY 744
VSLANLKP+ QRGTRPRLGFEGGQTPFY+RIPKY
Sbjct: 21 VSLANLKPSPNSRKRERRPRDRRRGRKCGRGHKGERQRGTRPRLGFEGGQTPFYIRIPKY 80
Query: 745 GFNEGHSFRHQYQPLSLNRLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQPSKRDYGVQLV 924
GFNEGHSFRHQYQPLSL RLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQP KRDYGVQLV
Sbjct: 81 GFNEGHSFRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQPLKRDYGVQLV 140
Query: 925 EEGADTFKAKVNIEVQMASELAIAAIEKNGGVVTTAFYDPRSLEILCKPVPFFLRGQPIP 1104
EEGADTF+AK+NIEVQ+ASELAIAAIEKNGGVVTTAFYDPRSLEILCKP+PFFLRGQPIP
Sbjct: 141 EEGADTFQAKINIEVQLASELAIAAIEKNGGVVTTAFYDPRSLEILCKPIPFFLRGQPIP 200
Query: 1105 KRMLPPEALVPYYTDAKNRGYLADPARFPEARLELARKYGYVLPDITKDELFKMLSTRKD 1284
KRMLPPE+LVPYYTDAKNRGYLADPA+FPEARLELA K+GYVLPDITKDELF+MLS RKD
Sbjct: 201 KRMLPPESLVPYYTDAKNRGYLADPAKFPEARLELAMKFGYVLPDITKDELFRMLSARKD 260
Query: 1285 PRQIFFGLAPGWVVNMADKKILKPTDENLLQYYSS 1389
PRQIFFGLAPGWVVNMADKKILKPTDENLL+YYSS
Sbjct: 261 PRQIFFGLAPGWVVNMADKKILKPTDENLLKYYSS 295
>ref|NP_079576.1| 39S ribosomal protein L15, mitochondrial isoform 2 precursor [Mus
musculus].
Length = 204
Score = 254 bits (649), Expect = 1e-67
Identities = 129/163 (79%), Positives = 134/163 (82%)
Frame = +1
Query: 565 VSLANLKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGTRPRLGFEGGQTPFYLRIPKY 744
VSLANLKP+ QRGTRPRLGFEGGQTPFY+RIPKY
Sbjct: 21 VSLANLKPSPNSRKRERRPRDRRRGRKCGRGHKGERQRGTRPRLGFEGGQTPFYIRIPKY 80
Query: 745 GFNEGHSFRHQYQPLSLNRLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQPSKRDYGVQLV 924
GFNEGHSFRHQYQPLSL RLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQP KRDYGVQLV
Sbjct: 81 GFNEGHSFRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQPLKRDYGVQLV 140
Query: 925 EEGADTFKAKVNIEVQMASELAIAAIEKNGGVVTTAFYDPRSL 1053
EEGADTF+AK+NIEVQ+ASELAIAAIEKNGGVVTTAFYDPRSL
Sbjct: 141 EEGADTFQAKINIEVQLASELAIAAIEKNGGVVTTAFYDPRSL 183
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 60,952,820
Number of extensions: 1763134
Number of successful extensions: 5649
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5635
Number of HSP's successfully gapped: 2
Length of query: 552
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 446
Effective length of database: 12,433,743
Effective search space: 5545449378
Effective search space used: 5545449378
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013433
(1658 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_054894.1| 39S ribosomal protein L15, mitochondrial precur... 474 e-134
>ref|NP_054894.1| 39S ribosomal protein L15, mitochondrial precursor [Homo sapiens].
Length = 296
Score = 474 bits (1221), Expect = e-134
Identities = 237/296 (80%), Positives = 248/296 (83%)
Frame = +1
Query: 502 MGGPVQXXXXXXXXXXXXXXXVSLANLKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXQRG 681
M GP+Q VSLANLKPN QRG
Sbjct: 1 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG 60
Query: 682 TRPRLGFEGGQTPFYLRIPKYGFNEGHSFRHQYQPLSLNRLQYLIDLGRVDPTQPIDLTQ 861
TRPRLGFEGGQTPFY+RIPKYGFNEGHSFR QY+PLSLNRLQYLIDLGRVDP+QPIDLTQ
Sbjct: 61 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQ 120
Query: 862 LVNGRGVTIQPSKRDYGVQLVEEGADTFKAKVNIEVQMASELAIAAIEKNGGVVTTAFYD 1041
LVNGRGVTIQP KRDYGVQLVEEGADTF AKVNIEVQ+ASELAIAAIEKNGGVVTTAFYD
Sbjct: 121 LVNGRGVTIQPLKRDYGVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD 180
Query: 1042 PRSLEILCKPVPFFLRGQPIPKRMLPPEALVPYYTDAKNRGYLADPARFPEARLELARKY 1221
PRSL+I+CKPVPFFLRGQPIPKRMLPPE LVPYYTDAKNRGYLADPA+FPEARLELARKY
Sbjct: 181 PRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKY 240
Query: 1222 GYVLPDITKDELFKMLSTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLQYYSS 1389
GY+LPDITKDELFKML TRKDPRQIFFGLAPGWVVNMADKKILKPTDENLL+YY+S
Sbjct: 241 GYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYTS 296
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,344,334
Number of extensions: 2128196
Number of successful extensions: 6842
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6831
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 444
Effective length of database: 14,737,052
Effective search space: 6543251088
Effective search space used: 6543251088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013433
(1658 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1068 0.0
Sscrofa_Chr02 585 e-164
Sscrofa_Chr14 88 2e-14
>Sscrofa_Chr04
|| Length = 143465943
Score = 1068 bits (539), Expect = 0.0
Identities = 548/551 (99%)
Strand = Plus / Minus
Query: 60 ggccatagtgtatacaactggcccagcgcaagctagtgcttcagcgtccaggtgatctta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84149449 ggccatagtgtatacaactggcccagcgcaagctagtgcttcagcgtccaggtgatctta 84149390
Query: 120 ttctgcactccacctggagctcagagacagccctgcttctaaggaccagacgttgtgaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84149389 ttctgcactccacctggagctcagagacagccctgcttctaaggaccagacgttgtgaca 84149330
Query: 180 gcacaggccagggactcctatacacagcgttttcagtgcctgcctggtgcagcgcaagag 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 84149329 gcacaggccagggactcctacacacagcgttttcagtgcctgcctggtgcagcgcaagag 84149270
Query: 240 aacgctgcacattcagagccggggtcggggcacgacctctcgaaatagcccagccccaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84149269 aacgctgcacattcagagccggggtcggggcacgacctctcgaaatagcccagccccaac 84149210
Query: 300 caactgaaaacaaagccggatcacgccgctacgaggtagacatggggagacacgtgctgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84149209 caactgaaaacaaagccggatcacgccgctacgaggtagacatggggagacacgtgctgc 84149150
Query: 360 ctccaacgcggagccggctcccggtgtgccccgcggcaagcggcgcagcggactgacagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84149149 ctccaacgcggagccggctcccggtgtgccccgcggcaagcggcgcagcggactgacagc 84149090
Query: 420 acgacaggggcggtgccgcggccgtaaagcagcgtcccagatcacgtggatcggcgccct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84149089 acgacaggggcggtgccgcggccgtaaagcagcgtcccagatcacgtggatcggcgccct 84149030
Query: 480 tgcggcttttccggcacgggttatgggcggcccggtgcagggcggtgggccccgggccct 539
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 84149029 tgcggcttttgcggcacgggttatgggcggccccgtgcagggcggtgggccccgggccct 84148970
Query: 540 ggacctgctgcgagcccttccccgtgtgagtctggccaacctgaagccgaacccgggctc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84148969 ggacctgctgcgagcccttccccgtgtgagtctggccaacctgaagccgaacccgggctc 84148910
Query: 600 caggaaaccgg 610
|||||||||||
Sbjct: 84148909 caggaaaccgg 84148899
Score = 767 bits (387), Expect = 0.0
Identities = 433/448 (96%), Gaps = 2/448 (0%)
Strand = Plus / Minus
Query: 1054 gaaattctgtgcaaacctgttccgttctttctccggggacaacccatcccgaagcgcatg 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84143057 gaaattctgtgcaaacctgttccgttctttctccggggacaacccatcccgaagcgcatg 84142998
Query: 1114 ctnnnnnnngaggcgctggtgccatactacactgatgcaaagaaccgcgggtacctggcg 1173
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84142997 ctcccccccgaggcgctggtgccatactacactgatgcaaagaaccgcgggtacctggcg 84142938
Query: 1174 gatcctgcccgatttcctgaagcaaggcttgagctcgccaggaagtacggttatgttttg 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84142937 gatcctgcccgatttcctgaagcaaggcttgagctcgccaggaagtacggttatgttttg 84142878
Query: 1234 cctgatatcactaaagacgaactcttcaaaatgctcagtactcgaaaggatccaaggcag 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84142877 cctgatatcactaaagacgaactcttcaaaatgctcagtactcgaaaggatccaaggcag 84142818
Query: 1294 attttctttggtcttgctcccggatgggtggtgaatatggcagataagaaaatcctaaaa 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84142817 attttctttggtcttgctcccggatgggtggtgaatatggcagataagaaaatcctaaaa 84142758
Query: 1354 cctacagatgagaatctcctccagtactacagctcgtgagctccttccaagagagattgt 1413
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 84142757 cctacagatgagaatctcctcaagtactacagctcgtgagctccttccaagagagattgt 84142698
Query: 1414 cagagcactggggagtggccggaaaccacgtctttcccg-ggcatgggcttaactgtaat 1472
|||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||
Sbjct: 84142697 cagagcactggggagtggccggaacacacgtctttcccgtggcatgtgcttaactgtaat 84142638
Query: 1473 tctgcagaggt-ggtgtggttgggataa 1499
||||||||||| |||||| |||| ||||
Sbjct: 84142637 tctgcagaggttggtgtgtttggtataa 84142610
Score = 335 bits (169), Expect = 5e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 763 agcttccgacaccagtatcagcctttgagtctcaatagactgcagtatcttattgacttg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84147010 agcttccgacaccagtatcagcctttgagtctcaatagactgcagtatcttattgacttg 84146951
Query: 823 ggtcgagttgatcctacacaacctattgacttaacccagcttgtcaatggcaggggtgtg 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84146950 ggtcgagttgatcctacacaacctattgacttaacccagcttgtcaatggcaggggtgtg 84146891
Query: 883 accatccagccatctaagagggattatggtgtccagctggtagaggagg 931
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84146890 accatccagccatctaagagggattatggtgtccagctggtagaggagg 84146842
Score = 309 bits (156), Expect = 3e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 609 ggaaagacgaccaagaggtcggagaagaggcagaaaatgtggcagaggccacaagggaga 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84148130 ggaaagacgaccaagaggtcggagaagaggcagaaaatgtggcagaggccacaagggaga 84148071
Query: 669 acggcagagaggaacccggccccgattgggctttgagggaggccagactccattctacct 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84148070 acggcagagaggaacccggccccgattgggctttgagggaggccagactccattctacct 84148011
Query: 729 tcgaatcccaaaatatggctttaatgaaggacatag 764
||||||||||||||||||||||||||||||||||||
Sbjct: 84148010 tcgaatcccaaaatatggctttaatgaaggacatag 84147975
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 929 agggtgccgacacctttaaggcgaaagtcaatattgaagtacagatggcttcagagctgg 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84144152 agggtgccgacacctttaaggcgaaagtcaatattgaagtacagatggcttcagagctgg 84144093
Query: 989 ccatcgctgcaatcgagaagaatgggggtgttgtcacgacggccttctacgacccgagaa 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84144092 ccatcgctgcaatcgagaagaatgggggtgttgtcacgacggccttctacgacccgagaa 84144033
Query: 1049 gcttgg 1054
||||||
Sbjct: 84144032 gcttgg 84144027
>Sscrofa_Chr02
|| Length = 162569375
Score = 585 bits (295), Expect = e-164
Identities = 748/897 (83%), Gaps = 22/897 (2%)
Strand = Plus / Plus
Query: 509 gcccggtgcagggcggtgggccccgggccctggacctgctgcgagcccttccccgtgtga 568
|||| ||||||||| || ||||| ||| |||||||||||| ||||| ||| |||| |
Sbjct: 53808927 gcccagtgcagggcactgagccccaggctctggacctgctgaaggccctgccctgtgtca 53808986
Query: 569 gtctggccaacctgaagccgaacccgggctccagga-aaccggaaagacgaccaagaggt 627
| | ||||||||||||||| || || ||||| |||| |||| ||||||| ||||||||||
Sbjct: 53808987 gcccggccaacctgaagcc-aatccaggctc-aggagaaccagaaagacaaccaagaggt 53809044
Query: 628 cg-gagaagaggcagaaaatgtggcagaggccacaagggagaacggcagagaggaacccg 686
| ||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 53809045 caagagaagaggtagaaaatgtggcagaggccacaaaggagaccggcagagaggaaccca 53809104
Query: 687 gccccgattgggctttgagggaggccagactccattctaccttcgaatcccaaaatatgg 746
|||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||
Sbjct: 53809105 gccctgattgggctttgagggaggcaagactccatttcaccttcgaatcccaacatacgg 53809164
Query: 747 ctttaatgaaggacatagcttccgacaccagtatcagcctttgagtctcaatagactgca 806
||||||||| || ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct: 53809165 gtttaatgaaagagatagcttccaacaccagtatcagcctttgagtctcagtagtttgca 53809224
Query: 807 g-tatcttattgacttgggtcgagttgatcctacacaacctattgacttaacccagcttg 865
| || ||||||||||| || || ||||||| |||||||||| | ||||||||||
Sbjct: 53809225 gttagcttattgacttttgttgaactgatccttcacaacctatcg-----acccagcttg 53809279
Query: 866 tcaatggcaggggtgtgaccatccagccatctaagagggattatggtgtccagctggtag 925
|||||| || ||||||||||| ||||||| ||| || ||||||| ||||||||||||
Sbjct: 53809280 ccaatgggagaggtgtgaccattcagccatttaaaagcaattatggaatccagctggtag 53809339
Query: 926 aggagggtgccgacacctttaaggcgaaagtcaatattgaagtacagatggcttcagagc 985
|||||||| | | ||||||| |||| |||| ||||||||||||||| ||||||||||||
Sbjct: 53809340 aggagggtactggcacctttgaggctaaagataatattgaagtacagctggcttcagagc 53809399
Query: 986 tggccatcgctgcaatcgagaagaatgggggtgttgtcacgacggccttctacgacccga 1045
||||||| ||||| ||| ||||||||||||| ||||||| | || |||||| || ||||
Sbjct: 53809400 tggccattgctgcgatcaggaagaatgggggtattgtcacaatggtcttctatgatccga 53809459
Query: 1046 gaagcttggaaattctgtgcaaacctgttccgttctttctccggggacaacccatcccga 1105
||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||||| |
Sbjct: 53809460 gaagcctggaaattctgtgcaaacctattccattctttctccgtggacaacccatcccaa 53809519
Query: 1106 agcgcatgctnnnnnnngaggcgctggtgccatactacactgatgcaaagaaccgcgggt 1165
|| | ||| | |||| ||| ||||| ||||||||||||||||| | |||||
Sbjct: 53809520 agtgaatgttttcccccaaggcaatggaaccatattacactgatgcaaagaatcacgggt 53809579
Query: 1166 acctggcggatcctgcccgatttcctgaagcaaggcttgagctcgccaggaagtacggtt 1225
| || | ||||||||| |||||| ||||||| ||| ||| | ||||
Sbjct: 53809580 atttgtcagatcctgccaaatttcc------------tgagctcaccaagaaccatggtt 53809627
Query: 1226 atgttttgcctgatatcactaaagacgaactcttcaaaatgctcagtactcgaaaggatc 1285
| |||| ||||||||||||||||| ||||||||| |||||||||||||| |||||| |
Sbjct: 53809628 ctattttacctgatatcactaaagatgaactcttcgaaatgctcagtacttaaaaggacc 53809687
Query: 1286 caaggcagattttctttggtcttgctcccggatgggtggtgaatatggcagataagaaaa 1345
|||||||||||||||||| |||||| || ||||||| |||||| || ||||||||||||
Sbjct: 53809688 caaggcagattttctttgatcttgcacctggatgggaggtgaagatagcagataagaaat 53809747
Query: 1346 tcctaaaacctacagatgagaatctcctccagtactacagctcgtgagctccttcca 1402
||||||||| | ||||||||||||||||| ||||||||||||| |||| ||| ||||
Sbjct: 53809748 tcctaaaacatgcagatgagaatctcctcaagtactacagctcatgagttccgtcca 53809804
>Sscrofa_Chr14
|| Length = 153851969
Score = 87.7 bits (44), Expect = 2e-14
Identities = 76/86 (88%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 1342 aaaatcctaaaacctacagatgagaatctcctccagtactacagctcgtgagctccttcc 1401
|||||| |||||||||||||||||||||||||| || | |||||||||||| |||||||
Sbjct: 32311859 aaaatcttaaaacctacagatgagaatctcctcgagaattacagctcgtgaattccttcc 32311800
Query: 1402 aagag---agattgtcagagcactgg 1424
||||| ||||||| ||||||||||
Sbjct: 32311799 aagagaacagattgtaagagcactgg 32311774
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,197,317
Number of extensions: 187
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 8
Length of query: 1658
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1636
Effective length of database: 2,808,408,574
Effective search space: 4594556427064
Effective search space used: 4594556427064
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)