Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013441
(975 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534884.1| PREDICTED: similar to heme binding protein 1 [C... 363 e-100
Alignment gi|XP_541125.2| PREDICTED: similar to heme binding protein 2 [C... 82 1e-15
>ref|XP_534884.1| PREDICTED: similar to heme binding protein 1 [Canis familiaris].
Length = 189
Score = 363 bits (932), Expect = e-100
Identities = 170/189 (89%), Positives = 182/189 (96%)
Frame = +1
Query: 85 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 264
MLGMIKNSLFGSVETWPWQV+S+G K+++SYEER CEGG+FATVE+TDKPVDE LREAMP
Sbjct: 1 MLGMIKNSLFGSVETWPWQVVSQGGKEEVSYEERTCEGGRFATVEVTDKPVDEGLREAMP 60
Query: 265 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 444
KVMKYVGG+NDKGIGMGMTVP+SFAVFP D GSLQKKLKVWFRIPN+FQSNPPVP+DDSI
Sbjct: 61 KVMKYVGGTNDKGIGMGMTVPVSFAVFPGDDGSLQKKLKVWFRIPNQFQSNPPVPTDDSI 120
Query: 445 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR 624
KIEERESITVYSLQFGGYAKEADYVA AAQLRTALEG ATCRSD+YFCTGYDPPMKPYGR
Sbjct: 121 KIEERESITVYSLQFGGYAKEADYVAHAAQLRTALEGTATCRSDIYFCTGYDPPMKPYGR 180
Query: 625 RNEVWLVKA 651
RNEVWLVKA
Sbjct: 181 RNEVWLVKA 189
>ref|XP_541125.2| PREDICTED: similar to heme binding protein 2 [Canis familiaris].
Length = 200
Score = 81.6 bits (200), Expect = 1e-15
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 1/178 (0%)
Frame = +1
Query: 118 SVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMPKVMKYVGGSND 297
+VET W Q SYE R K+ + + D A++ K+ Y+ G N+
Sbjct: 14 AVETPGWTAPEDAGPQPGSYEIRRYGPAKWVSTSVESLDWDAAIQTGYSKLDSYMRGKNE 73
Query: 298 KGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSIKIEERESITVY 477
+ + + MT P++ V P G + + + IP+E Q +PP PS+ + IE+R +TV+
Sbjct: 74 REMKIKMTAPVTSLVEPGSGPFSESIITISLYIPSEQQPDPPRPSESGVFIEDRAEMTVF 133
Query: 478 SLQFGGYAKEADYVARAAQLRTAL-EGIATCRSDVYFCTGYDPPMKPYGRRNEVWLVK 648
F G++ + L + L E VY+ GY+ P NEVWL++
Sbjct: 134 VRAFDGFSSAQKNQEQLLTLASILREEGKVFNEKVYYTAGYNSPFNLLDGNNEVWLIE 191
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,281,392
Number of extensions: 1274121
Number of successful extensions: 4519
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4511
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013441
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013441
(975 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069453.1| heme-binding protein 1 [Bos taurus]. 342 2e-94
Alignment gi|XP_002704436.1| PREDICTED: heme-binding protein 1-like [Bos ... 342 2e-94
Alignment gi|XP_002687788.1| PREDICTED: heme-binding protein 1-like [Bos ... 342 4e-94
Alignment gi|XP_002697071.1| PREDICTED: heme-binding protein 1-like [Bos ... 338 4e-93
Alignment gi|XP_001250961.1| PREDICTED: heme-binding protein 1-like [Bos ... 338 4e-93
Alignment gi|XP_875972.1| PREDICTED: heme-binding protein 1-like [Bos tau... 338 4e-93
Alignment gi|XP_002687858.1| PREDICTED: heme-binding protein 1-like [Bos ... 335 3e-92
Alignment gi|XP_869263.1| PREDICTED: heme-binding protein 1-like [Bos tau... 335 3e-92
Alignment gi|NP_001179142.1| heme-binding protein 2 [Bos taurus]. 91 2e-18
Alignment gi|XP_002690321.1| PREDICTED: heme binding protein 2 [Bos tauru... 91 2e-18
>ref|NP_001069453.1| heme-binding protein 1 [Bos taurus].
Length = 191
Score = 342 bits (878), Expect = 2e-94
Identities = 163/189 (86%), Positives = 174/189 (92%)
Frame = +1
Query: 85 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 264
MLGMIKNSLFGSVETWPWQVLSKG K D+ YEERACEGGKFATVE+TDKPVDEALREAMP
Sbjct: 1 MLGMIKNSLFGSVETWPWQVLSKGSKGDVFYEERACEGGKFATVEVTDKPVDEALREAMP 60
Query: 265 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 444
KVMKYVGGSNDKG+GMGMTVPISFAVFPSD G LQKKLKVWFRIPN+FQS+PP PSDDSI
Sbjct: 61 KVMKYVGGSNDKGLGMGMTVPISFAVFPSDDGDLQKKLKVWFRIPNKFQSDPPAPSDDSI 120
Query: 445 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR 624
KIE+RE ITVYS QFGGYAK ADY A+AAQLR+ALE A ++D YFCTGYDPPMKPYGR
Sbjct: 121 KIEDREGITVYSTQFGGYAKAADYAAQAAQLRSALESTAKYQTDFYFCTGYDPPMKPYGR 180
Query: 625 RNEVWLVKA 651
RNEVWLVK+
Sbjct: 181 RNEVWLVKS 189
>ref|XP_002704436.1| PREDICTED: heme-binding protein 1-like [Bos taurus].
Length = 191
Score = 342 bits (878), Expect = 2e-94
Identities = 163/189 (86%), Positives = 174/189 (92%)
Frame = +1
Query: 85 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 264
MLGMIKNSLFGSVETWPWQVLSKG K D+ YEERACEGGKFATVE+TDKPVDEALREAMP
Sbjct: 1 MLGMIKNSLFGSVETWPWQVLSKGSKGDVFYEERACEGGKFATVEVTDKPVDEALREAMP 60
Query: 265 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 444
KVMKYVGGSNDKG+GMGMTVPISFAVFPSD G LQKKLKVWFRIPN+FQS+PP PSDDSI
Sbjct: 61 KVMKYVGGSNDKGLGMGMTVPISFAVFPSDDGDLQKKLKVWFRIPNKFQSDPPAPSDDSI 120
Query: 445 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR 624
KIE+RE ITVYS QFGGYAK ADY A+AAQLR+ALE A ++D YFCTGYDPPMKPYGR
Sbjct: 121 KIEDREGITVYSTQFGGYAKAADYAAQAAQLRSALESTAKYQTDFYFCTGYDPPMKPYGR 180
Query: 625 RNEVWLVKA 651
RNEVWLVK+
Sbjct: 181 RNEVWLVKS 189
>ref|XP_002687788.1| PREDICTED: heme-binding protein 1-like [Bos taurus].
Length = 191
Score = 342 bits (876), Expect = 4e-94
Identities = 162/189 (85%), Positives = 174/189 (92%)
Frame = +1
Query: 85 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 264
MLGMIKNSLFGSVETWPWQVLSKG K D+ YEERACEGGKFATVE+TDKPVDEALREAMP
Sbjct: 1 MLGMIKNSLFGSVETWPWQVLSKGSKGDVFYEERACEGGKFATVEVTDKPVDEALREAMP 60
Query: 265 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 444
KVMKYVGGSNDKG+GMGMTVPISFAVFPSD G LQKKLKVWFRIPN+FQS+PP P DDSI
Sbjct: 61 KVMKYVGGSNDKGLGMGMTVPISFAVFPSDDGDLQKKLKVWFRIPNKFQSDPPAPRDDSI 120
Query: 445 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR 624
KIE+RE ITVYS+QFGGYAK ADY A+AAQLR+ALE A ++D YFCTGYDPPMKPYGR
Sbjct: 121 KIEDREGITVYSMQFGGYAKAADYAAQAAQLRSALESTAKYQTDFYFCTGYDPPMKPYGR 180
Query: 625 RNEVWLVKA 651
RNEVWLVK+
Sbjct: 181 RNEVWLVKS 189
>ref|XP_002697071.1| PREDICTED: heme-binding protein 1-like [Bos taurus].
Length = 191
Score = 338 bits (867), Expect = 4e-93
Identities = 161/189 (85%), Positives = 173/189 (91%)
Frame = +1
Query: 85 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 264
MLGMIKNSLFGSVETWPWQVLSKG K D+ YEERACEGGKFATVE+TDKPVDEALREAMP
Sbjct: 1 MLGMIKNSLFGSVETWPWQVLSKGSKGDVFYEERACEGGKFATVEVTDKPVDEALREAMP 60
Query: 265 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 444
KVMKYVGGSNDKG+GMGMTVPISFAVFPSD G +QKKLKVW RIPN+FQS+PP PSDDSI
Sbjct: 61 KVMKYVGGSNDKGLGMGMTVPISFAVFPSDDGDVQKKLKVWSRIPNKFQSDPPAPSDDSI 120
Query: 445 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR 624
KIE+RE ITVYS QFGGYAK ADY A+AAQLR+ALE A ++D YFCTGYDPPMKPYGR
Sbjct: 121 KIEDREGITVYSTQFGGYAKAADYTAQAAQLRSALESTAKYQTDCYFCTGYDPPMKPYGR 180
Query: 625 RNEVWLVKA 651
RNEVWLVK+
Sbjct: 181 RNEVWLVKS 189
>ref|XP_001250961.1| PREDICTED: heme-binding protein 1-like [Bos taurus].
Length = 191
Score = 338 bits (867), Expect = 4e-93
Identities = 161/189 (85%), Positives = 173/189 (91%)
Frame = +1
Query: 85 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 264
MLGMIKNSLFGSVETWPWQVLSKG K D+ YEERACEGGKFATVE+TDKPVDEALREAMP
Sbjct: 1 MLGMIKNSLFGSVETWPWQVLSKGSKGDVFYEERACEGGKFATVEVTDKPVDEALREAMP 60
Query: 265 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 444
KVMKYVGGSNDKG+GMGMTVPISFAVFPSD G +QKKLKVW RIPN+FQS+PP PSDDSI
Sbjct: 61 KVMKYVGGSNDKGLGMGMTVPISFAVFPSDDGDVQKKLKVWSRIPNKFQSDPPAPSDDSI 120
Query: 445 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR 624
KIE+RE ITVYS QFGGYAK ADY A+AAQLR+ALE A ++D YFCTGYDPPMKPYGR
Sbjct: 121 KIEDREGITVYSTQFGGYAKAADYTAQAAQLRSALESTAKYQTDCYFCTGYDPPMKPYGR 180
Query: 625 RNEVWLVKA 651
RNEVWLVK+
Sbjct: 181 RNEVWLVKS 189
>ref|XP_875972.1| PREDICTED: heme-binding protein 1-like [Bos taurus].
Length = 191
Score = 338 bits (867), Expect = 4e-93
Identities = 161/189 (85%), Positives = 173/189 (91%)
Frame = +1
Query: 85 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 264
MLGMIKNSLFGSVETWPWQVLSKG K D+ YEERACEGGKFATVE+TDKPVDEALREAMP
Sbjct: 1 MLGMIKNSLFGSVETWPWQVLSKGSKGDVFYEERACEGGKFATVEVTDKPVDEALREAMP 60
Query: 265 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 444
KVMKYVGGSNDKG+GMGMTVPISFAVFPSD G +QKKLKVW RIPN+FQS+PP PSDDSI
Sbjct: 61 KVMKYVGGSNDKGLGMGMTVPISFAVFPSDDGDVQKKLKVWSRIPNKFQSDPPAPSDDSI 120
Query: 445 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR 624
KIE+RE ITVYS QFGGYAK ADY A+AAQLR+ALE A ++D YFCTGYDPPMKPYGR
Sbjct: 121 KIEDREGITVYSTQFGGYAKAADYTAQAAQLRSALESTAKYQTDCYFCTGYDPPMKPYGR 180
Query: 625 RNEVWLVKA 651
RNEVWLVK+
Sbjct: 181 RNEVWLVKS 189
>ref|XP_002687858.1| PREDICTED: heme-binding protein 1-like [Bos taurus].
Length = 191
Score = 335 bits (860), Expect = 3e-92
Identities = 160/189 (84%), Positives = 171/189 (90%)
Frame = +1
Query: 85 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 264
MLGMIKNSLFGSVETWPWQVLSKG K D+ YEERACEGGKFATVE+TDKPVDEALREAMP
Sbjct: 1 MLGMIKNSLFGSVETWPWQVLSKGSKGDVFYEERACEGGKFATVEVTDKPVDEALREAMP 60
Query: 265 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 444
KVMKYVGGSNDKG+GMGMTVPISFAVFPSD G LQKKLKVWF IPN+FQS+PP PSDDSI
Sbjct: 61 KVMKYVGGSNDKGLGMGMTVPISFAVFPSDDGDLQKKLKVWFWIPNKFQSDPPAPSDDSI 120
Query: 445 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR 624
KIE+RE ITVYS QFGGYAK ADY A+A QLR+ALE A ++D YFCTGYDPPMKPYG
Sbjct: 121 KIEDREGITVYSTQFGGYAKAADYAAQAIQLRSALESTAKYQTDFYFCTGYDPPMKPYGH 180
Query: 625 RNEVWLVKA 651
RNEVWLVK+
Sbjct: 181 RNEVWLVKS 189
>ref|XP_869263.1| PREDICTED: heme-binding protein 1-like [Bos taurus].
Length = 191
Score = 335 bits (860), Expect = 3e-92
Identities = 160/189 (84%), Positives = 171/189 (90%)
Frame = +1
Query: 85 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 264
MLGMIKNSLFGSVETWPWQVLSKG K D+ YEERACEGGKFATVE+TDKPVDEALREAMP
Sbjct: 1 MLGMIKNSLFGSVETWPWQVLSKGSKGDVFYEERACEGGKFATVEVTDKPVDEALREAMP 60
Query: 265 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 444
KVMKYVGGSNDKG+GMGMTVPISFAVFPSD G LQKKLKVWF IPN+FQS+PP PSDDSI
Sbjct: 61 KVMKYVGGSNDKGLGMGMTVPISFAVFPSDDGDLQKKLKVWFWIPNKFQSDPPAPSDDSI 120
Query: 445 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR 624
KIE+RE ITVYS QFGGYAK ADY A+A QLR+ALE A ++D YFCTGYDPPMKPYG
Sbjct: 121 KIEDREGITVYSTQFGGYAKAADYAAQAIQLRSALESTAKYQTDFYFCTGYDPPMKPYGH 180
Query: 625 RNEVWLVKA 651
RNEVWLVK+
Sbjct: 181 RNEVWLVKS 189
>ref|NP_001179142.1| heme-binding protein 2 [Bos taurus].
Length = 205
Score = 90.9 bits (224), Expect = 2e-18
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 1/177 (0%)
Frame = +1
Query: 121 VETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMPKVMKYVGGSNDK 300
VET W+V Q SYE R K+ + + D A++ ++ Y+ G N+K
Sbjct: 20 VETPGWEVPEDAGPQPGSYEVRHYGPAKWVSTAVESMDWDSAMQTGFTRLKSYLQGKNEK 79
Query: 301 GIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSIKIEERESITVYS 480
+ + MT P++ V P G + + + IP+E QS+PP P++ + IE+R +TV+
Sbjct: 80 EMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQSDPPRPAESDVFIEDRAEMTVFV 139
Query: 481 LQFGGYAKEADYVARAAQLRTAL-EGIATCRSDVYFCTGYDPPMKPYGRRNEVWLVK 648
F G++ + L + L E VY+ GY+ P K R NEVWL++
Sbjct: 140 RSFDGFSSAQKNQEQLLTLASILREEGKVFDEKVYYTAGYNSPFKLLDRNNEVWLIQ 196
>ref|XP_002690321.1| PREDICTED: heme binding protein 2 [Bos taurus].
Length = 205
Score = 90.9 bits (224), Expect = 2e-18
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 1/177 (0%)
Frame = +1
Query: 121 VETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMPKVMKYVGGSNDK 300
VET W+V Q SYE R K+ + + D A++ ++ Y+ G N+K
Sbjct: 20 VETPGWEVPEDAGPQPGSYEVRHYGPAKWVSTAVESMDWDSAMQTGFTRLKSYLQGKNEK 79
Query: 301 GIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSIKIEERESITVYS 480
+ + MT P++ V P G + + + IP+E QS+PP P++ + IE+R +TV+
Sbjct: 80 EMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQSDPPRPAESDVFIEDRAEMTVFV 139
Query: 481 LQFGGYAKEADYVARAAQLRTAL-EGIATCRSDVYFCTGYDPPMKPYGRRNEVWLVK 648
F G++ + L + L E VY+ GY+ P K R NEVWL++
Sbjct: 140 RSFDGFSSAQKNQEQLLTLASILREEGKVFDEKVYYTAGYNSPFKLLDRNNEVWLIQ 196
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,415,168
Number of extensions: 1228899
Number of successful extensions: 4181
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4171
Number of HSP's successfully gapped: 10
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013441
(975 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001011509.1| heme-binding protein 1 [Sus scrofa]. 390 e-109
Alignment gi|XP_001928597.1| PREDICTED: heme-binding protein 2 [Sus scrof... 88 6e-18
>ref|NP_001011509.1| heme-binding protein 1 [Sus scrofa].
Length = 189
Score = 390 bits (1001), Expect = e-109
Identities = 189/189 (100%), Positives = 189/189 (100%)
Frame = +1
Query: 85 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 264
MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP
Sbjct: 1 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 60
Query: 265 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 444
KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI
Sbjct: 61 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 120
Query: 445 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR 624
KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR
Sbjct: 121 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR 180
Query: 625 RNEVWLVKA 651
RNEVWLVKA
Sbjct: 181 RNEVWLVKA 189
>ref|XP_001928597.1| PREDICTED: heme-binding protein 2 [Sus scrofa].
Length = 205
Score = 88.2 bits (217), Expect = 6e-18
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 1/178 (0%)
Frame = +1
Query: 118 SVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMPKVMKYVGGSND 297
+VET W+ Q SYE R K+ + + D A++ ++ Y+ G N+
Sbjct: 19 AVETPGWEAPEDTGPQPGSYEIRHYGPAKWVSTSVESTDWDSAIQTGFTRLNSYIQGKNE 78
Query: 298 KGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSIKIEERESITVY 477
K + + MT P++ V P G + + + IP+E QS+PP P++ ++ IE+R +TV+
Sbjct: 79 KEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQSDPPRPTESNVFIEDRAEMTVF 138
Query: 478 SLQFGGYAKEADYVARAAQLRTAL-EGIATCRSDVYFCTGYDPPMKPYGRRNEVWLVK 648
F G++ + L + L E VY+ GY P + R NEVWL++
Sbjct: 139 VRSFDGFSSAQKNQEQLLTLASVLREEGKVFDEKVYYTAGYSSPFELLDRNNEVWLIQ 196
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,732,185
Number of extensions: 795028
Number of successful extensions: 2794
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2792
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013441
(975 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038574.2| heme-binding protein 1 [Mus musculus]. 338 4e-93
Alignment gi|NP_062360.1| heme-binding protein 2 [Mus musculus]. 81 1e-15
>ref|NP_038574.2| heme-binding protein 1 [Mus musculus].
Length = 190
Score = 338 bits (867), Expect = 4e-93
Identities = 158/190 (83%), Positives = 175/190 (92%), Gaps = 1/190 (0%)
Frame = +1
Query: 85 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 264
MLGMI+NSLFGSVETWPWQVLS G K+D+SYEERACEGGKFATVE+TDKPVDEALREAMP
Sbjct: 1 MLGMIRNSLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMP 60
Query: 265 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 444
K+MKYVGG+NDKG+GMGMTVP+SFA+FP++ GSLQKKLKVWFRIPN+FQ +PP PSD+S+
Sbjct: 61 KIMKYVGGTNDKGVGMGMTVPVSFALFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESV 120
Query: 445 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGI-ATCRSDVYFCTGYDPPMKPYG 621
KIEERE ITVYS QFGGYAKEADYVA A QLRT LEG AT + DVY+C GYDPPMKPYG
Sbjct: 121 KIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYYCAGYDPPMKPYG 180
Query: 622 RRNEVWLVKA 651
RRNEVWLVKA
Sbjct: 181 RRNEVWLVKA 190
>ref|NP_062360.1| heme-binding protein 2 [Mus musculus].
Length = 205
Score = 81.3 bits (199), Expect = 1e-15
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 1/188 (0%)
Frame = +1
Query: 88 LGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMPK 267
LG+ + S ++E W+ D Q SYE R K+ + + D A++ K
Sbjct: 9 LGVAEGSEDQALEMPSWKAPEDIDPQPGSYEIRHYGPAKWVSTCVESLDWDSAIQTGFTK 68
Query: 268 VMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSIK 447
+ Y+ G N+K + + +T P++ V P + + + IP+E Q +PP PS+ +
Sbjct: 69 LNGYIQGKNEKEMKIKLTAPVTSYVEPGSSPFSESTITISLYIPSEQQPDPPRPSESDVF 128
Query: 448 IEERESITVYSLQFGGYAKEADYVARAAQLRTAL-EGIATCRSDVYFCTGYDPPMKPYGR 624
IE+R +TV+ F G++ + L L E V++ GY P + R
Sbjct: 129 IEDRAEMTVFVRSFDGFSSGQKNQEQLLTLANILREEGKVFNEKVFYTAGYSSPFQLLDR 188
Query: 625 RNEVWLVK 648
NEVWL++
Sbjct: 189 NNEVWLIQ 196
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,939,208
Number of extensions: 1047583
Number of successful extensions: 3583
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3569
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013441
(975 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057071.2| heme-binding protein 1 [Homo sapiens]. 346 2e-95
Alignment gi|NP_055135.1| heme-binding protein 2 [Homo sapiens]. 89 5e-18
>ref|NP_057071.2| heme-binding protein 1 [Homo sapiens].
Length = 189
Score = 346 bits (887), Expect = 2e-95
Identities = 160/188 (85%), Positives = 177/188 (94%)
Frame = +1
Query: 85 MLGMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMP 264
MLGMIKNSLFGSVETWPWQVLSKGDK++++YEERACEGGKFATVE+TDKPVDEALREAMP
Sbjct: 1 MLGMIKNSLFGSVETWPWQVLSKGDKEEVAYEERACEGGKFATVEVTDKPVDEALREAMP 60
Query: 265 KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSI 444
KV KY GG+NDKGIGMGMTVPISFAVFP++ GSLQKKLKVWFRIPN+FQS+PP PSD S+
Sbjct: 61 KVAKYAGGTNDKGIGMGMTVPISFAVFPNEDGSLQKKLKVWFRIPNQFQSDPPAPSDKSV 120
Query: 445 KIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSDVYFCTGYDPPMKPYGR 624
KIEERE ITVYS+QFGGYAKEADYVA+A +LR ALEG AT R D+YFCTGYDPPMKPYGR
Sbjct: 121 KIEEREGITVYSMQFGGYAKEADYVAQATRLRAALEGTATYRGDIYFCTGYDPPMKPYGR 180
Query: 625 RNEVWLVK 648
RNE+WL+K
Sbjct: 181 RNEIWLLK 188
>ref|NP_055135.1| heme-binding protein 2 [Homo sapiens].
Length = 205
Score = 89.4 bits (220), Expect = 5e-18
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 1/187 (0%)
Frame = +1
Query: 91 GMIKNSLFGSVETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKPVDEALREAMPKV 270
G +++ +VET W+ Q SYE R K+ + + D A++ K+
Sbjct: 10 GAAEDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKL 69
Query: 271 MKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDDSIKI 450
Y+ G N+K + + MT P++ V P G + + + IP+E Q +PP P + + I
Sbjct: 70 NSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFI 129
Query: 451 EERESITVYSLQFGGYAKEADYVARAAQLRTAL-EGIATCRSDVYFCTGYDPPMKPYGRR 627
E+R +TV+ F G++ + L + L E VY+ GY+ P+K R
Sbjct: 130 EDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEKVYYTAGYNSPVKLLNRN 189
Query: 628 NEVWLVK 648
NEVWL++
Sbjct: 190 NEVWLIQ 196
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,443,196
Number of extensions: 1250637
Number of successful extensions: 4209
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4202
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013441
(975 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 930 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 930 bits (469), Expect = 0.0
Identities = 485/493 (98%)
Strand = Plus / Plus
Query: 483 gcagtttggtggttacgccaaggaagctgactatgtggctcgtgccgcccagctgcgcac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62800913 gcagtttggtggttacgccaaggaagctgactatgtggctcgtgccgcccagctgcgcac 62800972
Query: 543 tgccctggagggcatagccacctgccggagtgacgtctacttctgcacaggctatgaccc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62800973 tgccctggagggcatagccacctgccggagtgacgtctacttctgcacaggctatgaccc 62801032
Query: 603 tcccatgaagccctacggacgtcgcaacgaggtctggctggtaaaggcatgagtgattga 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62801033 tcccatgaagccctacggacgtcgcaacgaggtctggctggtaaaggcatgagtgattga 62801092
Query: 663 gccagtgcatccggggtgggggaggtgccagcttctgtgcccacttcctccaggccaagc 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62801093 gccagtgcatccggggtgggggaggtgccagcttctgtgcccacttcctccaggccaagc 62801152
Query: 723 agaaacccctgggcatccccagtaaccagctctccttcatggccattcagtcactgccaa 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62801153 agaaacccctgggcatccccagtaaccagctctccttcatggccattcagtcactgccaa 62801212
Query: 783 tgttctgagataagcacattctagctcctgaggctctttttctcatggtgggaaatagta 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62801213 tgttctgagataagcacattctagctcctgaggctctttttctcatggtgggaaatagta 62801272
Query: 843 cacccacgattgatatatgtctttctaaaggactgagaaagttctgtagttgaccagaaa 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62801273 cacccacgattgatatatgtctttctaaaggactgagaaagttctgtagttgaccagaaa 62801332
Query: 903 aacccagcggcatttttccagctctctagatccctaaaaactgannnnnnnnaaatgatc 962
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 62801333 aacccagcggcatttttccagctctctagatccctaaaaactgattttttttaaatgatc 62801392
Query: 963 aaaactgtatttt 975
|||||||||||||
Sbjct: 62801393 aaaactgtatttt 62801405
Score = 365 bits (184), Expect = 3e-98
Identities = 184/184 (100%)
Strand = Plus / Minus
Query: 300 aggaattgggatgggaatgaccgttcctatttcctttgccgtgttccccagcgacggtgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62806514 aggaattgggatgggaatgaccgttcctatttcctttgccgtgttccccagcgacggtgg 62806455
Query: 360 ctccctacagaagaaattaaaagtctggttccggattccaaatgaatttcaaagcaaccc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62806454 ctccctacagaagaaattaaaagtctggttccggattccaaatgaatttcaaagcaaccc 62806395
Query: 420 accagttcccagcgatgacagcattaagatcgaggagagggaaagcatcaccgtctattc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62806394 accagttcccagcgatgacagcattaagatcgaggagagggaaagcatcaccgtctattc 62806335
Query: 480 cttg 483
||||
Sbjct: 62806334 cttg 62806331
Score = 281 bits (142), Expect = 3e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 161 agcaagatatctcctatgaggaacgggcctgtgaaggcgggaagtttgccacagtggaaa 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62807681 agcaagatatctcctatgaggaacgggcctgtgaaggcgggaagtttgccacagtggaaa 62807622
Query: 221 tgacagataagcctgtggatgaggctctacgggaagcaatgcccaaagtgatgaaatatg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62807621 tgacagataagcctgtggatgaggctctacgggaagcaatgcccaaagtgatgaaatatg 62807562
Query: 281 tgggaggttccaatgacaaagg 302
||||||||||||||||||||||
Sbjct: 62807561 tgggaggttccaatgacaaagg 62807540
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,682,657
Number of extensions: 137
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 3
Length of query: 975
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 954
Effective length of database: 2,808,413,156
Effective search space: 2679226150824
Effective search space used: 2679226150824
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)