Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013444
(1325 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092540.1| guanine nucleotide-binding protein subunit b... 724 0.0
Alignment gi|NP_786971.2| guanine nucleotide-binding protein G(I)/G(S)/G(... 374 e-103
Alignment gi|NP_001092503.1| guanine nucleotide-binding protein subunit b... 372 e-103
Alignment gi|NP_001091030.1| guanine nucleotide-binding protein G(I)/G(S)... 368 e-102
Alignment gi|NP_001179276.1| guanine nucleotide-binding protein G(I)/G(S)... 362 e-100
Alignment gi|XP_002687911.1| PREDICTED: guanine nucleotide-binding protei... 362 e-100
Alignment gi|NP_001033649.1| POC1 centriolar protein homolog A [Bos tauru... 120 3e-27
Alignment gi|NP_001178407.1| transcription initiation factor TFIID subuni... 117 2e-26
Alignment gi|XP_002698507.1| PREDICTED: TAF5 RNA polymerase II, TATA box ... 117 2e-26
Alignment gi|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus]. 105 7e-23
>ref|NP_001092540.1| guanine nucleotide-binding protein subunit beta-5 [Bos taurus].
Length = 353
Score = 724 bits (1870), Expect = 0.0
Identities = 349/353 (98%), Positives = 352/353 (99%)
Frame = +2
Query: 110 MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 289
MA DGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK
Sbjct: 1 MAADGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 60
Query: 290 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 469
GHGNKVLCMDWCKDKRR+VSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI
Sbjct: 61 GHGNKVLCMDWCKDKRRLVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 120
Query: 470 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 649
ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW
Sbjct: 121 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 180
Query: 650 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHES 829
DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC+QAFETHES
Sbjct: 181 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 240
Query: 830 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFA 1009
DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES+IFGASSVDFSLSGRLLFA
Sbjct: 241 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 300
Query: 1010 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 1168
GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
Sbjct: 301 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 353
>ref|NP_786971.2| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Bos
taurus].
Length = 340
Score = 374 bits (960), Expect = e-103
Identities = 179/341 (52%), Positives = 234/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE LK ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + +A HT YLS C F + D QI+T+SGD TCALWD+E+GQ +F
Sbjct: 124 YNLK--TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP FVSG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 TGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+AFA+GSDDATCRL+DLRAD+E+ YS +++I G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
LK R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|NP_001092503.1| guanine nucleotide-binding protein subunit beta-4 [Bos taurus].
Length = 340
Score = 372 bits (954), Expect = e-103
Identities = 177/341 (51%), Positives = 237/341 (69%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE L+ ++++ R +D L Q+ ++++G+ M+TRRTL+GH K+ M W
Sbjct: 4 LEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + + HT YLS C F + D QI+T+SGD TCALWD+E+ Q +F
Sbjct: 124 YNLK--TREGNVRVSRELPGHTGYLSCCRFLD-DSQIVTSSGDTTCALWDIETAQQTTAF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L L+P TFVSG CD + +WD+R G C Q+F H SDIN+V ++P+G
Sbjct: 181 TGHSGDVMSLSLSPDM--RTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
AFA+GSDDATCRL+DLRAD+E+ +YS +++I G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 239 YAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
LKG R +L GH+NRVS L V+ DG A +GSWD LR+W
Sbjct: 299 TLKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIW 339
>ref|NP_001091030.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Bos
taurus].
Length = 340
Score = 368 bits (945), Expect = e-102
Identities = 176/341 (51%), Positives = 232/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE L+ ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + + HT YLS C F + D QI+T+SGD TCALWD+E+GQ F
Sbjct: 124 YSLK--TREGNVRVSRELPGHTGYLSCCRFLD-DNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP G TFVSG CD +WD+R C Q F HESDIN+V ++P+G
Sbjct: 181 AGHSGDVMSLSLAPD--GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
AF +GSDDATCRL+DLRAD+E+ +YS +++I G +SV FS SGRLL AGY+D+ N+WD
Sbjct: 239 YAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+KG R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 AMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|NP_001179276.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 [Bos
taurus].
Length = 340
Score = 362 bits (930), Expect = e-100
Identities = 174/341 (51%), Positives = 232/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
+ L+ EAE LK ++ + R D L ++ +E +G+ M+TRRTL+GH K+ M W
Sbjct: 4 MEQLRQEAEQLKKQIADARKACADTTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D + +VS+SQDGK+IVWD++TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 ATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + ++ HT YLS C F + D I+T+SGD TCALWD+E+GQ F
Sbjct: 124 YSLK--SREGNVKVSRELSAHTGYLSCCRFLD-DNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH D C+ LA S F+SG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 VGHTGD--CMSLAVSPDFRLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+A +GSDDA+CRL+DLRAD+E+ Y+ ES+I G +SV FSLSGRLLFAGY+D+ NVWD
Sbjct: 239 EAICTGSDDASCRLFDLRADQELTTYAHESIICGITSVAFSLSGRLLFAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+K RV IL GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 SMKCERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIW 339
>ref|XP_002687911.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit
beta-3-like [Bos taurus].
Length = 340
Score = 362 bits (930), Expect = e-100
Identities = 174/341 (51%), Positives = 232/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
+ L+ EAE LK ++ + R D L ++ +E +G+ M+TRRTL+GH K+ M W
Sbjct: 4 MEQLRQEAEQLKKQIADARKACADTTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D + +VS+SQDGK+IVWD++TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 ATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + ++ HT YLS C F + D I+T+SGD TCALWD+E+GQ F
Sbjct: 124 YSLK--SREGNVKVSRELSAHTGYLSCCRFLD-DNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH D C+ LA S F+SG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 VGHTGD--CMSLAVSPDFRLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+A +GSDDA+CRL+DLRAD+E+ Y+ ES+I G +SV FSLSGRLLFAGY+D+ NVWD
Sbjct: 239 EAICTGSDDASCRLFDLRADQELTTYAHESIICGITSVAFSLSGRLLFAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+K RV IL GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 SMKCERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIW 339
>ref|NP_001033649.1| POC1 centriolar protein homolog A [Bos taurus].
Length = 407
Score = 120 bits (301), Expect = 3e-27
Identities = 78/296 (26%), Positives = 128/296 (43%)
Frame = +2
Query: 278 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 457
R KGH + V +D+ + +++ S S D ++VW + + V ++PS
Sbjct: 13 RHFKGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSPS 72
Query: 458 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 637
G +A G D ++ N+ + HT + + F + +TAS D T
Sbjct: 73 GHLLASGSRDKTVRIWV------PNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKT 126
Query: 638 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFE 817
+W + L S H V C +P G VS DK +WD S +C+ ++
Sbjct: 127 VKVWSTHRQKFLFSLSQHINWVRCAKFSPD--GRLIVSASDDKTVKLWDKTSRECVHSYC 184
Query: 818 THESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGR 997
H + V ++PSG A+ D T +++D+R R + Y S A S F SG
Sbjct: 185 EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALS--FHPSGN 242
Query: 998 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
L +D T+ + D+++G + L GH+ +T+ S G F SG D + VW
Sbjct: 243 YLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
>ref|NP_001178407.1| transcription initiation factor TFIID subunit 5 [Bos taurus].
Length = 800
Score = 117 bits (294), Expect = 2e-26
Identities = 72/214 (33%), Positives = 112/214 (52%)
Frame = +2
Query: 524 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 703
+E A++ K + H+ + SF+ +L++S DGT LW +++ L + GH V
Sbjct: 529 DEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPV 588
Query: 704 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGS 883
+P G FVSGG D+ A +W Q ++ F H +D+N R++P+ + A+GS
Sbjct: 589 WDTQFSPY--GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGS 646
Query: 884 DDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 1063
D T RL+D+ V I++ S+ FS +GR L G D + +WD+ G V
Sbjct: 647 ADRTVRLWDVLNGNCVRIFTGHKGPI--HSLTFSPNGRFLATGATDGRVLLWDIGHGLMV 704
Query: 1064 SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
L GH + V +LR S DG SGS D+T+R+W
Sbjct: 705 GELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 738
Score = 81.3 bits (199), Expect = 2e-15
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 2/237 (0%)
Frame = +2
Query: 206 LHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD- 382
L D E V ER+ + + + L GH V + D+ ++SSS+DG V +W
Sbjct: 515 LIDKESDDVLERI--MDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSL 572
Query: 383 -SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA 559
+FT + W ++P G GG D ++ D + + + A
Sbjct: 573 QTFTCLVGYKGHNYPVW--DTQFSPYGYYFVSGGHDRVARLWAT--DHYQPL----RIFA 624
Query: 560 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 739
H ++ F + + T S D T LWDV +G ++ F GH + L +P+ G
Sbjct: 625 GHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPN--GR 682
Query: 740 TFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRLYD 910
+G D + ++WD+ G + + H + S+R+ G+ ASGS D T RL+D
Sbjct: 683 FLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 739
>ref|XP_002698507.1| PREDICTED: TAF5 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 100kDa [Bos taurus].
Length = 800
Score = 117 bits (294), Expect = 2e-26
Identities = 72/214 (33%), Positives = 112/214 (52%)
Frame = +2
Query: 524 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 703
+E A++ K + H+ + SF+ +L++S DGT LW +++ L + GH V
Sbjct: 529 DEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPV 588
Query: 704 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGS 883
+P G FVSGG D+ A +W Q ++ F H +D+N R++P+ + A+GS
Sbjct: 589 WDTQFSPY--GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGS 646
Query: 884 DDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 1063
D T RL+D+ V I++ S+ FS +GR L G D + +WD+ G V
Sbjct: 647 ADRTVRLWDVLNGNCVRIFTGHKGPI--HSLTFSPNGRFLATGATDGRVLLWDIGHGLMV 704
Query: 1064 SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
L GH + V +LR S DG SGS D+T+R+W
Sbjct: 705 GELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 738
Score = 81.3 bits (199), Expect = 2e-15
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 2/237 (0%)
Frame = +2
Query: 206 LHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD- 382
L D E V ER+ + + + L GH V + D+ ++SSS+DG V +W
Sbjct: 515 LIDKESDDVLERI--MDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSL 572
Query: 383 -SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA 559
+FT + W ++P G GG D ++ D + + + A
Sbjct: 573 QTFTCLVGYKGHNYPVW--DTQFSPYGYYFVSGGHDRVARLWAT--DHYQPL----RIFA 624
Query: 560 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 739
H ++ F + + T S D T LWDV +G ++ F GH + L +P+ G
Sbjct: 625 GHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPN--GR 682
Query: 740 TFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRLYD 910
+G D + ++WD+ G + + H + S+R+ G+ ASGS D T RL+D
Sbjct: 683 FLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 739
>ref|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].
Length = 296
Score = 105 bits (263), Expect = 7e-23
Identities = 66/202 (32%), Positives = 97/202 (48%), Gaps = 1/202 (0%)
Frame = +2
Query: 563 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 742
H + C F+ + S D T LWD + LQ GH V + S
Sbjct: 62 HKGPVRFCRFSPDGRLFASTSCDRTIRLWDATDAKCLQVLKGHQRSVETVSF--SHDSKQ 119
Query: 743 FVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRAD 922
SGG DK+ M+W+++SGQ ++ F H + S + PS D A+GS D+T R++DLRA
Sbjct: 120 LASGGWDKRVMLWEVQSGQVLRHFVGHRDSVQSSDFAPSSDCLATGSWDSTIRMWDLRAG 179
Query: 923 REVAIYSK-ESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST 1099
+ + E S + +S SG LL +G D TI++W S + L GH V +
Sbjct: 180 TPGIFHQELEGHRGNISCLCYSPSG-LLASGSWDKTIHIWKPSTRSLLIQLKGHITWVKS 238
Query: 1100 LRVSPDGTAFCSGSWDHTLRVW 1165
+ SPDG S + H ++VW
Sbjct: 239 IAFSPDGQQLASAGYSHMVKVW 260
Score = 95.5 bits (236), Expect = 9e-20
Identities = 78/288 (27%), Positives = 125/288 (43%), Gaps = 3/288 (1%)
Frame = +2
Query: 293 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIA 472
H +V + D +R++++S+DG V W++ + + V C ++P G A
Sbjct: 20 HRGEVNSSAFSPDGQRLLTASEDGCVYGWETQSGRLLWRLRGHKGPVRFCRFSPDGRLFA 79
Query: 473 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD 652
D ++ T K + + H + SF++ Q+ + D LW+
Sbjct: 80 STSCDRTIRLWDATDAKCLQV------LKGHQRSVETVSFSHDSKQLASGGWDKRVMLWE 133
Query: 653 VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ---CIQAFETH 823
V+SGQ+L+ F GH V D APS + +G D +WD+R+G Q E H
Sbjct: 134 VQSGQVLRHFVGHRDSVQSSDFAPSS--DCLATGSWDSTIRMWDLRAGTPGIFHQELEGH 191
Query: 824 ESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLL 1003
+I+ + Y PSG ASGS D T ++ + R + I K + + S+ FS G+ L
Sbjct: 192 RGNISCLCYSPSG-LLASGSWDKTIHIWK-PSTRSLLIQLKGHITW-VKSIAFSPDGQQL 248
Query: 1004 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 1147
+ + + VWD G L G N PDG SG+ D
Sbjct: 249 ASAGYSHMVKVWDCNTGKCTETLKGVLNVAHACAFMPDGKLLVSGAVD 296
Score = 68.6 bits (166), Expect = 1e-11
Identities = 39/147 (26%), Positives = 65/147 (44%)
Frame = +2
Query: 725 SETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRL 904
S G ++ D W+ +SG+ + H+ + R+ P G FAS S D T RL
Sbjct: 30 SPDGQRLLTASEDGCVYGWETQSGRLLWRLRGHKGPVRFCRFSPDGRLFASTSCDRTIRL 89
Query: 905 YDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 1084
+D + + + +V FS + L +G D + +W+V G + GH
Sbjct: 90 WDATDAKCLQVLKGHQ--RSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRHFVGHR 147
Query: 1085 NRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+ V + +P +GSWD T+R+W
Sbjct: 148 DSVQSSDFAPSSDCLATGSWDSTIRMW 174
Score = 58.9 bits (141), Expect = 1e-08
Identities = 45/207 (21%), Positives = 84/207 (40%)
Frame = +2
Query: 269 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 448
K + LKGH V + + D +++ S D +V++W+ + V + +
Sbjct: 96 KCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRHFVGHRDSVQSSDF 155
Query: 449 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 628
APS +A G D+ ++ L + + + H +S ++ S + + + S
Sbjct: 156 APSSDCLATGSWDSTIRMWDL---RAGTPGIFHQELEGHRGNISCLCYSPSGL-LASGSW 211
Query: 629 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQ 808
D T +W + LL GH V + +P G S G VWD +G+C +
Sbjct: 212 DKTIHIWKPSTRSLLIQLKGHITWVKSIAFSPD--GQQLASAGYSHMVKVWDCNTGKCTE 269
Query: 809 AFETHESDINSVRYYPSGDAFASGSDD 889
+ + ++ + P G SG+ D
Sbjct: 270 TLKGVLNVAHACAFMPDGKLLVSGAVD 296
Score = 55.5 bits (132), Expect = 1e-07
Identities = 31/121 (25%), Positives = 52/121 (42%)
Frame = +2
Query: 803 IQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDF 982
++ F H ++NS + P G + S+D ++ ++ R ++ F
Sbjct: 14 VKFFGRHRGEVNSSAFSPDGQRLLTASEDGCVYGWETQSGR--LLWRLRGHKGPVRFCRF 71
Query: 983 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 1162
S GRL + D TI +WD + +L GH+ V T+ S D SG WD + +
Sbjct: 72 SPDGRLFASTSCDRTIRLWDATDAKCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVML 131
Query: 1163 W 1165
W
Sbjct: 132 W 132
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,237,172
Number of extensions: 1515556
Number of successful extensions: 8944
Number of sequences better than 1.0e-05: 145
Number of HSP's gapped: 7470
Number of HSP's successfully gapped: 367
Length of query: 441
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 336
Effective length of database: 14,207,134
Effective search space: 4773597024
Effective search space used: 4773597024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013444
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013444
(1325 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851178.1| PREDICTED: similar to guanine nucleotide-bindin... 709 0.0
Alignment gi|XP_863232.1| PREDICTED: similar to Guanine nucleotide-bindin... 708 0.0
Alignment gi|XP_863207.1| PREDICTED: similar to guanine nucleotide-bindin... 629 e-180
Alignment gi|NP_001003236.1| guanine nucleotide-binding protein G(I)/G(S)... 374 e-103
Alignment gi|XP_545211.1| PREDICTED: similar to guanine nucleotide-bindin... 372 e-103
Alignment gi|XP_855554.1| PREDICTED: transducin beta-3-subunit [Canis fam... 368 e-102
Alignment gi|XP_859294.1| PREDICTED: similar to guanine nucleotide-bindin... 368 e-102
Alignment gi|XP_536861.2| PREDICTED: similar to guanine nucleotide-bindin... 368 e-102
Alignment gi|XP_849538.1| PREDICTED: similar to guanine nucleotide-bindin... 368 e-102
Alignment gi|NP_001003004.1| guanine nucleotide-binding protein G(I)/G(S)... 367 e-101
>ref|XP_851178.1| PREDICTED: similar to guanine nucleotide-binding protein, beta-5
subunit isoform b isoform 1 [Canis familiaris].
Length = 395
Score = 709 bits (1829), Expect = 0.0
Identities = 342/346 (98%), Positives = 345/346 (99%)
Frame = +2
Query: 131 ENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVL 310
EN+TLASL SEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVL
Sbjct: 50 ENQTLASLLSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVL 109
Query: 311 CMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDN 490
CMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDN
Sbjct: 110 CMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDN 169
Query: 491 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 670
KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL
Sbjct: 170 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 229
Query: 671 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRY 850
LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC+QAFETHESDINSVRY
Sbjct: 230 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRY 289
Query: 851 YPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTI 1030
YPSGDAFASGSDDATCRLYDLRADREVAIYSKES+IFGASSVDFSLSGRLLFAGYNDYTI
Sbjct: 290 YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI 349
Query: 1031 NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 1168
NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
Sbjct: 350 NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 395
>ref|XP_863232.1| PREDICTED: similar to Guanine nucleotide-binding protein beta subunit
5 (Transducin beta chain 5) (Gbeta5) isoform 3 [Canis
familiaris].
Length = 398
Score = 708 bits (1827), Expect = 0.0
Identities = 344/353 (97%), Positives = 347/353 (98%), Gaps = 3/353 (0%)
Frame = +2
Query: 119 DGLHE---NETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 289
D HE N+TLASL SEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK
Sbjct: 46 DPFHEQGTNQTLASLLSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 105
Query: 290 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 469
GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI
Sbjct: 106 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 165
Query: 470 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 649
ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW
Sbjct: 166 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 225
Query: 650 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHES 829
DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC+QAFETHES
Sbjct: 226 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 285
Query: 830 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFA 1009
DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES+IFGASSVDFSLSGRLLFA
Sbjct: 286 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 345
Query: 1010 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 1168
GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
Sbjct: 346 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 398
>ref|XP_863207.1| PREDICTED: similar to guanine nucleotide-binding protein, beta-5
subunit isoform b isoform 2 [Canis familiaris].
Length = 301
Score = 629 bits (1622), Expect = e-180
Identities = 299/301 (99%), Positives = 301/301 (100%)
Frame = +2
Query: 266 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 445
MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA
Sbjct: 1 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 60
Query: 446 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 625
YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS
Sbjct: 61 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 120
Query: 626 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCI 805
GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC+
Sbjct: 121 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 180
Query: 806 QAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFS 985
QAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES+IFGASSVDFS
Sbjct: 181 QAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 240
Query: 986 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW
Sbjct: 241 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 300
Query: 1166 A 1168
A
Sbjct: 301 A 301
>ref|NP_001003236.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
[Canis lupus familiaris].
Length = 340
Score = 374 bits (960), Expect = e-103
Identities = 179/341 (52%), Positives = 234/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE LK ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + +A HT YLS C F + D QI+T+SGD TCALWD+E+GQ +F
Sbjct: 124 YNLK--TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP FVSG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 TGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+AFA+GSDDATCRL+DLRAD+E+ YS +++I G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
LK R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|XP_545211.1| PREDICTED: similar to guanine nucleotide-binding protein, beta-4
subunit [Canis familiaris].
Length = 340
Score = 372 bits (954), Expect = e-103
Identities = 177/341 (51%), Positives = 237/341 (69%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE L+ ++++ R +D L Q+ ++++G+ M+TRRTL+GH K+ M W
Sbjct: 4 LEQLRQEAEQLRNQIQDARKACNDATLIQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + + HT YLS C F + D QI+T+SGD TCALWD+E+ Q +F
Sbjct: 124 YNLK--TREGNVRVSRELPGHTGYLSCCRFLD-DSQIVTSSGDTTCALWDIETAQQTTTF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L L+P TFVSG CD + +WD+R G C Q+F H SDIN+V ++P+G
Sbjct: 181 TGHSGDVMSLSLSPDM--RTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
AFA+GSDDATCRL+DLRAD+E+ +YS +++I G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 239 YAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
LKG R +L GH+NRVS L V+ DG A +GSWD LR+W
Sbjct: 299 TLKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIW 339
>ref|XP_855554.1| PREDICTED: transducin beta-3-subunit [Canis familiaris].
Length = 340
Score = 368 bits (945), Expect = e-102
Identities = 176/341 (51%), Positives = 234/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
+ L+ EAE LK ++ + R D+ L ++ +E +G+ M+TRRTL+GH K+ M W
Sbjct: 4 MEQLRQEAEQLKKQIADARKACADITLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D + +VS+SQDGK+IVWD++TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 ATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + ++ HT YLS C F + D I+T+SGD TCALWD+E+GQ F
Sbjct: 124 YSLK--SREGNVKVSRELSAHTGYLSCCRFLD-DNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH D C+ LA S F+SG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 VGHTGD--CMSLAVSPDFKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+A +GSDDA+CRL+DLRAD+E+ YS ES+I G +SV FSLSGRLLFAGY+D+ N+WD
Sbjct: 239 EAICTGSDDASCRLFDLRADQELTAYSDESIICGITSVAFSLSGRLLFAGYDDFNCNIWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+KG RV IL GH+NRVS L V+ DG A +GSWD L+VW
Sbjct: 299 SMKGERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKVW 339
>ref|XP_859294.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 8 [Canis familiaris].
Length = 340
Score = 368 bits (945), Expect = e-102
Identities = 176/341 (51%), Positives = 232/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE L+ ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + + HT YLS C F + D QI+T+SGD TCALWD+E+GQ F
Sbjct: 124 YSLK--TREGNVRVSRELPGHTGYLSCCRFLD-DNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP G TFVSG CD +WD+R C Q F HESDIN+V ++P+G
Sbjct: 181 AGHSGDVMSLSLAPD--GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
AF +GSDDATCRL+DLRAD+E+ +YS +++I G +SV FS SGRLL AGY+D+ N+WD
Sbjct: 239 YAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+KG R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 AMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|XP_536861.2| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 1 [Canis familiaris].
Length = 340
Score = 368 bits (945), Expect = e-102
Identities = 176/341 (51%), Positives = 232/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE L+ ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + + HT YLS C F + D QI+T+SGD TCALWD+E+GQ F
Sbjct: 124 YSLK--TREGNVRVSRELPGHTGYLSCCRFLD-DNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP G TFVSG CD +WD+R C Q F HESDIN+V ++P+G
Sbjct: 181 AGHSGDVMSLSLAPD--GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
AF +GSDDATCRL+DLRAD+E+ +YS +++I G +SV FS SGRLL AGY+D+ N+WD
Sbjct: 239 YAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+KG R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 AMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|XP_849538.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 2 [Canis familiaris].
Length = 340
Score = 368 bits (945), Expect = e-102
Identities = 176/341 (51%), Positives = 232/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE L+ ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + + HT YLS C F + D QI+T+SGD TCALWD+E+GQ F
Sbjct: 124 YSLK--TREGNVRVSRELPGHTGYLSCCRFLD-DNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP G TFVSG CD +WD+R C Q F HESDIN+V ++P+G
Sbjct: 181 AGHSGDVMSLSLAPD--GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
AF +GSDDATCRL+DLRAD+E+ +YS +++I G +SV FS SGRLL AGY+D+ N+WD
Sbjct: 239 YAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+KG R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 AMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|NP_001003004.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3
[Canis lupus familiaris].
Length = 340
Score = 367 bits (942), Expect = e-101
Identities = 176/341 (51%), Positives = 233/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
+ L+ EAE LK ++ + R D L ++ +E +G+ M+TRRTL+GH K+ M W
Sbjct: 4 MEQLRQEAEQLKKQIADARKACADTTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D + +VS+SQDGK+IVWD++TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 ATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + ++ HT YLS C F + D I+T+SGD TCALWD+E+GQ F
Sbjct: 124 YSLK--SREGNVKVSRELSAHTGYLSCCRFLD-DNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH D C+ LA S F+SG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 VGHTGD--CMSLAVSPDFKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+A +GSDDA+CRL+DLRAD+E+ YS ES+I G +SV FSLSGRLLFAGY+D+ N+WD
Sbjct: 239 EAICTGSDDASCRLFDLRADQELTAYSDESIICGITSVAFSLSGRLLFAGYDDFNCNIWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+KG RV IL GH+NRVS L V+ DG A +GSWD L+VW
Sbjct: 299 SMKGERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKVW 339
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,406,187
Number of extensions: 1557017
Number of successful extensions: 9160
Number of sequences better than 1.0e-05: 191
Number of HSP's gapped: 7597
Number of HSP's successfully gapped: 432
Length of query: 441
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 335
Effective length of database: 15,340,888
Effective search space: 5139197480
Effective search space used: 5139197480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013444
(1325 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924765.1| PREDICTED: guanine nucleotide-binding protei... 728 0.0
Alignment gi|XP_003124417.1| PREDICTED: guanine nucleotide-binding protei... 368 e-102
Alignment gi|NP_001230422.1| guanine nucleotide-binding protein G(I)/G(S)... 360 1e-99
Alignment gi|XP_003354523.1| PREDICTED: guanine nucleotide-binding protei... 352 3e-97
Alignment gi|XP_003132597.2| PREDICTED: guanine nucleotide-binding protei... 234 8e-62
Alignment gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A... 125 4e-29
Alignment gi|XP_001929370.2| PREDICTED: transcription initiation factor T... 117 1e-26
Alignment gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l... 111 8e-25
Alignment gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l... 111 8e-25
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 105 7e-23
>ref|XP_001924765.1| PREDICTED: guanine nucleotide-binding protein subunit beta-5-like
[Sus scrofa].
Length = 353
Score = 728 bits (1878), Expect = 0.0
Identities = 352/353 (99%), Positives = 353/353 (100%)
Frame = +2
Query: 110 MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 289
MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK
Sbjct: 1 MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 60
Query: 290 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 469
GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI
Sbjct: 61 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 120
Query: 470 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 649
ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW
Sbjct: 121 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 180
Query: 650 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHES 829
DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHES
Sbjct: 181 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHES 240
Query: 830 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFA 1009
DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES+IFGASSVDFSLSGRLLFA
Sbjct: 241 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 300
Query: 1010 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 1168
GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
Sbjct: 301 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 353
>ref|XP_003124417.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit
beta-2-like isoform 2 [Sus scrofa].
Length = 340
Score = 368 bits (945), Expect = e-102
Identities = 176/341 (51%), Positives = 232/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE L+ ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + + HT YLS C F + D QI+T+SGD TCALWD+E+GQ F
Sbjct: 124 YSLK--TREGNVRVSRELPGHTGYLSCCRFLD-DNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP G TFVSG CD +WD+R C Q F HESDIN+V ++P+G
Sbjct: 181 AGHSGDVMSLSLAPD--GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
AF +GSDDATCRL+DLRAD+E+ +YS +++I G +SV FS SGRLL AGY+D+ N+WD
Sbjct: 239 YAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+KG R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 AMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|NP_001230422.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 [Sus
scrofa].
Length = 340
Score = 360 bits (923), Expect = 1e-99
Identities = 173/341 (50%), Positives = 230/341 (67%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
+ L+ EAE LK ++ + R D L ++ +E +G+ M+TRRTL+GH K+ M W
Sbjct: 4 MEQLRQEAEQLKKQIADARKACADTTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D + +VS+SQDGK+IVWD++TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 ATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + ++ HT YLS C F + D I+T+SGD TCALWD+E+GQ F
Sbjct: 124 YSLK--SREGNVKVSRELSAHTGYLSCCRFLD-DNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH D C+ LA S F+SG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 VGHTGD--CMSLAVSPDFKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+A +GSDDA+CRL+DLRAD+E+ YS ES+I G +SV F LSGRLLFAGY+D+ NVWD
Sbjct: 239 EAICTGSDDASCRLFDLRADQELTTYSHESIICGITSVAFPLSGRLLFAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+K RV L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 SMKCERVGTLSGHDNRVSCLGVTADGMAVATGSWDSFLKIW 339
>ref|XP_003354523.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit
beta-2-like, partial [Sus scrofa].
Length = 308
Score = 352 bits (902), Expect = 3e-97
Identities = 166/308 (53%), Positives = 216/308 (70%)
Frame = +2
Query: 242 VEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP 421
++ +G+ M+TRRTL+GH K+ M W D R +VS+SQDGK+I+WDS+TTNK HA+ +
Sbjct: 5 LDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 64
Query: 422 CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 601
+WVM CAYAPSG +ACGGLDN CS+Y L E + + HT YLS C F +
Sbjct: 65 SSWVMTCAYAPSGNFVACGGLDNICSIYSLK--TREGNVRVSRELPGHTGYLSCCRFLD- 121
Query: 602 DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 781
D QI+T+SGD TCALWD+E+GQ F GH DV+ L LAP G TFVSG CD +W
Sbjct: 122 DNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPD--GRTFVSGACDASIKLW 179
Query: 782 DMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIF 961
D+R C Q F HESDIN+V ++P+G AF +GSDDATCRL+DLRAD+E+ +YS +++I
Sbjct: 180 DVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIIC 239
Query: 962 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 1141
G +SV FS SGRLL AGY+D+ N+WD +KG R +L GH+NRVS L V+ DG A +GS
Sbjct: 240 GITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGS 299
Query: 1142 WDHTLRVW 1165
WD L++W
Sbjct: 300 WDSFLKIW 307
>ref|XP_003132597.2| PREDICTED: guanine nucleotide-binding protein subunit beta-4-like,
partial [Sus scrofa].
Length = 233
Score = 234 bits (597), Expect = 8e-62
Identities = 113/234 (48%), Positives = 154/234 (65%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE L+ ++++ R +D L Q+ ++++G+ M+TRRTL+GH K+ M W
Sbjct: 4 LEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + + HT YLS C F + D QI+T+SGD TCALWD+E+ Q +F
Sbjct: 124 YNL--KTREGNVRVSRELPGHTGYLSCCRFLD-DSQIVTSSGDTTCALWDIETAQQTTTF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSV 844
GH DV+ L L+P TFVSG CD + +WD+R G C Q+F H SDIN+V
Sbjct: 181 TGHSGDVMSLSLSPDM--RTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAV 232
Score = 60.1 bits (144), Expect = 3e-09
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 1/141 (0%)
Frame = +2
Query: 746 VSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRA-D 922
VS D K ++WD + + A S + + Y PSG+ A G D C +Y+L+ +
Sbjct: 71 VSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130
Query: 923 REVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 1102
V + + G S L + D T +WD+ + + GH V +L
Sbjct: 131 GNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTTFTGHSGDVMSL 190
Query: 1103 RVSPDGTAFCSGSWDHTLRVW 1165
+SPD F SG+ D + ++W
Sbjct: 191 SLSPDMRTFVSGACDASSKLW 211
>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
Length = 344
Score = 125 bits (315), Expect = 4e-29
Identities = 80/296 (27%), Positives = 131/296 (44%)
Frame = +2
Query: 278 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 457
R KGH + V C+D+ + +++ S S D ++VW ++ + T V ++PS
Sbjct: 13 RHFKGHRDAVTCVDFSFNMKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPS 72
Query: 458 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 637
G +A G D ++ N+ + HT + + F + +TAS D T
Sbjct: 73 GHLLASGSRDKTVRIWV------PNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKT 126
Query: 638 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFE 817
+W + L S H V C +P G VS DK +WD S +C+ ++
Sbjct: 127 IKVWSTHRQKFLFSLSQHINWVRCAKFSPD--GRLIVSASDDKTVKLWDKTSRECVHSYC 184
Query: 818 THESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGR 997
H + V ++PSG A+ D T +++D+R R + Y S A S F SG
Sbjct: 185 EHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALS--FHPSGN 242
Query: 998 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
L +D T+ + D+++G + L GH+ +T+ S G F SG D + VW
Sbjct: 243 YLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
>ref|XP_001929370.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Sus
scrofa].
Length = 662
Score = 117 bits (294), Expect = 1e-26
Identities = 72/214 (33%), Positives = 112/214 (52%)
Frame = +2
Query: 524 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 703
+E A++ K + H+ + SF+ +L++S DGT LW +++ L + GH V
Sbjct: 391 DEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPV 450
Query: 704 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGS 883
+P G FVSGG D+ A +W Q ++ F H +D+N R++P+ + A+GS
Sbjct: 451 WDTQFSPY--GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGS 508
Query: 884 DDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 1063
D T RL+D+ V I++ S+ FS +GR L G D + +WD+ G V
Sbjct: 509 ADRTVRLWDVLNGNCVRIFTGHKGPI--HSLTFSPNGRFLATGATDGRVLLWDIGHGLMV 566
Query: 1064 SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
L GH + V +LR S DG SGS D+T+R+W
Sbjct: 567 GELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 600
Score = 81.3 bits (199), Expect = 1e-15
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 2/237 (0%)
Frame = +2
Query: 206 LHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD- 382
L D E V ER+ + + + L GH V + D+ ++SSS+DG V +W
Sbjct: 377 LIDKESDDVLERI--MDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSL 434
Query: 383 -SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA 559
+FT + W ++P G GG D ++ D + + + A
Sbjct: 435 QTFTCLVGYKGHNYPVW--DTQFSPYGYYFVSGGHDRVARLWAT--DHYQPL----RIFA 486
Query: 560 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 739
H ++ F + + T S D T LWDV +G ++ F GH + L +P+ G
Sbjct: 487 GHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPN--GR 544
Query: 740 TFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRLYD 910
+G D + ++WD+ G + + H + S+R+ G+ ASGS D T RL+D
Sbjct: 545 FLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 601
>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 111 bits (278), Expect = 8e-25
Identities = 68/202 (33%), Positives = 98/202 (48%), Gaps = 1/202 (0%)
Frame = +2
Query: 563 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 742
HT + C F+ + S D T LWDV + LQ GH V + +P
Sbjct: 62 HTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDS--KQ 119
Query: 743 FVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRAD 922
SGG DK+ M+W+++SGQ ++ H I S + PS D A+GS D+T R++DLR
Sbjct: 120 LASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGG 179
Query: 923 REVAIYSK-ESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST 1099
+ + E S + FS G LL +G D TI++W S + L GH V +
Sbjct: 180 TGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKS 238
Query: 1100 LRVSPDGTAFCSGSWDHTLRVW 1165
+ SPDG S + HT++VW
Sbjct: 239 IAFSPDGLQLASAGYSHTVKVW 260
Score = 86.7 bits (213), Expect = 3e-17
Identities = 78/289 (26%), Positives = 127/289 (43%), Gaps = 4/289 (1%)
Frame = +2
Query: 293 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIA 472
H +V + D +R++++S+DG V W++ + + V C ++P G A
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFA 79
Query: 473 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD 652
D C++ K E + K H + SF+ Q+ + D LW+
Sbjct: 80 STSSD--CTIRLWDVAKVECLQVLKG----HQRSVETVSFSPDSKQLASGGWDKRVMLWE 133
Query: 653 VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCI---QAFETH 823
V+SGQ+L+ GH + D APS + +G D +WD+R G Q E H
Sbjct: 134 VQSGQVLRHLVGHRDSIQSSDFAPSS--DCLATGSWDSTIRMWDLRGGTGAIFHQELEGH 191
Query: 824 ESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSG-RL 1000
+I+ + + G ASGS D T ++ + R + + K V + S+ FS G +L
Sbjct: 192 RGNISCLCFSAFG-LLASGSWDKTIHIWK-PSTRSLLVQLKGHVTW-VKSIAFSPDGLQL 248
Query: 1001 LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 1147
AGY+ +T+ VWD G L G + + +PDG SG+ D
Sbjct: 249 ASAGYS-HTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 296
Score = 69.7 bits (169), Expect = 3e-12
Identities = 39/147 (26%), Positives = 65/147 (44%)
Frame = +2
Query: 725 SETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRL 904
S G ++ D W+ +SG+ + H + R+ P G FAS S D T RL
Sbjct: 30 SPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIRL 89
Query: 905 YDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 1084
+D+ + + +V FS + L +G D + +W+V G + L GH
Sbjct: 90 WDVAKVECLQVLKGHQ--RSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHR 147
Query: 1085 NRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+ + + +P +GSWD T+R+W
Sbjct: 148 DSIQSSDFAPSSDCLATGSWDSTIRMW 174
Score = 64.7 bits (156), Expect = 1e-10
Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 3/249 (1%)
Frame = +2
Query: 284 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 463
L GH V + D R S+S D + +WD + V +++P
Sbjct: 59 LGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSK 118
Query: 464 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 643
+A GG D + ++ + + + H + + + F S + T S D T
Sbjct: 119 QLASGGWDKRVMLWEV------QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIR 172
Query: 644 LWDVESGQ---LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAF 814
+WD+ G Q GH ++ CL + SG DK +W + +
Sbjct: 173 MWDLRGGTGAIFHQELEGHRGNISCLCFS---AFGLLASGSWDKTIHIWKPSTRSLLVQL 229
Query: 815 ETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSG 994
+ H + + S+ + P G AS T +++D R + + V+ A S F+ G
Sbjct: 230 KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGR--CTDTLKGVLDVAHSCAFTPDG 287
Query: 995 RLLFAGYND 1021
+LL +G D
Sbjct: 288 KLLVSGTAD 296
Score = 61.2 bits (147), Expect = 1e-09
Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 1/211 (0%)
Frame = +2
Query: 278 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 457
+ LKGH V + + D +++ S D +V++W+ + + + + +APS
Sbjct: 99 QVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPS 158
Query: 458 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 637
+A G D+ ++ L + A + + H +S F+ + + + S D T
Sbjct: 159 SDCLATGSWDSTIRMWDL---RGGTGAIFHQELEGHRGNISCLCFSAFGL-LASGSWDKT 214
Query: 638 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFE 817
+W + LL GH V + +P G S G VWD +G+C +
Sbjct: 215 IHIWKPSTRSLLVQLKGHVTWVKSIAFSPD--GLQLASAGYSHTVKVWDCNTGRCTDTLK 272
Query: 818 THESDINSVRYYPSGDAFASG-SDDATCRLY 907
+S + P G SG +D A C+++
Sbjct: 273 GVLDVAHSCAFTPDGKLLVSGTADQARCQVH 303
>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 111 bits (278), Expect = 8e-25
Identities = 68/202 (33%), Positives = 98/202 (48%), Gaps = 1/202 (0%)
Frame = +2
Query: 563 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 742
HT + C F+ + S D T LWDV + LQ GH V + +P
Sbjct: 62 HTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDS--KQ 119
Query: 743 FVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRAD 922
SGG DK+ M+W+++SGQ ++ H I S + PS D A+GS D+T R++DLR
Sbjct: 120 LASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGG 179
Query: 923 REVAIYSK-ESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST 1099
+ + E S + FS G LL +G D TI++W S + L GH V +
Sbjct: 180 TGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKS 238
Query: 1100 LRVSPDGTAFCSGSWDHTLRVW 1165
+ SPDG S + HT++VW
Sbjct: 239 IAFSPDGLQLASAGYSHTVKVW 260
Score = 86.7 bits (213), Expect = 3e-17
Identities = 78/289 (26%), Positives = 127/289 (43%), Gaps = 4/289 (1%)
Frame = +2
Query: 293 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIA 472
H +V + D +R++++S+DG V W++ + + V C ++P G A
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFA 79
Query: 473 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD 652
D C++ K E + K H + SF+ Q+ + D LW+
Sbjct: 80 STSSD--CTIRLWDVAKVECLQVLKG----HQRSVETVSFSPDSKQLASGGWDKRVMLWE 133
Query: 653 VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCI---QAFETH 823
V+SGQ+L+ GH + D APS + +G D +WD+R G Q E H
Sbjct: 134 VQSGQVLRHLVGHRDSIQSSDFAPSS--DCLATGSWDSTIRMWDLRGGTGAIFHQELEGH 191
Query: 824 ESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSG-RL 1000
+I+ + + G ASGS D T ++ + R + + K V + S+ FS G +L
Sbjct: 192 RGNISCLCFSAFG-LLASGSWDKTIHIWK-PSTRSLLVQLKGHVTW-VKSIAFSPDGLQL 248
Query: 1001 LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 1147
AGY+ +T+ VWD G L G + + +PDG SG+ D
Sbjct: 249 ASAGYS-HTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 296
Score = 69.7 bits (169), Expect = 3e-12
Identities = 39/147 (26%), Positives = 65/147 (44%)
Frame = +2
Query: 725 SETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRL 904
S G ++ D W+ +SG+ + H + R+ P G FAS S D T RL
Sbjct: 30 SPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIRL 89
Query: 905 YDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 1084
+D+ + + +V FS + L +G D + +W+V G + L GH
Sbjct: 90 WDVAKVECLQVLKGHQ--RSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHR 147
Query: 1085 NRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+ + + +P +GSWD T+R+W
Sbjct: 148 DSIQSSDFAPSSDCLATGSWDSTIRMW 174
Score = 64.7 bits (156), Expect = 1e-10
Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 3/249 (1%)
Frame = +2
Query: 284 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 463
L GH V + D R S+S D + +WD + V +++P
Sbjct: 59 LGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSK 118
Query: 464 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 643
+A GG D + ++ + + + H + + + F S + T S D T
Sbjct: 119 QLASGGWDKRVMLWEV------QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIR 172
Query: 644 LWDVESGQ---LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAF 814
+WD+ G Q GH ++ CL + SG DK +W + +
Sbjct: 173 MWDLRGGTGAIFHQELEGHRGNISCLCFS---AFGLLASGSWDKTIHIWKPSTRSLLVQL 229
Query: 815 ETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSG 994
+ H + + S+ + P G AS T +++D R + + V+ A S F+ G
Sbjct: 230 KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGR--CTDTLKGVLDVAHSCAFTPDG 287
Query: 995 RLLFAGYND 1021
+LL +G D
Sbjct: 288 KLLVSGTAD 296
Score = 61.2 bits (147), Expect = 1e-09
Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 1/211 (0%)
Frame = +2
Query: 278 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 457
+ LKGH V + + D +++ S D +V++W+ + + + + +APS
Sbjct: 99 QVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPS 158
Query: 458 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 637
+A G D+ ++ L + A + + H +S F+ + + + S D T
Sbjct: 159 SDCLATGSWDSTIRMWDL---RGGTGAIFHQELEGHRGNISCLCFSAFGL-LASGSWDKT 214
Query: 638 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFE 817
+W + LL GH V + +P G S G VWD +G+C +
Sbjct: 215 IHIWKPSTRSLLVQLKGHVTWVKSIAFSPD--GLQLASAGYSHTVKVWDCNTGRCTDTLK 272
Query: 818 THESDINSVRYYPSGDAFASG-SDDATCRLY 907
+S + P G SG +D A C+++
Sbjct: 273 GVLDVAHSCAFTPDGKLLVSGTADQARCQVH 303
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 105 bits (261), Expect = 7e-23
Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 3/248 (1%)
Frame = +2
Query: 431 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 610
V + ++P+G +A D ++ K E K+++ H +S ++++
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVAWSSDSNL 101
Query: 611 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 790
+++AS D T +WDV SG+ L++ GH V C + P N VSG D+ +WD++
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVK 159
Query: 791 SGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGAS 970
+G+C++ H +++V + G S S D CR++D + + + + S
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVS 218
Query: 971 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS---PDGTAFCSGS 1141
V FS +G+ + A D T+ +WD KG + GH+N + + G SGS
Sbjct: 219 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 1142 WDHTLRVW 1165
D+ + +W
Sbjct: 279 EDNLVYIW 286
Score = 93.6 bits (231), Expect = 2e-19
Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 1/210 (0%)
Frame = +2
Query: 539 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDL 718
A K ++A HT +S+ F+ + + ++S D +W G+ ++ GH + D+
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI--SDV 93
Query: 719 APSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATC 898
A S N VS DK +WD+ SG+C++ + H + + + P + SGS D +
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 899 RLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG 1078
R++D++ + + S S+V F+ G L+ + D +WD G + L
Sbjct: 154 RIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Query: 1079 HEN-RVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+N VS ++ SP+G + + D+TL++W
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 89.7 bits (221), Expect = 3e-18
Identities = 66/302 (21%), Positives = 132/302 (43%), Gaps = 7/302 (2%)
Frame = +2
Query: 281 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 460
TL GH V + + + + SSS D + +W ++ E ++ + A++
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 461 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTC 640
+ D ++ ++ K K++ H+NY+ C+F I++ S D +
Sbjct: 100 NLLVSASDDKTLKIWDVSSGK------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 641 ALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQA-FE 817
+WDV++G+ L++ H V + + G+ VS D +WD SGQC++ +
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Query: 818 THESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY----SKESVIFGASSVDFS 985
++ V++ P+G + + D T +L+D + + Y +++ IF SV
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV--- 268
Query: 986 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW--DHTLR 1159
G+ + +G D + +W++ V L GH + V + P S + D T++
Sbjct: 269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328
Query: 1160 VW 1165
+W
Sbjct: 329 LW 330
Score = 79.3 bits (194), Expect = 4e-15
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 3/216 (1%)
Frame = +2
Query: 269 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 448
K +TLKGH N V C ++ IVS S D V +WD T + V A +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 449 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 628
G I D C ++ + K + +S F+ + IL A+
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATL 234
Query: 629 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF-VSGGCDKKAMVWDMRSGQCI 805
D T LWD G+ L+++ GH + C+ S TG + VSG D +W++++ + +
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Query: 806 QAFETHESDINSVRYYPSGDAFASGS--DDATCRLY 907
Q + H + S +P+ + AS + +D T +L+
Sbjct: 295 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 78.2 bits (191), Expect = 1e-14
Identities = 59/270 (21%), Positives = 115/270 (42%), Gaps = 4/270 (1%)
Frame = +2
Query: 242 VEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP 421
++ G + K +T+ GH + + W D +VS+S D + +WD + +
Sbjct: 69 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 128
Query: 422 CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 601
+V C + P I G D ++ + K K++ H++ +SA F
Sbjct: 129 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK------CLKTLPAHSDPVSAVHFNRD 182
Query: 602 DMQILTASGDGTCALWDVESGQLLQS-FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 778
I+++S DG C +WD SGQ L++ V + +P+ G ++ D +
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKL 240
Query: 779 WDMRSGQCIQAFETHESD---INSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE 949
WD G+C++ + H+++ I + G SGS+D +++L+ V
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 300
Query: 950 SVIFGASSVDFSLSGRLLFAGYNDYTINVW 1039
+ + +++ + + A ND TI +W
Sbjct: 301 TDVVISTACHPTENIIASAALENDKTIKLW 330
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,667,263
Number of extensions: 975615
Number of successful extensions: 5794
Number of sequences better than 1.0e-05: 111
Number of HSP's gapped: 4828
Number of HSP's successfully gapped: 257
Length of query: 441
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,804,438
Effective search space: 2984704482
Effective search space used: 2984704482
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013444
(1325 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_619733.1| guanine nucleotide-binding protein subunit beta... 727 0.0
Alignment gi|NP_034443.1| guanine nucleotide-binding protein subunit beta... 727 0.0
Alignment gi|NP_001153489.1| guanine nucleotide-binding protein G(I)/G(S)... 374 e-104
Alignment gi|NP_001153488.1| guanine nucleotide-binding protein G(I)/G(S)... 374 e-104
Alignment gi|NP_032168.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 374 e-104
Alignment gi|NP_038559.2| guanine nucleotide-binding protein subunit beta... 371 e-103
Alignment gi|NP_034442.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 368 e-102
Alignment gi|NP_038558.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 366 e-101
Alignment gi|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus]. 127 3e-29
Alignment gi|NP_796316.2| transcription initiation factor TFIID subunit 5... 117 2e-26
>ref|NP_619733.1| guanine nucleotide-binding protein subunit beta-5 isoform 2 [Mus
musculus].
Length = 353
Score = 727 bits (1876), Expect = 0.0
Identities = 350/353 (99%), Positives = 353/353 (100%)
Frame = +2
Query: 110 MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 289
MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK
Sbjct: 1 MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 60
Query: 290 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 469
GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI
Sbjct: 61 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 120
Query: 470 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 649
ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW
Sbjct: 121 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 180
Query: 650 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHES 829
DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC+QAFETHES
Sbjct: 181 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 240
Query: 830 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFA 1009
D+NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES+IFGASSVDFSLSGRLLFA
Sbjct: 241 DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 300
Query: 1010 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 1168
GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
Sbjct: 301 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 353
>ref|NP_034443.1| guanine nucleotide-binding protein subunit beta-5 isoform 1 [Mus
musculus].
Length = 395
Score = 727 bits (1876), Expect = 0.0
Identities = 350/353 (99%), Positives = 353/353 (100%)
Frame = +2
Query: 110 MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 289
MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK
Sbjct: 43 MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 102
Query: 290 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 469
GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI
Sbjct: 103 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 162
Query: 470 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 649
ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW
Sbjct: 163 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 222
Query: 650 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHES 829
DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC+QAFETHES
Sbjct: 223 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 282
Query: 830 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFA 1009
D+NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES+IFGASSVDFSLSGRLLFA
Sbjct: 283 DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 342
Query: 1010 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 1168
GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
Sbjct: 343 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 395
>ref|NP_001153489.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Mus
musculus].
Length = 340
Score = 374 bits (960), Expect = e-104
Identities = 179/341 (52%), Positives = 234/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE LK ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + +A HT YLS C F + D QI+T+SGD TCALWD+E+GQ +F
Sbjct: 124 YNLK--TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP FVSG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 TGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+AFA+GSDDATCRL+DLRAD+E+ YS +++I G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
LK R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|NP_001153488.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Mus
musculus].
Length = 340
Score = 374 bits (960), Expect = e-104
Identities = 179/341 (52%), Positives = 234/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE LK ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + +A HT YLS C F + D QI+T+SGD TCALWD+E+GQ +F
Sbjct: 124 YNLK--TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP FVSG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 TGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+AFA+GSDDATCRL+DLRAD+E+ YS +++I G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
LK R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|NP_032168.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Mus
musculus].
Length = 340
Score = 374 bits (960), Expect = e-104
Identities = 179/341 (52%), Positives = 234/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE LK ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + +A HT YLS C F + D QI+T+SGD TCALWD+E+GQ +F
Sbjct: 124 YNLK--TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP FVSG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 TGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+AFA+GSDDATCRL+DLRAD+E+ YS +++I G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
LK R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|NP_038559.2| guanine nucleotide-binding protein subunit beta-4 [Mus musculus].
Length = 340
Score = 371 bits (953), Expect = e-103
Identities = 178/341 (52%), Positives = 238/341 (69%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE L+ ++++ R +D L Q+ ++++G+ M+TRRTL+GH K+ M W
Sbjct: 4 LEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + + HT YLS C F + D QI+T+SGD TCALWD+E+GQ +F
Sbjct: 124 YNLK--TREGNVRVSRELPGHTGYLSCCRFLD-DGQIITSSGDTTCALWDIETGQQTTTF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L L+P TFVSG CD + +WD+R G C Q+F H SDIN+V ++PSG
Sbjct: 181 TGHSGDVMSLSLSPDL--KTFVSGACDASSKLWDIRDGMCRQSFTGHISDINAVSFFPSG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
AFA+GSDDATCRL+DLRAD+E+ +YS +++I G +SV FS SGRLL AGY+D+ +VWD
Sbjct: 239 YAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCSVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
LKG R +L GH+NRVS L V+ DG A +GSWD LR+W
Sbjct: 299 ALKGGRSGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIW 339
>ref|NP_034442.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Mus
musculus].
Length = 340
Score = 368 bits (945), Expect = e-102
Identities = 176/341 (51%), Positives = 232/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE L+ ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + + HT YLS C F + D QI+T+SGD TCALWD+E+GQ F
Sbjct: 124 YSLK--TREGNVRVSRELPGHTGYLSCCRFLD-DNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP G TFVSG CD +WD+R C Q F HESDIN+V ++P+G
Sbjct: 181 AGHSGDVMSLSLAPD--GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
AF +GSDDATCRL+DLRAD+E+ +YS +++I G +SV FS SGRLL AGY+D+ N+WD
Sbjct: 239 YAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+KG R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 AMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|NP_038558.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 [Mus
musculus].
Length = 340
Score = 366 bits (939), Expect = e-101
Identities = 176/341 (51%), Positives = 234/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
+ L+ EAE LK ++ + R D+ L ++ +E +G+ M+TRRTL+GH K+ M W
Sbjct: 4 MEQLRQEAEQLKKQIADARKACADITLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D + +VS+SQDGK+IVWD++TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 ATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + ++ HT YLS C F + D I+T+SGD TCALWD+E+GQ F
Sbjct: 124 YNLK--SREGNVKVSRELSAHTGYLSCCRFLD-DNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH D C+ LA S F+SG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 VGHTGD--CMSLAVSPDYKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+A +GSDDA+CRL+DLRAD+E+ YS+ES+I G +SV FSLSGRLLFAGY+D+ NVWD
Sbjct: 239 EAICTGSDDASCRLFDLRADQELTAYSQESIICGITSVAFSLSGRLLFAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
LK RV IL GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 SLKCERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIW 339
>ref|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].
Length = 405
Score = 127 bits (318), Expect = 3e-29
Identities = 80/296 (27%), Positives = 130/296 (43%)
Frame = +2
Query: 278 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 457
R KGH + V C+D+ + + + S S D +++W ++ + T V ++PS
Sbjct: 13 RHFKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPS 72
Query: 458 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 637
G +A G D ++ N+ + HT + + F + ++TAS D T
Sbjct: 73 GHLLASGSRDKTVRIWV------PNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKT 126
Query: 638 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFE 817
+W + L S H V C +P G VS DK +WD S +CI ++
Sbjct: 127 VKVWSTHRQRFLFSLTQHINWVRCAKFSPD--GRLIVSASDDKTVKLWDKTSRECIHSYC 184
Query: 818 THESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGR 997
H + V ++PSG A+ D T +++D R R + Y S A S F SG
Sbjct: 185 EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALS--FHPSGN 242
Query: 998 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
L +D T+ + D+++G + L GH+ +T+ S G F SG D + VW
Sbjct: 243 YLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
>ref|NP_796316.2| transcription initiation factor TFIID subunit 5 [Mus musculus].
Length = 801
Score = 117 bits (294), Expect = 2e-26
Identities = 72/214 (33%), Positives = 112/214 (52%)
Frame = +2
Query: 524 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 703
+E A++ K + H+ + SF+ +L++S DGT LW +++ L + GH V
Sbjct: 530 DEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPV 589
Query: 704 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGS 883
+P G FVSGG D+ A +W Q ++ F H +D+N R++P+ + A+GS
Sbjct: 590 WDTQFSPY--GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGS 647
Query: 884 DDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 1063
D T RL+D+ V I++ S+ FS +GR L G D + +WD+ G V
Sbjct: 648 ADRTVRLWDVLNGNCVRIFTGHKGPI--HSLTFSPNGRFLATGATDGRVLLWDIGHGLMV 705
Query: 1064 SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
L GH + V +LR S DG SGS D+T+R+W
Sbjct: 706 GELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 739
Score = 81.6 bits (200), Expect = 1e-15
Identities = 64/250 (25%), Positives = 108/250 (43%), Gaps = 2/250 (0%)
Frame = +2
Query: 167 ESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIV 346
+ L+ + L D E V ER+ + + + L GH V + D+ ++
Sbjct: 503 KKLRSVKQASDLSLIDKESDDVLERI--MDEKTASELKILYGHSGPVYGASFSPDRNYLL 560
Query: 347 SSSQDGKVIVWD--SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 520
SSS+DG V +W +FT + W ++P G GG D ++ D
Sbjct: 561 SSSEDGTVRLWSLQTFTCLVGYKGHNYPVW--DTQFSPYGYYFVSGGHDRVARLWAT--D 616
Query: 521 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 700
+ + + A H ++ F + + T S D T LWDV +G ++ F GH
Sbjct: 617 HYQPL----RIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGP 672
Query: 701 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASG 880
+ L +P+ G +G D + ++WD+ G + + H + S+R+ G+ ASG
Sbjct: 673 IHSLTFSPN--GRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASG 730
Query: 881 SDDATCRLYD 910
S D T RL+D
Sbjct: 731 SMDNTVRLWD 740
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,378,289
Number of extensions: 1290768
Number of successful extensions: 7624
Number of sequences better than 1.0e-05: 129
Number of HSP's gapped: 6273
Number of HSP's successfully gapped: 309
Length of query: 441
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 337
Effective length of database: 12,493,815
Effective search space: 4210415655
Effective search space used: 4210415655
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013444
(1325 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006569.1| guanine nucleotide-binding protein subunit beta... 726 0.0
Alignment gi|NP_057278.2| guanine nucleotide-binding protein subunit beta... 726 0.0
Alignment gi|NP_002065.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 374 e-103
Alignment gi|NP_067642.1| guanine nucleotide-binding protein subunit beta... 372 e-103
Alignment gi|NP_005264.2| guanine nucleotide-binding protein G(I)/G(S)/G(... 368 e-102
Alignment gi|NP_002066.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 367 e-101
Alignment gi|NP_001155052.1| POC1 centriolar protein homolog A isoform 2 ... 125 1e-28
Alignment gi|NP_056241.3| POC1 centriolar protein homolog A isoform 1 [Ho... 125 1e-28
Alignment gi|NP_008882.2| transcription initiation factor TFIID subunit 5... 117 2e-26
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 109 7e-24
>ref|NP_006569.1| guanine nucleotide-binding protein subunit beta-5 isoform a [Homo
sapiens].
Length = 353
Score = 726 bits (1873), Expect = 0.0
Identities = 350/353 (99%), Positives = 353/353 (100%)
Frame = +2
Query: 110 MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 289
MAT+GLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK
Sbjct: 1 MATEGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 60
Query: 290 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 469
GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI
Sbjct: 61 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 120
Query: 470 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 649
ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW
Sbjct: 121 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 180
Query: 650 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHES 829
DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC+QAFETHES
Sbjct: 181 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 240
Query: 830 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFA 1009
DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES+IFGASSVDFSLSGRLLFA
Sbjct: 241 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 300
Query: 1010 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 1168
GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
Sbjct: 301 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 353
>ref|NP_057278.2| guanine nucleotide-binding protein subunit beta-5 isoform b [Homo
sapiens].
Length = 395
Score = 726 bits (1873), Expect = 0.0
Identities = 350/353 (99%), Positives = 353/353 (100%)
Frame = +2
Query: 110 MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 289
MAT+GLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK
Sbjct: 43 MATEGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 102
Query: 290 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 469
GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI
Sbjct: 103 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 162
Query: 470 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 649
ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW
Sbjct: 163 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 222
Query: 650 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHES 829
DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC+QAFETHES
Sbjct: 223 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 282
Query: 830 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFA 1009
DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES+IFGASSVDFSLSGRLLFA
Sbjct: 283 DINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 342
Query: 1010 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 1168
GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
Sbjct: 343 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 395
>ref|NP_002065.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
[Homo sapiens].
Length = 340
Score = 374 bits (960), Expect = e-103
Identities = 179/341 (52%), Positives = 234/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE LK ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + +A HT YLS C F + D QI+T+SGD TCALWD+E+GQ +F
Sbjct: 124 YNLK--TREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP FVSG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 TGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+AFA+GSDDATCRL+DLRAD+E+ YS +++I G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
LK R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|NP_067642.1| guanine nucleotide-binding protein subunit beta-4 [Homo sapiens].
Length = 340
Score = 372 bits (954), Expect = e-103
Identities = 177/341 (51%), Positives = 237/341 (69%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE L+ ++++ R +D L Q+ ++++G+ M+TRRTL+GH K+ M W
Sbjct: 4 LEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + + HT YLS C F + D QI+T+SGD TCALWD+E+ Q +F
Sbjct: 124 YNLK--TREGNVRVSRELPGHTGYLSCCRFLD-DSQIVTSSGDTTCALWDIETAQQTTTF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L L+P TFVSG CD + +WD+R G C Q+F H SDIN+V ++P+G
Sbjct: 181 TGHSGDVMSLSLSPDM--RTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
AFA+GSDDATCRL+DLRAD+E+ +YS +++I G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 239 YAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
LKG R +L GH+NRVS L V+ DG A +GSWD LR+W
Sbjct: 299 TLKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIW 339
>ref|NP_005264.2| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2
[Homo sapiens].
Length = 340
Score = 368 bits (945), Expect = e-102
Identities = 176/341 (51%), Positives = 232/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
L L+ EAE L+ ++ + R D L Q+ ++ +G+ M+TRRTL+GH K+ M W
Sbjct: 4 LEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D R +VS+SQDGK+I+WDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + + HT YLS C F + D QI+T+SGD TCALWD+E+GQ F
Sbjct: 124 YSLK--TREGNVRVSRELPGHTGYLSCCRFLD-DNQIITSSGDTTCALWDIETGQQTVGF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH DV+ L LAP G TFVSG CD +WD+R C Q F HESDIN+V ++P+G
Sbjct: 181 AGHSGDVMSLSLAPD--GRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
AF +GSDDATCRL+DLRAD+E+ +YS +++I G +SV FS SGRLL AGY+D+ N+WD
Sbjct: 239 YAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+KG R +L GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 AMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>ref|NP_002066.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3
[Homo sapiens].
Length = 340
Score = 367 bits (943), Expect = e-101
Identities = 177/341 (51%), Positives = 234/341 (68%)
Frame = +2
Query: 143 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 322
+ L+ EAE LK ++ + R DV L ++ +E +G+ M+TRRTL+GH K+ M W
Sbjct: 4 MEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHW 63
Query: 323 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 502
D + +VS+SQDGK+IVWDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 64 ATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSI 123
Query: 503 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 682
Y L E + ++ HT YLS C F + D I+T+SGD TCALWD+E+GQ F
Sbjct: 124 YNLK--SREGNVKVSRELSAHTGYLSCCRFLD-DNNIVTSSGDTTCALWDIETGQQKTVF 180
Query: 683 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSG 862
GH D C+ LA S N F+SG CD A +WD+R G C Q F HESDIN++ ++P+G
Sbjct: 181 VGHTGD--CMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNG 238
Query: 863 DAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWD 1042
+A +GSDDA+CRL+DLRAD+E+ +S ES+I G +SV FSLSGRLLFAGY+D+ NVWD
Sbjct: 239 EAICTGSDDASCRLFDLRADQELICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVWD 298
Query: 1043 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+K RV IL GH+NRVS L V+ DG A +GSWD L++W
Sbjct: 299 SMKSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIW 339
>ref|NP_001155052.1| POC1 centriolar protein homolog A isoform 2 [Homo sapiens].
Length = 359
Score = 125 bits (313), Expect = 1e-28
Identities = 78/296 (26%), Positives = 131/296 (44%)
Frame = +2
Query: 278 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 457
R KGH + V C+D+ + +++ S S D ++VW ++ + T V ++PS
Sbjct: 13 RHFKGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPS 72
Query: 458 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 637
G +A G D ++ N+ + HT + + F + +TAS D T
Sbjct: 73 GHLLASGSRDKTVRIWV------PNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKT 126
Query: 638 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFE 817
+W + L S H V C +P G VS DK +WD S +C+ ++
Sbjct: 127 VKVWATHRQKFLFSLSQHINWVRCAKFSPD--GRLIVSASDDKTVKLWDKSSRECVHSYC 184
Query: 818 THESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGR 997
H + V ++PSG A+ D T +++D+R R + Y S + + F SG
Sbjct: 185 EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSA--AVNGLSFHPSGN 242
Query: 998 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
L +D T+ + D+++G + L GH+ +T+ S G F SG D + VW
Sbjct: 243 YLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
>ref|NP_056241.3| POC1 centriolar protein homolog A isoform 1 [Homo sapiens].
Length = 407
Score = 125 bits (313), Expect = 1e-28
Identities = 78/296 (26%), Positives = 131/296 (44%)
Frame = +2
Query: 278 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 457
R KGH + V C+D+ + +++ S S D ++VW ++ + T V ++PS
Sbjct: 13 RHFKGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPS 72
Query: 458 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 637
G +A G D ++ N+ + HT + + F + +TAS D T
Sbjct: 73 GHLLASGSRDKTVRIWV------PNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKT 126
Query: 638 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFE 817
+W + L S H V C +P G VS DK +WD S +C+ ++
Sbjct: 127 VKVWATHRQKFLFSLSQHINWVRCAKFSPD--GRLIVSASDDKTVKLWDKSSRECVHSYC 184
Query: 818 THESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGR 997
H + V ++PSG A+ D T +++D+R R + Y S + + F SG
Sbjct: 185 EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSA--AVNGLSFHPSGN 242
Query: 998 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
L +D T+ + D+++G + L GH+ +T+ S G F SG D + VW
Sbjct: 243 YLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
>ref|NP_008882.2| transcription initiation factor TFIID subunit 5 [Homo sapiens].
Length = 800
Score = 117 bits (294), Expect = 2e-26
Identities = 72/214 (33%), Positives = 112/214 (52%)
Frame = +2
Query: 524 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 703
+E A++ K + H+ + SF+ +L++S DGT LW +++ L + GH V
Sbjct: 529 DEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPV 588
Query: 704 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGS 883
+P G FVSGG D+ A +W Q ++ F H +D+N R++P+ + A+GS
Sbjct: 589 WDTQFSPY--GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGS 646
Query: 884 DDATCRLYDLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 1063
D T RL+D+ V I++ S+ FS +GR L G D + +WD+ G V
Sbjct: 647 ADRTVRLWDVLNGNCVRIFTGHKGPI--HSLTFSPNGRFLATGATDGRVLLWDIGHGLMV 704
Query: 1064 SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
L GH + V +LR S DG SGS D+T+R+W
Sbjct: 705 GELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 738
Score = 81.6 bits (200), Expect = 1e-15
Identities = 64/250 (25%), Positives = 108/250 (43%), Gaps = 2/250 (0%)
Frame = +2
Query: 167 ESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIV 346
+ L+ + L D E V ER+ + + + L GH V + D+ ++
Sbjct: 502 KKLRSVKQASDLSLIDKESDDVLERI--MDEKTASELKILYGHSGPVYGASFSPDRNYLL 559
Query: 347 SSSQDGKVIVWD--SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 520
SSS+DG V +W +FT + W ++P G GG D ++ D
Sbjct: 560 SSSEDGTVRLWSLQTFTCLVGYKGHNYPVW--DTQFSPYGYYFVSGGHDRVARLWAT--D 615
Query: 521 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 700
+ + + A H ++ F + + T S D T LWDV +G ++ F GH
Sbjct: 616 HYQPL----RIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGP 671
Query: 701 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASG 880
+ L +P+ G +G D + ++WD+ G + + H + S+R+ G+ ASG
Sbjct: 672 IHSLTFSPN--GRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASG 729
Query: 881 SDDATCRLYD 910
S D T RL+D
Sbjct: 730 SMDNTVRLWD 739
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 109 bits (272), Expect = 7e-24
Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 1/239 (0%)
Frame = +2
Query: 455 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS-DMQILTASGD 631
SG G D C ++ + N ++ H N + A +F N +I T S D
Sbjct: 103 SGSCFITGSYDRTCKLWDTASGEELN------TLEGHRNVVYAIAFNNPYGDKIATGSFD 156
Query: 632 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQA 811
TC LW VE+G+ +F GH A+++CL P T +G D A +WD+++G+ +
Sbjct: 157 KTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQST--LVATGSMDTTAKLWDIQNGEEVYT 214
Query: 812 FETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESVIFGASSVDFSLS 991
H ++I S+ + SGD +GS D T ++D R+V I ++S ++ S
Sbjct: 215 LRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCS 274
Query: 992 GRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 1168
L+ G D T +WD G V+ L GH++ + G + S D T R+++
Sbjct: 275 --LILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFS 331
Score = 107 bits (267), Expect = 2e-23
Identities = 62/206 (30%), Positives = 100/206 (48%)
Frame = +2
Query: 548 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 727
K + H L+ + S +T S D TC LWD SG+ L + GH V + +
Sbjct: 86 KVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFN-N 144
Query: 728 ETGNTFVSGGCDKKAMVWDMRSGQCIQAFETHESDINSVRYYPSGDAFASGSDDATCRLY 907
G+ +G DK +W + +G+C F H ++I + + P A+GS D T +L+
Sbjct: 145 PYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLW 204
Query: 908 DLRADREVAIYSKESVIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN 1087
D++ EV Y+ S+ F+ SG + G D+T+ VWD G +V+IL GH
Sbjct: 205 DIQNGEEV--YTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCA 262
Query: 1088 RVSTLRVSPDGTAFCSGSWDHTLRVW 1165
+S+ + D + +GS D T ++W
Sbjct: 263 EISSASFNWDCSLILTGSMDKTCKLW 288
Score = 102 bits (255), Expect = 6e-22
Identities = 69/297 (23%), Positives = 130/297 (43%), Gaps = 2/297 (0%)
Frame = +2
Query: 281 TLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 457
TL+GH N V + + +I + S D +W T H ++ ++ P
Sbjct: 129 TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQ 188
Query: 458 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 637
+A G +D ++ + + ++ H+ + + SF S +I+T S D T
Sbjct: 189 STLVATGSMDTTAKLWDI------QNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHT 242
Query: 638 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCIQAFE 817
+WD ++G+ + GH A++ + + ++G DK +WD +G+C+
Sbjct: 243 VVVWDADTGRKVNILIGHCAEISSASF--NWDCSLILTGSMDKTCKLWDATNGKCVATLT 300
Query: 818 THESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVA-IYSKESVIFGASSVDFSLSG 994
H+ +I + +G A+ S D T R++ + +A + E I S + F+ G
Sbjct: 301 GHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEI---SKISFNPQG 357
Query: 995 RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 1165
L G +D T +WD G + +L GH + + + + G +GS D+T R+W
Sbjct: 358 NHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNTCRIW 414
Score = 99.4 bits (246), Expect = 7e-21
Identities = 63/260 (24%), Positives = 115/260 (44%), Gaps = 3/260 (1%)
Frame = +2
Query: 269 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 448
K T +GH +++C+ + + + S D +WD + + + +++ ++
Sbjct: 168 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSF 227
Query: 449 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 628
SG I G D+ V+ + N+ + H +S+ SF ILT S
Sbjct: 228 NTSGDRIITGSFDHTVVVWDADTGRKVNI------LIGHCAEISSASFNWDCSLILTGSM 281
Query: 629 DGTCALWDVESGQLLQSFHGHGADVL--CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 802
D TC LWD +G+ + + GH ++L C D TG + D A ++ + +C
Sbjct: 282 DKTCKLWDATNGKCVATLTGHDDEILDSCFDY----TGKLIATASADGTARIFSAATRKC 337
Query: 803 IQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES-VIFGASSVD 979
I E HE +I+ + + P G+ +GS D T R++D + + + + + IF S
Sbjct: 338 IAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIF---SCA 394
Query: 980 FSLSGRLLFAGYNDYTINVW 1039
F+ G ++ G D T +W
Sbjct: 395 FNYKGNIVITGSKDNTCRIW 414
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,428,843
Number of extensions: 1529944
Number of successful extensions: 8975
Number of sequences better than 1.0e-05: 163
Number of HSP's gapped: 7448
Number of HSP's successfully gapped: 388
Length of query: 441
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 335
Effective length of database: 14,802,980
Effective search space: 4958998300
Effective search space used: 4958998300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013444
(1325 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 438 e-120
Sscrofa_Chr08 295 3e-77
>Sscrofa_Chr01
|| Length = 315321322
Score = 438 bits (221), Expect = e-120
Identities = 221/221 (100%)
Strand = Plus / Plus
Query: 1 ggcggctggagctgcgccgctggcggctcggcgcccgctcgccgcacgggcctccgtcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132635660 ggcggctggagctgcgccgctggcggctcggcgcccgctcgccgcacgggcctccgtcgc 132635719
Query: 61 ccgctaactcgcatcccggtttccctgcccgccgcgtccccgcgcgaagatggcaaccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132635720 ccgctaactcgcatcccggtttccctgcccgccgcgtccccgcgcgaagatggcaaccga 132635779
Query: 121 cgggctgcatgagaacgagacgctggcgtcgctcaagagcgaggccgagagcctcaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132635780 cgggctgcatgagaacgagacgctggcgtcgctcaagagcgaggccgagagcctcaaggg 132635839
Query: 181 caaactggaggaggagcgggccaagctgcacgacgtggagc 221
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 132635840 caaactggaggaggagcgggccaagctgcacgacgtggagc 132635880
Score = 337 bits (170), Expect = 9e-90
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 992 ggtcgcctgctgtttgctggatacaatgattataccatcaatgtctgggatgtcctcaag 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132675708 ggtcgcctgctgtttgctggatacaatgattataccatcaatgtctgggatgtcctcaag 132675767
Query: 1052 ggatcccgagtctccatcctgttcggacatgaaaaccgtgttagtactctacgagtttcc 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132675768 ggatcccgagtctccatcctgttcggacatgaaaaccgtgttagtactctacgagtttcc 132675827
Query: 1112 cctgatgggactgctttttgctcaggatcatgggatcatacactcagggt 1161
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132675828 cctgatgggactgctttttgctcaggatcatgggatcatacactcagggt 132675877
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 607 gcagatcctgacggccagcggcgatggcacatgcgccctgtgggacgtggagagcgggca 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132667155 gcagatcctgacggccagcggcgatggcacatgcgccctgtgggacgtggagagcgggca 132667214
Query: 667 gctgctgcagagcttccatggccacggggccgacgtgctttgcttggacctggccccctc 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132667215 gctgctgcagagcttccatggccacggggccgacgtgctttgcttggacctggccccctc 132667274
Query: 727 agagaccgggaacacctttgtgtctgggg 755
|||||||||||||||||||||||||||||
Sbjct: 132667275 agagaccgggaacacctttgtgtctgggg 132667303
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 222 tgcaccaggtggcagagcgtgtggaggccctggggcagtttgtcatgaagaccaggagga 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132648324 tgcaccaggtggcagagcgtgtggaggccctggggcagtttgtcatgaagaccaggagga 132648383
Query: 282 ccctcaaaggccacgggaacaaggttctgtgcatggactggtgcaaggataagaggagga 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132648384 ccctcaaaggccacgggaacaaggttctgtgcatggactggtgcaaggataagaggagga 132648443
Query: 342 tcgtgagctcctcgcagg 359
||||||||||||||||||
Sbjct: 132648444 tcgtgagctcctcgcagg 132648461
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 477 gtggtttggataacaagtgttctgtgtacccactgacgtttgacaaaaatgaaaacatgg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132660802 gtggtttggataacaagtgttctgtgtacccactgacgtttgacaaaaatgaaaacatgg 132660861
Query: 537 ccgccaaaaagaagtccgttgctatgcacaccaactacctgtcagcctgcagcttcacca 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132660862 ccgccaaaaagaagtccgttgctatgcacaccaactacctgtcagcctgcagcttcacca 132660921
Query: 597 actctgacatgcag 610
||||||||||||||
Sbjct: 132660922 actctgacatgcag 132660935
Score = 242 bits (122), Expect = 4e-61
Identities = 147/156 (94%)
Strand = Plus / Plus
Query: 1159 ggtctgggcttaatcacagtgaactcatangtacctgaggatagaattttgaatcatcat 1218
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 132677290 ggtctgggcttaatcacagtgaactcataggtacctgaggatagaatttgaaatcatcat 132677349
Query: 1219 gtgtaaaatctgcttttagagggtctgagagttgaatgccacttagnctaagggagcagc 1278
||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 132677350 gtgtaaatcttgcttttagagggtctgagagttgaatgcaacttagcttaagggagcagc 132677409
Query: 1279 tccatgtctgaaagttcaccacgtgtctccaatatt 1314
||||||||||||||||||||||||||||||||||||
Sbjct: 132677410 tccatgtctgaaagttcaccacgtgtctccaatatt 132677445
Score = 190 bits (96), Expect = 1e-45
Identities = 99/100 (99%)
Strand = Plus / Plus
Query: 895 gtgtcgcctctacgacctccgggcagacagggaggttgccatctattccaaggagagtgt 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 132674602 gtgtcgcctctacgacctccgggcagacagggaggttgccatctattccaaggagagtat 132674661
Query: 955 catctttggagcttccagtgtggacttctccctcagcggt 994
||||||||||||||||||||||||||||||||||||||||
Sbjct: 132674662 catctttggagcttccagtgtggacttctccctcagcggt 132674701
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 754 gggatgtgacaagaaagccatggtgtgggacatgcgctccggccagtgcatacaggcctt 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132669206 gggatgtgacaagaaagccatggtgtgggacatgcgctccggccagtgcatacaggcctt 132669265
Query: 814 tgaaacacacgaatctgacatcaacagtgtccg 846
|||||||||||||||||||||||||||||||||
Sbjct: 132669266 tgaaacacacgaatctgacatcaacagtgtccg 132669298
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 399 aggaacacgcggtcaccatgccctgcacgtgggtgatggcatgtgcgtacgctccatcag 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132655279 aggaacacgcggtcaccatgccctgcacgtgggtgatggcatgtgcgtacgctccatcag 132655338
Query: 459 gatgtgccattgcatgtgg 477
|||||||||||||||||||
Sbjct: 132655339 gatgtgccattgcatgtgg 132655357
Score = 99.6 bits (50), Expect = 4e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 846 gatactatccgagtggagatgcctttgcttcgggatcagatgatgctacg 895
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132671953 gatactatccgagtggagatgcctttgcttcgggatcagatgatgctacg 132672002
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 356 caggatgggaaggtgatcgtgtgggattccttcaccaccaacaagg 401
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132652718 caggatgggaaggtgatcgtgtgggattccttcaccaccaacaagg 132652763
>Sscrofa_Chr08
|| Length = 148491826
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 607 gcagatcctgacggccagcggcgatggcacatgcgccctgtgggacgtggagagcgggca 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96828949 gcagatcctgacggccagcggcgatggcacatgcgccctgtgggacgtggagagcgggca 96829008
Query: 667 gctgctgcagagcttccatggccacggggccgacgtgctttgcttggacctggccccctc 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96829009 gctgctgcagagcttccatggccacggggccgacgtgctttgcttggacctggccccctc 96829068
Query: 727 agagaccgggaacacctttgtgtctgggg 755
|||||||||||||||||||||||||||||
Sbjct: 96829069 agagaccgggaacacctttgtgtctgggg 96829097
Score = 99.6 bits (50), Expect = 4e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 846 gatactatccgagtggagatgcctttgcttcgggatcagatgatgctacg 895
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96830723 gatactatccgagtggagatgcctttgcttcgggatcagatgatgctacg 96830772
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,850,135
Number of extensions: 133
Number of successful extensions: 133
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 13
Length of query: 1325
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1304
Effective length of database: 2,808,413,156
Effective search space: 3662170755424
Effective search space used: 3662170755424
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)