Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013447
(1884 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193589.1| nucleolin [Bos taurus]. 637 0.0
Alignment gi|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]. 98 2e-20
Alignment gi|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]. 94 4e-19
Alignment gi|XP_002692514.1| PREDICTED: polyadenylate-binding protein 1-l... 87 4e-17
Alignment gi|XP_882298.3| PREDICTED: polyadenylate-binding protein 1-like... 87 4e-17
Alignment gi|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]. 78 3e-14
Alignment gi|XP_002699806.1| PREDICTED: poly(A) binding protein, cytoplas... 78 3e-14
Alignment gi|XP_002686981.1| PREDICTED: RNA binding motif protein 28 isof... 69 1e-11
Alignment gi|XP_583691.3| PREDICTED: RNA binding motif protein 28 isoform... 69 1e-11
Alignment gi|NP_001193433.1| RNA-binding protein 39 [Bos taurus]. 64 4e-10
>ref|NP_001193589.1| nucleolin [Bos taurus].
Length = 720
Score = 637 bits (1644), Expect = 0.0
Identities = 332/379 (87%), Positives = 336/379 (88%)
Frame = +2
Query: 248 PVKEAPGKRXXXXXXXXXXXXXXXXXXXXTEPTTSFNLFVGNLNFSKSASELKTGISDVF 427
PVKEAPGKR TEPTTSFNLFVGNLNF+KSA ELKTGISD+F
Sbjct: 282 PVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDLF 341
Query: 428 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 607
AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD
Sbjct: 342 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 401
Query: 608 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 787
ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG
Sbjct: 402 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 461
Query: 788 TEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATF 967
TEIDGRSISLYYTGEKGQ+QD RGGKNSTWSGESKTLVLSNL+YSATEETLQEVFEKAT
Sbjct: 462 TEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATH 521
Query: 968 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 1147
IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS
Sbjct: 522 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 581
Query: 1148 KTLFVKGLSXXXXXXXLKESFDGSIRARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXX 1327
KTLFVKGLS LKESFDGSIRARIVTDRETGSSKGFGFVDFNS
Sbjct: 582 KTLFVKGLSEDTTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 641
Query: 1328 XGEIDGNKVTLDWAKPKGE 1384
GEIDGNKVTLDWAKPKGE
Sbjct: 642 DGEIDGNKVTLDWAKPKGE 660
>ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus].
Length = 645
Score = 98.2 bits (243), Expect = 2e-20
Identities = 86/336 (25%), Positives = 151/336 (44%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N +E L+E+F K +KV ++ +GKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +EI G+ I R + + R + R L++K L
Sbjct: 248 VEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L++ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 76.3 bits (186), Expect = 9e-14
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V + LKE+F + ++++ GKSKG ++ ++ DA K +EE G EI
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G+ I + +K + Q + + S + G + L + NL + +E L++ F
Sbjct: 257 TGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 62.0 bits (149), Expect = 2e-09
Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D +G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + EI G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVE 271
>ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus].
Length = 636
Score = 94.0 bits (232), Expect = 4e-19
Identities = 74/294 (25%), Positives = 136/294 (46%), Gaps = 23/294 (7%)
Frame = +2
Query: 479 FGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQD 655
+ YV+F+ D E+AL+ V G +++ + S + + KNL +
Sbjct: 54 YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNK 113
Query: 656 ELKEVFE---DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYT 826
L + F + + ++V + SKG ++ F+T+ AE+ +E+ G ++ R + +
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 827 GEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGK 997
+ + + G + + E + + N +E L+++F K A +KV +++GK
Sbjct: 174 KSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 998 SKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPRGSPNARS---------- 1138
SKG+ F+ F EDA++A++ N +E+ G+ I R + + R + R
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 1139 -QPSKTLFVKGLSXXXXXXXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L+VK L L++ F G+I + V E G SKGFGFV F+S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSS 342
Score = 75.9 bits (185), Expect = 1e-13
Identities = 71/270 (26%), Positives = 126/270 (46%), Gaps = 20/270 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-- 529
N+F+ NL+ S L S VV G S+ +G+V FE+ E E+A+E
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 530 ----LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAKNLPYKVTQDELKEVFED---AV 685
L KVF K K + + + ++ + KN + + LK++F A+
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 686 EIRLVSKD-GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGG 862
+++++ + GKSKG ++ F+ DA+K ++E G E++G+ I + +K + Q
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 278
Query: 863 KNSTWSGESKT------LVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAF 1015
K + T L + NL +E L++ F T KV + G+SKG+ F
Sbjct: 279 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGF 337
Query: 1016 IEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
+ F+S E+A +A+ N R + + + + L
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Score = 67.0 bits (162), Expect = 5e-11
Identities = 71/273 (26%), Positives = 120/273 (43%), Gaps = 16/273 (5%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ + + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG----------NIFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPR 1117
I KV ++NG SKGY F+ F + E A+ A+ N + R + R + + R
Sbjct: 121 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1118 GSP-NARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGFVDF 1285
+ AR++ +++K LK+ F ++ +++TD E+G SKGFGFV F
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSF 238
Query: 1286 NSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
E++G ++ + A+ K E
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>ref|XP_002692514.1| PREDICTED: polyadenylate-binding protein 1-like [Bos taurus].
Length = 613
Score = 87.4 bits (215), Expect = 4e-17
Identities = 80/337 (23%), Positives = 152/337 (45%), Gaps = 25/337 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V DV S + Y++F+ D E+AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
+V G I++ + + + KNL + L + F + + ++V
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ S+G ++ F+T A+ + G ++ R + + + + + + G + +
Sbjct: 132 CDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGAR----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + NL E+ LQ++F K +KV ++ +G S+G+ F+ F E+A++A
Sbjct: 188 MEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKA 247
Query: 1052 LNSCNKREIEGRAI-------RLELQGPRGSPNARSQPSK-------TLFVKGLSXXXXX 1189
+ + N RE+ GR + R+E Q + + + L+VK L
Sbjct: 248 VVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 1190 XXLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 1291
L++ F G I A+++T E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSS 342
Score = 55.8 bits (133), Expect = 1e-07
Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 18/275 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AYI F+ ADAE+ L+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIR-VCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ G + G + + NL S + L + F
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDP-------GLRKSGVGN---IFIKNLEDSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV +++G S+G+ F+ F + E A+ A+++ N + R + R E
Sbjct: 121 TFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRRER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKESFD--GSIRARIVTDRETGSSKGFGFV 1279
+ G AR+ ++VK L L++ F G + + V ++G S+GFGFV
Sbjct: 180 EVELG---ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFV 236
Query: 1280 DFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
+F E+ G + + A+ + E
Sbjct: 237 NFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVE 271
>ref|XP_882298.3| PREDICTED: polyadenylate-binding protein 1-like isoform 19 [Bos
taurus].
Length = 613
Score = 87.4 bits (215), Expect = 4e-17
Identities = 80/337 (23%), Positives = 152/337 (45%), Gaps = 25/337 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V DV S + Y++F+ D E+AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
+V G I++ + + + KNL + L + F + + ++V
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ S+G ++ F+T A+ + G ++ R + + + + + + G + +
Sbjct: 132 CDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGAR----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + NL E+ LQ++F K +KV ++ +G S+G+ F+ F E+A++A
Sbjct: 188 MEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKA 247
Query: 1052 LNSCNKREIEGRAI-------RLELQGPRGSPNARSQPSK-------TLFVKGLSXXXXX 1189
+ + N RE+ GR + R+E Q + + + L+VK L
Sbjct: 248 VVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 1190 XXLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 1291
L++ F G I A+++T E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSS 342
Score = 55.8 bits (133), Expect = 1e-07
Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 18/275 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AYI F+ ADAE+ L+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIR-VCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ G + G + + NL S + L + F
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDP-------GLRKSGVGN---IFIKNLEDSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV +++G S+G+ F+ F + E A+ A+++ N + R + R E
Sbjct: 121 TFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRRER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKESFD--GSIRARIVTDRETGSSKGFGFV 1279
+ G AR+ ++VK L L++ F G + + V ++G S+GFGFV
Sbjct: 180 EVELG---ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFV 236
Query: 1280 DFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
+F E+ G + + A+ + E
Sbjct: 237 NFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVE 271
>ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus].
Length = 382
Score = 77.8 bits (190), Expect = 3e-14
Identities = 70/296 (23%), Positives = 125/296 (42%), Gaps = 25/296 (8%)
Frame = +2
Query: 479 FGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQD 655
+GYV+F D E AL + G +L + D + + KNL +
Sbjct: 61 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNR 120
Query: 656 ELKEVFE---DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYT 826
L +F + ++V D SKG AY+ F + A A + + G ++ R + Y
Sbjct: 121 ALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV---YV 177
Query: 827 GEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGK 997
G ++ + + + N ++ L+E+F + +KV ++ +GK
Sbjct: 178 GRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGK 237
Query: 998 SKGYAFIEFASFEDAKEALNSCNKREIEGRA---------------IRLELQGPRGSPNA 1132
SKG+ F+ + + E A++A+ + + I+G+ +R + R +
Sbjct: 238 SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS 297
Query: 1133 RSQPSKTLFVKGLSXXXXXXXLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 1291
R P +++K L LKE F GSI RA+++ E G KGFG + F+S
Sbjct: 298 R-PPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMV--EVGQGKGFGVICFSS 350
Score = 62.0 bits (149), Expect = 2e-09
Identities = 69/300 (23%), Positives = 135/300 (45%), Gaps = 46/300 (15%)
Frame = +2
Query: 344 TTSFNLFVGN---LNFSKSASEL-KTGISDVFAKNDLAVVDVRI---------------- 463
T +F+L G L +S+ L K+GI ++F KN +D R
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 464 ----GVSRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGKDSK----KDRDART 616
S+ + YV F+S +A+ + G+++ ++ + + K + + + RD T
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKAT 197
Query: 617 ---LLAKNLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLE 775
+ KN + D+LKE+F + ++++ GKSKG ++ ++T A+K +
Sbjct: 198 FTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVL 257
Query: 776 EKQGTEIDGRSISLYYTGEKGQN--------QDFRGGKNSTWSGESKTLVLSNLAYSATE 931
+ G IDG+ + + +K + + R + S G + + NL + +
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETIDD 315
Query: 932 ETLQEVFEKATFIKVPQN--QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
E L+E F I + + G+ KG+ I F+SFE+A +A++ N R + + +++ L
Sbjct: 316 EKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTL 375
Score = 56.6 bits (135), Expect = 7e-08
Identities = 77/288 (26%), Positives = 114/288 (39%), Gaps = 18/288 (6%)
Frame = +2
Query: 575 PKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRL--VSKDGKSK---GIAYIE 739
P GK K + A L +L VT+D L + F A +R + +D ++ G Y+
Sbjct: 8 PAGKKKKYLKAA--LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
Query: 740 FKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAY 919
F+ ADAE L I+G+ L ++ D R K+ + + + NL
Sbjct: 66 FRFPADAEWALNTMNFDLINGKPFRLMWS-----QPDDRLRKSGIGN-----IFIKNLDK 115
Query: 920 SATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 1090
S L +F I KV + NG SKGYA++ F S A A+ N + R
Sbjct: 116 SIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 1091 IRLELQGPRGSPNARSQPSKT--------LFVKGLSXXXXXXXLKESFD--GSIRARIVT 1240
+ + G P R+ +T +FVK LKE F G + V
Sbjct: 175 VYV---GRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVI 231
Query: 1241 DRETGSSKGFGFVDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
+G SKGFGFV + + IDG + + A+ K E
Sbjct: 232 RDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>ref|XP_002699806.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Bos taurus].
Length = 382
Score = 77.8 bits (190), Expect = 3e-14
Identities = 70/296 (23%), Positives = 125/296 (42%), Gaps = 25/296 (8%)
Frame = +2
Query: 479 FGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQD 655
+GYV+F D E AL + G +L + D + + KNL +
Sbjct: 61 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNR 120
Query: 656 ELKEVFE---DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYT 826
L +F + ++V D SKG AY+ F + A A + + G ++ R + Y
Sbjct: 121 ALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV---YV 177
Query: 827 GEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGK 997
G ++ + + + N ++ L+E+F + +KV ++ +GK
Sbjct: 178 GRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGK 237
Query: 998 SKGYAFIEFASFEDAKEALNSCNKREIEGRA---------------IRLELQGPRGSPNA 1132
SKG+ F+ + + E A++A+ + + I+G+ +R + R +
Sbjct: 238 SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS 297
Query: 1133 RSQPSKTLFVKGLSXXXXXXXLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 1291
R P +++K L LKE F GSI RA+++ E G KGFG + F+S
Sbjct: 298 R-PPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMV--EVGQGKGFGVICFSS 350
Score = 62.0 bits (149), Expect = 2e-09
Identities = 69/300 (23%), Positives = 135/300 (45%), Gaps = 46/300 (15%)
Frame = +2
Query: 344 TTSFNLFVGN---LNFSKSASEL-KTGISDVFAKNDLAVVDVRI---------------- 463
T +F+L G L +S+ L K+GI ++F KN +D R
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 464 ----GVSRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGKDSK----KDRDART 616
S+ + YV F+S +A+ + G+++ ++ + + K + + + RD T
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKAT 197
Query: 617 ---LLAKNLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLE 775
+ KN + D+LKE+F + ++++ GKSKG ++ ++T A+K +
Sbjct: 198 FTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVL 257
Query: 776 EKQGTEIDGRSISLYYTGEKGQN--------QDFRGGKNSTWSGESKTLVLSNLAYSATE 931
+ G IDG+ + + +K + + R + S G + + NL + +
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETIDD 315
Query: 932 ETLQEVFEKATFIKVPQN--QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
E L+E F I + + G+ KG+ I F+SFE+A +A++ N R + + +++ L
Sbjct: 316 EKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTL 375
Score = 56.6 bits (135), Expect = 7e-08
Identities = 77/288 (26%), Positives = 114/288 (39%), Gaps = 18/288 (6%)
Frame = +2
Query: 575 PKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRL--VSKDGKSK---GIAYIE 739
P GK K + A L +L VT+D L + F A +R + +D ++ G Y+
Sbjct: 8 PAGKKKKYLKAA--LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
Query: 740 FKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAY 919
F+ ADAE L I+G+ L ++ D R K+ + + + NL
Sbjct: 66 FRFPADAEWALNTMNFDLINGKPFRLMWS-----QPDDRLRKSGIGN-----IFIKNLDK 115
Query: 920 SATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 1090
S L +F I KV + NG SKGYA++ F S A A+ N + R
Sbjct: 116 SIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 1091 IRLELQGPRGSPNARSQPSKT--------LFVKGLSXXXXXXXLKESFD--GSIRARIVT 1240
+ + G P R+ +T +FVK LKE F G + V
Sbjct: 175 VYV---GRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVI 231
Query: 1241 DRETGSSKGFGFVDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
+G SKGFGFV + + IDG + + A+ K E
Sbjct: 232 RDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>ref|XP_002686981.1| PREDICTED: RNA binding motif protein 28 isoform 1 [Bos taurus].
Length = 751
Score = 69.3 bits (168), Expect = 1e-11
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 22/185 (11%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDAVEIR---LVSKDGKS--KGIAYIEFKTEADAEKTLEE 778
TL LP ++L+E+F ++ +V++ G +G Y+ F D ++ L+E
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKE 64
Query: 779 KQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTL--------------VLSNLA 916
T +G I++ +K +N+ GK K L ++ NL+
Sbjct: 65 I--TTFEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKARLIIRNLS 122
Query: 917 YSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 1087
+ +E+ L+ VF + I +P+ +GK +G+AF++F + +A +AL N +EI+GR
Sbjct: 123 FKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKGR 182
Query: 1088 AIRLE 1102
+ ++
Sbjct: 183 TVAVD 187
Score = 67.0 bits (162), Expect = 5e-11
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 29/207 (14%)
Frame = +2
Query: 359 LFVGNLNFSKSASELKTGISDVF-AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL-EL 532
LFVG L S + +L+ S V K V + R FGYV F ED+++AL E+
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKEI 65
Query: 533 TGLKVFGNEIKLEKPKGKDSKK-----------------------DRDARTLLAKNLPYK 643
T + + + K K ++ K D+ AR L+ +NL +K
Sbjct: 66 TTFEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKAR-LIIRNLSFK 124
Query: 644 VTQDELKEVFED---AVEIRLVSK-DGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSI 811
++D+LK VF +E+ + K DGK +G A+++FK +A K L+ EI GR++
Sbjct: 125 CSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKGRTV 184
Query: 812 SLYYTGEKGQNQDFRGGKNSTWSGESK 892
++ + K + ++ ++++ GE K
Sbjct: 185 AVDWAVAKDK---YKSTQSASIPGEEK 208
>ref|XP_583691.3| PREDICTED: RNA binding motif protein 28 isoform 2 [Bos taurus].
Length = 751
Score = 69.3 bits (168), Expect = 1e-11
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 22/185 (11%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDAVEIR---LVSKDGKS--KGIAYIEFKTEADAEKTLEE 778
TL LP ++L+E+F ++ +V++ G +G Y+ F D ++ L+E
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKE 64
Query: 779 KQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTL--------------VLSNLA 916
T +G I++ +K +N+ GK K L ++ NL+
Sbjct: 65 I--TTFEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKARLIIRNLS 122
Query: 917 YSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 1087
+ +E+ L+ VF + I +P+ +GK +G+AF++F + +A +AL N +EI+GR
Sbjct: 123 FKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKGR 182
Query: 1088 AIRLE 1102
+ ++
Sbjct: 183 TVAVD 187
Score = 67.0 bits (162), Expect = 5e-11
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 29/207 (14%)
Frame = +2
Query: 359 LFVGNLNFSKSASELKTGISDVF-AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL-EL 532
LFVG L S + +L+ S V K V + R FGYV F ED+++AL E+
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKEI 65
Query: 533 TGLKVFGNEIKLEKPKGKDSKK-----------------------DRDARTLLAKNLPYK 643
T + + + K K ++ K D+ AR L+ +NL +K
Sbjct: 66 TTFEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKAR-LIIRNLSFK 124
Query: 644 VTQDELKEVFED---AVEIRLVSK-DGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSI 811
++D+LK VF +E+ + K DGK +G A+++FK +A K L+ EI GR++
Sbjct: 125 CSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKGRTV 184
Query: 812 SLYYTGEKGQNQDFRGGKNSTWSGESK 892
++ + K + ++ ++++ GE K
Sbjct: 185 AVDWAVAKDK---YKSTQSASIPGEEK 208
>ref|NP_001193433.1| RNA-binding protein 39 [Bos taurus].
Length = 530
Score = 64.3 bits (155), Expect = 4e-10
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 9/187 (4%)
Frame = +2
Query: 566 LEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVS-----KDGKSKGIA 730
+ +P + ++RDART+ L ++ +L+E F ++R V +SKGIA
Sbjct: 144 VREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIA 203
Query: 731 YIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSN 910
Y+EF + + G + G I + + + S L + +
Sbjct: 204 YVEFVDVSSVPLAIG-LTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGS 262
Query: 911 LAYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNKREI 1078
L ++ TE+ L+ +FE I+ Q ++ G+SKGY FI F+ E AK+AL N E+
Sbjct: 263 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 322
Query: 1079 EGRAIRL 1099
GR +++
Sbjct: 323 AGRPMKV 329
Score = 56.2 bits (134), Expect = 1e-07
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 15/137 (10%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDART----------L 619
S+ YV+F + A+ LTG +V G I ++ + + ++ A L
Sbjct: 199 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRL 258
Query: 620 LAKNLPYKVTQDELKEVFE-----DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQ 784
+L + +T+D L+ +FE +++++ + S+ G+SKG +I F A+K LE+
Sbjct: 259 YVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN 318
Query: 785 GTEIDGRSISLYYTGEK 835
G E+ GR + + + E+
Sbjct: 319 GFELAGRPMKVGHVTER 335
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,527,497
Number of extensions: 1243897
Number of successful extensions: 3584
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 3413
Number of HSP's successfully gapped: 72
Length of query: 628
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 520
Effective length of database: 14,107,870
Effective search space: 7336092400
Effective search space used: 7336092400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013447
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013447
(1884 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861643.1| PREDICTED: similar to nucleolin-related protein... 641 0.0
Alignment gi|XP_861613.1| PREDICTED: similar to nucleolin-related protein... 641 0.0
Alignment gi|XP_850477.1| PREDICTED: similar to nucleolin-related protein... 641 0.0
Alignment gi|XP_861582.1| PREDICTED: similar to nucleolin-related protein... 606 e-173
Alignment gi|XP_861553.1| PREDICTED: similar to nucleolin-related protein... 570 e-162
Alignment gi|XP_857894.1| PREDICTED: similar to poly(A) binding protein, ... 99 1e-20
Alignment gi|XP_857859.1| PREDICTED: similar to poly(A) binding protein, ... 99 1e-20
Alignment gi|XP_857821.1| PREDICTED: similar to poly(A) binding protein, ... 99 1e-20
Alignment gi|XP_857781.1| PREDICTED: similar to Polyadenylate-binding pro... 99 1e-20
Alignment gi|XP_857739.1| PREDICTED: similar to poly(A) binding protein, ... 99 1e-20
>ref|XP_861643.1| PREDICTED: similar to nucleolin-related protein isoform 5 [Canis
familiaris].
Length = 682
Score = 641 bits (1653), Expect = 0.0
Identities = 332/379 (87%), Positives = 337/379 (88%)
Frame = +2
Query: 248 PVKEAPGKRXXXXXXXXXXXXXXXXXXXXTEPTTSFNLFVGNLNFSKSASELKTGISDVF 427
PVKEAPGKR TEPTTSFNLFVGNLNFSKSA ELKTGISD+F
Sbjct: 261 PVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLF 320
Query: 428 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 607
AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD
Sbjct: 321 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 380
Query: 608 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 787
ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKT EEKQG
Sbjct: 381 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 440
Query: 788 TEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATF 967
TEIDGRSISLYYTGEKGQ+QD+RGGKNSTWSGESKTLVLSNL+YSATEETLQEVFEKATF
Sbjct: 441 TEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 500
Query: 968 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 1147
IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS
Sbjct: 501 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 560
Query: 1148 KTLFVKGLSXXXXXXXLKESFDGSIRARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXX 1327
KTLFVKGLS LKESFDGS+RARIVTDRETGSSKGFGFVDFNS
Sbjct: 561 KTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 620
Query: 1328 XGEIDGNKVTLDWAKPKGE 1384
GEIDGNKVTLDWAKPKGE
Sbjct: 621 DGEIDGNKVTLDWAKPKGE 639
>ref|XP_861613.1| PREDICTED: similar to nucleolin-related protein isoform 4 [Canis
familiaris].
Length = 678
Score = 641 bits (1653), Expect = 0.0
Identities = 332/379 (87%), Positives = 337/379 (88%)
Frame = +2
Query: 248 PVKEAPGKRXXXXXXXXXXXXXXXXXXXXTEPTTSFNLFVGNLNFSKSASELKTGISDVF 427
PVKEAPGKR TEPTTSFNLFVGNLNFSKSA ELKTGISD+F
Sbjct: 261 PVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLF 320
Query: 428 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 607
AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD
Sbjct: 321 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 380
Query: 608 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 787
ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKT EEKQG
Sbjct: 381 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 440
Query: 788 TEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATF 967
TEIDGRSISLYYTGEKGQ+QD+RGGKNSTWSGESKTLVLSNL+YSATEETLQEVFEKATF
Sbjct: 441 TEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 500
Query: 968 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 1147
IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS
Sbjct: 501 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 560
Query: 1148 KTLFVKGLSXXXXXXXLKESFDGSIRARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXX 1327
KTLFVKGLS LKESFDGS+RARIVTDRETGSSKGFGFVDFNS
Sbjct: 561 KTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 620
Query: 1328 XGEIDGNKVTLDWAKPKGE 1384
GEIDGNKVTLDWAKPKGE
Sbjct: 621 DGEIDGNKVTLDWAKPKGE 639
>ref|XP_850477.1| PREDICTED: similar to nucleolin-related protein isoform 1 [Canis
familiaris].
Length = 699
Score = 641 bits (1653), Expect = 0.0
Identities = 332/379 (87%), Positives = 337/379 (88%)
Frame = +2
Query: 248 PVKEAPGKRXXXXXXXXXXXXXXXXXXXXTEPTTSFNLFVGNLNFSKSASELKTGISDVF 427
PVKEAPGKR TEPTTSFNLFVGNLNFSKSA ELKTGISD+F
Sbjct: 261 PVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLF 320
Query: 428 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 607
AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD
Sbjct: 321 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 380
Query: 608 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 787
ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKT EEKQG
Sbjct: 381 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 440
Query: 788 TEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATF 967
TEIDGRSISLYYTGEKGQ+QD+RGGKNSTWSGESKTLVLSNL+YSATEETLQEVFEKATF
Sbjct: 441 TEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 500
Query: 968 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 1147
IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS
Sbjct: 501 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 560
Query: 1148 KTLFVKGLSXXXXXXXLKESFDGSIRARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXX 1327
KTLFVKGLS LKESFDGS+RARIVTDRETGSSKGFGFVDFNS
Sbjct: 561 KTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 620
Query: 1328 XGEIDGNKVTLDWAKPKGE 1384
GEIDGNKVTLDWAKPKGE
Sbjct: 621 DGEIDGNKVTLDWAKPKGE 639
>ref|XP_861582.1| PREDICTED: similar to nucleolin-related protein isoform 3 [Canis
familiaris].
Length = 632
Score = 606 bits (1562), Expect = e-173
Identities = 313/347 (90%), Positives = 318/347 (91%)
Frame = +2
Query: 248 PVKEAPGKRXXXXXXXXXXXXXXXXXXXXTEPTTSFNLFVGNLNFSKSASELKTGISDVF 427
PVKEAPGKR TEPTTSFNLFVGNLNFSKSA ELKTGISD+F
Sbjct: 261 PVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLF 320
Query: 428 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 607
AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD
Sbjct: 321 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 380
Query: 608 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 787
ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKT EEKQG
Sbjct: 381 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 440
Query: 788 TEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATF 967
TEIDGRSISLYYTGEKGQ+QD+RGGKNSTWSGESKTLVLSNL+YSATEETLQEVFEKATF
Sbjct: 441 TEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 500
Query: 968 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 1147
IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS
Sbjct: 501 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 560
Query: 1148 KTLFVKGLSXXXXXXXLKESFDGSIRARIVTDRETGSSKGFGFVDFN 1288
KTLFVKGLS LKESFDGS+RARIVTDRETGSSKGFGFVDFN
Sbjct: 561 KTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFN 607
Score = 107 bits (267), Expect = 4e-23
Identities = 92/315 (29%), Positives = 144/315 (45%), Gaps = 20/315 (6%)
Frame = +2
Query: 497 ESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDART----LLAKNLPYKVTQDELK 664
E E+ E E G + + P+ K K + T L NL + + ELK
Sbjct: 254 EEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELK 313
Query: 665 EVFED--------AVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLY 820
D V++R+ G S+ Y++F++ D EK LE G ++ G I L
Sbjct: 314 TGISDLFAKNDLAVVDVRI----GVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL- 367
Query: 821 YTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKS 1000
EK + GK+S +++TL+ NL Y T++ L+EVFE A I++ +++GKS
Sbjct: 368 ---EKPK------GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV-SKDGKS 417
Query: 1001 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP--------NARSQPSKTL 1156
KG A+IEF + DA++ EI+GR+I L G +G + S SKTL
Sbjct: 418 KGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTL 477
Query: 1157 FVKGLSXXXXXXXLKESFDGSIRARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXXXGE 1336
+ LS L+E F+ + + V + G SKG+ F++F S E
Sbjct: 478 VLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKRE 536
Query: 1337 IDGNKVTLDWAKPKG 1381
I+G + L+ P+G
Sbjct: 537 IEGRAIRLELQGPRG 551
Score = 63.9 bits (154), Expect = 5e-10
Identities = 71/302 (23%), Positives = 127/302 (42%), Gaps = 4/302 (1%)
Frame = +2
Query: 491 DFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEV 670
D + + E+A+E T K +K K K + +D D ++E E
Sbjct: 186 DEDEDDSEEEAMETTPAKGKKAPVKAVPVKAKSTAEDED--------------EEEDDED 231
Query: 671 FEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQD 850
ED E D E + E + E+ EE+ E G+ +K +
Sbjct: 232 EEDDDEEEEDEDDD--------EEEDEEEEEEEEEEEPVKEAPGKR-KKEMAKQKAAPEA 282
Query: 851 FRGGKNSTWSGESKTLVLSNLAYSATEETLQ----EVFEKATFIKVPQNQNGKSKGYAFI 1018
+ +T S L + NL +S + L+ ++F K + V + G S+ + ++
Sbjct: 283 KKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLFAKND-LAVVDVRIGVSRKFGYV 341
Query: 1019 EFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSXXXXXXXL 1198
+F S ED ++AL + + G I+LE P+G + + + ++TL K L L
Sbjct: 342 DFESAEDLEKALELTGLK-VFGNEIKLEK--PKGKDSKKDRDARTLLAKNLPYKVTQDEL 398
Query: 1199 KESFDGSIRARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPK 1378
KE F+ ++ R+V+ + G SKG +++F + EIDG ++L + K
Sbjct: 399 KEVFEDAVEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEK 456
Query: 1379 GE 1384
G+
Sbjct: 457 GQ 458
>ref|XP_861553.1| PREDICTED: similar to nucleolin-related protein isoform 2 [Canis
familiaris].
Length = 632
Score = 570 bits (1468), Expect = e-162
Identities = 296/336 (88%), Positives = 302/336 (89%)
Frame = +2
Query: 248 PVKEAPGKRXXXXXXXXXXXXXXXXXXXXTEPTTSFNLFVGNLNFSKSASELKTGISDVF 427
PVKEAPGKR TEPTTSFNLFVGNLNFSKSA ELKTGISD+F
Sbjct: 261 PVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLF 320
Query: 428 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 607
AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD
Sbjct: 321 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 380
Query: 608 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 787
ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKT EEKQG
Sbjct: 381 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 440
Query: 788 TEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATF 967
TEIDGRSISLYYTGEKGQ+QD+RGGKNSTWSGESKTLVLSNL+YSATEETLQEVFEKATF
Sbjct: 441 TEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 500
Query: 968 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 1147
IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS
Sbjct: 501 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 560
Query: 1148 KTLFVKGLSXXXXXXXLKESFDGSIRARIVTDRETG 1255
KTLFVKGLS LKESFDGS+RARI + G
Sbjct: 561 KTLFVKGLSEDTTEETLKESFDGSVRARIAGEALEG 596
Score = 107 bits (267), Expect = 4e-23
Identities = 92/315 (29%), Positives = 144/315 (45%), Gaps = 20/315 (6%)
Frame = +2
Query: 497 ESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDART----LLAKNLPYKVTQDELK 664
E E+ E E G + + P+ K K + T L NL + + ELK
Sbjct: 254 EEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELK 313
Query: 665 EVFED--------AVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLY 820
D V++R+ G S+ Y++F++ D EK LE G ++ G I L
Sbjct: 314 TGISDLFAKNDLAVVDVRI----GVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL- 367
Query: 821 YTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKS 1000
EK + GK+S +++TL+ NL Y T++ L+EVFE A I++ +++GKS
Sbjct: 368 ---EKPK------GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV-SKDGKS 417
Query: 1001 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP--------NARSQPSKTL 1156
KG A+IEF + DA++ EI+GR+I L G +G + S SKTL
Sbjct: 418 KGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTL 477
Query: 1157 FVKGLSXXXXXXXLKESFDGSIRARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXXXGE 1336
+ LS L+E F+ + + V + G SKG+ F++F S E
Sbjct: 478 VLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKRE 536
Query: 1337 IDGNKVTLDWAKPKG 1381
I+G + L+ P+G
Sbjct: 537 IEGRAIRLELQGPRG 551
Score = 63.9 bits (154), Expect = 5e-10
Identities = 71/302 (23%), Positives = 127/302 (42%), Gaps = 4/302 (1%)
Frame = +2
Query: 491 DFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEV 670
D + + E+A+E T K +K K K + +D D ++E E
Sbjct: 186 DEDEDDSEEEAMETTPAKGKKAPVKAVPVKAKSTAEDED--------------EEEDDED 231
Query: 671 FEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQD 850
ED E D E + E + E+ EE+ E G+ +K +
Sbjct: 232 EEDDDEEEEDEDDD--------EEEDEEEEEEEEEEEPVKEAPGKR-KKEMAKQKAAPEA 282
Query: 851 FRGGKNSTWSGESKTLVLSNLAYSATEETLQ----EVFEKATFIKVPQNQNGKSKGYAFI 1018
+ +T S L + NL +S + L+ ++F K + V + G S+ + ++
Sbjct: 283 KKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLFAKND-LAVVDVRIGVSRKFGYV 341
Query: 1019 EFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSXXXXXXXL 1198
+F S ED ++AL + + G I+LE P+G + + + ++TL K L L
Sbjct: 342 DFESAEDLEKALELTGLK-VFGNEIKLEK--PKGKDSKKDRDARTLLAKNLPYKVTQDEL 398
Query: 1199 KESFDGSIRARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPK 1378
KE F+ ++ R+V+ + G SKG +++F + EIDG ++L + K
Sbjct: 399 KEVFEDAVEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEK 456
Query: 1379 GE 1384
G+
Sbjct: 457 GQ 458
>ref|XP_857894.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform
1 isoform 23 [Canis familiaris].
Length = 634
Score = 99.0 bits (245), Expect = 1e-20
Identities = 86/336 (25%), Positives = 152/336 (45%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N +E+L+E+F K +KV ++ +GKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +EI G+ I R + + R + R L++K L
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L++ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 76.6 bits (187), Expect = 7e-14
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V + LKE+F + ++++ GKSKG ++ ++ DA K +EE G EI
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G+ I + +K + Q + + S + G + L + NL + +E L++ F
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 62.4 bits (150), Expect = 1e-09
Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D +G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + EI G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>ref|XP_857859.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform
1 isoform 22 [Canis familiaris].
Length = 635
Score = 99.0 bits (245), Expect = 1e-20
Identities = 86/336 (25%), Positives = 152/336 (45%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N +E+L+E+F K +KV ++ +GKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +EI G+ I R + + R + R L++K L
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L++ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 76.6 bits (187), Expect = 7e-14
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V + LKE+F + ++++ GKSKG ++ ++ DA K +EE G EI
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G+ I + +K + Q + + S + G + L + NL + +E L++ F
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 62.4 bits (150), Expect = 1e-09
Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D +G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + EI G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>ref|XP_857821.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform
2 isoform 21 [Canis familiaris].
Length = 615
Score = 99.0 bits (245), Expect = 1e-20
Identities = 86/336 (25%), Positives = 152/336 (45%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N +E+L+E+F K +KV ++ +GKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +EI G+ I R + + R + R L++K L
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L++ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 76.6 bits (187), Expect = 7e-14
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V + LKE+F + ++++ GKSKG ++ ++ DA K +EE G EI
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G+ I + +K + Q + + S + G + L + NL + +E L++ F
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 62.4 bits (150), Expect = 1e-09
Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D +G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + EI G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>ref|XP_857781.1| PREDICTED: similar to Polyadenylate-binding protein 4
(Poly(A)-binding protein 4) (PABP 4) (Inducible
poly(A)-binding protein) (iPABP) (Activated-platelet
protein-1) (APP-1) isoform 20 [Canis familiaris].
Length = 619
Score = 99.0 bits (245), Expect = 1e-20
Identities = 86/336 (25%), Positives = 152/336 (45%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N +E+L+E+F K +KV ++ +GKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +EI G+ I R + + R + R L++K L
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L++ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 76.6 bits (187), Expect = 7e-14
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V + LKE+F + ++++ GKSKG ++ ++ DA K +EE G EI
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G+ I + +K + Q + + S + G + L + NL + +E L++ F
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 62.4 bits (150), Expect = 1e-09
Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D +G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + EI G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>ref|XP_857739.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform
2 isoform 19 [Canis familiaris].
Length = 577
Score = 99.0 bits (245), Expect = 1e-20
Identities = 86/336 (25%), Positives = 152/336 (45%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N +E+L+E+F K +KV ++ +GKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +EI G+ I R + + R + R L++K L
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L++ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 76.6 bits (187), Expect = 7e-14
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V + LKE+F + ++++ GKSKG ++ ++ DA K +EE G EI
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G+ I + +K + Q + + S + G + L + NL + +E L++ F
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 62.4 bits (150), Expect = 1e-09
Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D +G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + EI G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,013,832
Number of extensions: 1117455
Number of successful extensions: 5455
Number of sequences better than 1.0e-05: 212
Number of HSP's gapped: 4723
Number of HSP's successfully gapped: 355
Length of query: 628
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 519
Effective length of database: 15,240,880
Effective search space: 7910016720
Effective search space used: 7910016720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013447
(1884 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133770.2| PREDICTED: nucleolin-like [Sus scrofa]. 650 0.0
Alignment gi|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 [... 99 1e-20
Alignment gi|XP_003127859.2| PREDICTED: polyadenylate-binding protein 4-l... 99 1e-20
Alignment gi|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [... 94 3e-19
Alignment gi|XP_001927442.1| PREDICTED: polyadenylate-binding protein 1-l... 89 1e-17
Alignment gi|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-l... 88 1e-17
Alignment gi|XP_003361402.1| PREDICTED: RNA-binding protein 28-like, part... 69 7e-12
Alignment gi|XP_001928191.1| PREDICTED: probable RNA-binding protein 19 [... 68 2e-11
Alignment gi|XP_003362077.1| PREDICTED: probable RNA-binding protein 23 [... 66 8e-11
Alignment gi|XP_003360015.1| PREDICTED: RNA-binding protein 39 [Sus scrof... 64 2e-10
>ref|XP_003133770.2| PREDICTED: nucleolin-like [Sus scrofa].
Length = 724
Score = 650 bits (1677), Expect = 0.0
Identities = 339/379 (89%), Positives = 339/379 (89%)
Frame = +2
Query: 248 PVKEAPGKRXXXXXXXXXXXXXXXXXXXXTEPTTSFNLFVGNLNFSKSASELKTGISDVF 427
PVKEAPGKR TEPTTSFNLFVGNLNFSKSASELKTGISDVF
Sbjct: 285 PVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSASELKTGISDVF 344
Query: 428 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 607
AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD
Sbjct: 345 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 404
Query: 608 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 787
ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG
Sbjct: 405 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 464
Query: 788 TEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATF 967
TEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATF
Sbjct: 465 TEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATF 524
Query: 968 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 1147
IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS
Sbjct: 525 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 584
Query: 1148 KTLFVKGLSXXXXXXXLKESFDGSIRARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXX 1327
KTLFVKGLS LKESFDGSIRARIVTDRETGSSKGFGFVDFNS
Sbjct: 585 KTLFVKGLSEETTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 644
Query: 1328 XGEIDGNKVTLDWAKPKGE 1384
GEIDGNKVTLDWAKPKGE
Sbjct: 645 DGEIDGNKVTLDWAKPKGE 663
>ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 [Sus scrofa].
Length = 644
Score = 98.6 bits (244), Expect = 1e-20
Identities = 86/336 (25%), Positives = 151/336 (44%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N +E L+E+F K +KV ++ +GKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +EI G+ I R + + R + R L++K L
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L++ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 76.6 bits (187), Expect = 4e-14
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V + LKE+F + ++++ GKSKG ++ ++ DA K +EE G EI
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G+ I + +K + Q + + S + G + L + NL + +E L++ F
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 62.4 bits (150), Expect = 8e-10
Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D +G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + EI G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>ref|XP_003127859.2| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa].
Length = 656
Score = 98.6 bits (244), Expect = 1e-20
Identities = 86/336 (25%), Positives = 151/336 (44%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N +E L+E+F K +KV ++ +GKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +EI G+ I R + + R + R L++K L
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L++ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 76.6 bits (187), Expect = 4e-14
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V + LKE+F + ++++ GKSKG ++ ++ DA K +EE G EI
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G+ I + +K + Q + + S + G + L + NL + +E L++ F
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 62.4 bits (150), Expect = 8e-10
Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D +G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + EI G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa].
Length = 636
Score = 94.0 bits (232), Expect = 3e-19
Identities = 74/294 (25%), Positives = 136/294 (46%), Gaps = 23/294 (7%)
Frame = +2
Query: 479 FGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQD 655
+ YV+F+ D E+AL+ V G +++ + S + + KNL +
Sbjct: 54 YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNK 113
Query: 656 ELKEVFE---DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYT 826
L + F + + ++V + SKG ++ F+T+ AE+ +E+ G ++ R + +
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 827 GEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGK 997
+ + + G + + E + + N +E L+++F K A +KV +++GK
Sbjct: 174 KSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 998 SKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPRGSPNARS---------- 1138
SKG+ F+ F EDA++A++ N +E+ G+ I R + + R + R
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 1139 -QPSKTLFVKGLSXXXXXXXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L+VK L L++ F G+I + V E G SKGFGFV F+S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSS 342
Score = 75.9 bits (185), Expect = 7e-14
Identities = 71/270 (26%), Positives = 126/270 (46%), Gaps = 20/270 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-- 529
N+F+ NL+ S L S VV G S+ +G+V FE+ E E+A+E
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 530 ----LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAKNLPYKVTQDELKEVFED---AV 685
L KVF K K + + + ++ + KN + + LK++F A+
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 686 EIRLVSKD-GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGG 862
+++++ + GKSKG ++ F+ DA+K ++E G E++G+ I + +K + Q
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 278
Query: 863 KNSTWSGESKT------LVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAF 1015
K + T L + NL +E L++ F T KV + G+SKG+ F
Sbjct: 279 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGF 337
Query: 1016 IEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
+ F+S E+A +A+ N R + + + + L
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Score = 67.0 bits (162), Expect = 3e-11
Identities = 71/273 (26%), Positives = 120/273 (43%), Gaps = 16/273 (5%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ + + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG----------NIFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPR 1117
I KV ++NG SKGY F+ F + E A+ A+ N + R + R + + R
Sbjct: 121 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1118 GSP-NARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGFVDF 1285
+ AR++ +++K LK+ F ++ +++TD E+G SKGFGFV F
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSF 238
Query: 1286 NSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
E++G ++ + A+ K E
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>ref|XP_001927442.1| PREDICTED: polyadenylate-binding protein 1-like [Sus scrofa].
Length = 610
Score = 88.6 bits (218), Expect = 1e-17
Identities = 81/337 (24%), Positives = 150/337 (44%), Gaps = 25/337 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V DV S + Y++F+ D E+AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
+V G I++ + + + KNL + L + F + + ++V
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
D S+G ++ F+T A+ + G ++ R + + + + + + G + +
Sbjct: 132 CDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGAR----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + NL E LQ++F K +KV ++ +G S+G+ F+ F EDA++A
Sbjct: 188 LEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKA 247
Query: 1052 LNSCNKREIEGRAI-------RLELQGPRGSPNARSQPSK-------TLFVKGLSXXXXX 1189
+ N +E+ GR + R+E Q + + + L+VK L
Sbjct: 248 VTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 1190 XXLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 1291
L++ F G I A+++T E G SKGFGFV F+S
Sbjct: 308 EKLRKEFAPYGMITSAKVMT--EGGHSKGFGFVCFSS 342
Score = 55.8 bits (133), Expect = 8e-08
Identities = 71/275 (25%), Positives = 116/275 (42%), Gaps = 18/275 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AYI F+ ADAE+ L+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIR-VCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ G + G + + NL S + L + F
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDP-------GLRKSGVGN---VFIKNLEDSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV + +G S+G+ F+ F + E A+ A+ + N + R + R E
Sbjct: 121 TFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRRER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKESFD--GSIRARIVTDRETGSSKGFGFV 1279
+ G AR+ ++VK L L++ F G I + V ++G S+GFGFV
Sbjct: 180 EAELG---ARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFV 236
Query: 1280 DFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
+F E+ G + + A+ + E
Sbjct: 237 NFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVE 271
>ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa].
Length = 370
Score = 88.2 bits (217), Expect = 1e-17
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 25/337 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + L S V + + D+ S + YV+F D +KAL+
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEI---RLV 700
+ G I+L + + + KNL + L E F +I +++
Sbjct: 71 MNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI-DGRSISLYYTGEKGQNQDFRGGKNSTW 877
S D S+G A++ F+ + A++ +EE G + D R + K + + + N
Sbjct: 131 SDDQGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKAN--- 187
Query: 878 SGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKE 1048
E + + N +E L+EVF K +KV ++ +GKSKG+ F+ F S E AK+
Sbjct: 188 --EFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKK 245
Query: 1049 ALNSCNKREIEGRAI---RLELQGPRGS-----------PNARSQPSKTLFVKGLSXXXX 1186
A+ N ++I G+ + R + + R + R L++K L
Sbjct: 246 AVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETID 305
Query: 1187 XXXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L+ F GSI +R+ +E G SKGFG + F+S
Sbjct: 306 DEKLRREFSSFGSI-SRVKVMQEEGRSKGFGLICFSS 341
Score = 65.5 bits (158), Expect = 1e-10
Identities = 67/270 (24%), Positives = 122/270 (45%), Gaps = 20/270 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-- 529
N+F+ NL+ S L S F K + V SR + +V F++ ++A+E
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFS-AFGKILSSKVMSDDQGSRGYAFVHFQNQIAADRAIEEM 157
Query: 530 ----LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAKNLPYKVTQDELKEVFED---AV 685
L ++F K K + + K + + KN + + LKEVF +
Sbjct: 158 NGALLKDCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTL 217
Query: 686 EIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQD---- 850
++++ GKSKG ++ F + A+K +EE G +I+G+ + + +K + Q
Sbjct: 218 SVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQ 277
Query: 851 -FRGGKNSTWSG-ESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAF 1015
F K + + L + NL + +E L+ F + +KV Q + G+SKG+
Sbjct: 278 MFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGL 336
Query: 1016 IEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
I F+S E+A +A+ N R + + + + L
Sbjct: 337 ICFSSPEEATKAMTEMNGRILGSKPLNIAL 366
Score = 56.2 bits (134), Expect = 6e-08
Identities = 60/234 (25%), Positives = 95/234 (40%), Gaps = 10/234 (4%)
Frame = +2
Query: 713 KSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESK 892
+S G AY+ F ADA+K L+ I G+SI L ++ + G
Sbjct: 49 RSLGYAYVNFLQLADAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGN--------- 99
Query: 893 TLVLSNLAYSATEETLQE---VFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC 1063
+ + NL S +TL E F K KV + G S+GYAF+ F + A A+
Sbjct: 100 -VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEM 157
Query: 1064 NKREIEGRAIRLELQGPRGSPNARSQPSKT----LFVKGLSXXXXXXXLKESFDG---SI 1222
N ++ + + R A Q +++K LKE F ++
Sbjct: 158 NGALLKDCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTL 217
Query: 1223 RARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
+++ D +G SKGFGFV F+S +I+G + + A+ K E
Sbjct: 218 SVKVMRD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAE 270
>ref|XP_003361402.1| PREDICTED: RNA-binding protein 28-like, partial [Sus scrofa].
Length = 365
Score = 69.3 bits (168), Expect = 7e-12
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 20/157 (12%)
Frame = +2
Query: 692 RLVSKDGKSK---GIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGG 862
RLV + +SK G Y+ F D +K L+E T +GR I++ +K +N+ G
Sbjct: 86 RLVPEYVRSKACRGFGYVTFSMLEDVQKALKEI--TTFEGRKINVIVAKKKLRNKSKEKG 143
Query: 863 KNSTWSGESKT--------------LVLSNLAYSATEETLQEVFEK---ATFIKVPQNQN 991
KN K L++ NL++ +E+ L+ VF + +P+ +
Sbjct: 144 KNENSESPKKQPKPKKAKVADKKARLIIRNLSFKCSEDDLKTVFAPFGAVLEVNIPRKPD 203
Query: 992 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 1102
GK +G+AF++F + +A +AL S N +EI+GR + ++
Sbjct: 204 GKMRGFAFVQFKNLLEAGKALRSMNMKEIKGRTVAVD 240
Score = 63.9 bits (154), Expect = 3e-10
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 28/174 (16%)
Frame = +2
Query: 455 VRIGVSRKFGYVDFESAEDLEKAL-ELT---GLKVF-------------------GNEIK 565
VR R FGYV F ED++KAL E+T G K+ +E
Sbjct: 92 VRSKACRGFGYVTFSMLEDVQKALKEITTFEGRKINVIVAKKKLRNKSKEKGKNENSESP 151
Query: 566 LEKPKGKDSK-KDRDARTLLAKNLPYKVTQDELKEVFED---AVEIRLVSK-DGKSKGIA 730
++PK K +K D+ AR L+ +NL +K ++D+LK VF +E+ + K DGK +G A
Sbjct: 152 KKQPKPKKAKVADKKAR-LIIRNLSFKCSEDDLKTVFAPFGAVLEVNIPRKPDGKMRGFA 210
Query: 731 YIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESK 892
+++FK +A K L EI GR++++ + K + ++ + ++ GE K
Sbjct: 211 FVQFKNLLEAGKALRSMNMKEIKGRTVAVDWAVAKDK---YKNTQPASAPGEEK 261
>ref|XP_001928191.1| PREDICTED: probable RNA-binding protein 19 [Sus scrofa].
Length = 967
Score = 67.8 bits (164), Expect = 2e-11
Identities = 49/213 (23%), Positives = 100/213 (46%), Gaps = 15/213 (7%)
Frame = +2
Query: 509 DLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVE 688
++EK E G +++ E+ + ++ ++ TL KNL + T++ LK VF
Sbjct: 704 EVEKPTE-GGADAASAKVEEEEEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGA 762
Query: 689 IRLVSKDGK--------SKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQN 844
++ S K S G ++E+K A+K L++ QG +DG + + + +
Sbjct: 763 VKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISERATKP 822
Query: 845 QDFRGGKNSTWSGESKTLVL-SNLAYSATEETLQEVFE---KATFIKVPQNQNGKS--KG 1006
K ++ + +L N+ + A ++E+F + +++P+ G +G
Sbjct: 823 APTATRKKQVARKQTTSKILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRG 882
Query: 1007 YAFIEFASFEDAKEALNS-CNKREIEGRAIRLE 1102
+ F++F + +DAK A N+ C+ + GR + LE
Sbjct: 883 FGFVDFFTKQDAKRAFNALCHSTHLYGRRLVLE 915
Score = 58.5 bits (140), Expect = 1e-08
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Frame = +2
Query: 893 TLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSK-------GYAFIEFASFEDAKEA 1051
TL + NL +S TEETL+ VF K +K K+K G+ F+E+ E A++A
Sbjct: 738 TLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKA 797
Query: 1052 LNSCNKREIEGRA--IRLELQGPRGSPNA-------RSQPSKTLFVKGLSXXXXXXXLKE 1204
L ++G +R+ + + +P A R Q + + V+ + ++E
Sbjct: 798 LKQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILVRNIPFQADSREIRE 857
Query: 1205 SFD--GSIRARIVTDRETGSS--KGFGFVD-FNSXXXXXXXXXXXXXGEIDGNKVTLDWA 1369
F G ++ + + TG+ +GFGFVD F + G ++ L+WA
Sbjct: 858 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNALCHSTHLYGRRLVLEWA 917
Score = 58.5 bits (140), Expect = 1e-08
Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 23/189 (12%)
Frame = +2
Query: 359 LFVGNLNFSKSASELKTGISDVFAKNDLAVVDVR----IGVSRKFGYVDFESAEDLEKAL 526
LF+ NLNFS + LK S V A ++ + +S FG+V+++ E +KAL
Sbjct: 739 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 798
Query: 527 -ELTGLKVFGNEIKLE------KPKGKDSKKDRDAR-----TLLAKNLPYKVTQDELKEV 670
+L G V G+++++ KP ++K + AR +L +N+P++ E++E+
Sbjct: 799 KQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILVRNIPFQADSREIREL 858
Query: 671 FEDAVEIRLV------SKDGKSKGIAYIEFKTEADAEKTLEEK-QGTEIDGRSISLYYTG 829
F E++ V + G +G +++F T+ DA++ T + GR + L +
Sbjct: 859 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNALCHSTHLYGRRLVLEWAD 918
Query: 830 EKGQNQDFR 856
+ Q R
Sbjct: 919 SEVTLQALR 927
Score = 49.3 bits (116), Expect = 7e-06
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 22/199 (11%)
Frame = +2
Query: 569 EKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA--VEIRLV-SKDGKSKGIAYIE 739
EKP + ++ T+ + P+ VT+ + E V IR+V + G G +++
Sbjct: 289 EKPAHQ--REPTTPHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYVFVD 346
Query: 740 FKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNST--WSG---------- 883
F +E + +K L+ + + GR I ++ EK KNST W G
Sbjct: 347 FSSEEEVKKALQCNR-EYMGGRYIEVFR--EKSIPTAKAPPKNSTKAWQGRTLGEHEEEE 403
Query: 884 ---ESKTLVLSNLAYSATEETLQEVFEK---ATFIKVP-QNQNGKSKGYAFIEFASFEDA 1042
+S L + NL Y+++EE L+++F K + + P + K KG+AF+ F E A
Sbjct: 404 DLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 463
Query: 1043 KEALNSCNKREIEGRAIRL 1099
+A + + +GR + +
Sbjct: 464 VKAYAEVDGQVFQGRMLHV 482
>ref|XP_003362077.1| PREDICTED: probable RNA-binding protein 23 [Sus scrofa].
Length = 443
Score = 65.9 bits (159), Expect = 8e-11
Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 9/193 (4%)
Frame = +2
Query: 548 FGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLVS--KDG 712
F + + +P S ++RDART+ L ++ +L++ F ++R++S
Sbjct: 147 FREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 206
Query: 713 KSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESK 892
+SKGIAY+EF E + G + G I + + + +G
Sbjct: 207 RSKGIAYVEF-CEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGTGGPM 265
Query: 893 TLVLSNLAYSATEETLQEVFEKA----TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 1060
L + +L ++ TE+ L+ +FE + + + G+SKGY FI F+ E A+ AL
Sbjct: 266 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 325
Query: 1061 CNKREIEGRAIRL 1099
N E+ GR +R+
Sbjct: 326 LNGFELAGRPMRI 338
Score = 49.3 bits (116), Expect = 7e-06
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDART----------L 619
S+ YV+F + + A+ LTG ++ G I ++ + + ++ A L
Sbjct: 208 SKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGTGGPMRL 267
Query: 620 LAKNLPYKVTQDELKEVFE-----DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQ 784
+L + +T+D L+ +FE D + + S G+SKG +I F A + LE+
Sbjct: 268 YVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 327
Query: 785 GTEIDGRSISLYYTGEK 835
G E+ GR + + + E+
Sbjct: 328 GFELAGRPMRIGHVTER 344
>ref|XP_003360015.1| PREDICTED: RNA-binding protein 39 [Sus scrofa].
Length = 502
Score = 64.3 bits (155), Expect = 2e-10
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 9/187 (4%)
Frame = +2
Query: 566 LEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVS-----KDGKSKGIA 730
+ +P + ++RDART+ L ++ +L+E F ++R V +SKGIA
Sbjct: 116 VREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIA 175
Query: 731 YIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSN 910
Y+EF + + G + G I + + + S L + +
Sbjct: 176 YVEFVDVSSVPLAIG-LTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGS 234
Query: 911 LAYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNKREI 1078
L ++ TE+ L+ +FE I+ Q ++ G+SKGY FI F+ E AK+AL N E+
Sbjct: 235 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 294
Query: 1079 EGRAIRL 1099
GR +++
Sbjct: 295 AGRPMKV 301
Score = 56.2 bits (134), Expect = 6e-08
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 15/137 (10%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDART----------L 619
S+ YV+F + A+ LTG +V G I ++ + + ++ A L
Sbjct: 171 SKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRL 230
Query: 620 LAKNLPYKVTQDELKEVFE-----DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQ 784
+L + +T+D L+ +FE +++++ + S+ G+SKG +I F A+K LE+
Sbjct: 231 YVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN 290
Query: 785 GTEIDGRSISLYYTGEK 835
G E+ GR + + + E+
Sbjct: 291 GFELAGRPMKVGHVTER 307
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,332,170
Number of extensions: 1052081
Number of successful extensions: 2394
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 2241
Number of HSP's successfully gapped: 76
Length of query: 628
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 523
Effective length of database: 8,729,747
Effective search space: 4565657681
Effective search space used: 4565657681
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013447
(1884 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035010.3| nucleolin [Mus musculus]. 549 e-156
Alignment gi|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus ... 101 2e-21
Alignment gi|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus ... 96 7e-20
Alignment gi|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus ... 96 7e-20
Alignment gi|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]. 95 2e-19
Alignment gi|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musc... 93 8e-19
Alignment gi|NP_001107551.1| polyadenylate-binding protein 1-like [Mus mu... 89 2e-17
Alignment gi|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like ... 83 7e-16
Alignment gi|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]. 77 4e-14
Alignment gi|NP_598686.2| RNA-binding protein 28 [Mus musculus]. 74 4e-13
>ref|NP_035010.3| nucleolin [Mus musculus].
Length = 707
Score = 549 bits (1415), Expect = e-156
Identities = 289/379 (76%), Positives = 312/379 (82%)
Frame = +2
Query: 248 PVKEAPGKRXXXXXXXXXXXXXXXXXXXXTEPTTSFNLFVGNLNFSKSASELKTGISDVF 427
PVK APGKR +EPTT FNLF+GNLN +KS +ELK IS++F
Sbjct: 274 PVKAAPGKRKKEMTKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELF 333
Query: 428 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 607
AKNDLAVVDVR G +RKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG+DSKK R
Sbjct: 334 AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRA 393
Query: 608 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 787
ARTLLAKNL + +T+DELKEVFEDA+EIRLVS+DGKSKGIAYIEFK+EADAEK LEEKQG
Sbjct: 394 ARTLLAKNLSFNITEDELKEVFEDAMEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 453
Query: 788 TEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATF 967
EIDGRS+SLYYTGEKGQ Q+ R GK STWSGESKTLVLSNL+YSAT+ETL+EVFEKATF
Sbjct: 454 AEIDGRSVSLYYTGEKGQRQE-RTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKATF 512
Query: 968 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 1147
IKVPQN +GK KGYAFIEFASFEDAKEALNSCNK EIEGR IRLELQG N+RSQPS
Sbjct: 513 IKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQG----SNSRSQPS 568
Query: 1148 KTLFVKGLSXXXXXXXLKESFDGSIRARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXX 1327
KTLFVKGLS LKESF+GS+RARIVTDRETGSSKGFGFVDFNS
Sbjct: 569 KTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 628
Query: 1328 XGEIDGNKVTLDWAKPKGE 1384
GEIDGNKVTLDWAKPKGE
Sbjct: 629 DGEIDGNKVTLDWAKPKGE 647
>ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus].
Length = 643
Score = 101 bits (251), Expect = 2e-21
Identities = 94/355 (26%), Positives = 163/355 (45%), Gaps = 36/355 (10%)
Frame = +2
Query: 335 TEPTTSF-NLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKFGY--VDFESA 505
++P+ S +L+VG+L+ + + L S + V RI R GY V+F+
Sbjct: 4 SDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRI-TRRSLGYASVNFQQL 62
Query: 506 EDLEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE-- 676
ED E+AL+ V G +++ + S + + KNL + L + F
Sbjct: 63 EDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAF 122
Query: 677 -DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDF 853
+ + ++V + SKG ++ F+T+ +AE+ +E+ G ++ + + G +D
Sbjct: 123 GNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKV---FVGRFKSRRD- 178
Query: 854 RGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEF 1024
R + + E + + NL +E LQ++F + A +KV +++GKSKG+ F+ F
Sbjct: 179 RQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSF 238
Query: 1025 ASFEDAKEALNSCNKREIEGRAI-----------RLELQGPRGS-----------PNARS 1138
EDA++A+ N +++ G+ I + EL+ G P RS
Sbjct: 239 ERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRS 298
Query: 1139 QPSK--TLFVKGLSXXXXXXXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
K L+VK L L++ F G+I + VT E G SKGFGFV F+S
Sbjct: 299 VRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVT-MEGGRSKGFGFVCFSS 352
Score = 71.6 bits (174), Expect = 2e-12
Identities = 69/280 (24%), Positives = 130/280 (46%), Gaps = 30/280 (10%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-- 529
N+FV NL+ S + L S VV G S+ +G+V FE+ E+ E+A+E
Sbjct: 100 NIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKM 158
Query: 530 ----LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAKNLPYKVTQDELKEVFE---DAV 685
L KVF K + + + + ++ + KNL + + L+++F A+
Sbjct: 159 NGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPAL 218
Query: 686 EIRLVSKD-GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDF--- 853
+++++ + GKSKG ++ F+ DA K +EE G +++G+ I + +K + Q
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKH 278
Query: 854 -------------RGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQN 985
R ++ + + L + NL +E L++ F T KV
Sbjct: 279 KFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTM- 337
Query: 986 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
+ G+SKG+ F+ F+S E+A +A+ N + + + + + L
Sbjct: 338 EGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVAL 377
>ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus].
Length = 660
Score = 96.3 bits (238), Expect = 7e-20
Identities = 85/336 (25%), Positives = 150/336 (44%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N + L+E+F K +KV ++ +GKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +E+ G+AI R + + R + R L++K L
Sbjct: 248 VEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L+ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRREFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 75.5 bits (184), Expect = 1e-13
Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V LKE+F + ++++ GKSKG ++ ++ DA K +EE G E+
Sbjct: 197 NFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G++I + +K + Q + + S + G + L + NL + +E L+ F
Sbjct: 257 SGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRREF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 60.8 bits (146), Expect = 3e-09
Identities = 70/276 (25%), Positives = 116/276 (42%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
+ G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D +G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + E+ G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVE 271
>ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus].
Length = 615
Score = 96.3 bits (238), Expect = 7e-20
Identities = 85/336 (25%), Positives = 150/336 (44%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N + L+E+F K +KV ++ +GKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +E+ G+AI R + + R + R L++K L
Sbjct: 248 VEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L+ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRREFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 75.5 bits (184), Expect = 1e-13
Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V LKE+F + ++++ GKSKG ++ ++ DA K +EE G E+
Sbjct: 197 NFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G++I + +K + Q + + S + G + L + NL + +E L+ F
Sbjct: 257 SGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRREF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 60.8 bits (146), Expect = 3e-09
Identities = 70/276 (25%), Positives = 116/276 (42%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
+ G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D +G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + E+ G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVE 271
>ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus].
Length = 636
Score = 95.1 bits (235), Expect = 2e-19
Identities = 75/294 (25%), Positives = 136/294 (46%), Gaps = 23/294 (7%)
Frame = +2
Query: 479 FGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQD 655
+ YV+F+ D E+AL+ V G +++ + S + + KNL +
Sbjct: 54 YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNK 113
Query: 656 ELKEVFE---DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYT 826
L + F + + ++V + SKG ++ F+T+ AE+ +E+ G ++ R + +
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 827 GEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGK 997
+ + + G + + E + + N +E L+E+F K A +KV +++GK
Sbjct: 174 KSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK 229
Query: 998 SKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPRGSPNARS---------- 1138
SKG+ F+ F EDA++A++ N +E+ G+ I R + + R + R
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 1139 -QPSKTLFVKGLSXXXXXXXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L+VK L L++ F G+I + V E G SKGFGFV F+S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSS 342
Score = 77.0 bits (188), Expect = 5e-14
Identities = 72/270 (26%), Positives = 126/270 (46%), Gaps = 20/270 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-- 529
N+F+ NL+ S L S VV G S+ +G+V FE+ E E+A+E
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 530 ----LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAKNLPYKVTQDELKEVFED---AV 685
L KVF K K + + + ++ + KN + + LKE+F A+
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 686 EIRLVSKD-GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGG 862
+++++ + GKSKG ++ F+ DA+K ++E G E++G+ I + +K + Q
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 278
Query: 863 KNSTWSGESKT------LVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAF 1015
K + T L + NL +E L++ F T KV + G+SKG+ F
Sbjct: 279 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGF 337
Query: 1016 IEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
+ F+S E+A +A+ N R + + + + L
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Score = 68.2 bits (165), Expect = 2e-11
Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 16/273 (5%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ + + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG----------NIFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPR 1117
I KV ++NG SKGY F+ F + E A+ A+ N + R + R + + R
Sbjct: 121 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1118 GSP-NARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGFVDF 1285
+ AR++ +++K LKE F ++ +++TD E+G SKGFGFV F
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSF 238
Query: 1286 NSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
E++G ++ + A+ K E
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus].
Length = 628
Score = 92.8 bits (229), Expect = 8e-19
Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 25/298 (8%)
Frame = +2
Query: 473 RKFGY--VDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYK 643
R GY V+FE D E+AL+ V G +++ + S + + KNL
Sbjct: 50 RSLGYASVNFEQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKT 109
Query: 644 VTQDELKEVFE---DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSIS 814
+ L + F + + ++VS + SKG ++ F+TE AE+ +E+ G ++ R +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKV- 168
Query: 815 LYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQN 985
+ G + ++Q R + T + E + + N +ETL +F + +KV +
Sbjct: 169 --FVG-RFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD 225
Query: 986 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPRGSPNARSQPSKT- 1153
+ GKSKG+ F+ F EDA++A++ N +E+ G+ I R + + R + T
Sbjct: 226 EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQ 285
Query: 1154 ----------LFVKGLSXXXXXXXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L+VK L L++ F G+I + V E G SKGFGFV F+S
Sbjct: 286 DKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVM-TEGGRSKGFGFVCFSS 342
Score = 72.8 bits (177), Expect = 9e-13
Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 22/272 (8%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-- 529
N+F+ NLN + L S VV G S+ G+V FE+ E E+A+E
Sbjct: 100 NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKM 158
Query: 530 ----LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIR 694
L KVF K +K + + ++ + KN ++ + L +F +I
Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQIL 218
Query: 695 LVS----KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISL--------YYTGEKG 838
V + GKSKG ++ F+ DA+K ++E G E++G+ I + +T K
Sbjct: 219 SVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKH 278
Query: 839 QNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGY 1009
+ + K+ + G + L + NL +E LQ+ F T KV + G+SKG+
Sbjct: 279 KFEQVTQDKSIRYQGIN--LYVKNLDDGIDDERLQKEFSPFGTITSTKV-MTEGGRSKGF 335
Query: 1010 AFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
F+ F+S E+A +A++ N R + + + + L
Sbjct: 336 GFVCFSSPEEATKAVSEMNGRIVATKPLYVAL 367
>ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus].
Length = 607
Score = 88.6 bits (218), Expect = 2e-17
Identities = 82/337 (24%), Positives = 153/337 (45%), Gaps = 25/337 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + S L S + + V DV S + Y++F+ D E+AL+
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEI---RLV 700
+V G I++ + + KNL + L + F I ++V
Sbjct: 72 MNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ S+G ++ F+T A+K + G ++ R + + + + + + G + ++
Sbjct: 132 YNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFT 191
Query: 881 GESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
+ + NL + E+ LQ++F + +KV ++ NG+S+G+ F+ F E+A++A
Sbjct: 192 N----IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNAR-----------SQPSKTLFVKGLSXXXXX 1189
++ N +E+ G+ + R + + R S R L+VK L
Sbjct: 248 VDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSIND 307
Query: 1190 XXLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 1291
LKE F G I A+++T E+ SKGFGFV F+S
Sbjct: 308 ERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSS 342
Score = 65.1 bits (157), Expect = 2e-10
Identities = 69/273 (25%), Positives = 119/273 (43%), Gaps = 16/273 (5%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFE---DAVEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E+F + + IR V +D +S G AYI F+ ADAE+ L+
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIR-VCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTG-EKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
I G+ I + ++ + G + G + + NL S + L + F
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGN-----------IFIKNLENSIDNKALYDTF 119
Query: 953 EKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL----ELQG 1111
I KV N++G S+G+ F+ F + E A++A+N+ N + R + + Q
Sbjct: 120 STFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQK 178
Query: 1112 PRGSPNARSQPSKTLFVKGLSXXXXXXXLKESFD--GSIRARIVTDRETGSSKGFGFVDF 1285
AR+ ++VK L L++ F G++++ V G S+GFGFV+F
Sbjct: 179 REAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNF 238
Query: 1286 NSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
E+ G + + A+ + E
Sbjct: 239 EKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAE 271
>ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus].
Length = 370
Score = 83.2 bits (204), Expect = 7e-16
Identities = 86/336 (25%), Positives = 141/336 (41%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + L S V + + D+ S + YV+F D +KAL
Sbjct: 11 SLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKALVT 70
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFED--AVEIRLVS 703
V G I+L + + + KNL + L E F + V
Sbjct: 71 MNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIMSSKVM 130
Query: 704 KDGK-SKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
DG+ SKG ++ ++ A++ +EE G + R +L+ K + R +
Sbjct: 131 TDGEGSKGYGFVHYQDRRAADRAIEEMNGKLL--RESTLFVARFKSRKD--REAELRDKP 186
Query: 881 GESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N +E L+EVF K +KV ++ GKSKG+ F+ F S E AK A
Sbjct: 187 TEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNA 246
Query: 1052 LNSCNKREIEGRAIRL--------------ELQGPRGSPNARSQPSKTLFVKGLSXXXXX 1189
+ N ++I G+ I + E+ R++ + L++K L
Sbjct: 247 VEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDD 306
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L++ F GSI R+ +E G SKGFG + F S
Sbjct: 307 ETLRKEFSVFGSI-CRVKVMQEAGQSKGFGLICFFS 341
Score = 55.8 bits (133), Expect = 1e-07
Identities = 70/274 (25%), Positives = 112/274 (40%), Gaps = 15/274 (5%)
Frame = +2
Query: 608 ARTLLAKNLPYKVTQDELKEVFEDA---VEIRLVSK--DGKSKGIAYIEFKTEADAEKTL 772
A +L +L VT+D L F + IR+ +S G AY+ F DA+K L
Sbjct: 9 AASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKAL 68
Query: 773 EEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
I G+SI L ++ + R G + + + NL S +TL E F
Sbjct: 69 VTMNFDVIKGKSIRLMWSQRDACLR--RSGVGNVF--------IKNLDKSIDNKTLYEHF 118
Query: 953 EKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 1123
I KV + G SKGY F+ + A A+ N + + + + R
Sbjct: 119 SPFGTIMSSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKD 177
Query: 1124 PNA--RSQPSK--TLFVKGLSXXXXXXXLKESFDG---SIRARIVTDRETGSSKGFGFVD 1282
A R +P++ +++K L+E F ++ +++ D TG SKGFGFV
Sbjct: 178 REAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDA-TGKSKGFGFVS 236
Query: 1283 FNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
F+S +I+G + + A+ K E
Sbjct: 237 FDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVE 270
>ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus].
Length = 381
Score = 77.4 bits (189), Expect = 4e-14
Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 24/295 (8%)
Frame = +2
Query: 479 FGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQD 655
+GYV+F D E AL + G +L + D + + KNL +
Sbjct: 60 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNR 119
Query: 656 ELKEVFE---DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYT 826
L +F + + ++V D SKG AY+ F + A A + + G ++ R + Y
Sbjct: 120 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV---YV 176
Query: 827 GEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGK 997
G ++ + + + N +E L ++F + +KV ++ GK
Sbjct: 177 GRFKFPEERAAEVRTRERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGK 236
Query: 998 SKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------------RLELQGPRGSPNARS 1138
SKG+ F+ + + E A++A+ + + I+G+ + L + R ++
Sbjct: 237 SKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKN 296
Query: 1139 QPSKT-LFVKGLSXXXXXXXLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 1291
+PS +++K L LKE F GSI RA+++ E G KGFG V F+S
Sbjct: 297 RPSGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSS 349
Score = 58.2 bits (139), Expect = 2e-08
Identities = 68/298 (22%), Positives = 133/298 (44%), Gaps = 44/298 (14%)
Frame = +2
Query: 344 TTSFNLFVGN---LNFSKSASEL-KTGISDVFAKNDLAVVDVRI---------------- 463
T +F+L G L +S+ L K+G+ ++F KN +D R
Sbjct: 77 TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKV 136
Query: 464 ----GVSRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGKDSK----KDRDART 616
S+ + YV F+S +A+ + G+++ ++ + + K + + + R+ T
Sbjct: 137 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERAT 196
Query: 617 ---LLAKNLPYKVTQDELKEVFED--AVEIRLVSKD--GKSKGIAYIEFKTEADAEKTLE 775
+ KN + ++L ++F + E V +D GKSKG ++ ++T A+K +
Sbjct: 197 FTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVL 256
Query: 776 EKQGTEIDGRSISLYYTGEKGQN-----QDFRGGKNSTWSGESKT-LVLSNLAYSATEET 937
E G IDG+ + + +K + + F K + S + + NL + +E
Sbjct: 257 ELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEK 316
Query: 938 LQEVFEKATFIKVPQ--NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
L+E F I + + G+ KG+ + F+SFE+A +A++ N R I + + + L
Sbjct: 317 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLHVTL 374
Score = 53.9 bits (128), Expect = 4e-07
Identities = 73/286 (25%), Positives = 108/286 (37%), Gaps = 15/286 (5%)
Frame = +2
Query: 572 KPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRL--VSKDGKSK---GIAYI 736
+P KK L +L VT+D L + F A +R + +D ++ G Y+
Sbjct: 4 EPNTAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYV 63
Query: 737 EFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLA 916
F+ ADAE L I+G+ L ++ + + G N KT+ L
Sbjct: 64 NFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRK-SGVGNIFIKNLDKTIDNRALF 122
Query: 917 YSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 1096
Y L F KV + NG SKGYA++ F S A A+ N + R +
Sbjct: 123 Y------LFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVY 175
Query: 1097 LELQGPRGSPNARSQPSKT--------LFVKGLSXXXXXXXLKESFD--GSIRARIVTDR 1246
+ G P R+ +T +FVK L + F G + V
Sbjct: 176 V---GRFKFPEERAAEVRTRERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRD 232
Query: 1247 ETGSSKGFGFVDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
TG SKGFGFV + + IDG + + A+ K E
Sbjct: 233 ATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIE 278
>ref|NP_598686.2| RNA-binding protein 28 [Mus musculus].
Length = 750
Score = 73.9 bits (180), Expect = 4e-13
Identities = 94/368 (25%), Positives = 163/368 (44%), Gaps = 59/368 (16%)
Frame = +2
Query: 359 LFVGNLNFSKSASELKTGISDVF-AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL-EL 532
LFVG L S + +L+ S V K V + R FGYV F ED+++AL E+
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 533 TGLKVFGNEIKLEKPK----GKDSKKDRDART------------------LLAKNLPYKV 646
T + ++ + K K K+++K+ +A + L+ +NL +K
Sbjct: 66 TTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKC 125
Query: 647 TQDELKEVFED---AVEIRLVSK-DGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSIS 814
++D+LK VF +E+ + K DGK +G A+++FK +A K L+ EI GR+++
Sbjct: 126 SEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVA 185
Query: 815 LYYTGEKGQNQDFR-----GGKNST-----WSGESKTLVLSNLAYSATEE---TLQEVFE 955
+ + K + +D + G K S+ SG+ V + S EE + + E
Sbjct: 186 VDWAVAKDKYKDAQHASAPGVKKSSDRKPKESGKKNCRVEEQVEDSDDEEDDDSHDDEEE 245
Query: 956 KATFIKVPQNQNGKSKGYAFIEFA-----SFEDA--KEALNSCNKREIEGRAIRLELQG- 1111
+ + I P + + ++ A E + S+ED+ +E +S ++ ++ + + +
Sbjct: 246 RESTIASPVSVHKRAVKRAAPEESIEEDDSYEDSDLEEGGSSYDEGTVDSESSAEDQEDE 305
Query: 1112 --PRGSPNARSQPS-----KTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSS 1261
P R PS KT+F++ LS L E F R+V +T S
Sbjct: 306 DVPVSEKKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHS 365
Query: 1262 KGFGFVDF 1285
KG F F
Sbjct: 366 KGCAFAQF 373
Score = 68.9 bits (167), Expect = 1e-11
Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 22/185 (11%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDAVEIR---LVSKDGKS--KGIAYIEFKTEADAEKTLEE 778
TL LP D+L+E+F ++ +V++ G +G Y+ F D ++ L+E
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 779 KQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKT--------------LVLSNLA 916
T +G I + +K +N+ KN K L++ NL+
Sbjct: 65 I--TTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLS 122
Query: 917 YSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 1087
+ +E+ L+ VF + +P+ +GK +G+AF++F + +A +AL N +EI+GR
Sbjct: 123 FKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGR 182
Query: 1088 AIRLE 1102
+ ++
Sbjct: 183 TVAVD 187
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,282,857
Number of extensions: 942927
Number of successful extensions: 3523
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 3301
Number of HSP's successfully gapped: 84
Length of query: 628
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 521
Effective length of database: 12,403,707
Effective search space: 6462331347
Effective search space used: 6462331347
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013447
(1884 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005372.2| nucleolin [Homo sapiens]. 636 0.0
Alignment gi|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [H... 100 5e-21
Alignment gi|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo... 100 5e-21
Alignment gi|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [H... 100 5e-21
Alignment gi|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]. 96 1e-19
Alignment gi|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]. 94 4e-19
Alignment gi|NP_001108206.2| polyadenylate-binding protein 4-like [Homo s... 94 6e-19
Alignment gi|NP_001118228.1| polyadenylate-binding protein 1-like [Homo s... 81 3e-15
Alignment gi|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]. 78 2e-14
Alignment gi|NP_060547.2| RNA-binding protein 28 isoform 1 [Homo sapiens]. 71 4e-12
>ref|NP_005372.2| nucleolin [Homo sapiens].
Length = 710
Score = 636 bits (1641), Expect = 0.0
Identities = 328/379 (86%), Positives = 336/379 (88%)
Frame = +2
Query: 248 PVKEAPGKRXXXXXXXXXXXXXXXXXXXXTEPTTSFNLFVGNLNFSKSASELKTGISDVF 427
PVKEAPGKR TEPTT+FNLFVGNLNF+KSA ELKTGISDVF
Sbjct: 272 PVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVF 331
Query: 428 AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRD 607
AKNDLAVVDVRIG++RKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKK+RD
Sbjct: 332 AKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKERD 391
Query: 608 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 787
ARTLLAKNLPYKVTQDELKEVFEDA EIRLVSKDGKSKGIAYIEFKTEADAEKT EEKQG
Sbjct: 392 ARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 451
Query: 788 TEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATF 967
TEIDGRSISLYYTGEKGQNQD+RGGKNSTWSGESKTLVLSNL+YSATEETLQEVFEKATF
Sbjct: 452 TEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 511
Query: 968 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 1147
IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS
Sbjct: 512 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 571
Query: 1148 KTLFVKGLSXXXXXXXLKESFDGSIRARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXX 1327
KTLFVKGLS LKESFDGS+RARIVTDRETGSSKGFGFVDFNS
Sbjct: 572 KTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 631
Query: 1328 XGEIDGNKVTLDWAKPKGE 1384
GEIDGNKVTLDWAKPKGE
Sbjct: 632 DGEIDGNKVTLDWAKPKGE 650
>ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens].
Length = 631
Score = 100 bits (249), Expect = 5e-21
Identities = 87/336 (25%), Positives = 152/336 (45%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N +E+L+E+F K +KV ++ NGKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +EI G+ I R + + R + R L++K L
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L++ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 77.0 bits (188), Expect = 6e-14
Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V + LKE+F + ++++ +GKSKG ++ ++ DA K +EE G EI
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G+ I + +K + Q + + S + G + L + NL + +E L++ F
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 61.6 bits (148), Expect = 2e-09
Identities = 72/276 (26%), Positives = 115/276 (41%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + EI G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
>ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens].
Length = 644
Score = 100 bits (249), Expect = 5e-21
Identities = 87/336 (25%), Positives = 152/336 (45%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N +E+L+E+F K +KV ++ NGKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +EI G+ I R + + R + R L++K L
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L++ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 77.0 bits (188), Expect = 6e-14
Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V + LKE+F + ++++ +GKSKG ++ ++ DA K +EE G EI
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G+ I + +K + Q + + S + G + L + NL + +E L++ F
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 61.6 bits (148), Expect = 2e-09
Identities = 72/276 (26%), Positives = 115/276 (41%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + EI G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
>ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens].
Length = 660
Score = 100 bits (249), Expect = 5e-21
Identities = 87/336 (25%), Positives = 152/336 (45%), Gaps = 24/336 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V D+ S + YV+F+ D E+AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
V G I++ + S + + KNL + L + F + + ++V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ SKG A++ F+T+ A+K +E+ G ++ R + + + + + G K +
Sbjct: 132 CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + N +E+L+E+F K +KV ++ NGKSKG+ F+ + EDA +A
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKA 247
Query: 1052 LNSCNKREIEGRAI---RLELQGPRGSPNARS-----------QPSKTLFVKGLSXXXXX 1189
+ N +EI G+ I R + + R + R L++K L
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 1190 XXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L++ F GSI + V E G SKGFGFV F+S
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSS 342
Score = 77.0 bits (188), Expect = 6e-14
Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 22/234 (9%)
Frame = +2
Query: 470 SRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAK 628
S+ + +V FE+ E +KA+E L KVF K K + + K ++ + K
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 629 NLPYKVTQDELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 796
N +V + LKE+F + ++++ +GKSKG ++ ++ DA K +EE G EI
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 797 DGRSISLYYTGEKGQNQ--------DFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF 952
G+ I + +K + Q + + S + G + L + NL + +E L++ F
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEF 314
Query: 953 E---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
T KV ++G+SKG+ F+ F+S E+A +A+ N R + + + + L
Sbjct: 315 SPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367
Score = 61.6 bits (148), Expect = 2e-09
Identities = 72/276 (26%), Positives = 115/276 (41%), Gaps = 19/276 (6%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ I + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI-------RLEL 1105
I KV ++NG SKGYAF+ F + E A +A+ N + R + R E
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1106 QGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGF 1276
+ G A+++ +++K LKE F ++ +++ D G SKGFGF
Sbjct: 180 EAELG---AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGF 235
Query: 1277 VDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
V + EI G + + A+ K E
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
>ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens].
Length = 631
Score = 95.9 bits (237), Expect = 1e-19
Identities = 85/341 (24%), Positives = 156/341 (45%), Gaps = 24/341 (7%)
Frame = +2
Query: 341 PTTSFNLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLE 517
PT S L+VG+L+ + + L S + + D+ S + YV+F+ +D E
Sbjct: 9 PTAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAE 66
Query: 518 KALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEV---FEDAV 685
AL+ V G +++ + S + + KNL + L + F + +
Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNIL 126
Query: 686 EIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGK 865
+V + SKG ++ F+T AE+ +++ G ++GR + + + + + G +
Sbjct: 127 SCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 866 NSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFE 1036
+ E + + N +E L+++F K A +KV +++GKSKG+ F+ F E
Sbjct: 187 ----AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 1037 DAKEALNSCNKREIEGRAI---RLELQGPRGSPNARSQPSK-----------TLFVKGLS 1174
DA++A++ N +E+ G+ I R + + R + R+ L+VK L
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLD 302
Query: 1175 XXXXXXXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L+++F G+I + V E G SKGFGFV F+S
Sbjct: 303 DGIDDERLRKAFSPFGTITSAKVM-MEGGRSKGFGFVCFSS 342
Score = 77.8 bits (190), Expect = 3e-14
Identities = 72/270 (26%), Positives = 131/270 (48%), Gaps = 20/270 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-- 529
N+FV NL+ S + L +S VV G S+ +G+V FE+ E E+A++
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 530 ----LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAKNLPYKVTQDELKEVFED---AV 685
L G KVF + K K + + + ++ + KN + + LK++F A+
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 686 EIRLVSKD-GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQD---- 850
+++++ + GKSKG ++ F+ DA+K ++E G E++G+ I + +K + Q
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 278
Query: 851 -FRGGKNSTWSG-ESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAF 1015
F K + + L + NL +E L++ F T KV + G+SKG+ F
Sbjct: 279 TFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGF 337
Query: 1016 IEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
+ F+S E+A +A+ N R + + + + L
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
>ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens].
Length = 636
Score = 94.0 bits (232), Expect = 4e-19
Identities = 74/294 (25%), Positives = 136/294 (46%), Gaps = 23/294 (7%)
Frame = +2
Query: 479 FGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQD 655
+ YV+F+ D E+AL+ V G +++ + S + + KNL +
Sbjct: 54 YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNK 113
Query: 656 ELKEVFE---DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYT 826
L + F + + ++V + SKG ++ F+T+ AE+ +E+ G ++ R + +
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 827 GEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGK 997
+ + + G + + E + + N +E L+++F K A +KV +++GK
Sbjct: 174 KSRKEREAELGAR----AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 998 SKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPRGSPNARS---------- 1138
SKG+ F+ F EDA++A++ N +E+ G+ I R + + R + R
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289
Query: 1139 -QPSKTLFVKGLSXXXXXXXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L+VK L L++ F G+I + V E G SKGFGFV F+S
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSS 342
Score = 75.9 bits (185), Expect = 1e-13
Identities = 71/270 (26%), Positives = 126/270 (46%), Gaps = 20/270 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-- 529
N+F+ NL+ S L S VV G S+ +G+V FE+ E E+A+E
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 530 ----LTGLKVFGNEIKLEKPKGKD-SKKDRDARTLLAKNLPYKVTQDELKEVFED---AV 685
L KVF K K + + + ++ + KN + + LK++F A+
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 686 EIRLVSKD-GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGG 862
+++++ + GKSKG ++ F+ DA+K ++E G E++G+ I + +K + Q
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 278
Query: 863 KNSTWSGESKT------LVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAF 1015
K + T L + NL +E L++ F T KV + G+SKG+ F
Sbjct: 279 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGF 337
Query: 1016 IEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
+ F+S E+A +A+ N R + + + + L
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Score = 67.0 bits (162), Expect = 6e-11
Identities = 71/273 (26%), Positives = 120/273 (43%), Gaps = 16/273 (5%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDA---VEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 775
+L +L VT+ L E F A + IR V +D +S G AY+ F+ ADAE+ L+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIR-VCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 776 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 955
I G+ + + ++ + G + + NL S + L + F
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG----------NIFIKNLDKSIDNKALYDTFS 120
Query: 956 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPR 1117
I KV ++NG SKGY F+ F + E A+ A+ N + R + R + + R
Sbjct: 121 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 1118 GSP-NARSQPSKTLFVKGLSXXXXXXXLKE---SFDGSIRARIVTDRETGSSKGFGFVDF 1285
+ AR++ +++K LK+ F ++ +++TD E+G SKGFGFV F
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSF 238
Query: 1286 NSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
E++G ++ + A+ K E
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens].
Length = 428
Score = 93.6 bits (231), Expect = 6e-19
Identities = 90/338 (26%), Positives = 154/338 (45%), Gaps = 26/338 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRK---FGYVDFESAEDLEKAL 526
+L+VG+L+ + L S V L++ R V+R+ + YV+F D +KAL
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPV--LSIRICRDQVTRRSLGYAYVNFLQLADAQKAL 126
Query: 527 ELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEI---R 694
+ + G I+L + + + KNL + L E F +I +
Sbjct: 127 DTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSK 186
Query: 695 LVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNST 874
++S D SKG A++ F+ ++ A++ +EE G + G + + G + +N+ R + +
Sbjct: 187 VMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV---FVG-RFKNRKDREAELRS 242
Query: 875 WSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAK 1045
+ E + + N +E L++VF K +KV + +GKSKG+ F+ F S E AK
Sbjct: 243 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAK 302
Query: 1046 EALNSCNKREIEGRAI-------RLELQGPRGS-------PNARSQPSKTLFVKGLSXXX 1183
+A+ N R+I G+ I ++E Q R L++K L
Sbjct: 303 KAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTI 362
Query: 1184 XXXXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 1291
L+ F GSI +R+ +E G SKGFG + F+S
Sbjct: 363 DDEKLRNEFSSFGSI-SRVKVMQEEGQSKGFGLICFSS 399
Score = 70.9 bits (172), Expect = 4e-12
Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 21/271 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-- 529
N+F+ NL+ S L S F K + V S+ + +V F++ ++A+E
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFS-AFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 530 ----LTGLKVFGNEIKLEKPKGKDSK-KDRDARTLLAKNLPYKVTQDELKEVFED----- 679
L G KVF K K + + + K + + KN + + LK+VF
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 275
Query: 680 AVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQD--- 850
+V++ + GKSKG ++ F + A+K +EE G +I+G+ I + +K + Q
Sbjct: 276 SVKV-MTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 334
Query: 851 --FRGGKNSTWSG-ESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYA 1012
F K G + L + NL + +E L+ F + +KV Q + G+SKG+
Sbjct: 335 QMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFG 393
Query: 1013 FIEFASFEDAKEALNSCNKREIEGRAIRLEL 1105
I F+S EDA +A+ N R + + + + L
Sbjct: 394 LICFSSPEDATKAMTEMNGRILGSKPLSIAL 424
Score = 67.0 bits (162), Expect = 6e-11
Identities = 78/287 (27%), Positives = 125/287 (43%), Gaps = 19/287 (6%)
Frame = +2
Query: 581 GKDSKKDRDARTLLAK----NLPYKVTQDELKEVFEDA---VEIRLVSKD--GKSKGIAY 733
GKD + + A+ +A +L VT+D L F + IR+ +S G AY
Sbjct: 54 GKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAY 113
Query: 734 IEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNL 913
+ F ADA+K L+ I G+SI L ++ + R G + + + NL
Sbjct: 114 VNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLR--RSGIGNVF--------IKNL 163
Query: 914 AYSATEETLQE---VFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG 1084
S +TL E F K KV + G SKGYAF+ F + A A+ N + ++G
Sbjct: 164 DKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKG 222
Query: 1085 RAIRLELQGPRGSPNA--RSQPSK--TLFVKGLSXXXXXXXLKESFDG---SIRARIVTD 1243
+ + R A RS+ S+ +++K LK+ F ++ +++TD
Sbjct: 223 CKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD 282
Query: 1244 RETGSSKGFGFVDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
+G SKGFGFV F+S +I+G + + A+ K E
Sbjct: 283 -SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 328
>ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens].
Length = 614
Score = 81.3 bits (199), Expect = 3e-15
Identities = 77/337 (22%), Positives = 148/337 (43%), Gaps = 25/337 (7%)
Frame = +2
Query: 356 NLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALEL 532
+L+VG+L+ + + L S + V DV S + Y++F+ D E+AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 533 TGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLV 700
++ G I++ + + + KNL + L + F + + ++
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 701 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 880
+ S+G ++ F+T A++ + G ++ R + + + + + + G + +
Sbjct: 132 CDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR----A 187
Query: 881 GESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 1051
E + + NL E+ LQ++F K +KV ++ +G S+ + F+ F E+A++A
Sbjct: 188 LEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKA 247
Query: 1052 LNSCNKREIEGRAI-------RLELQGP-------RGSPNARSQPSKTLFVKGLSXXXXX 1189
+ N +E+ GR + R+E Q R L+VK L
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDD 307
Query: 1190 XXLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNS 1291
L++ F G I A+++T E G SKGFGFV F+S
Sbjct: 308 DKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSS 342
>ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens].
Length = 382
Score = 78.2 bits (191), Expect = 2e-14
Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 25/296 (8%)
Frame = +2
Query: 479 FGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQD 655
+GYV+F D E AL + G +L + D + + KNL +
Sbjct: 61 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR 120
Query: 656 ELKEVFE---DAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYT 826
L +F + + ++V D SKG AY+ F + A A + + G ++ R + Y
Sbjct: 121 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV---YV 177
Query: 827 GEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGK 997
G ++ + + + N+ +E L+E+F + +KV ++ +GK
Sbjct: 178 GRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK 237
Query: 998 SKGYAFIEFASFEDAKEALNSCNKREIEGRA---------------IRLELQGPRGSPNA 1132
SKG+ F+ + + E A++A+ + + I+G+ +R + R +
Sbjct: 238 SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS 297
Query: 1133 RSQPSKTLFVKGLSXXXXXXXLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNS 1291
R P +++K L LKE F GSI RA+++ E G KGFG V F+S
Sbjct: 298 R-PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSS 350
Score = 60.5 bits (145), Expect = 5e-09
Identities = 70/302 (23%), Positives = 134/302 (44%), Gaps = 48/302 (15%)
Frame = +2
Query: 344 TTSFNLFVGN---LNFSKSASEL-KTGISDVFAKNDLAVVDVRI---------------- 463
T +F+L G L +S+ L K+G+ ++F KN +D R
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 464 ----GVSRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGKDSK----KDRDART 616
S+ + YV F+S +A+ + G+++ ++ + + K + + + RD T
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 617 ---LLAKNLPYKVTQDELKEVF------EDAVEIRLVSKDGKSKGIAYIEFKTEADAEKT 769
+ KN+ + ++LKE+F E IR S GKSKG ++ ++T A+K
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS--GKSKGFGFVRYETHEAAQKA 255
Query: 770 LEEKQGTEIDGRSISLYYTGEKGQN--------QDFRGGKNSTWSGESKTLVLSNLAYSA 925
+ + G IDG+ + + +K + + R + S G + + NL +
Sbjct: 256 VLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETI 313
Query: 926 TEETLQEVFEKATFIKVPQ--NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 1099
+E L+E F I + + G+ KG+ + F+SFE+A +A++ N R + + + +
Sbjct: 314 NDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
Query: 1100 EL 1105
L
Sbjct: 374 TL 375
Score = 55.8 bits (133), Expect = 1e-07
Identities = 77/288 (26%), Positives = 115/288 (39%), Gaps = 18/288 (6%)
Frame = +2
Query: 575 PKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRL--VSKDGKSK---GIAYIE 739
P GK K + A L +L VT+D L + F A +R + +D ++ G Y+
Sbjct: 8 PAGKKKKYLKAA--LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
Query: 740 FKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAY 919
F+ ADAE L I+G+ L ++ D R K+ + + + NL
Sbjct: 66 FRFPADAEWALNTMNFDLINGKPFRLMWS-----QPDDRLRKSGVGN-----IFIKNLDK 115
Query: 920 SATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 1090
S L +F I KV + NG SKGYA++ F S A A+ N + R
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 1091 IRLELQGPRGSPNARSQPSKT--------LFVKGLSXXXXXXXLKESFD--GSIRARIVT 1240
+ + G P R+ +T +FVK + LKE F G + V
Sbjct: 175 VYV---GRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVI 231
Query: 1241 DRETGSSKGFGFVDFNSXXXXXXXXXXXXXGEIDGNKVTLDWAKPKGE 1384
+G SKGFGFV + + IDG + + A+ K E
Sbjct: 232 RDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>ref|NP_060547.2| RNA-binding protein 28 isoform 1 [Homo sapiens].
Length = 759
Score = 70.9 bits (172), Expect = 4e-12
Identities = 94/380 (24%), Positives = 162/380 (42%), Gaps = 71/380 (18%)
Frame = +2
Query: 359 LFVGNLNFSKSASELKTGISDVF-AKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL-EL 532
LFVG L S + +L+ S V K V + R FGYV F ED+++AL E+
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 533 T---GLKVF-------------------GNEIKLEKPKGKDSK-KDRDARTLLAKNLPYK 643
T G K+ +E ++PK K +K D+ AR L+ +NL +K
Sbjct: 66 TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKAR-LIIRNLSFK 124
Query: 644 VTQDELKEVFED---AVEIRLVSK-DGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSI 811
++D+LK VF +E+ + K DGK +G +++FK +A K L+ EI GR++
Sbjct: 125 CSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTV 184
Query: 812 SLYYTGEKGQNQDFR-----GGKNSTWSGESKTLVLSNLAYSATEETLQ----------- 943
++ + K + +D + G + S S +++ EE
Sbjct: 185 AVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEENDDDDDDDDEED 244
Query: 944 ---------------------EVFEKATFIKVPQNQNGKSKGYAFIEFA-SFEDAKE-AL 1054
++ ++A P + S+ + +E + S +D +E A
Sbjct: 245 GVFDDEDEEEENIESKVTKPVQIQKRAVKRPAPAKSSDHSEEDSDLEESDSIDDGEELAQ 304
Query: 1055 NSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSXXXXXXXLKESFD--GSIR- 1225
+ + E E +A+++ + R P+ ++ KT+F++ LS L E G ++
Sbjct: 305 SDTSTEEQEDKAVQVSNKKKRKLPSDVNE-GKTVFIRNLSFDSEEEELGELLQQFGELKY 363
Query: 1226 ARIVTDRETGSSKGFGFVDF 1285
RIV +T SKG F F
Sbjct: 364 VRIVLHPDTEHSKGCAFAQF 383
Score = 68.9 bits (167), Expect = 1e-11
Identities = 46/185 (24%), Positives = 93/185 (50%), Gaps = 22/185 (11%)
Frame = +2
Query: 614 TLLAKNLPYKVTQDELKEVFEDAVEIR---LVSKDGKS--KGIAYIEFKTEADAEKTLEE 778
TL LP ++L+E+F ++ +V++ G +G Y+ F D ++ L+E
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 779 KQGTEIDGRSISLYY--------TGEKGQNQDFRGGKNSTWSGESKT------LVLSNLA 916
T +G I++ T EKG+N++ K + ++K L++ NL+
Sbjct: 65 I--TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLS 122
Query: 917 YSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 1087
+ +E+ L+ VF + + +P+ +GK +G+ F++F + +A +AL N +EI+GR
Sbjct: 123 FKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGR 182
Query: 1088 AIRLE 1102
+ ++
Sbjct: 183 TVAVD 187
Score = 50.1 bits (118), Expect = 7e-06
Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 28/190 (14%)
Frame = +2
Query: 893 TLVLSNLAYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNS 1060
TL + L SA E L+E+F + +K V + + +G+ ++ F+ ED + AL
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 1061 C------------------NKREIEGRAIRLELQGPRGSPNAR----SQPSKTLFVKGLS 1174
NK + +G+ E P+ P A+ + L ++ LS
Sbjct: 65 ITTFEGCKINVTVAKKKLRNKTKEKGKNENSEC--PKKEPKAKKAKVADKKARLIIRNLS 122
Query: 1175 XXXXXXXLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSXXXXXXXXXXXXXGEIDGN 1348
LK F G++ + + G +GFGFV F + EI G
Sbjct: 123 FKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGR 182
Query: 1349 KVTLDWAKPK 1378
V +DWA K
Sbjct: 183 TVAVDWAVAK 192
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,072,983
Number of extensions: 1094686
Number of successful extensions: 4001
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 3741
Number of HSP's successfully gapped: 96
Length of query: 628
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 519
Effective length of database: 14,704,088
Effective search space: 7631421672
Effective search space used: 7631421672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013447
(1884 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895502.2| Sus scrofa unplaced genomic scaffold ChrUScaf3386 609 e-171
Sscrofa_Chr15 609 e-171
Sscrofa_Chr03 168 7e-39
>gb|GL895502.2| Sus scrofa unplaced genomic scaffold ChrUScaf3386
Length = 81399
Score = 609 bits (307), Expect = e-171
Identities = 316/319 (99%)
Strand = Plus / Minus
Query: 1533 accacaagccacaaggaaagaagaccaagtttgaatagtttcttctatccctgtcgttcc 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17971 accacaagccacaaggaaagaagaccaagtttgaatagtttcttctatccctgtcgttcc 17912
Query: 1593 tcttccatttgaaagaaaggactctggggtttttactctgttacctgatcactggcagag 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17911 tcttccatttgaaagaaaggactctggggtttttactctgttacctgatcactggcagag 17852
Query: 1653 ccttctgaggacattccaagacagcgtgcagccctgtggtctccttgggaatcgtataga 1712
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 17851 ccttctgaggacattccaagacagcgtgcagccctgtggtctccttggaaatcgtataga 17792
Query: 1713 taacatttcaaaggcgataaccctgttggttttgactggatattgatataaactttttaa 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17791 taacatttcaaaggcgataaccctgttggttttgactggatattgatataaactttttaa 17732
Query: 1773 agagatgagtgatagagctaacccttatctgtaagttttgaatttatattgtttcttccc 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17731 agagatgagtgatagagctaacccttatctgtaagttttgaatttatattgtttcttccc 17672
Query: 1833 atgtaaaaaaccttttttt 1851
||||| |||||| ||||||
Sbjct: 17671 atgtacaaaaccatttttt 17653
Score = 448 bits (226), Expect = e-123
Identities = 226/226 (100%)
Strand = Plus / Minus
Query: 1266 ggtttggttttgtggacttcaacagtgaggaagatgccaaagccgccaaggaggccatgg 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18414 ggtttggttttgtggacttcaacagtgaggaagatgccaaagccgccaaggaggccatgg 18355
Query: 1326 aagatggtgaaattgatggaaacaaagttactttggactgggccaagcctaagggcgaag 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18354 aagatggtgaaattgatggaaacaaagttactttggactgggccaagcctaagggcgaag 18295
Query: 1386 gtggcttcggtggccgaggaggaggcaggggcggctttggaggtcgaggtggtggcagag 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18294 gtggcttcggtggccgaggaggaggcaggggcggctttggaggtcgaggtggtggcagag 18235
Query: 1446 gtggccgcggtggatttggtggcagaggccggggaggctttggagg 1491
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18234 gtggccgcggtggatttggtggcagaggccggggaggctttggagg 18189
Score = 319 bits (161), Expect = 3e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 723 ggattgcttatatagaatttaagacagaagctgatgcagagaaaaccttggaagaaaagc 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20550 ggattgcttatatagaatttaagacagaagctgatgcagagaaaaccttggaagaaaagc 20491
Query: 783 agggaacagaaatagatgggcgatccatttccctgtactacactggagagaaaggtcaaa 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20490 agggaacagaaatagatgggcgatccatttccctgtactacactggagagaaaggtcaaa 20431
Query: 843 atcaagactttagaggtggaaagaatagcacttggagtggt 883
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 20430 atcaagactttagaggtggaaagaatagcacttggagtggt 20390
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 331 agccacagaaccaactacgtctttcaatctctttgttggaaacctgaacttcagcaaatc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23905 agccacagaaccaactacgtctttcaatctctttgttggaaacctgaacttcagcaaatc 23846
Query: 391 tgcttctgaattaaaaacgggtatcagtgacgtttttgctaaaaatgatcttgctgttgt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23845 tgcttctgaattaaaaacgggtatcagtgacgtttttgctaaaaatgatcttgctgttgt 23786
Query: 451 cgacgtcagaattggtgtgtctagg 475
|||||||||||||||||||||||||
Sbjct: 23785 cgacgtcagaattggtgtgtctagg 23761
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 1005 ggtatgcatttatagaatttgcttcgtttgaagatgctaaagaagctttaaattcatgta 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19581 ggtatgcatttatagaatttgcttcgtttgaagatgctaaagaagctttaaattcatgta 19522
Query: 1065 ataaaagggaaattgagggcagagccatcagactggagttgcaaggacccaggggatcac 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19521 ataaaagggaaattgagggcagagccatcagactggagttgcaaggacccaggggatcac 19462
Query: 1125 ctaacgcaagaagcc 1139
|||||||||||||||
Sbjct: 19461 ctaacgcaagaagcc 19447
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 1140 agccatccaaaactctgtttgtgaaaggtctgtccgaggaaaccacagaagagacattaa 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18908 agccatccaaaactctgtttgtgaaaggtctgtccgaggaaaccacagaagagacattaa 18849
Query: 1200 aggagtcgtttgacggctctattcgtgcaaggatcgtcactgaccgggagactgggtcct 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18848 aggagtcgtttgacggctctattcgtgcaaggatcgtcactgaccgggagactgggtcct 18789
Query: 1260 ccaaggggt 1268
|||||||||
Sbjct: 18788 ccaaggggt 18780
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 881 ggtgaatcaaaaactctggttctaagcaacctcgcctatagtgccacagaagaaaccctt 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19887 ggtgaatcaaaaactctggttctaagcaacctcgcctatagtgccacagaagaaaccctt 19828
Query: 941 caggaagtatttgagaaggcaacgtttatcaaagtgccccagaaccaaaacggcaaatct 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19827 caggaagtatttgagaaggcaacgtttatcaaagtgccccagaaccaaaacggcaaatct 19768
Query: 1001 aaagggta 1008
||||||||
Sbjct: 19767 aaagggta 19760
Score = 252 bits (127), Expect = 6e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 598 agatcgagatgcgaggacgcttttggctaaaaatctgccttataaagttactcaggatga 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21423 agatcgagatgcgaggacgcttttggctaaaaatctgccttataaagttactcaggatga 21364
Query: 658 attaaaagaagtctttgaagatgccgtggagatcagattagtcagcaaggatggaaagag 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21363 attaaaagaagtctttgaagatgccgtggagatcagattagtcagcaaggatggaaagag 21304
Query: 718 taaaggg 724
|||||||
Sbjct: 21303 taaaggg 21297
Score = 252 bits (127), Expect = 6e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 473 aggaagtttggctatgtggattttgaatctgctgaagacctggaaaaagccttggaactc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22773 aggaagtttggctatgtggattttgaatctgctgaagacctggaaaaagccttggaactc 22714
Query: 533 actggtttaaaagtctttggcaatgaaattaaactagaaaaaccaaagggaaaagacagt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22713 actggtttaaaagtctttggcaatgaaattaaactagaaaaaccaaagggaaaagacagt 22654
Query: 593 aagaaag 599
|||||||
Sbjct: 22653 aagaaag 22647
Score = 168 bits (85), Expect = 7e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 248 cctgtcaaagaagcacctggaaaacgaaagaaggagatggccaaacagaaagcagctcct 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24177 cctgtcaaagaagcacctggaaaacgaaagaaggagatggccaaacagaaagcagctcct 24118
Query: 308 gaagccaagaaacagaaggtggaag 332
|||||||||||||||||||||||||
Sbjct: 24117 gaagccaagaaacagaaggtggaag 24093
Score = 117 bits (59), Expect = 2e-23
Identities = 73/75 (97%), Gaps = 2/75 (2%)
Strand = Plus / Minus
Query: 34 gctatggagacggt-ccagccaa-gggaaaaaagccccggcaaaagctgttcctgtgaag 91
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 24502 gctatggagacggtaccagccaaagggaaaaaagccccggcaaaagctgttcctgtgaag 24443
Query: 92 gccaagagcactgct 106
|||||||||||||||
Sbjct: 24442 gccaagagcactgct 24428
>Sscrofa_Chr15
|| Length = 157681621
Score = 609 bits (307), Expect = e-171
Identities = 316/319 (99%)
Strand = Plus / Plus
Query: 1533 accacaagccacaaggaaagaagaccaagtttgaatagtttcttctatccctgtcgttcc 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145944829 accacaagccacaaggaaagaagaccaagtttgaatagtttcttctatccctgtcgttcc 145944888
Query: 1593 tcttccatttgaaagaaaggactctggggtttttactctgttacctgatcactggcagag 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145944889 tcttccatttgaaagaaaggactctggggtttttactctgttacctgatcactggcagag 145944948
Query: 1653 ccttctgaggacattccaagacagcgtgcagccctgtggtctccttgggaatcgtataga 1712
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 145944949 ccttctgaggacattccaagacagcgtgcagccctgtggtctccttggaaatcgtataga 145945008
Query: 1713 taacatttcaaaggcgataaccctgttggttttgactggatattgatataaactttttaa 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145945009 taacatttcaaaggcgataaccctgttggttttgactggatattgatataaactttttaa 145945068
Query: 1773 agagatgagtgatagagctaacccttatctgtaagttttgaatttatattgtttcttccc 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145945069 agagatgagtgatagagctaacccttatctgtaagttttgaatttatattgtttcttccc 145945128
Query: 1833 atgtaaaaaaccttttttt 1851
||||| |||||| ||||||
Sbjct: 145945129 atgtacaaaaccatttttt 145945147
Score = 448 bits (226), Expect = e-123
Identities = 226/226 (100%)
Strand = Plus / Plus
Query: 1266 ggtttggttttgtggacttcaacagtgaggaagatgccaaagccgccaaggaggccatgg 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145944386 ggtttggttttgtggacttcaacagtgaggaagatgccaaagccgccaaggaggccatgg 145944445
Query: 1326 aagatggtgaaattgatggaaacaaagttactttggactgggccaagcctaagggcgaag 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145944446 aagatggtgaaattgatggaaacaaagttactttggactgggccaagcctaagggcgaag 145944505
Query: 1386 gtggcttcggtggccgaggaggaggcaggggcggctttggaggtcgaggtggtggcagag 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145944506 gtggcttcggtggccgaggaggaggcaggggcggctttggaggtcgaggtggtggcagag 145944565
Query: 1446 gtggccgcggtggatttggtggcagaggccggggaggctttggagg 1491
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145944566 gtggccgcggtggatttggtggcagaggccggggaggctttggagg 145944611
Score = 319 bits (161), Expect = 3e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 723 ggattgcttatatagaatttaagacagaagctgatgcagagaaaaccttggaagaaaagc 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145942238 ggattgcttatatagaatttaagacagaagctgatgcagagaaaaccttggaagaaaagc 145942297
Query: 783 agggaacagaaatagatgggcgatccatttccctgtactacactggagagaaaggtcaaa 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145942298 agggaacagaaatagatgggcgatccatttccctgtactacactggagagaaaggtcaaa 145942357
Query: 843 atcaagactttagaggtggaaagaatagcacttggagtggt 883
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 145942358 atcaagactttagaggtggaaagaatagcacttggagtggt 145942398
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1005 ggtatgcatttatagaatttgcttcgtttgaagatgctaaagaagctttaaattcatgta 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145943207 ggtatgcatttatagaatttgcttcgtttgaagatgctaaagaagctttaaattcatgta 145943266
Query: 1065 ataaaagggaaattgagggcagagccatcagactggagttgcaaggacccaggggatcac 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145943267 ataaaagggaaattgagggcagagccatcagactggagttgcaaggacccaggggatcac 145943326
Query: 1125 ctaacgcaagaagcc 1139
|||||||||||||||
Sbjct: 145943327 ctaacgcaagaagcc 145943341
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1140 agccatccaaaactctgtttgtgaaaggtctgtccgaggaaaccacagaagagacattaa 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145943892 agccatccaaaactctgtttgtgaaaggtctgtccgaggaaaccacagaagagacattaa 145943951
Query: 1200 aggagtcgtttgacggctctattcgtgcaaggatcgtcactgaccgggagactgggtcct 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145943952 aggagtcgtttgacggctctattcgtgcaaggatcgtcactgaccgggagactgggtcct 145944011
Query: 1260 ccaaggggt 1268
|||||||||
Sbjct: 145944012 ccaaggggt 145944020
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 881 ggtgaatcaaaaactctggttctaagcaacctcgcctatagtgccacagaagaaaccctt 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145942901 ggtgaatcaaaaactctggttctaagcaacctcgcctatagtgccacagaagaaaccctt 145942960
Query: 941 caggaagtatttgagaaggcaacgtttatcaaagtgccccagaaccaaaacggcaaatct 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145942961 caggaagtatttgagaaggcaacgtttatcaaagtgccccagaaccaaaacggcaaatct 145943020
Query: 1001 aaagggta 1008
||||||||
Sbjct: 145943021 aaagggta 145943028
Score = 252 bits (127), Expect = 6e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 473 aggaagtttggctatgtggattttgaatctgctgaagacctggaaaaagccttggaactc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145939909 aggaagtttggctatgtggattttgaatctgctgaagacctggaaaaagccttggaactc 145939968
Query: 533 actggtttaaaagtctttggcaatgaaattaaactagaaaaaccaaagggaaaagacagt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145939969 actggtttaaaagtctttggcaatgaaattaaactagaaaaaccaaagggaaaagacagt 145940028
Query: 593 aagaaag 599
|||||||
Sbjct: 145940029 aagaaag 145940035
Score = 252 bits (127), Expect = 6e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 598 agatcgagatgcgaggacgcttttggctaaaaatctgccttataaagttactcaggatga 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145941371 agatcgagatgcgaggacgcttttggctaaaaatctgccttataaagttactcaggatga 145941430
Query: 658 attaaaagaagtctttgaagatgccgtggagatcagattagtcagcaaggatggaaagag 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145941431 attaaaagaagtctttgaagatgccgtggagatcagattagtcagcaaggatggaaagag 145941490
Query: 718 taaaggg 724
|||||||
Sbjct: 145941491 taaaggg 145941497
Score = 83.8 bits (42), Expect = 3e-13
Identities = 69/74 (93%), Gaps = 3/74 (4%)
Strand = Plus / Minus
Query: 34 gctatggagacggt-ccagccaa-gggaaaaaagccccggcaaaagctgttcctgtgaag 91
|||||||||||||| |||||||| ||||| |||||||||||||||||||| |||| ||||
Sbjct: 145945384 gctatggagacggtaccagccaaagggaataaagccccggcaaaagctgtgcctg-gaag 145945326
Query: 92 gccaagagcactgc 105
||||||||||||||
Sbjct: 145945325 gccaagagcactgc 145945312
>Sscrofa_Chr03
|| Length = 144787322
Score = 168 bits (85), Expect = 7e-39
Identities = 137/153 (89%), Gaps = 1/153 (0%)
Strand = Plus / Plus
Query: 1598 catttgaaagaaaggactctggggtttttactctgttacctgatcactggcagagccttc 1657
|||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||
Sbjct: 24440480 catttgaaagaaaggactctggggtttttactctgttacctgattaatgaccgagccttc 24440539
Query: 1658 tgaggacattccaagacagcgtgcagccctgtggtctccttgggaatc-gtatagataac 1716
|||||||||||||| |||| | |||||||||| || ||||| |||| |||||||||||
Sbjct: 24440540 tgaggacattccaaaacagtatagagccctgtggcctacttggaaatctgtatagataac 24440599
Query: 1717 atttcaaaggcgataaccctgttggttttgact 1749
||||||| || ||||| ||||||||||||||||
Sbjct: 24440600 atttcaagggagataatcctgttggttttgact 24440632
Score = 97.6 bits (49), Expect = 2e-17
Identities = 95/109 (87%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 1742 ttttgactggatattgatataaacttttta-aagagatgagtgatagagctaacccttat 1800
||||||||| ||||| ||||||||||||| |||||||||| ||| |||||||||||||
Sbjct: 24440892 ttttgactgaatatttatataaactttttttaagagatgagcaatacagctaacccttat 24440951
Query: 1801 ctgtaagttttgaatttatattgtttcttcccatgtaaaaaaccttttt 1849
||||||||||||||| ||| |||||||||| |||| |||||| ||||
Sbjct: 24440952 ctgtaagttttgaatgtatgctgtttcttcctgtgtacaaaaccatttt 24441000
Score = 73.8 bits (37), Expect = 3e-10
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 1418 ggctttggaggtcgaggtggtggcagaggtggccgcggtggatttggtggcagaggccgg 1477
|||||||| || | ||| || ||| ||||||||| |||||||||||||||||||||| |
Sbjct: 24440184 ggctttggtggccaaggaggaggctgaggtggccaaggtggatttggtggcagaggccag 24440243
Query: 1478 ggaggctttggagggcg 1494
|||||||| ||||||||
Sbjct: 24440244 ggaggcttcggagggcg 24440260
Score = 69.9 bits (35), Expect = 5e-09
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 1365 gggccaagcctaagggcgaaggtggcttcggtggccgaggaggaggc 1411
|||||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 24440161 gggccaagcctaagggtgaaggtggctttggtggccaaggaggaggc 24440207
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 57,418,392
Number of extensions: 447
Number of successful extensions: 447
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 24
Length of query: 1884
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1862
Effective length of database: 2,808,408,574
Effective search space: 5229256764788
Effective search space used: 5229256764788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)