Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013456
(1026 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002694189.1| PREDICTED: agmatinase-like [Bos taurus]. 531 e-151
Alignment gi|XP_592369.3| PREDICTED: agmatine ureohydrolase (agmatinase) ... 531 e-151
Alignment gi|NP_001039619.1| arginase-1 [Bos taurus]. 62 8e-10
>ref|XP_002694189.1| PREDICTED: agmatinase-like [Bos taurus].
Length = 361
Score = 531 bits (1367), Expect = e-151
Identities = 261/297 (87%), Positives = 274/297 (92%)
Frame = +2
Query: 134 ASPATGLGNPGLSPSRQASNTPRNQPPKADFVARSVGICSMMRLPVQASPEGLDAAFIGV 313
A P GL +P SRQAS+ PRNQPP +FVARSVGICSMMRLPVQA+PEGLDAAF+GV
Sbjct: 28 ARPVAGLCDPSRRLSRQASDAPRNQPPSPEFVARSVGICSMMRLPVQATPEGLDAAFVGV 87
Query: 314 PLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQDSC 493
PLDIGTSNRPGAR+GPRRIREESVLLR NPSTGA+PFQ L VADLGDVNVNLYNLQDSC
Sbjct: 88 PLDIGTSNRPGARFGPRRIREESVLLRTTNPSTGAVPFQFLRVADLGDVNVNLYNLQDSC 147
Query: 494 RLIREAYQKIVAAGCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHMDTADKALGEK 673
RLIR YQKIVAAGC+PLTLGGDHTITYPILQA++EKHGPVGLVHVDAHMD ADKALGEK
Sbjct: 148 RLIRADYQKIVAAGCVPLTLGGDHTITYPILQAIAEKHGPVGLVHVDAHMDMADKALGEK 207
Query: 674 LYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTLDTYSYSRSQGFRVVLAEDCWLKSLVPL 853
LYHG+PFRRCV+EGLLDCKRVVQIGIRGSS TLDTY YSRSQGFRVVLAEDCWLKSLVPL
Sbjct: 208 LYHGTPFRRCVDEGLLDCKRVVQIGIRGSSTTLDTYRYSRSQGFRVVLAEDCWLKSLVPL 267
Query: 854 MGEVRQQMGGKPIYISFDIDSLDPAYAPGTGTLEIAGLTPSQALEIIRGCQSLNVVG 1024
MGEVRQQMGG+PIYISFDID LDPAYAPGTGT EIAGLTPSQALEIIRGCQ LNVVG
Sbjct: 268 MGEVRQQMGGRPIYISFDIDGLDPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVVG 324
>ref|XP_592369.3| PREDICTED: agmatine ureohydrolase (agmatinase) [Bos taurus].
Length = 361
Score = 531 bits (1367), Expect = e-151
Identities = 261/297 (87%), Positives = 274/297 (92%)
Frame = +2
Query: 134 ASPATGLGNPGLSPSRQASNTPRNQPPKADFVARSVGICSMMRLPVQASPEGLDAAFIGV 313
A P GL +P SRQAS+ PRNQPP +FVARSVGICSMMRLPVQA+PEGLDAAF+GV
Sbjct: 28 ARPVAGLCDPSRRLSRQASDAPRNQPPSPEFVARSVGICSMMRLPVQATPEGLDAAFVGV 87
Query: 314 PLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQDSC 493
PLDIGTSNRPGAR+GPRRIREESVLLR NPSTGA+PFQ L VADLGDVNVNLYNLQDSC
Sbjct: 88 PLDIGTSNRPGARFGPRRIREESVLLRTTNPSTGAVPFQFLRVADLGDVNVNLYNLQDSC 147
Query: 494 RLIREAYQKIVAAGCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHMDTADKALGEK 673
RLIR YQKIVAAGC+PLTLGGDHTITYPILQA++EKHGPVGLVHVDAHMD ADKALGEK
Sbjct: 148 RLIRADYQKIVAAGCVPLTLGGDHTITYPILQAIAEKHGPVGLVHVDAHMDMADKALGEK 207
Query: 674 LYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTLDTYSYSRSQGFRVVLAEDCWLKSLVPL 853
LYHG+PFRRCV+EGLLDCKRVVQIGIRGSS TLDTY YSRSQGFRVVLAEDCWLKSLVPL
Sbjct: 208 LYHGTPFRRCVDEGLLDCKRVVQIGIRGSSTTLDTYRYSRSQGFRVVLAEDCWLKSLVPL 267
Query: 854 MGEVRQQMGGKPIYISFDIDSLDPAYAPGTGTLEIAGLTPSQALEIIRGCQSLNVVG 1024
MGEVRQQMGG+PIYISFDID LDPAYAPGTGT EIAGLTPSQALEIIRGCQ LNVVG
Sbjct: 268 MGEVRQQMGGRPIYISFDIDGLDPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVVG 324
>ref|NP_001039619.1| arginase-1 [Bos taurus].
Length = 322
Score = 62.0 bits (149), Expect = 8e-10
Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 27/256 (10%)
Frame = +2
Query: 305 IGVPLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQ 484
IG P G R G GP +R+ +L + + L AD +++ + + +
Sbjct: 11 IGAPFSKGQP-RGGVEEGPTVLRKAGLLEKLKELECDVKDYGDLSFAD--NLDDSPFQIV 67
Query: 485 DSCRLIREAYQKIV-------AAGCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHM 643
+ R + +A +K+ G I L LGGDH++ + + H + ++ VDAH
Sbjct: 68 KNPRCVGKASEKLADVVAEVKKTGRISLVLGGDHSLAIGSISGHARVHPDLCVIWVDAHT 127
Query: 644 DTADKALGEKL--YHGSPFRRCVEE---------------GLLDCKRVVQIGIRGSSLTL 772
D + L K HG P ++E + K +V IG+R +
Sbjct: 128 DI-NTPLTTKTGNLHGQPVSFLLKELKEKMPEVPGFYWVAPCISAKDIVYIGLR--DVDP 184
Query: 773 DTYSYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGK---PIYISFDIDSLDPAYAPGT 943
+ ++ G + + + +M E + G+ PI++SFD+D LDP++ P T
Sbjct: 185 GEHYILKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPSFTPAT 244
Query: 944 GTLEIAGLTPSQALEI 991
GT GLT + L I
Sbjct: 245 GTPVQGGLTYREGLYI 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,479,040
Number of extensions: 1373673
Number of successful extensions: 9261
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8897
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013456
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013456
(1026 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544555.2| PREDICTED: similar to Agmatinase, mitochondrial... 520 e-148
Alignment gi|XP_866822.1| PREDICTED: similar to Arginase II, mitochondria... 67 2e-11
Alignment gi|XP_532053.2| PREDICTED: similar to arginase, type I [Canis f... 55 1e-07
>ref|XP_544555.2| PREDICTED: similar to Agmatinase, mitochondrial precursor (Agmatine
ureohydrolase) (AUH) [Canis familiaris].
Length = 352
Score = 520 bits (1339), Expect = e-148
Identities = 251/297 (84%), Positives = 274/297 (92%)
Frame = +2
Query: 134 ASPATGLGNPGLSPSRQASNTPRNQPPKADFVARSVGICSMMRLPVQASPEGLDAAFIGV 313
A P +GL PG S S + + RNQPP ++F+AR VG+CSMMRLPVQASPEGLDAAF+GV
Sbjct: 19 ARPVSGLSPPGRSASSGSPDASRNQPPSSEFLARPVGVCSMMRLPVQASPEGLDAAFVGV 78
Query: 314 PLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQDSC 493
PLDIGTSNRPGAR+GPRRIREESVLLR ANPSTGALPFQSLMVADLGDVNVNLYNLQDSC
Sbjct: 79 PLDIGTSNRPGARFGPRRIREESVLLRTANPSTGALPFQSLMVADLGDVNVNLYNLQDSC 138
Query: 494 RLIREAYQKIVAAGCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHMDTADKALGEK 673
RLIREAY+KIVAAGCIPLTLGGDHTITYPILQAM++KHGPVGL+HVDAH DTADKALGEK
Sbjct: 139 RLIREAYEKIVAAGCIPLTLGGDHTITYPILQAMAKKHGPVGLLHVDAHTDTADKALGEK 198
Query: 674 LYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTLDTYSYSRSQGFRVVLAEDCWLKSLVPL 853
+YHG+PFRRCV+EGLLDC+RVVQ+GIRGS+ TLD Y YSRSQGFRVVLAEDCW+KSLVPL
Sbjct: 199 VYHGTPFRRCVDEGLLDCERVVQVGIRGSATTLDPYRYSRSQGFRVVLAEDCWMKSLVPL 258
Query: 854 MGEVRQQMGGKPIYISFDIDSLDPAYAPGTGTLEIAGLTPSQALEIIRGCQSLNVVG 1024
M +VR+QMGGKP+YISFDID LDPAYAPGTGT EIAGLTPSQ LEIIRGCQ LNVVG
Sbjct: 259 MADVRRQMGGKPLYISFDIDGLDPAYAPGTGTPEIAGLTPSQGLEIIRGCQGLNVVG 315
>ref|XP_866822.1| PREDICTED: similar to Arginase II, mitochondrial precursor
(Non-hepatic arginase) (Kidney-type arginase) isoform 4
[Canis familiaris].
Length = 350
Score = 67.4 bits (163), Expect = 2e-11
Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 21/252 (8%)
Frame = +2
Query: 299 AFIGVPLDIGTSNRPGARYGPRRIREESVLLRPAN-----PSTGALPFQSLMVADL-GDV 460
A IG P G R G YGP IRE ++ R ++ G L F + DL ++
Sbjct: 27 AVIGAPFSQG-QKRKGVEYGPAAIREAGLMKRLSSLGCQLKDFGDLSFTPVPKDDLYNNL 85
Query: 461 NVNLYNLQDSCRLIREAYQKIVAAGCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAH 640
VN ++ + + + E + V++G +T+GGDH++ + + + ++ VDAH
Sbjct: 86 IVNPRSVGLANQELAEVVSRAVSSGYSCVTMGGDHSLAIGTISGHARHCPDLCVIWVDAH 145
Query: 641 MD-TADKALGEKLYHGSPFRRCVEE-----------GLLDCKRVVQIGIRGSSLTLDTYS 784
D HG P + E + ++ IG+R + +
Sbjct: 146 ADINTPLTTSSGNLHGQPVSFLLRELQDKVRFSWIKPCISSPNIIYIGLR--DVDPPEHF 203
Query: 785 YSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGK---PIYISFDIDSLDPAYAPGTGTLE 955
++ + D + +M + + GK PI++SFDID+ DP AP TGT
Sbjct: 204 ILKNYDIQYFSMRDIDRLGIQKVMEQTFDLLIGKRQRPIHLSFDIDAFDPTLAPATGTPV 263
Query: 956 IAGLTPSQALEI 991
+ GLT + + I
Sbjct: 264 VGGLTYREGMYI 275
>ref|XP_532053.2| PREDICTED: similar to arginase, type I [Canis familiaris].
Length = 403
Score = 55.1 bits (131), Expect = 1e-07
Identities = 60/250 (24%), Positives = 102/250 (40%), Gaps = 32/250 (12%)
Frame = +2
Query: 338 RPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVN-VNL-----YNLQDSCRL 499
R G GP +R+ +L + L Q V D GDV V++ + + + R
Sbjct: 102 RGGVEKGPTALRKAGLLEK--------LKEQDCDVKDYGDVPFVDVPSDPPFQIVKNPRS 153
Query: 500 IREAYQKIVAA-------GCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHMD-TAD 655
+ +A +++ G L LGGDH++ + + H + ++ VDAH D
Sbjct: 154 VGKANEQLAGVVAEVKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDINTP 213
Query: 656 KALGEKLYHGSPFRRCVEE---------------GLLDCKRVVQIGIRGSSLTLDTYSYS 790
HG P ++E L K +V IG+R + +
Sbjct: 214 LTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCLSAKDIVYIGLR--DVDPGEHYIL 271
Query: 791 RSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGK---PIYISFDIDSLDPAYAPGTGTLEIA 961
++ G + + + +M E + G+ PI++SFD+D LDP++ P TGT
Sbjct: 272 KTLGIKYFSMTEVDKLGIGKVMEEALSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVTG 331
Query: 962 GLTPSQALEI 991
GL+ + L I
Sbjct: 332 GLSYREGLYI 341
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,477,945
Number of extensions: 1423128
Number of successful extensions: 9371
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8924
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013456
(1026 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127670.1| PREDICTED: agmatinase, mitochondrial-like [S... 609 e-175
Alignment gi|NP_999213.1| arginase-1 [Sus scrofa]. 57 2e-08
>ref|XP_003127670.1| PREDICTED: agmatinase, mitochondrial-like [Sus scrofa].
Length = 361
Score = 609 bits (1570), Expect = e-175
Identities = 306/324 (94%), Positives = 306/324 (94%)
Frame = +2
Query: 53 MLQLLVSXXXXXXXXXXXXXXXXPLHPASPATGLGNPGLSPSRQASNTPRNQPPKADFVA 232
MLQLLVS PLHPASPATGLGNPGLSPSRQASNTPRNQPPKADFVA
Sbjct: 1 MLQLLVSGCARGLRAGVGVRGLLPLHPASPATGLGNPGLSPSRQASNTPRNQPPKADFVA 60
Query: 233 RSVGICSMMRLPVQASPEGLDAAFIGVPLDIGTSNRPGARYGPRRIREESVLLRPANPST 412
RSVGICSMMRLPVQASPEGLDAAFIGVPLDIGTSNRPGARYGPRRIREESVLLRPANPST
Sbjct: 61 RSVGICSMMRLPVQASPEGLDAAFIGVPLDIGTSNRPGARYGPRRIREESVLLRPANPST 120
Query: 413 GALPFQSLMVADLGDVNVNLYNLQDSCRLIREAYQKIVAAGCIPLTLGGDHTITYPILQA 592
GALPFQSLMVADLGDVNVNLYNLQDSCRLIREAYQKIVAAGCIPLTLGGDHTITYPILQA
Sbjct: 121 GALPFQSLMVADLGDVNVNLYNLQDSCRLIREAYQKIVAAGCIPLTLGGDHTITYPILQA 180
Query: 593 MSEKHGPVGLVHVDAHMDTADKALGEKLYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTL 772
MSEKHGPVGLVHVDAHMDTADKALGEKLYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTL
Sbjct: 181 MSEKHGPVGLVHVDAHMDTADKALGEKLYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTL 240
Query: 773 DTYSYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGKPIYISFDIDSLDPAYAPGTGTL 952
DTYSYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGKPIYISFDIDSLDPAYAPGTGT
Sbjct: 241 DTYSYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGKPIYISFDIDSLDPAYAPGTGTP 300
Query: 953 EIAGLTPSQALEIIRGCQSLNVVG 1024
EIAGLTPSQALEIIRGCQ LNVVG
Sbjct: 301 EIAGLTPSQALEIIRGCQGLNVVG 324
>ref|NP_999213.1| arginase-1 [Sus scrofa].
Length = 322
Score = 56.6 bits (135), Expect = 2e-08
Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 26/255 (10%)
Frame = +2
Query: 305 IGVPLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQ 484
IG P G R G GP +R+ +L + + L AD+ N + +
Sbjct: 11 IGAPFSKGQP-RGGVEEGPTALRKAGLLEKLKEQECDVKDYGDLCFADVP--NDTPFQIV 67
Query: 485 DSCRLIREAYQKIVAA-------GCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHM 643
+ R + +A Q++ G L LGGDH++ + + H + ++ VDAH
Sbjct: 68 KNPRSVGKANQQLADVVAEIKKNGRTSLVLGGDHSMAIGSISGHARVHPDLCVIWVDAHT 127
Query: 644 D-TADKALGEKLYHGSPFRRCVEE---------GL------LDCKRVVQIGIRGSSLTLD 775
D HG P ++E GL L K +V IG+R +
Sbjct: 128 DINTPLTTTTGNLHGQPVSFLLKELKEKIPEVPGLSWVTPCLSAKDIVYIGLR--DVDPA 185
Query: 776 TYSYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGK---PIYISFDIDSLDPAYAPGTG 946
+ ++ G + + + +M E + G+ PI++SFD+D LDP + P TG
Sbjct: 186 EHYILKTLGIKYFSMIEVDKLGIGKVMEEAFSYLLGRKKRPIHLSFDVDGLDPFFTPATG 245
Query: 947 TLEIAGLTPSQALEI 991
T GL+ + + I
Sbjct: 246 TPVHGGLSYREGIYI 260
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,176,704
Number of extensions: 892407
Number of successful extensions: 6148
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5890
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013456
(1026 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074877.1| agmatinase, mitochondrial precursor [Mus mus... 456 e-128
Alignment gi|NP_031508.1| arginase-1 [Mus musculus]. 61 1e-09
>ref|NP_001074877.1| agmatinase, mitochondrial precursor [Mus musculus].
Length = 358
Score = 456 bits (1172), Expect = e-128
Identities = 230/300 (76%), Positives = 256/300 (85%), Gaps = 5/300 (1%)
Frame = +2
Query: 140 PATGLGNPGLSPSRQAS---NTPRNQPPKADFVAR--SVGICSMMRLPVQASPEGLDAAF 304
P+ GL PG RQAS +TP +Q P ++ + VG+CSMMRLP+Q+SPEGLDAAF
Sbjct: 22 PSAGLFRPGCPGIRQASGASDTPHHQSPSSESPVQPVGVGVCSMMRLPLQSSPEGLDAAF 81
Query: 305 IGVPLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQ 484
IGVPLD GTSNRPGAR+GP RIREES++L NPSTGALPFQSL VADLG+VNVNLYNLQ
Sbjct: 82 IGVPLDTGTSNRPGARFGPCRIREESLMLGAVNPSTGALPFQSLRVADLGNVNVNLYNLQ 141
Query: 485 DSCRLIREAYQKIVAAGCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHMDTADKAL 664
DSC LIREAYQ ++AAGCIPLTLGGD TITYPILQA++++HGPVGLVHV AH +T DK
Sbjct: 142 DSCLLIREAYQNVLAAGCIPLTLGGDQTITYPILQAVAKEHGPVGLVHVGAHTNTTDKPR 201
Query: 665 GEKLYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTLDTYSYSRSQGFRVVLAEDCWLKSL 844
EK+YH +PFRR V+EGLLD KRVVQIGIRGSS TLD Y YSRSQGFRVVLAEDCW+KSL
Sbjct: 202 EEKVYHRTPFRRSVDEGLLDSKRVVQIGIRGSSRTLDPYRYSRSQGFRVVLAEDCWMKSL 261
Query: 845 VPLMGEVRQQMGGKPIYISFDIDSLDPAYAPGTGTLEIAGLTPSQALEIIRGCQSLNVVG 1024
VPLM EVRQQMGGKP+YISF ID+LDPAYAPGTGT EIAGLTPSQALEIIRGCQ LNVVG
Sbjct: 262 VPLMAEVRQQMGGKPLYISFAIDALDPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVVG 321
>ref|NP_031508.1| arginase-1 [Mus musculus].
Length = 323
Score = 61.2 bits (147), Expect = 1e-09
Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 26/267 (9%)
Frame = +2
Query: 269 VQASPEGLDAAFIGVPLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVAD 448
+ + P+ L+ IG P G R G GP +R+ +L + L D
Sbjct: 1 MSSKPKSLE--IIGAPFSKGQP-RGGVEKGPAALRKAGLLEKLKETEYDVRDHGDLAFVD 57
Query: 449 LGDVNVNLYNLQDSCRLIREAYQKIVAA-------GCIPLTLGGDHTITYPILQAMSEKH 607
+ N + + + + R + +A +++ G + + LGGDH++ + + H
Sbjct: 58 VP--NDSSFQIVKNPRSVGKANEELAGVVAEVQKNGRVSVVLGGDHSLAVGSISGHARVH 115
Query: 608 GPVGLVHVDAHMD-TADKALGEKLYHGSPFRRCVEE---------------GLLDCKRVV 739
+ ++ VDAH D HG P ++E + K +V
Sbjct: 116 PDLCVIWVDAHTDINTPLTTSSGNLHGQPVSFLLKELKGKFPDVPGFSWVTPCISAKDIV 175
Query: 740 QIGIRGSSLTLDTYSYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGK---PIYISFDI 910
IG+R + + ++ G + + + +M E + G+ PI++SFD+
Sbjct: 176 YIGLR--DVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDV 233
Query: 911 DSLDPAYAPGTGTLEIAGLTPSQALEI 991
D LDPA+ P TGT + GL+ + L I
Sbjct: 234 DGLDPAFTPATGTPVLGGLSYREGLYI 260
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,135,940
Number of extensions: 1125293
Number of successful extensions: 6984
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6699
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013456
(1026 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079034.3| agmatinase, mitochondrial precursor [Homo sapie... 527 e-150
Alignment gi|NP_000036.2| arginase-1 [Homo sapiens]. 68 2e-11
>ref|NP_079034.3| agmatinase, mitochondrial precursor [Homo sapiens].
Length = 352
Score = 527 bits (1357), Expect = e-150
Identities = 257/297 (86%), Positives = 274/297 (92%)
Frame = +2
Query: 134 ASPATGLGNPGLSPSRQASNTPRNQPPKADFVARSVGICSMMRLPVQASPEGLDAAFIGV 313
A PA GL +PG SRQAS+ PRNQPP +FVAR VG+CSMMRLPVQ SPEGLDAAFIGV
Sbjct: 19 ARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLPVQTSPEGLDAAFIGV 78
Query: 314 PLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQDSC 493
PLD GTSNRPGAR+GPRRIREESV+L NPSTGALPFQSLMVADLGDVNVNLYNLQDSC
Sbjct: 79 PLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLMVADLGDVNVNLYNLQDSC 138
Query: 494 RLIREAYQKIVAAGCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHMDTADKALGEK 673
R I+EAY+KIVAAGCIPLTLGGDHTITYPILQAM++KHGPVGL+HVDAH DT DKALGEK
Sbjct: 139 RRIQEAYEKIVAAGCIPLTLGGDHTITYPILQAMAKKHGPVGLLHVDAHTDTTDKALGEK 198
Query: 674 LYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTLDTYSYSRSQGFRVVLAEDCWLKSLVPL 853
LYHG+PFRRCV+EGLLDCKRVVQIGIRGSS TLD Y Y+RSQGFRVVLAEDCW+KSLVPL
Sbjct: 199 LYHGAPFRRCVDEGLLDCKRVVQIGIRGSSTTLDPYRYNRSQGFRVVLAEDCWMKSLVPL 258
Query: 854 MGEVRQQMGGKPIYISFDIDSLDPAYAPGTGTLEIAGLTPSQALEIIRGCQSLNVVG 1024
MGEVRQQMGGKPIYISFDID+LDPAYAPGTGT EIAGLTPSQALEIIRGCQ LNV+G
Sbjct: 259 MGEVRQQMGGKPIYISFDIDALDPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVMG 315
>ref|NP_000036.2| arginase-1 [Homo sapiens].
Length = 322
Score = 67.8 bits (164), Expect = 2e-11
Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 30/259 (11%)
Frame = +2
Query: 305 IGVPLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQ 484
IG P G R G GP +R+ +L + + L AD+ N + + +
Sbjct: 11 IGAPFSKGQP-RGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIP--NDSPFQIV 67
Query: 485 DSCRLIREAYQKIVAA-------GCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHM 643
+ R + +A +++ G I L LGGDH++ + + H +G++ VDAH
Sbjct: 68 KNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHT 127
Query: 644 D-TADKALGEKLYHGSPFRRCVEE---------------GLLDCKRVVQIGIR----GSS 763
D HG P ++E + K +V IG+R G
Sbjct: 128 DINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEH 187
Query: 764 LTLDTYS---YSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGKPIYISFDIDSLDPAYA 934
L T +S ++ R+ + + ++L L+G + +PI++SFD+D LDP++
Sbjct: 188 YILKTLGIKYFSMTEVDRLGIGK-VMEETLSYLLGRKK-----RPIHLSFDVDGLDPSFT 241
Query: 935 PGTGTLEIAGLTPSQALEI 991
P TGT + GLT + L I
Sbjct: 242 PATGTPVVGGLTYREGLYI 260
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,356,851
Number of extensions: 1377583
Number of successful extensions: 9186
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8784
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013456
(1026 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 672 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 672 bits (339), Expect = 0.0
Identities = 348/351 (99%)
Strand = Plus / Plus
Query: 1 gcacattctcctgggctacggtggggaacagcagggccggcacgggggcaggatgctgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 69201707 gcacattctcctgggctacggtggggaacagcagggccggcacgggggcaggatgcttca 69201766
Query: 61 gctgctggtttctggctgtgtccgaggcctaagggccggcgtgggcgtgcgggggctgct 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 69201767 gctgctggtttctggctgtgcccgaggcctaagggccggcgtgggcgtgcgggggctgct 69201826
Query: 121 tcccctgcacccagcgagtcctgctacagggcttggcaacccaggcctcagcccgagccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69201827 tcccctgcacccagcgagtcctgctacagggcttggcaacccaggcctcagcccgagccg 69201886
Query: 181 ccaagcctccaacactccccggaaccagcctcccaaagctgatttcgtggcccggtcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69201887 ccaagcctccaacactccccggaaccagcctcccaaagctgatttcgtggcccggtcagt 69201946
Query: 241 gggcatctgttccatgatgcggctgccagtgcaggcctcccccgagggactggacgctgc 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 69201947 gggcatctgttccatgatgcggctgcccgtgcaggcctcccccgagggactggacgctgc 69202006
Query: 301 cttcatcggggtgcccctggacattgggacctccaaccggcccggggcaag 351
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69202007 cttcatcggggtgcccctggacattgggacctccaaccggcccggggcaag 69202057
Score = 410 bits (207), Expect = e-112
Identities = 207/207 (100%)
Strand = Plus / Plus
Query: 350 agatatggaccccgacggatccgggaggaatcagtgctgcttcgcccggccaaccccagc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69204221 agatatggaccccgacggatccgggaggaatcagtgctgcttcgcccggccaaccccagc 69204280
Query: 410 acgggagccctccccttccagtccctcatggtcgcagacctaggagatgtgaatgtcaac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69204281 acgggagccctccccttccagtccctcatggtcgcagacctaggagatgtgaatgtcaac 69204340
Query: 470 ctttacaaccttcaggacagctgccgcctcattcgagaggcctatcagaaaatcgtggca 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69204341 ctttacaaccttcaggacagctgccgcctcattcgagaggcctatcagaaaatcgtggca 69204400
Query: 530 gctggctgtatccctctgaccttgggt 556
|||||||||||||||||||||||||||
Sbjct: 69204401 gctggctgtatccctctgaccttgggt 69204427
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 604 gcacggccccgtggggctggtgcatgtggacgcgcacatggacacggcggacaaggccct 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69207366 gcacggccccgtggggctggtgcatgtggacgcgcacatggacacggcggacaaggccct 69207425
Query: 664 gggggagaagctctaccacgggtcgccctttcgccgatgcgtggaggagggactcttgga 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69207426 gggggagaagctctaccacgggtcgccctttcgccgatgcgtggaggagggactcttgga 69207485
Query: 724 ctgtaagcgcgtggtgcagattggcatccggggctcttccctgaccttggacacctacag 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69207486 ctgtaagcgcgtggtgcagattggcatccggggctcttccctgaccttggacacctacag 69207545
Query: 784 ctatagccggagccagg 800
|||||||||||||||||
Sbjct: 69207546 ctatagccggagccagg 69207562
Score = 349 bits (176), Expect = 2e-93
Identities = 182/184 (98%)
Strand = Plus / Plus
Query: 797 cagggctttcgggtggtcctggctgaagactgctggctgaagtcactggttcctctgatg 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69209029 cagggctttcgggtggtcctggctgaagactgctggctgaagtcactggttcctctgatg 69209088
Query: 857 ggggaagtgaggcagcaaatgggaggcaaacccatttatatcagctttgatattgacagc 916
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69209089 ggggaagtgaggcagcagatgggaggcaaacccatttatatcagctttgatattgacagc 69209148
Query: 917 ttggatcccgcctatgccccagggacggggacacttgaaattgctggcctgaccccgagt 976
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 69209149 ttggatcccgcctatgccccagggacggggacacctgaaattgctggcctgaccccgagt 69209208
Query: 977 cagg 980
||||
Sbjct: 69209209 cagg 69209212
Score = 202 bits (102), Expect = 3e-49
Identities = 153/168 (91%), Gaps = 4/168 (2%)
Strand = Plus / Plus
Query: 1 gcacattctcctgggctacggtggggaacagcagggccggcacgggggcaggatgctgca 60
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 69199976 gcacactctcctgggctacagtggggaacagcagggccggcacgggggcaggatgctgca 69200035
Query: 61 gctgctggtttctggctgtgtccgaggcctaagggccggcgtgggcgtgcgg---gggc- 116
|||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||
Sbjct: 69200036 gctgctggtttctggctgtgtccgaggcctaagggccggcacgggcatgcagcaagggcg 69200095
Query: 117 tgcttcccctgcacccagcgagtcctgctacagggcttggcaacccag 164
| |||||||||||||||| |||||||||| |||||||| || ||||||
Sbjct: 69200096 tacttcccctgcacccagagagtcctgctgcagggcttagccacccag 69200143
Score = 101 bits (51), Expect = 7e-19
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 554 ggtggagatcacaccatcacatatcccatattgcaggcgatgtcagaaaag 604
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69206268 ggtggagatcacaccatcacatatcccatattgcaggcgatgtcagaaaag 69206318
Score = 85.7 bits (43), Expect = 4e-14
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 977 caggctctggagatcatccgaggttgtcaaagcctgaacgtggtggg 1023
|||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 69210302 caggctctggagatcatccgaggttgtcaaggcctgaacgtggtggg 69210348
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,357,428
Number of extensions: 156
Number of successful extensions: 156
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 8
Length of query: 1026
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1005
Effective length of database: 2,808,413,156
Effective search space: 2822455221780
Effective search space used: 2822455221780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)