Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013457
(1038 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864456.1| PREDICTED: similar to Septin-6 isoform 7 [Canis... 510 e-145
Alignment gi|XP_864438.1| PREDICTED: similar to Septin-6 isoform 6 [Canis... 510 e-145
Alignment gi|XP_851778.1| PREDICTED: similar to Septin-6 isoform 1 [Canis... 510 e-145
Alignment gi|XP_864397.1| PREDICTED: similar to septin 6 isoform D isofor... 510 e-145
Alignment gi|XP_864332.1| PREDICTED: similar to Septin-6 isoform 2 [Canis... 510 e-145
Alignment gi|XP_864374.1| PREDICTED: similar to Septin-6 isoform 4 [Canis... 508 e-144
Alignment gi|XP_864355.1| PREDICTED: similar to Septin-6 isoform 3 [Canis... 507 e-144
Alignment gi|XP_535616.2| PREDICTED: similar to Septin-11 [Canis familiar... 426 e-119
Alignment gi|XP_531903.2| PREDICTED: similar to Septin-8 [Canis familiari... 401 e-112
Alignment gi|XP_540501.2| PREDICTED: similar to septin 10 isoform 1 [Cani... 357 1e-98
>ref|XP_864456.1| PREDICTED: similar to Septin-6 isoform 7 [Canis familiaris].
Length = 427
Score = 510 bits (1313), Expect = e-145
Identities = 255/257 (99%), Positives = 256/257 (99%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMMKARQYPWGT +VE
Sbjct: 248 NKMMKARQYPWGTVQVE 264
>ref|XP_864438.1| PREDICTED: similar to Septin-6 isoform 6 [Canis familiaris].
Length = 427
Score = 510 bits (1313), Expect = e-145
Identities = 255/257 (99%), Positives = 256/257 (99%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMMKARQYPWGT +VE
Sbjct: 248 NKMMKARQYPWGTVQVE 264
>ref|XP_851778.1| PREDICTED: similar to Septin-6 isoform 1 [Canis familiaris].
Length = 434
Score = 510 bits (1313), Expect = e-145
Identities = 255/257 (99%), Positives = 256/257 (99%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMMKARQYPWGT +VE
Sbjct: 248 NKMMKARQYPWGTVQVE 264
>ref|XP_864397.1| PREDICTED: similar to septin 6 isoform D isoform 5 [Canis
familiaris].
Length = 429
Score = 510 bits (1313), Expect = e-145
Identities = 255/257 (99%), Positives = 256/257 (99%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMMKARQYPWGT +VE
Sbjct: 248 NKMMKARQYPWGTVQVE 264
>ref|XP_864332.1| PREDICTED: similar to Septin-6 isoform 2 [Canis familiaris].
Length = 470
Score = 510 bits (1313), Expect = e-145
Identities = 255/257 (99%), Positives = 256/257 (99%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMMKARQYPWGT +VE
Sbjct: 248 NKMMKARQYPWGTVQVE 264
>ref|XP_864374.1| PREDICTED: similar to Septin-6 isoform 4 [Canis familiaris].
Length = 284
Score = 508 bits (1307), Expect = e-144
Identities = 254/259 (98%), Positives = 256/259 (98%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVEMK 899
NKMMKARQYPWGT + E +
Sbjct: 248 NKMMKARQYPWGTVQGEKR 266
>ref|XP_864355.1| PREDICTED: similar to Septin-6 isoform 3 [Canis familiaris].
Length = 264
Score = 507 bits (1306), Expect = e-144
Identities = 253/253 (100%), Positives = 253/253 (100%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGT 881
NKMMKARQYPWGT
Sbjct: 248 NKMMKARQYPWGT 260
>ref|XP_535616.2| PREDICTED: similar to Septin-11 [Canis familiaris].
Length = 453
Score = 426 bits (1096), Expect = e-119
Identities = 208/253 (82%), Positives = 231/253 (91%)
Frame = +3
Query: 135 EGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEP 314
E R + L+GHVGFDSLPDQLVNKS SQGFCFNILCVGETG+GKSTLMDTLFNTKFE +P
Sbjct: 35 EELRNLSLSGHVGFDSLPDQLVNKSTSQGFCFNILCVGETGIGKSTLMDTLFNTKFESDP 94
Query: 315 ATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQ 494
ATH +PGV+L++ +Y+LQESNV LKLTIV TVGFGDQINK+DSYKPIVE+IDAQFEAYLQ
Sbjct: 95 ATHNEPGVRLKARSYELQESNVRLKLTIVDTVGFGDQINKDDSYKPIVEYIDAQFEAYLQ 154
Query: 495 EELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISK 674
EELKI+R L YHD+RIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D I+K
Sbjct: 155 EELKIKRSLFNYHDTRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTIAK 214
Query: 675 SELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMM 854
+EL KFK KI SELVSNGVQIYQFPTD+E+VAEIN TM+ HLPFAV+GSTEE+KIGNKM
Sbjct: 215 NELHKFKSKIMSELVSNGVQIYQFPTDEETVAEINATMSVHLPFAVVGSTEEVKIGNKMA 274
Query: 855 KARQYPWGTGRVE 893
KARQYPWG +VE
Sbjct: 275 KARQYPWGVVQVE 287
>ref|XP_531903.2| PREDICTED: similar to Septin-8 [Canis familiaris].
Length = 531
Score = 401 bits (1031), Expect = e-112
Identities = 198/250 (79%), Positives = 221/250 (88%)
Frame = +3
Query: 144 RTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATH 323
R + L GHVGFDSLPDQLV+KSV+QGF FNILCVGETG+GKSTLM+TLFNT FE E A+H
Sbjct: 65 RNLSLGGHVGFDSLPDQLVSKSVTQGFSFNILCVGETGIGKSTLMNTLFNTTFETEEASH 124
Query: 324 TQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEEL 503
+ V+LR TYDLQESNV LKLTIV VGFGDQINK++SY+PIV++IDAQFE YLQEEL
Sbjct: 125 HEECVRLRPQTYDLQESNVHLKLTIVDAVGFGDQINKDESYRPIVDYIDAQFENYLQEEL 184
Query: 504 KIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSEL 683
KIRR L YHD+RIH CLYFI PTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D ISKSEL
Sbjct: 185 KIRRSLFDYHDTRIHVCLYFITPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTISKSEL 244
Query: 684 TKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMKAR 863
KFKIKI ELVSNGVQIYQFPTDDE+VAEIN MNAHLPFAV+GSTEE+K+GNK+++AR
Sbjct: 245 HKFKIKIMGELVSNGVQIYQFPTDDEAVAEINAVMNAHLPFAVVGSTEEVKVGNKLVRAR 304
Query: 864 QYPWGTGRVE 893
QYPWG +VE
Sbjct: 305 QYPWGVVQVE 314
>ref|XP_540501.2| PREDICTED: similar to septin 10 isoform 1 [Canis familiaris].
Length = 432
Score = 357 bits (916), Expect = 1e-98
Identities = 168/256 (65%), Positives = 209/256 (81%)
Frame = +3
Query: 126 QVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE 305
Q G+ R + + GH GF+ LP QLVN+S+ QGF FNILCVGETG+GKSTL+DTLFNT +
Sbjct: 19 QKGDSVRCLTMLGHFGFECLPHQLVNRSIQQGFSFNILCVGETGIGKSTLIDTLFNTNLK 78
Query: 306 GEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEA 485
+ ++H V L+ TY+LQE+NV LKLT+V TVG+GDQINKE SY+PIV+++DAQFEA
Sbjct: 79 DKKSSHFYSNVGLKIQTYELQENNVQLKLTVVRTVGYGDQINKEASYQPIVDYVDAQFEA 138
Query: 486 YLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDA 665
YLQEELKI+R YHDSRIH CLYFI+PTGHSLKSLDL+TMK +DSKVNI+P+IAK+D
Sbjct: 139 YLQEELKIKRSFTDYHDSRIHVCLYFISPTGHSLKSLDLLTMKNIDSKVNIVPLIAKADT 198
Query: 666 ISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGN 845
ISK +L KFK KI +ELVSNG+QIYQFPTDDE A+ N +MN LPFAV+GS +E+K+G
Sbjct: 199 ISKYDLQKFKCKIMTELVSNGIQIYQFPTDDEPTAQANSSMNGQLPFAVVGSMDEVKVGK 258
Query: 846 KMMKARQYPWGTGRVE 893
+M++ RQYPWG +VE
Sbjct: 259 RMVRGRQYPWGVLQVE 274
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,656,638
Number of extensions: 1173079
Number of successful extensions: 4010
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3942
Number of HSP's successfully gapped: 27
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013457
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013457
(1038 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030507.1| septin-6 [Bos taurus]. 509 e-144
Alignment gi|NP_001075916.1| septin-11 [Bos taurus]. 427 e-120
Alignment gi|NP_001069698.1| septin-8 [Bos taurus]. 402 e-112
Alignment gi|NP_001039641.1| septin-10 [Bos taurus]. 400 e-112
Alignment gi|NP_001095557.1| septin-14 [Bos taurus]. 342 2e-94
Alignment gi|XP_002696247.1| PREDICTED: OVARIAN/Breast septin gamma-like ... 215 6e-56
Alignment gi|XP_001790165.2| PREDICTED: septin 9 [Bos taurus]. 215 6e-56
Alignment gi|NP_001001168.1| septin-7 [Bos taurus]. 210 2e-54
Alignment gi|NP_001070417.1| neuronal-specific septin-3 [Bos taurus]. 201 1e-51
Alignment gi|NP_001039557.1| septin-2 [Bos taurus]. 200 2e-51
>ref|NP_001030507.1| septin-6 [Bos taurus].
Length = 427
Score = 509 bits (1310), Expect = e-144
Identities = 254/257 (98%), Positives = 256/257 (99%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELV+NGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVNNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMMKARQYPWGT +VE
Sbjct: 248 NKMMKARQYPWGTVQVE 264
>ref|NP_001075916.1| septin-11 [Bos taurus].
Length = 425
Score = 427 bits (1098), Expect = e-120
Identities = 209/257 (81%), Positives = 232/257 (90%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
R E R + L+GHVGFDSLPDQLVNKS SQGFCFNILCVGETG+GKSTLMDTLFNTKF
Sbjct: 7 RPSNEELRNLSLSGHVGFDSLPDQLVNKSTSQGFCFNILCVGETGIGKSTLMDTLFNTKF 66
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
E +PATH +PGV+L++ +Y+LQESNV LKLTIV TVGFGDQINK+DSYKPIVE+IDAQFE
Sbjct: 67 ESDPATHNEPGVRLKARSYELQESNVRLKLTIVDTVGFGDQINKDDSYKPIVEYIDAQFE 126
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKI+R L YHD+RIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D
Sbjct: 127 AYLQEELKIKRSLFNYHDTRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKAD 186
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
I+K+EL KFK KI SELVSNGVQIYQFPTD+E+VAEIN TM+ HLPFAV+GSTEE+KIG
Sbjct: 187 TIAKNELHKFKSKIMSELVSNGVQIYQFPTDEETVAEINATMSVHLPFAVVGSTEEVKIG 246
Query: 843 NKMMKARQYPWGTGRVE 893
NKM KARQYPWG +VE
Sbjct: 247 NKMAKARQYPWGVVQVE 263
>ref|NP_001069698.1| septin-8 [Bos taurus].
Length = 442
Score = 402 bits (1032), Expect = e-112
Identities = 198/250 (79%), Positives = 222/250 (88%)
Frame = +3
Query: 144 RTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATH 323
R++ L GHVGFDSLPDQLV+KSV+QGF FNILCVGETG+GKSTLM+TLFNT FE E A+H
Sbjct: 17 RSLSLGGHVGFDSLPDQLVSKSVTQGFSFNILCVGETGIGKSTLMNTLFNTTFETEEASH 76
Query: 324 TQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEEL 503
+ V+LR TYDLQESNV LKLTIV VGFGDQINK++SY+PIV++IDAQFE YLQEEL
Sbjct: 77 HEECVRLRPQTYDLQESNVQLKLTIVDAVGFGDQINKDESYRPIVDYIDAQFENYLQEEL 136
Query: 504 KIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSEL 683
KIRR L YHD+RIH CLYFI PTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D ISKSEL
Sbjct: 137 KIRRSLFDYHDTRIHVCLYFITPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTISKSEL 196
Query: 684 TKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMKAR 863
KFKIKI ELVSNGVQIYQFPTDDE+VAEIN MNAHLPFAV+GSTEE+K+GNK+++AR
Sbjct: 197 HKFKIKIMGELVSNGVQIYQFPTDDEAVAEINAVMNAHLPFAVVGSTEEVKVGNKLVRAR 256
Query: 864 QYPWGTGRVE 893
QYPWG +VE
Sbjct: 257 QYPWGVVQVE 266
>ref|NP_001039641.1| septin-10 [Bos taurus].
Length = 453
Score = 400 bits (1029), Expect = e-112
Identities = 188/250 (75%), Positives = 227/250 (90%)
Frame = +3
Query: 144 RTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATH 323
R++ ++GHVGF+SLPDQLVN+S+ QGFCFNILCVGETG+GKSTL+DTLFNT FE ++H
Sbjct: 38 RSLTMSGHVGFESLPDQLVNRSIQQGFCFNILCVGETGIGKSTLIDTLFNTNFEDHESSH 97
Query: 324 TQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEEL 503
P V+L++ TY+LQESNV LKLTIV+TVGFGDQINKE+SY+PIV++IDAQFEAYLQEEL
Sbjct: 98 FYPHVRLKAQTYELQESNVRLKLTIVNTVGFGDQINKEESYQPIVDYIDAQFEAYLQEEL 157
Query: 504 KIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSEL 683
KI+R L YHDSR+H CLYFI+PTGHSLK+LDL+TMK LDSKVNIIP+IAK+DAISK+EL
Sbjct: 158 KIKRSLFNYHDSRVHVCLYFISPTGHSLKTLDLLTMKSLDSKVNIIPVIAKADAISKTEL 217
Query: 684 TKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMKAR 863
KFKIK+ SELVSNGVQIYQFPTDDE++A+IN +MN HLPFAV+GS +E+K+GNKM+KAR
Sbjct: 218 QKFKIKLMSELVSNGVQIYQFPTDDETIAKINASMNGHLPFAVVGSMDEVKVGNKMVKAR 277
Query: 864 QYPWGTGRVE 893
QYPWG +VE
Sbjct: 278 QYPWGVVQVE 287
>ref|NP_001095557.1| septin-14 [Bos taurus].
Length = 432
Score = 342 bits (878), Expect = 2e-94
Identities = 163/256 (63%), Positives = 207/256 (80%)
Frame = +3
Query: 126 QVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE 305
Q + R + + GH GFD L QLV+KSV QGF FNILCVGETG+GKSTL+DTLFNT +
Sbjct: 19 QKEDNIRCLNMLGHFGFDCLAHQLVDKSVQQGFFFNILCVGETGIGKSTLIDTLFNTSLK 78
Query: 306 GEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEA 485
+ ++H V L+ TY+LQE+NV LKLT+V TVG+GDQINKE SY+PIV+++DAQFE+
Sbjct: 79 DKKSSHFYASVGLKIQTYELQENNVQLKLTVVKTVGYGDQINKEASYQPIVDYLDAQFES 138
Query: 486 YLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDA 665
YLQEELKI+R L Y DSR+H CLYFI+PTGHSLKSLD++TMK +DSKVNIIP+IAK+DA
Sbjct: 139 YLQEELKIKRSLGNYRDSRVHVCLYFISPTGHSLKSLDILTMKNIDSKVNIIPVIAKADA 198
Query: 666 ISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGN 845
ISKS+L FK I +EL+SNG+Q+YQFPTD+E+ +N +MN LPFAV+GSTEE+K+G
Sbjct: 199 ISKSDLQTFKCAIMNELISNGIQMYQFPTDNETSTHMNSSMNGLLPFAVVGSTEEVKVGK 258
Query: 846 KMMKARQYPWGTGRVE 893
+ ++ RQYPWG +VE
Sbjct: 259 RTVRGRQYPWGILQVE 274
>ref|XP_002696247.1| PREDICTED: OVARIAN/Breast septin gamma-like [Bos taurus].
Length = 686
Score = 215 bits (547), Expect = 6e-56
Identities = 109/251 (43%), Positives = 164/251 (65%), Gaps = 7/251 (2%)
Frame = +3
Query: 162 GHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPG-- 335
G+VG DS+ +Q+ K++ QGF FNI+ VG++GLGKSTL++TLF +K + T
Sbjct: 377 GYVGIDSILEQMRRKAMKQGFEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERI 436
Query: 336 ---VQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELK 506
++++S T+D++E V +KLT++ T GFGD IN E+ ++PI++FI+ Q+E YLQEE+
Sbjct: 437 PKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMQFINDQYEKYLQEEVN 496
Query: 507 IRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSELT 686
I R D+R+H CLYFI TGHSL+ LD+ MK+L VNI+P+IAK+D ++ E
Sbjct: 497 INRKKRI-PDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERV 555
Query: 687 KFKIKITSELVSNGVQIYQFPTDDESVAE--INGTMNAHLPFAVIGSTEELKIGNKMMKA 860
FK +IT++L+SNG+ +Y DE + +N +PFAV+GS E ++ K +
Sbjct: 556 YFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGSDHEYQVNGKRILG 615
Query: 861 RQYPWGTGRVE 893
R+ WGT VE
Sbjct: 616 RKTKWGTIEVE 626
>ref|XP_001790165.2| PREDICTED: septin 9 [Bos taurus].
Length = 686
Score = 215 bits (547), Expect = 6e-56
Identities = 109/251 (43%), Positives = 164/251 (65%), Gaps = 7/251 (2%)
Frame = +3
Query: 162 GHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPG-- 335
G+VG DS+ +Q+ K++ QGF FNI+ VG++GLGKSTL++TLF +K + T
Sbjct: 377 GYVGIDSILEQMRRKAMKQGFEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERI 436
Query: 336 ---VQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELK 506
++++S T+D++E V +KLT++ T GFGD IN E+ ++PI++FI+ Q+E YLQEE+
Sbjct: 437 PKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMQFINDQYEKYLQEEVN 496
Query: 507 IRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSELT 686
I R D+R+H CLYFI TGHSL+ LD+ MK+L VNI+P+IAK+D ++ E
Sbjct: 497 INRKKRI-PDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERV 555
Query: 687 KFKIKITSELVSNGVQIYQFPTDDESVAE--INGTMNAHLPFAVIGSTEELKIGNKMMKA 860
FK +IT++L+SNG+ +Y DE + +N +PFAV+GS E ++ K +
Sbjct: 556 YFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGSDHEYQVNGKRILG 615
Query: 861 RQYPWGTGRVE 893
R+ WGT VE
Sbjct: 616 RKTKWGTIEVE 626
>ref|NP_001001168.1| septin-7 [Bos taurus].
Length = 418
Score = 210 bits (534), Expect = 2e-54
Identities = 107/251 (42%), Positives = 162/251 (64%), Gaps = 5/251 (1%)
Frame = +3
Query: 156 LAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE----PATH 323
L G+VGF +LP+Q+ KSV +GF F ++ VGE+GLGKSTL+++LF T P+
Sbjct: 8 LEGYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHR 67
Query: 324 TQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEEL 503
+ VQ+ + ++E V L LTIV T GFGD ++ + ++P++++ID++FE YL E
Sbjct: 68 IKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAES 127
Query: 504 KIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSEL 683
++ R D+R+ CLYFIAP+GH LK LD+ MK+L KVNIIP+IAK+D ++ E
Sbjct: 128 RVNR--RQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEEC 185
Query: 684 TKFKIKITSELVSNGVQIYQFP-TDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMKA 860
+FK +I E+ + ++IY+FP TDDE ++ + LP AV+GS +++ K ++
Sbjct: 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRG 245
Query: 861 RQYPWGTGRVE 893
RQYPWG VE
Sbjct: 246 RQYPWGVAEVE 256
>ref|NP_001070417.1| neuronal-specific septin-3 [Bos taurus].
Length = 357
Score = 201 bits (510), Expect = 1e-51
Identities = 104/254 (40%), Positives = 166/254 (65%), Gaps = 8/254 (3%)
Frame = +3
Query: 156 LAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPG 335
L G++G D++ +Q+ K++ GF FNI+ VG++GLGKSTL++TLF ++ + ++ +
Sbjct: 38 LLGYIGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREE 97
Query: 336 -----VQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEE 500
V++++ + ++E V +KLT++ T GFGDQIN E+ ++PI ++I+ Q+E +L+EE
Sbjct: 98 KIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEE 157
Query: 501 LKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSE 680
+ I R D+R+H CLYFI+PTGHSL+ LDL MK L VNIIP+IAK+D ++ E
Sbjct: 158 VNIARKKRI-PDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTLEE 216
Query: 681 LTKFKIKITSELVSNGVQIY---QFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKM 851
++FK ++ EL NG++ Y +F D E E N + +PFAV+GS +E ++ K
Sbjct: 217 KSEFKQRVRKELEVNGIEFYPQKEFDEDLEDKTE-NDKIRESMPFAVVGSDKEYQVNGKR 275
Query: 852 MKARQYPWGTGRVE 893
+ R+ PWG VE
Sbjct: 276 VLGRKTPWGIIEVE 289
>ref|NP_001039557.1| septin-2 [Bos taurus].
Length = 361
Score = 200 bits (508), Expect = 2e-51
Identities = 104/253 (41%), Positives = 157/253 (62%), Gaps = 9/253 (3%)
Frame = +3
Query: 162 GHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE-----PATHT 326
G+VGF +LP+Q+ KSV +GF F ++ VGE+GLGKSTL+++LF T E A
Sbjct: 16 GYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKI 75
Query: 327 QPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELK 506
+ VQ+ ++T +++E V L+LT+V T G+GD IN D +K I+ +ID QFE YL +E
Sbjct: 76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIICYIDEQFERYLHDESG 135
Query: 507 IRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSELT 686
+ R D+R+H C YFI+P GH LK LD+ MK + +KVNI+P+IAK+D ++ E
Sbjct: 136 LNR--RHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERE 193
Query: 687 KFKIKITSELVSNGVQIYQFP----TDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMM 854
+ K +I E+ + ++IY P +DE E + A +PF+V+GS + ++ K +
Sbjct: 194 RLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKV 253
Query: 855 KARQYPWGTGRVE 893
+ R YPWG VE
Sbjct: 254 RGRLYPWGVVEVE 266
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,756,127
Number of extensions: 1131517
Number of successful extensions: 3998
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3960
Number of HSP's successfully gapped: 14
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013457
(1038 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360479.1| PREDICTED: septin-6-like [Sus scrofa]. 510 e-145
Alignment gi|XP_003135394.1| PREDICTED: septin-6-like isoform 3 [Sus scro... 510 e-145
Alignment gi|XP_003135392.1| PREDICTED: septin-6-like isoform 1 [Sus scro... 510 e-145
Alignment gi|XP_003135393.1| PREDICTED: septin-6-like isoform 2 [Sus scro... 510 e-145
Alignment gi|XP_003129144.1| PREDICTED: septin-11 [Sus scrofa]. 427 e-120
Alignment gi|XP_003123974.1| PREDICTED: septin-8 [Sus scrofa]. 402 e-112
Alignment gi|XP_003124877.2| PREDICTED: septin-10-like [Sus scrofa]. 349 2e-96
Alignment gi|XP_003124499.2| PREDICTED: septin-14-like [Sus scrofa]. 236 1e-62
Alignment gi|XP_003357996.1| PREDICTED: septin-9-like [Sus scrofa]. 213 1e-55
Alignment gi|XP_003360219.1| PREDICTED: septin-7-like [Sus scrofa]. 210 1e-54
>ref|XP_003360479.1| PREDICTED: septin-6-like [Sus scrofa].
Length = 427
Score = 510 bits (1313), Expect = e-145
Identities = 255/257 (99%), Positives = 256/257 (99%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMMKARQYPWGT +VE
Sbjct: 248 NKMMKARQYPWGTVQVE 264
>ref|XP_003135394.1| PREDICTED: septin-6-like isoform 3 [Sus scrofa].
Length = 427
Score = 510 bits (1313), Expect = e-145
Identities = 255/257 (99%), Positives = 256/257 (99%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMMKARQYPWGT +VE
Sbjct: 248 NKMMKARQYPWGTVQVE 264
>ref|XP_003135392.1| PREDICTED: septin-6-like isoform 1 [Sus scrofa].
Length = 427
Score = 510 bits (1313), Expect = e-145
Identities = 255/257 (99%), Positives = 256/257 (99%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMMKARQYPWGT +VE
Sbjct: 248 NKMMKARQYPWGTVQVE 264
>ref|XP_003135393.1| PREDICTED: septin-6-like isoform 2 [Sus scrofa].
Length = 429
Score = 510 bits (1313), Expect = e-145
Identities = 255/257 (99%), Positives = 256/257 (99%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMMKARQYPWGT +VE
Sbjct: 248 NKMMKARQYPWGTVQVE 264
>ref|XP_003129144.1| PREDICTED: septin-11 [Sus scrofa].
Length = 429
Score = 427 bits (1098), Expect = e-120
Identities = 209/257 (81%), Positives = 232/257 (90%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
R E R + L+GHVGFDSLPDQLVNKS SQGFCFNILCVGETG+GKSTLMDTLFNTKF
Sbjct: 7 RPSNEELRNLSLSGHVGFDSLPDQLVNKSTSQGFCFNILCVGETGIGKSTLMDTLFNTKF 66
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
E +PATH +PGV+L++ +Y+LQESNV LKLTIV TVGFGDQINK+DSYKPIVE+IDAQFE
Sbjct: 67 ESDPATHNEPGVRLKARSYELQESNVRLKLTIVDTVGFGDQINKDDSYKPIVEYIDAQFE 126
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKI+R L YHD+RIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D
Sbjct: 127 AYLQEELKIKRSLFNYHDTRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKAD 186
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
I+K+EL KFK KI SELVSNGVQIYQFPTD+E+VAEIN TM+ HLPFAV+GSTEE+KIG
Sbjct: 187 TIAKNELHKFKSKIMSELVSNGVQIYQFPTDEETVAEINATMSVHLPFAVVGSTEEVKIG 246
Query: 843 NKMMKARQYPWGTGRVE 893
NKM KARQYPWG +VE
Sbjct: 247 NKMAKARQYPWGVVQVE 263
>ref|XP_003123974.1| PREDICTED: septin-8 [Sus scrofa].
Length = 483
Score = 402 bits (1032), Expect = e-112
Identities = 198/250 (79%), Positives = 222/250 (88%)
Frame = +3
Query: 144 RTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATH 323
R++ L GHVGFDSLPDQLV+KSV+QGF FNILCVGETG+GKSTLM+TLFNT FE E A+H
Sbjct: 17 RSLSLGGHVGFDSLPDQLVSKSVTQGFSFNILCVGETGIGKSTLMNTLFNTTFETEEASH 76
Query: 324 TQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEEL 503
+ V+LR TYDLQESNV LKLTIV VGFGDQINK++SY+PIV++IDAQFE YLQEEL
Sbjct: 77 HEECVRLRPQTYDLQESNVQLKLTIVDAVGFGDQINKDESYRPIVDYIDAQFENYLQEEL 136
Query: 504 KIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSEL 683
KIRR L YHD+RIH CLYFI PTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D ISKSEL
Sbjct: 137 KIRRSLFDYHDTRIHVCLYFITPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTISKSEL 196
Query: 684 TKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMKAR 863
KFKIKI ELVSNGVQIYQFPTDDE+VAEIN MNAHLPFAV+GSTEE+K+GNK+++AR
Sbjct: 197 HKFKIKIMGELVSNGVQIYQFPTDDEAVAEINAVMNAHLPFAVVGSTEEVKVGNKLVRAR 256
Query: 864 QYPWGTGRVE 893
QYPWG +VE
Sbjct: 257 QYPWGVVQVE 266
>ref|XP_003124877.2| PREDICTED: septin-10-like [Sus scrofa].
Length = 320
Score = 349 bits (895), Expect = 2e-96
Identities = 167/223 (74%), Positives = 200/223 (89%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
+Q E R++ ++GHVGF+SLPDQLVN+S+ QGFCFNILCVGE+G+GKSTL+DTLFNT F
Sbjct: 95 KQKKENTRSLTMSGHVGFESLPDQLVNRSIQQGFCFNILCVGESGIGKSTLIDTLFNTNF 154
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
E ++H P V+L++ TYDLQESNV LKLTIV+TVGFGDQINKE+SY+PIV++IDAQFE
Sbjct: 155 EDHESSHFYPHVRLKAQTYDLQESNVRLKLTIVNTVGFGDQINKEESYQPIVDYIDAQFE 214
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKI+R L YHDSRIH CLYFI+PTGHSLK+LDL+TMK LDSKVNIIP+IAK+D
Sbjct: 215 AYLQEELKIQRSLFNYHDSRIHVCLYFISPTGHSLKTLDLLTMKSLDSKVNIIPVIAKAD 274
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMN 791
AISK+EL KFKIK+ SELVSNGVQIYQFPTDDE++A+IN +MN
Sbjct: 275 AISKTELQKFKIKLMSELVSNGVQIYQFPTDDETIAKINASMN 317
>ref|XP_003124499.2| PREDICTED: septin-14-like [Sus scrofa].
Length = 197
Score = 236 bits (603), Expect = 1e-62
Identities = 113/166 (68%), Positives = 136/166 (81%)
Frame = +3
Query: 135 EGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEP 314
+ R + + GH GFD LP QLVNKSV QGF FNILCVGETG+GKSTL+DTLFNT + +
Sbjct: 22 DNIRCLTMLGHFGFDCLPHQLVNKSVQQGFFFNILCVGETGIGKSTLIDTLFNTNLKDKK 81
Query: 315 ATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQ 494
++H V L+ TY+LQES+V LKLT+V TVG+GDQINKE SY+PIV++IDAQFE+YLQ
Sbjct: 82 SSHFYSNVGLKIQTYELQESSVQLKLTVVKTVGYGDQINKESSYQPIVDYIDAQFESYLQ 141
Query: 495 EELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKV 632
EELKI+R YHDSRIH CLYFI+PTGHSLKSLDL+TMK +D+KV
Sbjct: 142 EELKIKRCFADYHDSRIHVCLYFISPTGHSLKSLDLLTMKNIDTKV 187
>ref|XP_003357996.1| PREDICTED: septin-9-like [Sus scrofa].
Length = 646
Score = 213 bits (542), Expect = 1e-55
Identities = 109/251 (43%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Frame = +3
Query: 162 GHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE----PATHTQ 329
G+VG DS+ +Q+ K++ QGF FNI+ VG++GLGKSTL++TLF +K + P+
Sbjct: 337 GYVGIDSILEQMRRKAMKQGFEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPPSEERI 396
Query: 330 PG-VQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELK 506
P ++++S T+D++E V +KLT++ T GFGD IN E+ ++PI++FI+ Q+E YLQEE+
Sbjct: 397 PKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVN 456
Query: 507 IRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSELT 686
I R D+R+H CLYFI TGH+L+ LD+ MK+L VNI+P+IAK+D ++ E
Sbjct: 457 INRKKRI-PDTRVHCCLYFIPATGHALRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERV 515
Query: 687 KFKIKITSELVSNGVQIYQFPTDDESVAE--INGTMNAHLPFAVIGSTEELKIGNKMMKA 860
FK +IT++L+SNG+ +Y DE + +N +PFAV+GS E ++ K +
Sbjct: 516 YFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGSDHEYQVNGKRILG 575
Query: 861 RQYPWGTGRVE 893
R+ WGT VE
Sbjct: 576 RKTKWGTIEVE 586
>ref|XP_003360219.1| PREDICTED: septin-7-like [Sus scrofa].
Length = 436
Score = 210 bits (534), Expect = 1e-54
Identities = 107/251 (42%), Positives = 162/251 (64%), Gaps = 5/251 (1%)
Frame = +3
Query: 156 LAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE----PATH 323
L G+VGF +LP+Q+ KSV +GF F ++ VGE+GLGKSTL+++LF T P+
Sbjct: 26 LEGYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHR 85
Query: 324 TQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEEL 503
+ VQ+ + ++E V L LTIV T GFGD ++ + ++P++++ID++FE YL E
Sbjct: 86 IKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAES 145
Query: 504 KIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSEL 683
++ R D+R+ CLYFIAP+GH LK LD+ MK+L KVNIIP+IAK+D ++ E
Sbjct: 146 RVNR--RQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEEC 203
Query: 684 TKFKIKITSELVSNGVQIYQFP-TDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMKA 860
+FK +I E+ + ++IY+FP TDDE ++ + LP AV+GS +++ K ++
Sbjct: 204 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRG 263
Query: 861 RQYPWGTGRVE 893
RQYPWG VE
Sbjct: 264 RQYPWGVAEVE 274
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,659,653
Number of extensions: 728707
Number of successful extensions: 2541
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 2492
Number of HSP's successfully gapped: 24
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013457
(1038 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001170795.1| septin-6 isoform 1 [Mus musculus]. 496 e-141
Alignment gi|NP_064326.2| septin-6 isoform 2 [Mus musculus]. 496 e-141
Alignment gi|NP_001170794.1| septin-6 isoform 3 [Mus musculus]. 491 e-139
Alignment gi|NP_001009818.1| septin-11 [Mus musculus]. 427 e-120
Alignment gi|NP_149156.1| septin-8 [Mus musculus]. 403 e-112
Alignment gi|NP_001020081.2| septin-10 isoform 1 [Mus musculus]. 387 e-107
Alignment gi|NP_001020082.1| septin-10 isoform 2 [Mus musculus]. 387 e-107
Alignment gi|NP_083102.1| septin-14 [Mus musculus]. 321 7e-88
Alignment gi|NP_001106960.1| septin-9 isoform c [Mus musculus]. 215 4e-56
Alignment gi|NP_001106959.1| septin-9 isoform b [Mus musculus]. 215 4e-56
>ref|NP_001170795.1| septin-6 isoform 1 [Mus musculus].
Length = 434
Score = 496 bits (1278), Expect = e-141
Identities = 245/257 (95%), Positives = 253/257 (98%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGE CRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEDCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQL+SNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLQSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLH+YHDSRIH CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIP+IAKSD
Sbjct: 128 AYLQEELKIRRVLHSYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPVIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSEL KFKIKITSELVSNGVQIYQFPTDDESV+EINGTMNAHLPFAV+GSTEE+KIG
Sbjct: 188 AISKSELAKFKIKITSELVSNGVQIYQFPTDDESVSEINGTMNAHLPFAVVGSTEEVKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMM+ARQYPWGT +VE
Sbjct: 248 NKMMRARQYPWGTVQVE 264
>ref|NP_064326.2| septin-6 isoform 2 [Mus musculus].
Length = 429
Score = 496 bits (1278), Expect = e-141
Identities = 245/257 (95%), Positives = 253/257 (98%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGE CRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEDCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQL+SNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLQSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLH+YHDSRIH CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIP+IAKSD
Sbjct: 128 AYLQEELKIRRVLHSYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPVIAKSD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSEL KFKIKITSELVSNGVQIYQFPTDDESV+EINGTMNAHLPFAV+GSTEE+KIG
Sbjct: 188 AISKSELAKFKIKITSELVSNGVQIYQFPTDDESVSEINGTMNAHLPFAVVGSTEEVKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMM+ARQYPWGT +VE
Sbjct: 248 NKMMRARQYPWGTVQVE 264
>ref|NP_001170794.1| septin-6 isoform 3 [Mus musculus].
Length = 428
Score = 491 bits (1264), Expect = e-139
Identities = 242/254 (95%), Positives = 250/254 (98%)
Frame = +3
Query: 132 GEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE 311
GE CRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE
Sbjct: 10 GEDCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE 69
Query: 312 PATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYL 491
PATHTQPGVQL+SNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYL
Sbjct: 70 PATHTQPGVQLQSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYL 129
Query: 492 QEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAIS 671
QEELKIRRVLH+YHDSRIH CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIP+IAKSDAIS
Sbjct: 130 QEELKIRRVLHSYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPVIAKSDAIS 189
Query: 672 KSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKM 851
KSEL KFKIKITSELVSNGVQIYQFPTDDESV+EINGTMNAHLPFAV+GSTEE+KIGNKM
Sbjct: 190 KSELAKFKIKITSELVSNGVQIYQFPTDDESVSEINGTMNAHLPFAVVGSTEEVKIGNKM 249
Query: 852 MKARQYPWGTGRVE 893
M+ARQYPWGT +VE
Sbjct: 250 MRARQYPWGTVQVE 263
>ref|NP_001009818.1| septin-11 [Mus musculus].
Length = 429
Score = 427 bits (1098), Expect = e-120
Identities = 209/257 (81%), Positives = 232/257 (90%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
R E R + L+GHVGFDSLPDQLVNKS SQGFCFNILCVGETG+GKSTLMDTLFNTKF
Sbjct: 7 RPSNEELRNLSLSGHVGFDSLPDQLVNKSTSQGFCFNILCVGETGIGKSTLMDTLFNTKF 66
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
E +PATH +PGV+L++ +Y+LQESNV LKLTIV TVGFGDQINK+DSYKPIVE+IDAQFE
Sbjct: 67 ESDPATHNEPGVRLKARSYELQESNVRLKLTIVDTVGFGDQINKDDSYKPIVEYIDAQFE 126
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKI+R L YHD+RIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D
Sbjct: 127 AYLQEELKIKRSLFNYHDTRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKAD 186
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
I+K+EL KFK KI SELVSNGVQIYQFPTD+E+VAEIN TM+ HLPFAV+GSTEE+KIG
Sbjct: 187 TIAKNELHKFKSKIMSELVSNGVQIYQFPTDEETVAEINATMSVHLPFAVVGSTEEVKIG 246
Query: 843 NKMMKARQYPWGTGRVE 893
NKM KARQYPWG +VE
Sbjct: 247 NKMAKARQYPWGVVQVE 263
>ref|NP_149156.1| septin-8 [Mus musculus].
Length = 430
Score = 403 bits (1036), Expect = e-112
Identities = 199/250 (79%), Positives = 222/250 (88%)
Frame = +3
Query: 144 RTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATH 323
R++ L GHVGFDSLPDQLV+KSV+QGF FNILCVGETG+GKSTLM+TLFNT FE E A+H
Sbjct: 17 RSLSLGGHVGFDSLPDQLVSKSVTQGFSFNILCVGETGIGKSTLMNTLFNTTFETEEASH 76
Query: 324 TQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEEL 503
+ V+LR TYDLQESNV LKLTIV VGFGDQINK+DSY+PIV++IDAQFE YLQEEL
Sbjct: 77 HEECVRLRPQTYDLQESNVHLKLTIVDAVGFGDQINKDDSYRPIVDYIDAQFENYLQEEL 136
Query: 504 KIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSEL 683
KIRR L YHD+RIH CLYFI PTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D ISKSEL
Sbjct: 137 KIRRSLFDYHDTRIHVCLYFITPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTISKSEL 196
Query: 684 TKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMKAR 863
KFKIKI ELVSNGVQIYQFPTDDE+VAEIN MNAHLPFAV+GSTEE+K+GNK+++AR
Sbjct: 197 HKFKIKIMGELVSNGVQIYQFPTDDEAVAEINAVMNAHLPFAVVGSTEEVKVGNKLVRAR 256
Query: 864 QYPWGTGRVE 893
QYPWG +VE
Sbjct: 257 QYPWGVVQVE 266
>ref|NP_001020081.2| septin-10 isoform 1 [Mus musculus].
Length = 452
Score = 387 bits (993), Expect = e-107
Identities = 183/256 (71%), Positives = 224/256 (87%)
Frame = +3
Query: 126 QVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE 305
++ E R++ + GHVGF+SLPDQLV++S+ QGFCFNILCVGETG+GKSTL++TLFNT FE
Sbjct: 6 EIKEHPRSLSMCGHVGFESLPDQLVDRSIEQGFCFNILCVGETGIGKSTLINTLFNTNFE 65
Query: 306 GEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEA 485
++H P V+LR+ TY+LQESNV LKLTIV+TVGFGDQINKEDSY+PIV++ID QFEA
Sbjct: 66 ELESSHFCPCVRLRAQTYELQESNVRLKLTIVNTVGFGDQINKEDSYQPIVDYIDDQFEA 125
Query: 486 YLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDA 665
YLQEELKI+R L YHDSRIH CLYFIAPTGHSL++LDL+TMK LD+KVNIIP+IAK+D
Sbjct: 126 YLQEELKIKRALFNYHDSRIHVCLYFIAPTGHSLRTLDLLTMKSLDNKVNIIPLIAKADT 185
Query: 666 ISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGN 845
ISKSEL KFK+K+ +ELV NGVQIYQFPTDD++ ++ING MN HLPFAV+GS +E+K+GN
Sbjct: 186 ISKSELQKFKMKLMNELVINGVQIYQFPTDDDTTSKINGAMNGHLPFAVVGSMDEIKVGN 245
Query: 846 KMMKARQYPWGTGRVE 893
KM+K RQYPWG +VE
Sbjct: 246 KMVKGRQYPWGIVQVE 261
>ref|NP_001020082.1| septin-10 isoform 2 [Mus musculus].
Length = 427
Score = 387 bits (993), Expect = e-107
Identities = 183/256 (71%), Positives = 224/256 (87%)
Frame = +3
Query: 126 QVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE 305
++ E R++ + GHVGF+SLPDQLV++S+ QGFCFNILCVGETG+GKSTL++TLFNT FE
Sbjct: 6 EIKEHPRSLSMCGHVGFESLPDQLVDRSIEQGFCFNILCVGETGIGKSTLINTLFNTNFE 65
Query: 306 GEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEA 485
++H P V+LR+ TY+LQESNV LKLTIV+TVGFGDQINKEDSY+PIV++ID QFEA
Sbjct: 66 ELESSHFCPCVRLRAQTYELQESNVRLKLTIVNTVGFGDQINKEDSYQPIVDYIDDQFEA 125
Query: 486 YLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDA 665
YLQEELKI+R L YHDSRIH CLYFIAPTGHSL++LDL+TMK LD+KVNIIP+IAK+D
Sbjct: 126 YLQEELKIKRALFNYHDSRIHVCLYFIAPTGHSLRTLDLLTMKSLDNKVNIIPLIAKADT 185
Query: 666 ISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGN 845
ISKSEL KFK+K+ +ELV NGVQIYQFPTDD++ ++ING MN HLPFAV+GS +E+K+GN
Sbjct: 186 ISKSELQKFKMKLMNELVINGVQIYQFPTDDDTTSKINGAMNGHLPFAVVGSMDEIKVGN 245
Query: 846 KMMKARQYPWGTGRVE 893
KM+K RQYPWG +VE
Sbjct: 246 KMVKGRQYPWGIVQVE 261
>ref|NP_083102.1| septin-14 [Mus musculus].
Length = 429
Score = 321 bits (822), Expect = 7e-88
Identities = 154/253 (60%), Positives = 198/253 (78%)
Frame = +3
Query: 135 EGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEP 314
E R + GH GF+ LP QLVNKS+ +GF FNILCVGETG+GK+TL++TLFNT +
Sbjct: 21 ENIRCLSTLGHFGFECLPTQLVNKSIQKGFSFNILCVGETGIGKTTLINTLFNTNLKETK 80
Query: 315 ATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQ 494
++H V L TY+L E N+ L+LT+V TVG+GDQINKE SY+P+V+++DAQFEAYLQ
Sbjct: 81 SSHFYSKVGLTVKTYELLERNIPLRLTVVKTVGYGDQINKEASYQPVVDYLDAQFEAYLQ 140
Query: 495 EELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISK 674
EELKI+R L YHDSRIH CLYFI PTGHSLKSLDL+TMK +D +VNIIP+IAK+D++SK
Sbjct: 141 EELKIKRSLADYHDSRIHVCLYFITPTGHSLKSLDLLTMKSIDRRVNIIPLIAKADSLSK 200
Query: 675 SELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMM 854
++L +FK I SEL SNG+QIYQF DDE+ A++N + LPFAV+GS EE+K+G +M+
Sbjct: 201 NDLQRFKNNIMSELNSNGIQIYQFQVDDEASAQVNS--SGLLPFAVVGSMEEVKVGKRMV 258
Query: 855 KARQYPWGTGRVE 893
+ R YPWG +VE
Sbjct: 259 RGRHYPWGVLQVE 271
>ref|NP_001106960.1| septin-9 isoform c [Mus musculus].
Length = 334
Score = 215 bits (548), Expect = 4e-56
Identities = 109/251 (43%), Positives = 164/251 (65%), Gaps = 7/251 (2%)
Frame = +3
Query: 162 GHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPG-- 335
G+VG DS+ +Q+ K++ QGF FNI+ VG++GLGKSTL++TLF +K + T
Sbjct: 26 GYVGIDSILEQMRRKAMKQGFEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERI 85
Query: 336 ---VQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELK 506
++++S T+D++E V +KLT++ T GFGD IN E+ ++PI++FI+ Q+E YLQEE+
Sbjct: 86 PKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVN 145
Query: 507 IRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSELT 686
I R D+R+H CLYFI TGHSL+ LD+ MK+L VNI+P+IAK+D ++ E
Sbjct: 146 INRKKRI-PDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERV 204
Query: 687 KFKIKITSELVSNGVQIYQFPTDDESVAE--INGTMNAHLPFAVIGSTEELKIGNKMMKA 860
FK +IT++L+SNG+ +Y DE + +N +PFAV+GS E ++ K +
Sbjct: 205 YFKQRITADLLSNGIDVYPQKEFDEDAEDRLVNEKFREMIPFAVVGSDHEYQVNGKRILG 264
Query: 861 RQYPWGTGRVE 893
R+ WGT VE
Sbjct: 265 RKTKWGTIEVE 275
>ref|NP_001106959.1| septin-9 isoform b [Mus musculus].
Length = 576
Score = 215 bits (548), Expect = 4e-56
Identities = 109/251 (43%), Positives = 164/251 (65%), Gaps = 7/251 (2%)
Frame = +3
Query: 162 GHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPG-- 335
G+VG DS+ +Q+ K++ QGF FNI+ VG++GLGKSTL++TLF +K + T
Sbjct: 268 GYVGIDSILEQMRRKAMKQGFEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERI 327
Query: 336 ---VQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELK 506
++++S T+D++E V +KLT++ T GFGD IN E+ ++PI++FI+ Q+E YLQEE+
Sbjct: 328 PKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVN 387
Query: 507 IRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSELT 686
I R D+R+H CLYFI TGHSL+ LD+ MK+L VNI+P+IAK+D ++ E
Sbjct: 388 INRKKRI-PDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERV 446
Query: 687 KFKIKITSELVSNGVQIYQFPTDDESVAE--INGTMNAHLPFAVIGSTEELKIGNKMMKA 860
FK +IT++L+SNG+ +Y DE + +N +PFAV+GS E ++ K +
Sbjct: 447 YFKQRITADLLSNGIDVYPQKEFDEDAEDRLVNEKFREMIPFAVVGSDHEYQVNGKRILG 506
Query: 861 RQYPWGTGRVE 893
R+ WGT VE
Sbjct: 507 RKTKWGTIEVE 517
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,347,669
Number of extensions: 950349
Number of successful extensions: 3450
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 3384
Number of HSP's successfully gapped: 24
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013457
(1038 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055944.2| septin-6 isoform B [Homo sapiens]. 501 e-142
Alignment gi|NP_665801.1| septin-6 isoform D [Homo sapiens]. 501 e-142
Alignment gi|NP_665799.1| septin-6 isoform A [Homo sapiens]. 501 e-142
Alignment gi|NP_665798.1| septin-6 isoform A [Homo sapiens]. 501 e-142
Alignment gi|NP_060713.1| septin-11 [Homo sapiens]. 427 e-120
Alignment gi|NP_001092282.1| septin-8 isoform c [Homo sapiens]. 402 e-112
Alignment gi|NP_001092281.1| septin-8 isoform a [Homo sapiens]. 402 e-112
Alignment gi|NP_055961.1| septin-8 isoform b [Homo sapiens]. 402 e-112
Alignment gi|NP_848699.1| septin-10 isoform 2 [Homo sapiens]. 397 e-110
Alignment gi|NP_653311.1| septin-10 isoform 1 [Homo sapiens]. 397 e-110
>ref|NP_055944.2| septin-6 isoform B [Homo sapiens].
Length = 434
Score = 501 bits (1291), Expect = e-142
Identities = 250/257 (97%), Positives = 254/257 (98%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQL+SNTYDLQESNV LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIH CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKAD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMM+ARQYPWGT +VE
Sbjct: 248 NKMMRARQYPWGTVQVE 264
>ref|NP_665801.1| septin-6 isoform D [Homo sapiens].
Length = 429
Score = 501 bits (1291), Expect = e-142
Identities = 250/257 (97%), Positives = 254/257 (98%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQL+SNTYDLQESNV LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIH CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKAD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMM+ARQYPWGT +VE
Sbjct: 248 NKMMRARQYPWGTVQVE 264
>ref|NP_665799.1| septin-6 isoform A [Homo sapiens].
Length = 427
Score = 501 bits (1291), Expect = e-142
Identities = 250/257 (97%), Positives = 254/257 (98%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQL+SNTYDLQESNV LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIH CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKAD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMM+ARQYPWGT +VE
Sbjct: 248 NKMMRARQYPWGTVQVE 264
>ref|NP_665798.1| septin-6 isoform A [Homo sapiens].
Length = 427
Score = 501 bits (1291), Expect = e-142
Identities = 250/257 (97%), Positives = 254/257 (98%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF
Sbjct: 8 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
EGEPATHTQPGVQL+SNTYDLQESNV LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE
Sbjct: 68 EGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKIRRVLHTYHDSRIH CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D
Sbjct: 128 AYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKAD 187
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG
Sbjct: 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 247
Query: 843 NKMMKARQYPWGTGRVE 893
NKMM+ARQYPWGT +VE
Sbjct: 248 NKMMRARQYPWGTVQVE 264
>ref|NP_060713.1| septin-11 [Homo sapiens].
Length = 429
Score = 427 bits (1098), Expect = e-120
Identities = 209/257 (81%), Positives = 232/257 (90%)
Frame = +3
Query: 123 RQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 302
R E R + L+GHVGFDSLPDQLVNKS SQGFCFNILCVGETG+GKSTLMDTLFNTKF
Sbjct: 7 RPSNEELRNLSLSGHVGFDSLPDQLVNKSTSQGFCFNILCVGETGIGKSTLMDTLFNTKF 66
Query: 303 EGEPATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 482
E +PATH +PGV+L++ +Y+LQESNV LKLTIV TVGFGDQINK+DSYKPIVE+IDAQFE
Sbjct: 67 ESDPATHNEPGVRLKARSYELQESNVRLKLTIVDTVGFGDQINKDDSYKPIVEYIDAQFE 126
Query: 483 AYLQEELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSD 662
AYLQEELKI+R L YHD+RIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D
Sbjct: 127 AYLQEELKIKRSLFNYHDTRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKAD 186
Query: 663 AISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIG 842
I+K+EL KFK KI SELVSNGVQIYQFPTD+E+VAEIN TM+ HLPFAV+GSTEE+KIG
Sbjct: 187 TIAKNELHKFKSKIMSELVSNGVQIYQFPTDEETVAEINATMSVHLPFAVVGSTEEVKIG 246
Query: 843 NKMMKARQYPWGTGRVE 893
NKM KARQYPWG +VE
Sbjct: 247 NKMAKARQYPWGVVQVE 263
>ref|NP_001092282.1| septin-8 isoform c [Homo sapiens].
Length = 442
Score = 402 bits (1032), Expect = e-112
Identities = 198/250 (79%), Positives = 222/250 (88%)
Frame = +3
Query: 144 RTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATH 323
R++ L GHVGFDSLPDQLV+KSV+QGF FNILCVGETG+GKSTLM+TLFNT FE E A+H
Sbjct: 17 RSLSLGGHVGFDSLPDQLVSKSVTQGFSFNILCVGETGIGKSTLMNTLFNTTFETEEASH 76
Query: 324 TQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEEL 503
+ V+LR TYDLQESNV LKLTIV VGFGDQINK++SY+PIV++IDAQFE YLQEEL
Sbjct: 77 HEACVRLRPQTYDLQESNVQLKLTIVDAVGFGDQINKDESYRPIVDYIDAQFENYLQEEL 136
Query: 504 KIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSEL 683
KIRR L YHD+RIH CLYFI PTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D ISKSEL
Sbjct: 137 KIRRSLFDYHDTRIHVCLYFITPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTISKSEL 196
Query: 684 TKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMKAR 863
KFKIKI ELVSNGVQIYQFPTDDE+VAEIN MNAHLPFAV+GSTEE+K+GNK+++AR
Sbjct: 197 HKFKIKIMGELVSNGVQIYQFPTDDEAVAEINAVMNAHLPFAVVGSTEEVKVGNKLVRAR 256
Query: 864 QYPWGTGRVE 893
QYPWG +VE
Sbjct: 257 QYPWGVVQVE 266
>ref|NP_001092281.1| septin-8 isoform a [Homo sapiens].
Length = 483
Score = 402 bits (1032), Expect = e-112
Identities = 198/250 (79%), Positives = 222/250 (88%)
Frame = +3
Query: 144 RTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATH 323
R++ L GHVGFDSLPDQLV+KSV+QGF FNILCVGETG+GKSTLM+TLFNT FE E A+H
Sbjct: 17 RSLSLGGHVGFDSLPDQLVSKSVTQGFSFNILCVGETGIGKSTLMNTLFNTTFETEEASH 76
Query: 324 TQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEEL 503
+ V+LR TYDLQESNV LKLTIV VGFGDQINK++SY+PIV++IDAQFE YLQEEL
Sbjct: 77 HEACVRLRPQTYDLQESNVQLKLTIVDAVGFGDQINKDESYRPIVDYIDAQFENYLQEEL 136
Query: 504 KIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSEL 683
KIRR L YHD+RIH CLYFI PTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D ISKSEL
Sbjct: 137 KIRRSLFDYHDTRIHVCLYFITPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTISKSEL 196
Query: 684 TKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMKAR 863
KFKIKI ELVSNGVQIYQFPTDDE+VAEIN MNAHLPFAV+GSTEE+K+GNK+++AR
Sbjct: 197 HKFKIKIMGELVSNGVQIYQFPTDDEAVAEINAVMNAHLPFAVVGSTEEVKVGNKLVRAR 256
Query: 864 QYPWGTGRVE 893
QYPWG +VE
Sbjct: 257 QYPWGVVQVE 266
>ref|NP_055961.1| septin-8 isoform b [Homo sapiens].
Length = 429
Score = 402 bits (1032), Expect = e-112
Identities = 198/250 (79%), Positives = 222/250 (88%)
Frame = +3
Query: 144 RTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATH 323
R++ L GHVGFDSLPDQLV+KSV+QGF FNILCVGETG+GKSTLM+TLFNT FE E A+H
Sbjct: 17 RSLSLGGHVGFDSLPDQLVSKSVTQGFSFNILCVGETGIGKSTLMNTLFNTTFETEEASH 76
Query: 324 TQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEEL 503
+ V+LR TYDLQESNV LKLTIV VGFGDQINK++SY+PIV++IDAQFE YLQEEL
Sbjct: 77 HEACVRLRPQTYDLQESNVQLKLTIVDAVGFGDQINKDESYRPIVDYIDAQFENYLQEEL 136
Query: 504 KIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSEL 683
KIRR L YHD+RIH CLYFI PTGHSLKSLDLVTMKKLDSKVNIIPIIAK+D ISKSEL
Sbjct: 137 KIRRSLFDYHDTRIHVCLYFITPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTISKSEL 196
Query: 684 TKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMKAR 863
KFKIKI ELVSNGVQIYQFPTDDE+VAEIN MNAHLPFAV+GSTEE+K+GNK+++AR
Sbjct: 197 HKFKIKIMGELVSNGVQIYQFPTDDEAVAEINAVMNAHLPFAVVGSTEEVKVGNKLVRAR 256
Query: 864 QYPWGTGRVE 893
QYPWG +VE
Sbjct: 257 QYPWGVVQVE 266
>ref|NP_848699.1| septin-10 isoform 2 [Homo sapiens].
Length = 431
Score = 397 bits (1019), Expect = e-110
Identities = 186/253 (73%), Positives = 226/253 (89%)
Frame = +3
Query: 135 EGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEP 314
E R++ ++GHVGF+SLPDQLVN+S+ QGFCFNILCVGETG+GKSTL+DTLFNT FE
Sbjct: 13 ENIRSLTMSGHVGFESLPDQLVNRSIQQGFCFNILCVGETGIGKSTLIDTLFNTNFEDYE 72
Query: 315 ATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQ 494
++H P V+L++ TY+LQESNV LKLTIV+TVGFGDQINKE+SY+PIV++IDAQFEAYLQ
Sbjct: 73 SSHFCPNVKLKAQTYELQESNVQLKLTIVNTVGFGDQINKEESYQPIVDYIDAQFEAYLQ 132
Query: 495 EELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISK 674
EELKI+R L TYHDSRIH CLYFI+PTGHSLK+LDL+TMK LDSKVNIIP+IAK+D +SK
Sbjct: 133 EELKIKRSLFTYHDSRIHVCLYFISPTGHSLKTLDLLTMKNLDSKVNIIPVIAKADTVSK 192
Query: 675 SELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMM 854
+EL KFKIK+ SELVSNGVQIYQFPTDD+++A++N MN LPFAV+GS +E+K+GNKM+
Sbjct: 193 TELQKFKIKLMSELVSNGVQIYQFPTDDDTIAKVNAAMNGQLPFAVVGSMDEVKVGNKMV 252
Query: 855 KARQYPWGTGRVE 893
KARQYPWG +VE
Sbjct: 253 KARQYPWGVVQVE 265
>ref|NP_653311.1| septin-10 isoform 1 [Homo sapiens].
Length = 454
Score = 397 bits (1019), Expect = e-110
Identities = 186/253 (73%), Positives = 226/253 (89%)
Frame = +3
Query: 135 EGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEP 314
E R++ ++GHVGF+SLPDQLVN+S+ QGFCFNILCVGETG+GKSTL+DTLFNT FE
Sbjct: 36 ENIRSLTMSGHVGFESLPDQLVNRSIQQGFCFNILCVGETGIGKSTLIDTLFNTNFEDYE 95
Query: 315 ATHTQPGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQ 494
++H P V+L++ TY+LQESNV LKLTIV+TVGFGDQINKE+SY+PIV++IDAQFEAYLQ
Sbjct: 96 SSHFCPNVKLKAQTYELQESNVQLKLTIVNTVGFGDQINKEESYQPIVDYIDAQFEAYLQ 155
Query: 495 EELKIRRVLHTYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISK 674
EELKI+R L TYHDSRIH CLYFI+PTGHSLK+LDL+TMK LDSKVNIIP+IAK+D +SK
Sbjct: 156 EELKIKRSLFTYHDSRIHVCLYFISPTGHSLKTLDLLTMKNLDSKVNIIPVIAKADTVSK 215
Query: 675 SELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMM 854
+EL KFKIK+ SELVSNGVQIYQFPTDD+++A++N MN LPFAV+GS +E+K+GNKM+
Sbjct: 216 TELQKFKIKLMSELVSNGVQIYQFPTDDDTIAKVNAAMNGQLPFAVVGSMDEVKVGNKMV 275
Query: 855 KARQYPWGTGRVE 893
KARQYPWG +VE
Sbjct: 276 KARQYPWGVVQVE 288
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,740,161
Number of extensions: 1145808
Number of successful extensions: 4088
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 4001
Number of HSP's successfully gapped: 38
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013457
(1038 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 383 e-103
Sscrofa_Chr02 86 4e-14
Sscrofa_Chr08 74 2e-10
>Sscrofa_ChrX
|| Length = 144288218
Score = 383 bits (193), Expect = e-103
Identities = 196/197 (99%)
Strand = Plus / Plus
Query: 246 ggagagacaggtttgggcaagtccacccttatggacaccctgttcaacaccaagttcgag 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113584986 ggagagacaggtttgggcaagtccacccttatggacaccctgttcaacaccaagttcgag 113585045
Query: 306 ggggagccagccacccatacacagccaggtgtccagctccggtccaatacctatgacctt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113585046 ggggagccagccacccatacacagccaggtgtccagctccggtccaatacctatgacctt 113585105
Query: 366 caagagagcaacgtgggcctgaagctcaccatcgttagcacagtgggcttcggggatcag 425
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 113585106 caagagagcaacgtgggcctgaagctcaccattgttagcacagtgggcttcggggatcag 113585165
Query: 426 atcaacaaggaagacag 442
|||||||||||||||||
Sbjct: 113585166 atcaacaaggaagacag 113585182
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 440 cagctacaagcccatcgtggaattcatcgacgcccaatttgaggcctatctgcaggagga 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113600153 cagctacaagcccatcgtggaattcatcgacgcccaatttgaggcctatctgcaggagga 113600212
Query: 500 gctgaagatccgcagggtactgcacacctaccacgactcccgcatccacgcctgcttgta 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113600213 gctgaagatccgcagggtactgcacacctaccacgactcccgcatccacgcctgcttgta 113600272
Query: 560 cttcatcgcccccacgggtcactccttgaagtctctggacctagtgacgatgaagaagct 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113600273 cttcatcgcccccacgggtcactccttgaagtctctggacctagtgacgatgaagaagct 113600332
Query: 620 ggacagtaaggt 631
||||||||||||
Sbjct: 113600333 ggacagtaaggt 113600344
Score = 327 bits (165), Expect = 7e-87
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 628 aggtgaacatcatccccatcattgccaaatcggatgccatttctaagagtgagctaacga 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113603439 aggtgaacatcatccccatcattgccaaatcggatgccatttctaagagtgagctaacga 113603498
Query: 688 agttcaaaatcaaaatcaccagcgagcttgtcagcaacggagtccagatctaccagttcc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113603499 agttcaaaatcaaaatcaccagcgagcttgtcagcaacggagtccagatctaccagttcc 113603558
Query: 748 ccacagatgatgagtcggtggcagagatcaatggaaccatgaacg 792
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113603559 ccacagatgatgagtcggtggcagagatcaatggaaccatgaacg 113603603
Score = 305 bits (154), Expect = 3e-80
Identities = 229/249 (91%), Gaps = 4/249 (1%)
Strand = Plus / Plus
Query: 792 gcccacctgccgtttgccgtcattggcagcacagaggagctgaagataggcaacaagatg 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113610378 gcccacctgccgtttgccgtcattggcagcacagaggagctgaagataggcaacaagatg 113610437
Query: 852 atgaaggcgcggcagtacccctggggcacgggccgggttgaaatgaagcccacggcctcg 911
||||||||||||||||||||||||||||||| | || ||| ||| | |||||||
Sbjct: 113610438 atgaaggcgcggcagtacccctggggcacggtgcagggtgag-tgaggagaggggcctcg 113610496
Query: 912 tgcang-atctcctgtctgtctccttgcctgtccccagcccctatgtccccagtgtctac 970
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113610497 cgcagggatctcctgtctgtctccttgcctgtccccagcccctatgtccccagtgtctac 113610556
Query: 971 acattcagctccggccctc-aacatccataggggtcggcgggggcaaactctggcttcgt 1029
|||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct: 113610557 acattcggctcc-gccctcaaacatccataggggtcgccgggggcaaactctggctccgt 113610615
Query: 1030 acctggatg 1038
|||||||||
Sbjct: 113610616 acctggatg 113610624
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 1 gaagtgtaacactttctctttgtcggaggagctccgctgtttcctgtgctgtagctcccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113559546 gaagtgtaacactttctctttgtcggaggagctccgctgtttcctgtgctgtagctcccg 113559605
Query: 61 ttgcggcggcgcccgtggcagccctggcggacgcaggagcgatggcagcgaccgatatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113559606 ttgcggcggcgcccgtggcagccctggcggacgcaggagcgatggcagcgaccgatatag 113559665
Query: 121 ctcgccaggtgg 132
||||||||||||
Sbjct: 113559666 ctcgccaggtgg 113559677
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 131 gggtgaaggttgccgaactgtccccctggctggacatgtggggtttgacagcttgcccga 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113575720 gggtgaaggttgccgaactgtccccctggctggacatgtggggtttgacagcttgcccga 113575779
Query: 191 ccagctggtgaataagtcagtcagccagggcttctgcttcaacatcctgtgcgtggg 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113575780 ccagctggtgaataagtcagtcagccagggcttctgcttcaacatcctgtgcgtggg 113575836
>Sscrofa_Chr02
|| Length = 162569375
Score = 85.7 bits (43), Expect = 4e-14
Identities = 124/151 (82%)
Strand = Plus / Minus
Query: 628 aggtgaacatcatccccatcattgccaaatcggatgccatttctaagagtgagctaacga 687
||||||||||||| |||||||||||||| | || |||| || ||||||||||| |
Sbjct: 140558280 aggtgaacatcattcccatcattgccaaggctgacaccatctccaagagtgagctccaca 140558221
Query: 688 agttcaaaatcaaaatcaccagcgagcttgtcagcaacggagtccagatctaccagttcc 747
||||||| ||||| |||| ||||||| |||||||| || ||||||||||||||||| |
Sbjct: 140558220 agttcaagatcaagatcatgggcgagctggtcagcaatggggtccagatctaccagtttc 140558161
Query: 748 ccacagatgatgagtcggtggcagagatcaa 778
|||| ||||| ||| | || || ||||||||
Sbjct: 140558160 ccactgatgacgaggctgttgccgagatcaa 140558130
Score = 69.9 bits (35), Expect = 3e-09
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 354 acctatgaccttcaagagagcaacgtgggcctgaagctcaccatcgttagcacagtgggc 413
||||| ||||| ||||||||||||||| || ||||| |||||||| | | ||||||
Sbjct: 140559922 acctacgacctccaagagagcaacgtgcagcttaagctgaccatcgtggacgccgtgggc 140559863
Query: 414 ttcggggatcagatcaacaagga 436
|||||||||||||||||||||||
Sbjct: 140559862 ttcggggatcagatcaacaagga 140559840
Score = 61.9 bits (31), Expect = 6e-07
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 165 catgtggggtttgacagcttgcccgaccagctggtgaataagtcagtcagccagggcttc 224
|||||||| ||||||||| | |||||||||||||| | ||||| |||| |||||||||
Sbjct: 140561623 catgtgggctttgacagcctccccgaccagctggtcagcaagtcggtcactcagggcttc 140561564
Query: 225 tgcttcaacatcctgtgcgtggg 247
||||||| ||||| || |||||
Sbjct: 140561563 agcttcaatatcctctgtgtggg 140561541
>Sscrofa_Chr08
|| Length = 148491826
Score = 73.8 bits (37), Expect = 2e-10
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 527 ctaccacgactcccgcatccacgcctgcttgtacttcatcgcccccacgggtcactcctt 586
|||||||||| || | ||||||||||| | ||||| |||||||| || || ||||| |
Sbjct: 76856316 ctaccacgacaccaggatccacgcctgtctctactttatcgccccaaccgggcactcgct 76856375
Query: 587 gaagtctctggacctagtgacgatgaagaagctggacagtaaggt 631
|||||| |||||||| || || ||||||||||||||||| |||||
Sbjct: 76856376 gaagtccctggacctggtcaccatgaagaagctggacagcaaggt 76856420
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,197,439
Number of extensions: 123
Number of successful extensions: 123
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 11
Length of query: 1038
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1017
Effective length of database: 2,808,413,156
Effective search space: 2856156179652
Effective search space used: 2856156179652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)