Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013464
(977 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073056.1| U3 small nucleolar ribonucleoprotein protein... 334 6e-92
Alignment gi|NP_001094622.1| 40S ribosomal protein S9 [Bos taurus]. 55 9e-08
>ref|NP_001073056.1| U3 small nucleolar ribonucleoprotein protein IMP3 [Bos taurus].
Length = 184
Score = 334 bits (857), Expect = 6e-92
Identities = 168/184 (91%), Positives = 170/184 (92%)
Frame = +2
Query: 47 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHEXXXXXXXXXXXXEDYTRYNQLSRAVRELAR 226
MVRKLKFHEQKLLKQVDFLNWEVTDHNLHE EDYTRYNQLSRAVRELAR
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 227 RLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 406
RLRDLPERDPFRVR+SAALLDKLYALGLVPTRGS ELCDFVTASSFCRRRLPTVLLKLRM
Sbjct: 61 RLRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRM 120
Query: 407 AQHLQAAVTFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 586
AQHLQAAV FVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180
Query: 587 DLEA 598
DL+A
Sbjct: 181 DLDA 184
>ref|NP_001094622.1| 40S ribosomal protein S9 [Bos taurus].
Length = 194
Score = 55.1 bits (131), Expect = 9e-08
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = +2
Query: 209 VRELARRLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTA---SSFCRRRL 379
+R+ AR L L E+DP R+ ALL +L +G++ G ++L D++ F RRL
Sbjct: 53 IRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLD-EGKMKL-DYILGLKIEDFLERRL 110
Query: 380 PTVLLKLRMAQHLQAAVTFVEQGHVRVGPDVVTDPAFLV 496
T + KL +A+ + A + Q H+RV VV P+F+V
Sbjct: 111 QTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIV 149
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,434,578
Number of extensions: 823128
Number of successful extensions: 2120
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2117
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013464
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013464
(977 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544781.1| PREDICTED: similar to U3 small nucleolar ribonu... 335 3e-92
Alignment gi|XP_853376.1| PREDICTED: similar to U3 small nucleolar ribonu... 236 2e-62
Alignment gi|XP_533590.2| PREDICTED: similar to 40S ribosomal protein S9 ... 55 1e-07
>ref|XP_544781.1| PREDICTED: similar to U3 small nucleolar ribonucleoprotein protein
IMP3 (U3 snoRNP protein IMP3) (BRMS2) [Canis
familiaris].
Length = 224
Score = 335 bits (860), Expect = 3e-92
Identities = 169/188 (89%), Positives = 172/188 (91%)
Frame = +2
Query: 35 GAAIMVRKLKFHEQKLLKQVDFLNWEVTDHNLHEXXXXXXXXXXXXEDYTRYNQLSRAVR 214
GAAIMVRKLKFHEQKLLKQVDFLNWE TDHNLHE EDYTRYNQLSRAVR
Sbjct: 37 GAAIMVRKLKFHEQKLLKQVDFLNWEATDHNLHELRVLRRYRLQRREDYTRYNQLSRAVR 96
Query: 215 ELARRLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLL 394
ELARRLRDLPERDPFRVRASAALLDKLYALGLVPTRGSL LCD VTAS+FCRRRLPTVLL
Sbjct: 97 ELARRLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLALCDSVTASAFCRRRLPTVLL 156
Query: 395 KLRMAQHLQAAVTFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEE 574
KLRMAQHLQAAV FVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSS+I+RHVLEYNEE
Sbjct: 157 KLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSRIRRHVLEYNEE 216
Query: 575 RDDFDLEA 598
RDDFDLEA
Sbjct: 217 RDDFDLEA 224
>ref|XP_853376.1| PREDICTED: similar to U3 small nucleolar ribonucleoprotein protein
IMP3 (U3 snoRNP protein IMP3) (BRMS2) [Canis
familiaris].
Length = 503
Score = 236 bits (603), Expect = 2e-62
Identities = 133/197 (67%), Positives = 138/197 (70%), Gaps = 7/197 (3%)
Frame = +2
Query: 29 GIGAAIMVRKLKFHEQKLLKQVDFLNWEVTDHNLHEXXXXXXXXXXXXEDYTRYNQLSRA 208
G A IMVRKLKFHEQKLLKQVDFLNWE TDHNLHE ++ R
Sbjct: 325 GAEAEIMVRKLKFHEQKLLKQVDFLNWEATDHNLHEL------------------RVLRR 366
Query: 209 VRELARRLRDLPERDPFRVRASAALLDKLYA-------LGLVPTRGSLELCDFVTASSFC 367
R R L P RA AA A LGLVPTRGSL LC VTAS+FC
Sbjct: 367 YRGSGGRTTRLQPAAPGGARAGAASARPPRARPVPRARLGLVPTRGSLALCHSVTASAFC 426
Query: 368 RRRLPTVLLKLRMAQHLQAAVTFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIK 547
RRRLPT LLKLRMAQHLQAAV FVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSS+I+
Sbjct: 427 RRRLPTELLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSRIR 486
Query: 548 RHVLEYNEERDDFDLEA 598
RHVLEYNEERDDFDLEA
Sbjct: 487 RHVLEYNEERDDFDLEA 503
>ref|XP_533590.2| PREDICTED: similar to 40S ribosomal protein S9 [Canis familiaris].
Length = 194
Score = 55.1 bits (131), Expect = 1e-07
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = +2
Query: 209 VRELARRLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTA---SSFCRRRL 379
+R+ AR L L E+DP R+ ALL +L +G++ G ++L D++ F RRL
Sbjct: 53 IRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLD-EGKMKL-DYILGLKIEDFLERRL 110
Query: 380 PTVLLKLRMAQHLQAAVTFVEQGHVRVGPDVVTDPAFLV 496
T + KL +A+ + A + Q H+RV VV P+F+V
Sbjct: 111 QTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIV 149
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,901,198
Number of extensions: 852976
Number of successful extensions: 2241
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2237
Number of HSP's successfully gapped: 3
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013464
(977 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230221.1| u3 small nucleolar ribonucleoprotein protein... 341 4e-94
Alignment gi|XP_003356098.1| PREDICTED: LOW QUALITY PROTEIN: 40S ribosoma... 55 6e-08
>ref|NP_001230221.1| u3 small nucleolar ribonucleoprotein protein IMP3 [Sus scrofa].
Length = 184
Score = 341 bits (874), Expect = 4e-94
Identities = 172/184 (93%), Positives = 172/184 (93%)
Frame = +2
Query: 47 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHEXXXXXXXXXXXXEDYTRYNQLSRAVRELAR 226
MVRKLKFHEQKLLKQVDFLNWEVTDHNLHE EDYTRYNQLSRAVRELAR
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 227 RLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 406
RLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM
Sbjct: 61 RLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120
Query: 407 AQHLQAAVTFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 586
AQHLQAAVTFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF
Sbjct: 121 AQHLQAAVTFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180
Query: 587 DLEA 598
DLEA
Sbjct: 181 DLEA 184
>ref|XP_003356098.1| PREDICTED: LOW QUALITY PROTEIN: 40S ribosomal protein S9-like,
partial [Sus scrofa].
Length = 209
Score = 55.1 bits (131), Expect = 6e-08
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = +2
Query: 209 VRELARRLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTA---SSFCRRRL 379
+R+ AR L L E+DP R+ ALL +L +G++ G ++L D++ F RRL
Sbjct: 68 IRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLD-EGKMKL-DYILGLKIEDFLERRL 125
Query: 380 PTVLLKLRMAQHLQAAVTFVEQGHVRVGPDVVTDPAFLV 496
T + KL +A+ + A + Q H+RV VV P+F+V
Sbjct: 126 QTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIV 164
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,557,480
Number of extensions: 528665
Number of successful extensions: 1447
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1442
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013464
(977 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598737.1| U3 small nucleolar ribonucleoprotein protein IM... 330 1e-90
Alignment gi|NP_084043.1| 40S ribosomal protein S9 [Mus musculus]. 55 8e-08
>ref|NP_598737.1| U3 small nucleolar ribonucleoprotein protein IMP3 [Mus musculus].
Length = 184
Score = 330 bits (845), Expect = 1e-90
Identities = 165/184 (89%), Positives = 170/184 (92%)
Frame = +2
Query: 47 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHEXXXXXXXXXXXXEDYTRYNQLSRAVRELAR 226
MVRKLKFHEQKLLKQVDFLNWEVTDHNLHE E+YTRYNQLSRAVRELAR
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELAR 60
Query: 227 RLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 406
RLRDLPERDPFRVRASAALLDKLYA+GLVPTRGSLELCD V+ASSFCRRRLPT+LLKLRM
Sbjct: 61 RLRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRM 120
Query: 407 AQHLQAAVTFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 586
AQHLQAAV FVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180
Query: 587 DLEA 598
DL+A
Sbjct: 181 DLDA 184
>ref|NP_084043.1| 40S ribosomal protein S9 [Mus musculus].
Length = 194
Score = 55.1 bits (131), Expect = 8e-08
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = +2
Query: 209 VRELARRLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTA---SSFCRRRL 379
+R+ AR L L E+DP R+ ALL +L +G++ G ++L D++ F RRL
Sbjct: 53 IRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLD-EGKMKL-DYILGLKIEDFLERRL 110
Query: 380 PTVLLKLRMAQHLQAAVTFVEQGHVRVGPDVVTDPAFLV 496
T + KL +A+ + A + Q H+RV VV P+F+V
Sbjct: 111 QTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIV 149
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,952,223
Number of extensions: 696713
Number of successful extensions: 1873
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1872
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013464
(977 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060755.1| U3 small nucleolar ribonucleoprotein protein IM... 336 2e-92
Alignment gi|NP_001004.2| 40S ribosomal protein S9 [Homo sapiens]. 55 1e-07
>ref|NP_060755.1| U3 small nucleolar ribonucleoprotein protein IMP3 [Homo sapiens].
Length = 184
Score = 336 bits (861), Expect = 2e-92
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +2
Query: 47 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHEXXXXXXXXXXXXEDYTRYNQLSRAVRELAR 226
MVRKLKFHEQKLLKQVDFLNWEVTDHNLHE EDYTRYNQLSRAVRELAR
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 227 RLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 406
RLRDLPERD FRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM
Sbjct: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120
Query: 407 AQHLQAAVTFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 586
AQHLQAAV FVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180
Query: 587 DLEA 598
DLEA
Sbjct: 181 DLEA 184
>ref|NP_001004.2| 40S ribosomal protein S9 [Homo sapiens].
Length = 194
Score = 55.1 bits (131), Expect = 1e-07
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = +2
Query: 209 VRELARRLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTA---SSFCRRRL 379
+R+ AR L L E+DP R+ ALL +L +G++ G ++L D++ F RRL
Sbjct: 53 IRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLD-EGKMKL-DYILGLKIEDFLERRL 110
Query: 380 PTVLLKLRMAQHLQAAVTFVEQGHVRVGPDVVTDPAFLV 496
T + KL +A+ + A + Q H+RV VV P+F+V
Sbjct: 111 QTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIV 149
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,140,164
Number of extensions: 834304
Number of successful extensions: 2193
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2192
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013464
(977 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1806 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1806 bits (911), Expect = 0.0
Identities = 967/982 (98%), Gaps = 5/982 (0%)
Strand = Plus / Plus
Query: 1 ggaacacgctctgagcctctggtccagcggtatcggagccgccatcatggtgcggaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712260 ggaacacgctctgagcctctggtccagcggtatcggagccgccatcatggtgcggaagct 62712319
Query: 61 taagttccacgagcaaaagctgctgaagcaggtggacttcctaaactgggaggtcaccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712320 taagttccacgagcaaaagctgctgaagcaggtggacttcctaaactgggaggtcaccga 62712379
Query: 121 ccataacctgcatgagcttcgcgtgttgcggcgttatcggctgcagcggcgggaggacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712380 ccataacctgcatgagcttcgcgtgttgcggcgttatcggctgcagcggcgggaggacta 62712439
Query: 181 cacgcgctacaaccaactgagccgtgctgtacgcgaactggcgcggcgcctgcgggactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712440 cacgcgctacaaccaactgagccgtgctgtacgcgaactggcgcggcgcctgcgggactt 62712499
Query: 241 gccggagcgggacccttttcgcgtgcgcgcttcggcagcgctgctggacaagctgtatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712500 gccggagcgggacccttttcgcgtgcgcgcttcggcagcgctgctggacaagctgtatgc 62712559
Query: 301 tctcggcctagtgcccacgcgcgggtcgctggaactatgcgatttcgtcactgcctcgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712560 tctcggcctagtgcccacgcgcgggtcgctggaactatgcgatttcgtcactgcctcgtc 62712619
Query: 361 cttttgccgccgccgcctgcccacggtgctccttaagctgcgcatggctcaacacctcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712620 cttttgccgccgccgcctgcccacggtgctccttaagctgcgcatggctcaacacctcca 62712679
Query: 421 ggccgccgtgactttcgtagagcagggccacgtgcgcgtgggccccgacgtggtcacgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712680 ggccgccgtgactttcgtagagcagggccacgtgcgcgtgggccccgacgtggtcacgga 62712739
Query: 481 tcccgccttccttgtcacgcgcagcatggaggactttgttacctgggttgactcgtccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712740 tcccgccttccttgtcacgcgcagcatggaggactttgttacctgggttgactcgtccaa 62712799
Query: 541 gatcaagcggcacgtgctggagtacaatgaggagcgtgacgacttcgatctggaagccta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712800 gatcaagcggcacgtgctggagtacaatgaggagcgtgacgacttcgatctggaagccta 62712859
Query: 601 gcgggtcctccctccctaggacggcattttatagatgcagaagcccagacctgatgcctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712860 gcgggtcctccctccctaggacggcattttatagatgcagaagcccagacctgatgcctg 62712919
Query: 661 agattctgtgaggacgctctcccagaagtgtgtcagctagtcgtcggttattaagaactt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712920 agattctgtgaggacgctctcccagaagtgtgtcagctagtcgtcggttattaagaactt 62712979
Query: 721 ggctcctcagctacaagccacgcgcggagccaaagggtacgcccgttttccacgaatttt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62712980 ggctcctcagctacaagccacgcgcggagccaaagggtacgcccgttttccacgaatttt 62713039
Query: 781 tcttagcctttggacgatttagaattaaatgactgcctttagagaccatgagaagcggtt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62713040 tcttagcctttggacgatttagaattaaatgactgcctttagagaccatgagaagcggtt 62713099
Query: 841 ttgtgcttcactggggagttgttagattttggtacctgaaacatcgtagtgtgaaagaaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62713100 ttgtgcttcactggggagttgttagattttggtacctgaaacatcgtagtgtgaaagaaa 62713159
Query: 901 ggactttgcnnnnnnnnncacccctacattt-ccttttatcttc-tgtaggacag-ttgg 957
||||||||| ||||||||||||| ||||| |||||| |||||||||| ||||
Sbjct: 62713160 ggactttgcgggggggggcacccctacatttccctttcatcttcttgtaggacagtttgg 62713219
Query: 958 ttt-actta-ttaactcgaatt 977
||| ||||| ||||||||||||
Sbjct: 62713220 tttaacttatttaactcgaatt 62713241
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,639,145
Number of extensions: 109
Number of successful extensions: 109
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 977
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 956
Effective length of database: 2,808,413,156
Effective search space: 2684842977136
Effective search space used: 2684842977136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)