Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013465
(1023 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039526.1| cytochrome c [Bos taurus]. 223 2e-58
Alignment gi|NP_001071431.1| cytochrome c 2 [Bos taurus]. 197 1e-50
Alignment gi|XP_002685001.1| PREDICTED: cytochrome c, somatic-like [Bos t... 170 2e-42
Alignment gi|XP_002702320.1| PREDICTED: cytochrome c, somatic-like [Bos t... 170 2e-42
>ref|NP_001039526.1| cytochrome c [Bos taurus].
Length = 105
Score = 223 bits (568), Expect = 2e-58
Identities = 105/105 (100%), Positives = 105/105 (100%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW
Sbjct: 1 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE
Sbjct: 61 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 105
>ref|NP_001071431.1| cytochrome c 2 [Bos taurus].
Length = 105
Score = 197 bits (501), Expect = 1e-50
Identities = 91/104 (87%), Positives = 97/104 (93%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
M D E GKKIF+QKCAQCHTVEKGGKHKTGPNL GLFGRKTGQAPGFSYT+ANKNKGI W
Sbjct: 1 MADAEAGKKIFIQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTEANKNKGIIW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATN 442
GE+TLMEYLENPKKYIPGTKMIFAG+KKK EREDLI YLK+AT+
Sbjct: 61 GEQTLMEYLENPKKYIPGTKMIFAGLKKKSEREDLIEYLKQATS 104
>ref|XP_002685001.1| PREDICTED: cytochrome c, somatic-like [Bos taurus].
Length = 104
Score = 170 bits (430), Expect = 2e-42
Identities = 79/105 (75%), Positives = 91/105 (86%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
M +VEK K IF+QKC QCHT++KGG+HK PNLHGLFG+KTGQAPGFSYTD+N++KGI+W
Sbjct: 1 MDNVEKDK-IFIQKCVQCHTMDKGGRHKIEPNLHGLFGQKTGQAPGFSYTDSNRSKGISW 59
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GEETLM Y+ENPKKYI GTKMIF GIKK ER DLI Y +KATNE
Sbjct: 60 GEETLMGYMENPKKYIRGTKMIFTGIKKMAERADLIVYPQKATNE 104
>ref|XP_002702320.1| PREDICTED: cytochrome c, somatic-like [Bos taurus].
Length = 104
Score = 170 bits (430), Expect = 2e-42
Identities = 79/105 (75%), Positives = 91/105 (86%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
M +VEK K IF+QKC QCHT++KGG+HK PNLHGLFG+KTGQAPGFSYTD+N++KGI+W
Sbjct: 1 MDNVEKDK-IFIQKCVQCHTMDKGGRHKIEPNLHGLFGQKTGQAPGFSYTDSNRSKGISW 59
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GEETLM Y+ENPKKYI GTKMIF GIKK ER DLI Y +KATNE
Sbjct: 60 GEETLMGYMENPKKYIRGTKMIFTGIKKMAERADLIVYPQKATNE 104
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,632,462
Number of extensions: 950066
Number of successful extensions: 2360
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2358
Number of HSP's successfully gapped: 4
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013465
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013465
(1023 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001183974.1| cytochrome c [Canis lupus familiaris]. 216 3e-56
>ref|NP_001183974.1| cytochrome c [Canis lupus familiaris].
Length = 105
Score = 216 bits (550), Expect = 3e-56
Identities = 102/105 (97%), Positives = 102/105 (97%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW
Sbjct: 1 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GEETLMEYLENPKKYIPGTKMIFAGIKK GER DLIAYLKKAT E
Sbjct: 61 GEETLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYLKKATKE 105
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,108,582
Number of extensions: 960161
Number of successful extensions: 2396
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2395
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013465
(1023 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123442.1| cytochrome c [Sus scrofa]. 223 1e-58
Alignment gi|XP_003357320.1| PREDICTED: cytochrome c-like [Sus scrofa]. 214 8e-56
Alignment gi|XP_001927439.1| PREDICTED: cytochrome c-like [Sus scrofa]. 207 6e-54
Alignment gi|XP_003131860.1| PREDICTED: cytochrome c-like [Sus scrofa]. 196 2e-50
Alignment gi|XP_003135254.1| PREDICTED: cytochrome c-like [Sus scrofa]. 191 6e-49
Alignment gi|XP_003131897.1| PREDICTED: cytochrome c-like [Sus scrofa]. 184 9e-47
Alignment gi|XP_003130517.1| PREDICTED: cytochrome c-like [Sus scrofa]. 180 1e-45
Alignment gi|XP_003123169.1| PREDICTED: cytochrome c-like [Sus scrofa]. 175 4e-44
Alignment gi|XP_003133465.1| PREDICTED: cytochrome c-like [Sus scrofa]. 163 2e-40
>ref|NP_001123442.1| cytochrome c [Sus scrofa].
Length = 105
Score = 223 bits (568), Expect = 1e-58
Identities = 105/105 (100%), Positives = 105/105 (100%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW
Sbjct: 1 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE
Sbjct: 61 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 105
>ref|XP_003357320.1| PREDICTED: cytochrome c-like [Sus scrofa].
Length = 105
Score = 214 bits (544), Expect = 8e-56
Identities = 100/105 (95%), Positives = 103/105 (98%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDV+KGKKIFVQKCAQCHTVEKGGKHKTGPNL GLFG KTGQAPGFSYTDANKNKGITW
Sbjct: 1 MGDVKKGKKIFVQKCAQCHTVEKGGKHKTGPNLQGLFGWKTGQAPGFSYTDANKNKGITW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GEETLMEYLENPKKY+PGTKMIFAGIKKKG+REDLIAYLKKATNE
Sbjct: 61 GEETLMEYLENPKKYVPGTKMIFAGIKKKGDREDLIAYLKKATNE 105
>ref|XP_001927439.1| PREDICTED: cytochrome c-like [Sus scrofa].
Length = 105
Score = 207 bits (528), Expect = 6e-54
Identities = 98/105 (93%), Positives = 101/105 (96%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFG KTGQAPGF+YTDANK+KG+TW
Sbjct: 1 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGWKTGQAPGFTYTDANKSKGVTW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GEETLMEYLENPKK IPG KMIFAGIKKKGEREDL AYLKKATNE
Sbjct: 61 GEETLMEYLENPKKCIPGMKMIFAGIKKKGEREDLGAYLKKATNE 105
>ref|XP_003131860.1| PREDICTED: cytochrome c-like [Sus scrofa].
Length = 105
Score = 196 bits (497), Expect = 2e-50
Identities = 90/105 (85%), Positives = 100/105 (95%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEKGKK+FVQK AQCHTVEKGGKHKTGPNLHGLFG+KTGQAPGF+YTDANK+KGI W
Sbjct: 1 MGDVEKGKKVFVQKGAQCHTVEKGGKHKTGPNLHGLFGQKTGQAPGFTYTDANKHKGIPW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GEETL+E+LENPKKYIPGTKM+FAGIK +GER+DL+A LKKAT E
Sbjct: 61 GEETLLEHLENPKKYIPGTKMVFAGIKTEGERDDLVACLKKATPE 105
>ref|XP_003135254.1| PREDICTED: cytochrome c-like [Sus scrofa].
Length = 106
Score = 191 bits (485), Expect = 6e-49
Identities = 90/100 (90%), Positives = 95/100 (95%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
M DVEKGKKIF+QKCAQCHTVEKGGKHKTGPNLHGLFG+KTGQAPGF+YTDANKNKGITW
Sbjct: 1 MDDVEKGKKIFIQKCAQCHTVEKGGKHKTGPNLHGLFGQKTGQAPGFTYTDANKNKGITW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLK 430
GE+ LMEYLE KKYIPGTKMIFAGIKK GEREDL+AYLK
Sbjct: 61 GEK-LMEYLEKHKKYIPGTKMIFAGIKKAGEREDLVAYLK 99
>ref|XP_003131897.1| PREDICTED: cytochrome c-like [Sus scrofa].
Length = 105
Score = 184 bits (466), Expect = 9e-47
Identities = 85/105 (80%), Positives = 96/105 (91%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGD+EKGKK+FVQK AQCHTVEKGGKH TGPNLHGLFG+KTGQAPGF+YTDANK+KGI W
Sbjct: 1 MGDLEKGKKVFVQKGAQCHTVEKGGKHMTGPNLHGLFGQKTGQAPGFTYTDANKHKGIPW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GEETL+E+LENPKKYI TKM+ AGIK +GER+DL+A LKKAT E
Sbjct: 61 GEETLLEHLENPKKYISETKMVLAGIKTEGERDDLVACLKKATPE 105
>ref|XP_003130517.1| PREDICTED: cytochrome c-like [Sus scrofa].
Length = 105
Score = 180 bits (457), Expect = 1e-45
Identities = 85/105 (80%), Positives = 94/105 (89%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDV GK+IFVQK AQ H VEKGG+HKTGPNLH LFG+KTGQ PG +YTDANKNKGITW
Sbjct: 1 MGDVGNGKRIFVQKGAQSHNVEKGGEHKTGPNLHRLFGQKTGQPPGHTYTDANKNKGITW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GE TLME+LENPKKYIPGTKMIFAGIKKKGE + ++A+LKKATNE
Sbjct: 61 GEVTLMEHLENPKKYIPGTKMIFAGIKKKGEEDPVMAHLKKATNE 105
>ref|XP_003123169.1| PREDICTED: cytochrome c-like [Sus scrofa].
Length = 104
Score = 175 bits (443), Expect = 4e-44
Identities = 86/105 (81%), Positives = 89/105 (84%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEK K IFVQKCAQCHTVEKGGK KTGPNLHGLFG TGQ GFS D NKNKGITW
Sbjct: 1 MGDVEKNK-IFVQKCAQCHTVEKGGKQKTGPNLHGLFGWNTGQTVGFSSVDVNKNKGITW 59
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GEETL EYLE+ KKYIPGTKMIF IKKKGE+ DLIAYLKKA +E
Sbjct: 60 GEETLREYLEDRKKYIPGTKMIFVSIKKKGEKGDLIAYLKKAASE 104
>ref|XP_003133465.1| PREDICTED: cytochrome c-like [Sus scrofa].
Length = 97
Score = 163 bits (412), Expect = 2e-40
Identities = 79/101 (78%), Positives = 85/101 (84%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEKGK IFVQKC+QCHTVEKGGKH +GPNLHGLFG KTG APGF+Y+DA KNKG T
Sbjct: 1 MGDVEKGKNIFVQKCSQCHTVEKGGKHTSGPNLHGLFGWKTGHAPGFTYSDATKNKGNTR 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKK 433
GEETLMEYLENP KYI G K IF GIK+K DL+AYLKK
Sbjct: 61 GEETLMEYLENPNKYILGAKRIFTGIKEK----DLVAYLKK 97
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,659,012
Number of extensions: 624024
Number of successful extensions: 1490
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1489
Number of HSP's successfully gapped: 9
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013465
(1023 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031834.1| cytochrome c, somatic [Mus musculus]. 216 2e-56
Alignment gi|XP_001478454.1| PREDICTED: cytochrome c, somatic-like isofor... 216 2e-56
Alignment gi|XP_003086954.1| PREDICTED: cytochrome c, somatic-like [Mus m... 214 9e-56
Alignment gi|NP_034119.1| cytochrome c, testis-specific [Mus musculus]. 201 1e-51
Alignment gi|XP_003084723.1| PREDICTED: cytochrome c, somatic-like [Mus m... 181 1e-45
Alignment gi|XP_003086628.1| PREDICTED: cytochrome c, somatic-like [Mus m... 181 1e-45
>ref|NP_031834.1| cytochrome c, somatic [Mus musculus].
Length = 105
Score = 216 bits (551), Expect = 2e-56
Identities = 102/105 (97%), Positives = 103/105 (98%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQA GFSYTDANKNKGITW
Sbjct: 1 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GE+TLMEYLENPKKYIPGTKMIFAGIKKKGER DLIAYLKKATNE
Sbjct: 61 GEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKATNE 105
>ref|XP_001478454.1| PREDICTED: cytochrome c, somatic-like isoform 2 [Mus musculus].
Length = 105
Score = 216 bits (551), Expect = 2e-56
Identities = 102/105 (97%), Positives = 103/105 (98%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQA GFSYTDANKNKGITW
Sbjct: 1 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GE+TLMEYLENPKKYIPGTKMIFAGIKKKGER DLIAYLKKATNE
Sbjct: 61 GEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKATNE 105
>ref|XP_003086954.1| PREDICTED: cytochrome c, somatic-like [Mus musculus].
Length = 105
Score = 214 bits (545), Expect = 9e-56
Identities = 101/105 (96%), Positives = 102/105 (97%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFG KTGQA GFSYTDANKNKGITW
Sbjct: 1 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGXKTGQAAGFSYTDANKNKGITW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GE+TLMEYLENPKKYIPGTKMIFAGIKKKGER DLIAYLKKATNE
Sbjct: 61 GEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKATNE 105
>ref|NP_034119.1| cytochrome c, testis-specific [Mus musculus].
Length = 105
Score = 201 bits (510), Expect = 1e-51
Identities = 94/104 (90%), Positives = 97/104 (93%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGD E GKKIFVQKCAQCHTVEKGGKHKTGPNL GLFGRKTGQAPGFSYTDANKNKG+ W
Sbjct: 1 MGDAEAGKKIFVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATN 442
EETLMEYLENPKKYIPGTKMIFAGIKKK EREDLI YLK+AT+
Sbjct: 61 SEETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIKYLKQATS 104
>ref|XP_003084723.1| PREDICTED: cytochrome c, somatic-like [Mus musculus].
Length = 106
Score = 181 bits (458), Expect = 1e-45
Identities = 85/106 (80%), Positives = 95/106 (89%), Gaps = 1/106 (0%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEKGKKIFVQ+CAQCHTV KGGKHKTGPNL GLFG+KTGQA GFSYTDA+KN+GITW
Sbjct: 1 MGDVEKGKKIFVQRCAQCHTVRKGGKHKTGPNLQGLFGQKTGQAAGFSYTDASKNRGITW 60
Query: 311 GEETLME-YLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GE+TL++ +KYIPGTKMIFAGIKK GE++DLIAYLKKA NE
Sbjct: 61 GEDTLLDGVFRESQKYIPGTKMIFAGIKKTGEKKDLIAYLKKAANE 106
>ref|XP_003086628.1| PREDICTED: cytochrome c, somatic-like [Mus musculus].
Length = 106
Score = 181 bits (458), Expect = 1e-45
Identities = 85/106 (80%), Positives = 95/106 (89%), Gaps = 1/106 (0%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEKGKKIFVQ+CAQCHTV KGGKHKTGPNL GLFG+KTGQA GFSYTDA+KN+GITW
Sbjct: 1 MGDVEKGKKIFVQRCAQCHTVRKGGKHKTGPNLQGLFGQKTGQAAGFSYTDASKNRGITW 60
Query: 311 GEETLME-YLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GE+TL++ +KYIPGTKMIFAGIKK GE++DLIAYLKKA NE
Sbjct: 61 GEDTLLDGVFRESQKYIPGTKMIFAGIKKTGEKKDLIAYLKKAANE 106
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,038,592
Number of extensions: 814437
Number of successful extensions: 2084
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2080
Number of HSP's successfully gapped: 6
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013465
(1023 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061820.1| cytochrome c [Homo sapiens]. 205 6e-53
Alignment gi|NP_599022.1| nuclear receptor ROR-alpha isoform b [Homo sapi... 51 2e-06
>ref|NP_061820.1| cytochrome c [Homo sapiens].
Length = 105
Score = 205 bits (521), Expect = 6e-53
Identities = 95/105 (90%), Positives = 99/105 (94%)
Frame = +2
Query: 131 MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITW 310
MGDVEKGKKIF+ KC+QCHTVEKGGKHKTGPNLHGLFGRKTGQAPG+SYT ANKNKGI W
Sbjct: 1 MGDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIW 60
Query: 311 GEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE 445
GE+TLMEYLENPKKYIPGTKMIF GIKKK ER DLIAYLKKATNE
Sbjct: 61 GEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE 105
>ref|NP_599022.1| nuclear receptor ROR-alpha isoform b [Homo sapiens].
Length = 556
Score = 50.8 bits (120), Expect = 2e-06
Identities = 30/58 (51%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Frame = -3
Query: 361 RDVLLGILQVLHQCLLSPGDAFVLVGICVRESRSLTCLPP---KETMEVWTSLVLASL 197
RD L GILQ+LHQC+LS GDAFVL G+C S PP KE EV T + A +
Sbjct: 46 RDELFGILQILHQCILSSGDAFVLTGVCC--SWRQNGKPPYSQKEDKEVQTGYMNAQI 101
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,508,789
Number of extensions: 955351
Number of successful extensions: 2265
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2265
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013465
(1023 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 1467 0.0
Sscrofa_Chr09 1445 0.0
Sscrofa_Chr03 1263 0.0
Sscrofa_Chr07 1150 0.0
Sscrofa_Chr14 979 0.0
Sscrofa_ChrX 918 0.0
Sscrofa_Chr12 914 0.0
Sscrofa_Chr15 912 0.0
Sscrofa_Chr13 797 0.0
Sscrofa_Chr01 759 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 1467 bits (740), Expect = 0.0
Identities = 896/951 (94%), Gaps = 6/951 (0%)
Strand = Plus / Minus
Query: 63 agaaagcgggacgtccggcctgcgagtggtggattgtctgttgagctcggcgaaagaacg 122
||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 24071217 agaaagcgggacgtcaggcctgcgagtggtggtttgcctgttgagctcggcgaaagaacg 24071158
Query: 123 attttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccagt 182
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24071157 attttaaaatgggcaatgttgagaagggcaagaagatttttgttcagaagtgtgcccagt 24071098
Query: 183 gccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24071097 gccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttg 24071038
Query: 243 ggcggaagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggca 302
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 24071037 ggcggaagacaggtcaggctcctggattcacttacacagatgccaacaagaacaaaggca 24070978
Query: 303 tcacctggggagaggagacactgatggagtacctggagaatcccaagaagtacatccctg 362
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 24070977 tcacctggggagaggagacactgatggcgtacctggagaatcccaagaagtacatccctg 24070918
Query: 363 gaacaaaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatagctt 422
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 24070917 gaacaaaaatgatcttcgctggcatttagaag---ggagaaagggaagacttgatagctt 24070861
Query: 423 atctgaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaagaccga 482
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 24070860 atctcaaaaaagctactaatgagtaaaagttggccactgccttatttattacaagaccaa 24070801
Query: 483 catgtctcatgacttttatatgtgtaccatatttaaattgatctcatactctagaattca 542
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 24070800 aatgtctcatgacttttacatgtgtaccatatttgaattgatctcatactctagaattca 24070741
Query: 543 gatcatgtatggctgatggaatgtttctgttggatggtcctgatttaaataagattggtt 602
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 24070740 gatcatgtatggctgatggaatgtttctgttggatggtcctgattgaaataagattggtt 24070681
Query: 603 ggtggctaaatgaatatggtcagctgtttgaattttaatattaattctagttcaacaagt 662
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24070680 ggtagctaaatgaatatggtcagctgtttgaattttactattaattctagttcaacaagt 24070621
Query: 663 actatcactgtctttcccttctacagagatggttaaacttgaatgtggagtgttaaactt 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24070620 actatcactgtctttcccttctacagagatggttaaacttgaatgtggagtgttaaactt 24070561
Query: 723 ttcaggaaaatggtgaataccttctcagaacctataggagattggttttatatttagatt 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24070560 ttcaggaaaatggtgaataccttctcagaacctataggagattggttttatatttagatt 24070501
Query: 783 tctataactnnnnnnnnnnnnnnnnnnnnnnnctgagaagatcccttcactgtctcatag 842
||||||||| |||||||||||||||| |||||||||||
Sbjct: 24070500 tctataactggttatattaatatatttaaatactgagaagatcccttccctgtctcatag 24070441
Query: 843 aacagagcaagattcacctgtgtttcaagttgtgttcactagcctgttaaggcatgagcc 902
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24070440 aacagagcaagattcacctgtgtttcaagttgtgttcactagcctgtcaaggcatgagcc 24070381
Query: 903 aatggtaaactgacagtgtcccctttatctttttggtcttaactatgcccattttattta 962
|| |||||||||||| ||||||||||||||||||||||||||||||||| |||| | |||
Sbjct: 24070380 aaaggtaaactgacaatgtcccctttatctttttggtcttaactatgccaatttca-tta 24070322
Query: 963 aaattacctgtatccaaaatactgcccttttacttactggaaaggtatttt 1013
||||||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 24070321 aaattacctatatcaaaaatactg-ccttttactta-ttgaaaggtatttt 24070273
Score = 1195 bits (603), Expect = 0.0
Identities = 685/716 (95%), Gaps = 3/716 (0%)
Strand = Plus / Plus
Query: 298 aggcatcacctggggagaggagacactgatggagtacctggagaatcccaagaagtacat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52037327 aggcatcacctggggagaggagacactgatggagtacctggagaatcccaagaagtacat 52037386
Query: 358 ccctggaacaaaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52037387 ccctggaacaaaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgat 52037446
Query: 418 agcttatctgaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52037447 agcttatctgaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaag 52037506
Query: 478 accgacatgtctcatgacttttatatgtgtaccatatttaaattgatctcatactctaga 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52037507 accgacatgtctcatgacttttatatgtgtaccatatttaaattgatctcatactctaga 52037566
Query: 538 attcagatcatgtatggctgatggaatgtttctgttggatggtcctgatttaaataagat 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52037567 attcagatcatgtatggctgatggaatgtttctgttggatggtcctgatttaaataagat 52037626
Query: 598 tggttggtggctaaatgaatatggtcagctgtttgaattttaatattaattctagttcaa 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52037627 tggttggtggctaaatgaatatggtcagctgtttgaattttaatattaattctagttcaa 52037686
Query: 658 caagtactatcactgtctttcccttctacagagatggttaaacttgaatgtggagtgtta 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52037687 caagtactatcactgtctttcccttctacagagatggttaaacttgaatgtggagtgtta 52037746
Query: 718 aacttttcaggaaaatggtgaataccttctcagaacctataggagattggttttatattt 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52037747 aacttttcaggaaaatggtgaataccttctcagaacctataggagattggttttatattt 52037806
Query: 778 agatttctataactnnnnnnnnnnnnnnnnnnnnnnnctgagaagatcccttcactgtct 837
|||||||||||||| ||||||||||||||||||| |||
Sbjct: 52037807 agatttctataactggttatattaatatatttaaatactgagaagatcccttcactatct 52037866
Query: 838 catagaacagagcaagattcacctgtgtttcaagttgtgttcactagcctgttaaggcat 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52037867 catagaacagagcaagattcacctgtgtttcaagttgtgttcactagcctgttaaggcat 52037926
Query: 898 gagccaatggtaaactgacagtgtcccctttatctttttggtcttaactatgcccatttt 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 52037927 gagccaatggtaaactgacagtgtcccctttatctttttggtcttaactatgccaatttc 52037986
Query: 958 atttaaaattacctgtatccaaaatactgcccttttacttactggaaaggtatttt 1013
| ||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct: 52037987 a-ttagaattacctgtatcgaaaatactg-ccttttacttact-gaaaggtatttt 52038039
Score = 355 bits (179), Expect = 3e-95
Identities = 179/179 (100%)
Strand = Plus / Plus
Query: 122 gattttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52037034 gattttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccag 52037093
Query: 182 tgccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctcttt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52037094 tgccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctcttt 52037153
Query: 242 gggcggaagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaagg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52037154 gggcggaagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaagg 52037212
Score = 234 bits (118), Expect = 8e-59
Identities = 121/122 (99%)
Strand = Plus / Plus
Query: 1 cggagctagttcggttgcaccaacgccggtacataggcgcggaccggcgtgtccttggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52036011 cggagctagttcggttgcaccaacgccggtacataggcgcggaccggcgtgtccttggac 52036070
Query: 61 cgagaaagcgggacgtccggcctgcgagtggtggattgtctgttgagctcggcgaaagaa 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52036071 ctagaaagcgggacgtccggcctgcgagtggtggattgtctgttgagctcggcgaaagaa 52036130
Query: 121 cg 122
||
Sbjct: 52036131 cg 52036132
>Sscrofa_Chr09
|| Length = 153670197
Score = 1445 bits (729), Expect = 0.0
Identities = 863/914 (94%), Gaps = 1/914 (0%)
Strand = Plus / Plus
Query: 62 gagaaagcgggacgtccggcctgcgagtggtggattgtctgttgagctcggcgaaagaac 121
||||||| ||||||||| ||||| ||||||||| ||| ||||||||||||| ||||||||
Sbjct: 40120426 gagaaagtgggacgtccagcctgtgagtggtggcttggctgttgagctcggtgaaagaac 40120485
Query: 122 gattttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccag 181
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 40120486 gattttaaaatgggtgatgttaagaagggcaagaagatttttgttcagaagtgtgcccag 40120545
Query: 182 tgccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctcttt 241
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 40120546 tgccacactgtagaaaagggaggcaagcacaagactggtccaaacctccaaggtctcttt 40120605
Query: 242 gggcggaagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggc 301
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40120606 gggtggaagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggc 40120665
Query: 302 atcacctggggagaggagacactgatggagtacctggagaatcccaagaagtacatccct 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 40120666 atcacctggggagaggagacactgatggagtacctggagaatcccaagaagtacgtacct 40120725
Query: 362 ggaacaaaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatagct 421
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 40120726 ggaacgaagatgatcttcgctggcattaagaagaagggagacagggaagacttgatagct 40120785
Query: 422 tatctgaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaagaccg 481
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 40120786 tatctcaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaagactg 40120845
Query: 482 acatgtctcatgacttttatatgtgtaccatatttaaattgatctcatactctagaattc 541
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 40120846 aaatgtctcatgacttttatatgtgtgccatatttaaattgatctcatactctagaattc 40120905
Query: 542 agatcatgtatggctgatggaatgtttctgttggatggtcctgatttaaataagattggt 601
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 40120906 agatcatgtatggctgatggaatgtttctgttggatgatcctgacttaaataagattggt 40120965
Query: 602 tggtggctaaatgaatatggtcagctgtttgaattttaatattaattctagttcaacaag 661
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 40120966 tggtggctaaatgaatatggtcagctttttgaattttaatattaattctagttcaacaag 40121025
Query: 662 tactatcactgtctttcccttctacagagatggttaaacttgaatgtggagtgttaaact 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40121026 tactatcactgtctttcccttctacagagatggttaaacttgaatgtggagtgttaaact 40121085
Query: 722 tttcaggaaaatggtgaataccttctcagaacctataggagattggttttatatttagat 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40121086 tttcaggaaaatggtgaataccttctcagaacctataggagattggttttatatttagat 40121145
Query: 782 ttctataactnnnnnnnnnnnnnnnnnnnnnnnctgagaagatcccttcactgtctcata 841
|||||||||| ||||||||| ||||||||| |||||||
Sbjct: 40121146 ttctataactgcttatattaatatatttaaatactgagaagaccccttcactatctcata 40121205
Query: 842 gaacagagcaagattcacctgtgtttcaagttgtgttcactagcctgttaaggcatgagc 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40121206 gaacagagcaagattcacctgtgtttcaagttgtgttcactagcctgttaaggcatgagc 40121265
Query: 902 caatggtaaactgacagtgtcccctttatctttttggtcttaactatgcccattttattt 961
||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 40121266 caaaggtaaactgacaatgtcccctttatctttttggtcttaactatgccaatttca-tt 40121324
Query: 962 aaaattacctgtat 975
||||||||||||||
Sbjct: 40121325 aaaattacctgtat 40121338
Score = 1059 bits (534), Expect = 0.0
Identities = 829/931 (89%), Gaps = 3/931 (0%)
Strand = Plus / Plus
Query: 71 ggacgtccggcctgcgagtggtggattgtctgttgagctcggcgaaagaacgattttaaa 130
||||||| |||||||||||| ||||||| || |||||| ||||||||||| | ||
Sbjct: 7819580 ggacgtctggcctgcgagtgaccacttgtctgctgcactcggcaaaagaacgattgttaa 7819639
Query: 131 atgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccagtgccacact 190
||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| |
Sbjct: 7819640 atgggtgatgttgagaagggcaagaggatttttgttcagaagggtgcccagtgacacatt 7819699
Query: 191 gtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttgggcggaag 250
|||||||||||||||||||||| ||||||| |||| | ||| ||||| | ||||||||||
Sbjct: 7819700 gtagaaaagggaggcaagcacaggactggttcaaagcgccacggtctgtgtgggcggaag 7819759
Query: 251 acaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggcatcacctgg 310
|||||||||||| |||||| | |||||||||||||||||||||||||||||||| || ||
Sbjct: 7819760 acaggtcaggctgctggatgcacttacacagatgccaacaagaacaaaggcatccccggg 7819819
Query: 311 ggagaggagacactgatggagtacctggagaatcccaagaagtacatccctggaacaaaa 370
|||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 7819820 ggagaggagacactgaaggagtagctggagaatcccaagaagtacatgcctggaacgaaa 7819879
Query: 371 atgatcttcgctggcattaagaagaagggagaaagggaagacttgatagcttatctgaaa 430
||||||| ||||||||||||||| ||||||||||||||||| || |||||||||| |||
Sbjct: 7819880 gtgatctttgctggcattaagaaggagggagaaagggaagacatggtagcttatctcaaa 7819939
Query: 431 aaagctactaatgagtaaaagttggccaccgccttatttattacaagaccgacatgtctc 490
||||||||| ||||||||||||||| ||| ||||||||||||| ||||| || |||| ||
Sbjct: 7819940 aaagctactgatgagtaaaagttgg-cactgccttatttattataagactgaaatgtgtc 7819998
Query: 491 atgacttttatatgtgtaccatatttaaattgatctcatactctagaattcagatcatgt 550
||||||||||||||||| | | |||||| ||| ||||||| ||||||||||||||||||
Sbjct: 7819999 atgacttttatatgtgtgctgtttttaaactgacctcataccctagaattcagatcatgt 7820058
Query: 551 atggctgatggaatgtttctgttggatggtcctgatttaaataagattggttggtggcta 610
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 7820059 atggctgacggaatgtttctgttggacggtcctgatttaaataagattggttggtagcta 7820118
Query: 611 aatgaatatggtcagctgtttgaattttaatattaattctagttcaacaagtactatcac 670
||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 7820119 aatgaatatggtcggctttttgaatttcagcggtaattctagttcaacaagtactatcac 7820178
Query: 671 tgtctttcccttctacagagatggttaaacttgaatgtggagtgttaaacttttcaggaa 730
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 7820179 tgtctttcccttctacagagatggttaaactcgaatgcggagtgttaaacttttcaggaa 7820238
Query: 731 aatggtgaataccttctcagaacctataggagattggttttatatttagatttctataac 790
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7820239 gatggtgaacaccttctcagaacctataggagactggttttatatttagatttctataac 7820298
Query: 791 tnnnnnnnnnnnnnnnnnnnnnnnctgagaagatcccttcactgtctcatagaacagagc 850
| ||||||||||||||||||||||||||||||||||||
Sbjct: 7820299 tggttatattaatatatttgaatactgagaagatcccttcactgtctcatagaacagagc 7820358
Query: 851 aagattcacctgtgtttcaagttgtgttcactagcctgttaaggcatgagccaatggtaa 910
||||||||||||||||||||| ||| |||||| ||||||||||||||||||| |||||||
Sbjct: 7820359 aagattcacctgtgtttcaagctgtcttcactggcctgttaaggcatgagccgatggtaa 7820418
Query: 911 actgacagtgtcccctttatctttttggtcttaactatgcccattttatttaaaattacc 970
||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||| |
Sbjct: 7820419 actgacaatgtcccctttatctttttggtcttaactatgccaatttca-ttaaaattatc 7820477
Query: 971 tgtatccaaaatactgcccttttacttactg 1001
|||||| |||||| || ||||||||||||||
Sbjct: 7820478 tgtatctaaaatattg-ccttttacttactg 7820507
>Sscrofa_Chr03
|| Length = 144787322
Score = 1263 bits (637), Expect = 0.0
Identities = 844/919 (91%), Gaps = 10/919 (1%)
Strand = Plus / Plus
Query: 63 agaaagcgggacgtccggcctgcgagtggtggattgtctgttgagctcggcgaaagaacg 122
|||||||||||| || ||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct: 115898841 agaaagcgggacatctggcctgcaagtggtggtttgtctgttgagctcggcgaaggaacg 115898900
Query: 123 attttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccagt 182
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 115898901 attttaaaatgggtgatgttgagcagggcaagaagatttttgttcagaagagtgcccagt 115898960
Query: 183 gccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttg 242
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115898961 gccacgctgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttg 115899020
Query: 243 ggcggaagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggca 302
||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 115899021 ggcagaagagaggtcaggctcctggattctcttacccagatgccaacaagaacaaaggca 115899080
Query: 303 tcacctggggagaggagacactgatggagtacctggagaatcccaagaagtacatccctg 362
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 115899081 tcacctggggagaggagacactgatggagtacctggagaattccaag---tacatccctg 115899137
Query: 363 gaacaaaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatagctt 422
||| ||||||||||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 115899138 gaatgaaaatgatctttgctggcatttagaag---ggagaaagggaagacttgatagctt 115899194
Query: 423 atctgaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaagaccga 482
|||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 115899195 atctcaaaaaagctactaatgagtaaaagctggccactgccttatttattacaagaccga 115899254
Query: 483 catgtctcatgacttttatatgtgtaccatatttaaattgatctcatactctagaattca 542
|||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct: 115899255 aatgtctcatgac----atatgtgtaccatagttaaactgatctcatacactagaattca 115899310
Query: 543 gatcatgtatggctgatggaatgtttctgttggatggtcctgatttaaataagattggtt 602
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 115899311 gatcctgtatggctgatggaatgtttctgttggatggtcctgatttaaataagatttgtt 115899370
Query: 603 ggtggctaaatgaatatggtcagctgtttgaattttaatattaattctagttcaacaagt 662
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 115899371 ggtggctaaatgaatatggtcagctttttgaattttaatattaattctagttcaacaagt 115899430
Query: 663 actatcactgtctttcccttctacagagatggttaaacttgaatgtggagtgttaaactt 722
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 115899431 actatcactgactttcccttctacagagatggttaaacttgaatgtggaatgttaaactt 115899490
Query: 723 ttcaggaaaatggtgaataccttctcagaacctataggagattggttttatatttagatt 782
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 115899491 ttcaggaaaatggtgaataccttctcagaacctatgggagattggttttatatttagatt 115899550
Query: 783 tctataactnnnnnnnnnnnnnnnnnnnnnnnctgagaagatcccttcactgtctcatag 842
|| |||||| ||||||||| ||||||||| ||||||||
Sbjct: 115899551 tccataactggttatattaatatatttaaatactgagaagaccccttcactatctcatag 115899610
Query: 843 aacagagcaagattcacctgtgtttcaagttgtgttcactagcctgttaaggcatgagcc 902
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 115899611 aacagagcaagattcacctgtgtttcaagttgtgttcactagcctattaaggcatgagcc 115899670
Query: 903 aatggtaaactgacagtgtcccctttatctttttggtcttaactatgcccattttattta 962
|| |||||||||||| ||||||| ||||||||||||||||||||||||| | ||| |||
Sbjct: 115899671 aaaggtaaactgacaatgtcccccttatctttttggtcttaactatgccaaatttcatta 115899730
Query: 963 aaattacctgtatccaaaa 981
|||||| ||||||| ||||
Sbjct: 115899731 aaattatctgtatcaaaaa 115899749
Score = 454 bits (229), Expect = e-125
Identities = 724/895 (80%), Gaps = 25/895 (2%)
Strand = Plus / Plus
Query: 114 gaaagaacgattttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagt 173
||||||| || || ||| ||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct: 102517710 gaaagaatgacttaaaagtgggtgatgttgagaagggcaagaagattgttgctcaaaagt 102517769
Query: 174 gtgcccagtgccacactgtagaaaagggaggcaag----------------cacaagact 217
||||| ||||||| ||||| | | |||||||||| |||||||||
Sbjct: 102517770 gtgcc-agtgccatcctgtaaagaggggaggcaagactccccatggcctggcacaagact 102517828
Query: 218 ggtccaaacctccatggtctctttgggcggaagacaggtcaggctcctggattctcttac 277
|| ||||| ||||| ||| || |||| ||||||||||| ||| || | | ||||||
Sbjct: 102517829 gggccaaatctccaccatctgttcgggcaaaagacaggtcaagctgttgaactgtcttac 102517888
Query: 278 acagatgccaacaagaacaaaggcatcacctggggagaggagacactgatggagtacctg 337
||||| ||||||||||||||||| || || ||||||||||||| ||||| ||| || ||
Sbjct: 102517889 acagaagccaacaagaacaaagggattacttggggagaggagatgctgatagagcacttg 102517948
Query: 338 gagaatcccaagaagtacatccctggaacaaaaatgatcttcgctggcattaagaagaag 397
|||||||||||||| || | |||||||| |||||| ||||| ||||||||||||| ||
Sbjct: 102517949 gagaatcccaagaactataaccctggaataaaaataatctttgctggcattaaga---ag 102518005
Query: 398 ggagaaagggaagacttgatagcttatctgaaaaaagctactaatgagtaaaagttggcc 457
|||||||||| |||| ||||||||||||| |||||||| |||| ||||||| |||||||
Sbjct: 102518006 ggagaaagggcagacatgatagcttatctcaaaaaagcaactagtgagtaatagttggct 102518065
Query: 458 accgccttatttattacaagaccgacatgtctcatgacttttatatgtgtaccatattta 517
|| ||||||| |||||| || || |||||||||||||||| |||| ||||||||||||
Sbjct: 102518066 ccctccttattggttacaaaacagaaatgtctcatgacttttttatgcgtaccatattta 102518125
Query: 518 aattgatctcatactctagaattcagatcatgtatggctgatggaatgtttctgttggat 577
|||||| |||| || ||||||||||||||||| |||||| |||| | ||||| |||||
Sbjct: 102518126 aattgacctcacacactagaattcagatcatgaatggctaatgggctatttctattggac 102518185
Query: 578 ggtcctgatttaaataagattggttggtggctaaatgaatatggtcag---ctgtttgaa 634
||| |||||||||||||||||| | ||||||||||||||||||||| || ||| ||
Sbjct: 102518186 agtcttgatttaaataagattggcttctggctaaatgaatatggtcagtttcttttttaa 102518245
Query: 635 ttttaata-ttaattctagttcaacaagtactatcactgtctttcccttctacagagatg 693
|||| | ||||||| |||||||||||||||||||| || | || |||| |||||||
Sbjct: 102518246 ttttggcagttaattccagttcaacaagtactatcacagttctccctttctgaagagatg 102518305
Query: 694 gttaaacttgaatgtggagtgttaaacttttcaggaaaatggtgaataccttctcagaac 753
| ||||||||| ||| |||||||| ||||||| |||||||||| ||||||||| |||
Sbjct: 102518306 actgaacttgaataaggaatgttaaacctttcagggaaatggtgaacaccttctcaaaac 102518365
Query: 754 ctataggagattggttttatatttagatttctataactnnnnnnnnnnnnnnnnnnnnnn 813
|||||||||| |||||||||||||||||||||||||||
Sbjct: 102518366 ctataggagactggttttatatttagatttctataactggttatagtaatatatttaaat 102518425
Query: 814 nctgagaagatcccttcactgtctcatagaacagagcaagattcacctgtgtttcaagtt 873
|||||||||||||| ||||||||| |||||||| |||||||||| ||||||||| |||
Sbjct: 102518426 actgagaagatccctgtactgtctcaaagaacagaacaagattcacttgtgtttcaggtt 102518485
Query: 874 gtgttcactagcctgttaaggcatgagccaatggtaaactgacagtgtcccctttatctt 933
||||||| |||||| ||||| || |||| | | |||||||||| ||||| |||||||||
Sbjct: 102518486 gtgttcattagcctattaagacaagagctgaagataaactgacaatgtccactttatctt 102518545
Query: 934 tttggtcttaactatgcccattttatttaaaattacctgtatccaaaatactgcc 988
||| |||| |||| | ||| |||| |||||||| ||||||| |||||| ||||
Sbjct: 102518546 tttagtctcgactaag-ccaatttaattaaaattctctgtatctaaaatattgcc 102518599
Score = 408 bits (206), Expect = e-111
Identities = 411/483 (85%), Gaps = 3/483 (0%)
Strand = Plus / Minus
Query: 516 taaattgatctcatactctagaattcagatcatgtatggctgatggaatgtttctgttgg 575
|||||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||||||
Sbjct: 45444298 taaattgatctcatacactagaattcaggtcatgtatcgctgatgaaatgtttctgttgg 45444239
Query: 576 atggtcctgatttaaataagattggttggtggctaaatgaatatggtcagctgtttgaat 635
|||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct: 45444238 atggtcttgatttaaataagattggttggtggctaaatgaatatg-tcagctttttggat 45444180
Query: 636 tttaatattaattctagttcaacaagtactatcactgtctttcccttctacagagatggt 695
|||| || ||||| ||||||| ||||||||||| | || || ||| ||||||||| |
Sbjct: 45444179 tttagtaataatttcggttcaaccagtactatcaccattttccctttccacagagatgat 45444120
Query: 696 taaacttgaatgtggagtgttaaacttttcaggaaaatggtgaataccttctcagaacct 755
||||||||||||| | |||||||||| |||||||||||||| |||||||| ||||||| |
Sbjct: 45444119 taaacttgaatgtagcgtgttaaactgttcaggaaaatggtaaataccttttcagaactt 45444060
Query: 756 ataggagattggttttatatttagatttctataactnnnnnnnnnnnnnnnnnnnnnnnc 815
|||||||||||||||||||||||||||||||||||| |
Sbjct: 45444059 ataggagattggttttatatttagatttctataactggttatactaacgtatttaaatac 45444000
Query: 816 tgagaagatcccttcactgtctcatagaacagagcaagattcacctgtgtttcaagttgt 875
|||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 45443999 tgagaagatccctttactagctcatagaagagaacaagattcacctgtgtttcaagttgt 45443940
Query: 876 gttcactagcctgttaaggcatgagccaatggtaaactgacagtgtcccctttatctttt 935
|||||||| |||||||| |||||||| | | |||||||| | |||||| ||||||||||
Sbjct: 45443939 gttcactaacctgttaaagcatgagctgaagataaactgaaaatgtcccatttatctttt 45443880
Query: 936 tggtcttaactatgcccattttatttaaaattacctgtatccaaaatactgcccttttac 995
|| ||||||||||||| |||| | ||||||||| ||||||| |||||| || ||||||||
Sbjct: 45443879 tgatcttaactatgccaatttca-ttaaaattatctgtatctaaaatattg-ccttttac 45443822
Query: 996 tta 998
|||
Sbjct: 45443821 tta 45443819
Score = 281 bits (142), Expect = 4e-73
Identities = 296/353 (83%), Gaps = 4/353 (1%)
Strand = Plus / Plus
Query: 629 tttgaattttaatattaattctagttcaacaagtactatcactgtctttcccttctacag 688
||||||||||| || |||| | ||||||||||||||||||||||| | |||||||| ||
Sbjct: 84808211 tttgaattttagtagtaatcccagttcaacaagtactatcactgtttcccccttctatag 84808270
Query: 689 agatggttaaacttgaatgtggagtgttaaacttttcaggaaaatggtgaataccttctc 748
||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 84808271 agatgattaaacttgaatgtggaatgttaaacttttcaggaaaatggtaaataccttctc 84808330
Query: 749 agaacctataggagattggttttatatttagatttctataactnnnnnnnnnnnnnnnnn 808
||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 84808331 agaacctataggagactggttttatatttagatttctataactggttatattaatatatt 84808390
Query: 809 nnnnnnctgagaagatcccttcactgtctcatagaacagagcaagattcacctgtgtttc 868
||||||||| ||||||||| |||||||| ||||||||||| ||| |||||||
Sbjct: 84808391 taaatactgagaagaccccttcactatctcatag---agagcaagatttaccagtgtttc 84808447
Query: 869 aagttgtgttcactagcctgttaaggcatgagccaatggtaaactgacagtgtccccttt 928
||||||||||||||| ||||||||||| ||||| | | ||||||| || ||| || |||
Sbjct: 84808448 aagttgtgttcactaccctgttaaggcgtgagctgaagataaactggcaatgttccattt 84808507
Query: 929 atctttttggtcttaactatgcccattttatttaaaattacctgtatccaaaa 981
||||||||||||||||||||||| |||| | ||||||||| ||||||| ||||
Sbjct: 84808508 atctttttggtcttaactatgccaatttca-ttaaaattatctgtatctaaaa 84808559
>Sscrofa_Chr07
|| Length = 134764511
Score = 1150 bits (580), Expect = 0.0
Identities = 834/920 (90%), Gaps = 6/920 (0%)
Strand = Plus / Plus
Query: 63 agaaagcgggacgtccggcctgcgagtggtggattgtctgttgagctcggcgaaagaacg 122
||||||||| |||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct: 24534450 agaaagcggaacgtccgggctgcgagtggccacttgtctgttgagctcggagaaagaacg 24534509
Query: 123 atttt-aaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccag 181
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24534510 atttttaaaaagggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccag 24534569
Query: 182 tgccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctcttt 241
||||| |||| |||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct: 24534570 tgccatactgcagaaaacagaggcaagcacaagactggtccaaacctccatggtgtgttt 24534629
Query: 242 gggcggaagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggc 301
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 24534630 ggt-ggaagacaggtcaggctcctggattcacttacacagatgccaacaagaacaaaggc 24534688
Query: 302 atcacctggggagaggagacactgatggagtacctggagaatcccaagaagtacatccct 361
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 24534689 atcacctggggagaggagacgctgatggagtacttggagaatcccaagaagtatatccct 24534748
Query: 362 ggaacaaaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatagct 421
||||||| ||||||||| |||||||| | ||||||||||||||||||||||||| |||||
Sbjct: 24534749 ggaacaagaatgatctttgctggcat-aggaagaagggagaaagggaagacttggtagct 24534807
Query: 422 tatctgaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaagaccg 481
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 24534808 tatctcaaaaaagctactaatgagtaaaggttggccaccgccttatttattacaagaccg 24534867
Query: 482 acatgtctcatgacttttatatgtgtaccatatttaaattgatctcatactctagaattc 541
| ||||||||||||||| || |||||||||| ||||||||||||||||| |||||||||
Sbjct: 24534868 aaatgtctcatgactttcat--gtgtaccatagttaaattgatctcatacactagaattc 24534925
Query: 542 agatcatgtatggctgatggaatgtttctgttggatggtcctgatttaaataagattggt 601
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 24534926 agatcatgtatggctgatggaatgtttctgttggatggtcctgatttaactaagattgat 24534985
Query: 602 tggtggctaaatgaatatggtcagctgtttgaattttaatattaattctagttcaacaag 661
|||||||||||||||||||||||||| ||||||||||| || |||||| | |||||||||
Sbjct: 24534986 tggtggctaaatgaatatggtcagctttttgaattttagtagtaattccaattcaacaag 24535045
Query: 662 tactatcactgtctttcccttctacagagatggttaaacttgaatgtggagtgttaaact 721
||||||||| || || |||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 24535046 tactatcacagttttccccttctacagagatgattaaacttgaatgtggagtattaaact 24535105
Query: 722 tttcaggaaaatggtgaataccttctcagaacctataggagattggttttatatttagat 781
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24535106 tttcgggaaaatggtgaataccttctcagaacctataggagattggttttatatttagat 24535165
Query: 782 ttctataactnnnnnnnnnnnnnnnnnnnnnnnctgagaagatcccttcactgtctcata 841
|||||||||| |||||||||||||||||| |||||||
Sbjct: 24535166 ttctataactggttatattaatatatttaaatagtgagaagatcccttcactatctcata 24535225
Query: 842 gaacagagcaagattcacctgtgtttcaagttgtgttcactagcctgttaaggcatgagc 901
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24535226 gaacggagcaagattcacctgtgtttcaagttgtgttcactagcctattaaggcatgagc 24535285
Query: 902 caatggtaaactgacagtgtcccctttatctttttggtcttaactatgcccattttattt 961
| | |||| ||||| |||||||||||||||||||||||||| |||||| |||| | ||
Sbjct: 24535286 tgaagataaattgacaatgtcccctttatctttttggtcttaaatatgccaatttca-tt 24535344
Query: 962 aaaattacctgtatccaaaa 981
||||||| ||||||| ||||
Sbjct: 24535345 aaaattatctgtatctaaaa 24535364
Score = 829 bits (418), Expect = 0.0
Identities = 757/875 (86%), Gaps = 2/875 (0%)
Strand = Plus / Plus
Query: 96 ttgtctgttgagctcggcgaaagaacgattttaaaatgggtgatgttgagaagggcaaga 155
||||||||| ||| || ||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 102175033 ttgtctgttacgctgggtgaaagaatgattttaaaatgggtgatactgagaagggcaaga 102175092
Query: 156 agatttttgttcagaagtgtgcccagtgccacactgtagaaaagggaggcaagcacaaga 215
| |||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||
Sbjct: 102175093 aaatttttgttcagtagtgttcccagtgccatactgtagaaaagggacgcaagcacaaga 102175152
Query: 216 ctggtccaaacctccatggtctctttgggcggaagacaggtcaggctcctggattctctt 275
|||||||||||||||| ||||| |||||| ||| |||||||||||||||||||||| |||
Sbjct: 102175153 ctggtccaaacctccagggtctgtttgggtggacgacaggtcaggctcctggattcgctt 102175212
Query: 276 acacagatgccaacaagaacaaaggcatcacctggggagaggagacactgatggagtacc 335
||||||||||| |||||| ||||||||| || | ||||||||||||| ||||| |||||
Sbjct: 102175213 acacagatgcccgcaagaagaaaggcatcccccgaggagaggagacacggatggcgtacc 102175272
Query: 336 tggagaatcccaagaagtacatccctggaacaaaaatgatcttcgctggcattaagaaga 395
||||||||||||||||| ||||||| ||| || |||||||||| |||||||||||||
Sbjct: 102175273 cggagaatcccaagaagtgcatccctagaaagaagatgatcttcgagggcattaagaaga 102175332
Query: 396 agggagaaagggaagacttgatagcttatctgaaaaaagctactaatgagtaaaagttgg 455
|||||| ||||||||||||| ||||||| || ||||||||||||||||| ||||||||||
Sbjct: 102175333 agggaggaagggaagacttggtagcttagctcaaaaaagctactaatgaataaaagttgg 102175392
Query: 456 ccaccgccttatttattacaagaccgacatgtctcatgacttttatatgtgtaccatatt 515
||||| || ||||||| |||||||||| ||| |||||||||| || || |||| ||||
Sbjct: 102175393 ccaccaccctatttataacaagaccgagatgcttcatgactttcatgtgcataccgtatt 102175452
Query: 516 taaattgatctcatactctagaattcagatcatgtatggctgatggaatgtttctgttgg 575
|||||||||||||||| |||||||||||| ||||| |||||||||||| ||||||||| |
Sbjct: 102175453 taaattgatctcatacactagaattcagaacatgtgtggctgatggaaggtttctgttag 102175512
Query: 576 atggtcctgatttaaataagattggttggtggctaaatgaatatggtcagc-tgtttgaa 634
| ||||||||||| ||||||| ||||| ||||||||||||||||| |||| | ||||||
Sbjct: 102175513 accgtcctgatttatataagatgggttgctggctaaatgaatatggccagcttttttgaa 102175572
Query: 635 ttttaatattaattctagttcaacaagtactatcactgtctttcccttctacagagatgg 694
||||| || |||||| |||||| |||||||| |||||| || ||||||||||||||||
Sbjct: 102175573 ttttagtagtaattccagttcagtaagtactaccactgttttccccttctacagagatga 102175632
Query: 695 ttaaacttgaatgtggagtgttaaacttttcaggaaaatggtgaataccttctcagaacc 754
|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct: 102175633 ttaaacttgaatgtggagggttaaacttttcaggaaggtggtggctaccttctcagaacc 102175692
Query: 755 tataggagattggttttatatttagatttctataactnnnnnnnnnnnnnnnnnnnnnnn 814
||||||||||||||||||||||||||||||| |||||
Sbjct: 102175693 tataggagattggttttatatttagatttctttaactggttatattaatatctttaaatg 102175752
Query: 815 ctgagaagatcccttcactgtctcatagaacagagcaagattcacctgtgtttcaagttg 874
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 102175753 ctgagaagatcccttcactatctcatagaacagagcaagatttacctgtgtttcaagttc 102175812
Query: 875 tgttcactagcctgttaaggcatgagccaatggtaaactgacagtgtcccctttatcttt 934
|| |||| ||||||||||||| ||||| | | |||||||||||||||| || |||||||
Sbjct: 102175813 tggtcacaagcctgttaaggcgtgagctgaagataaactgacagtgtccactctatcttt 102175872
Query: 935 ttggtcttaactatgcccattttatttaaaattac 969
|||| | ||| |||||| |||| | ||||||||||
Sbjct: 102175873 ttggccgtaattatgccaatttca-ttaaaattac 102175906
>Sscrofa_Chr14
|| Length = 153851969
Score = 979 bits (494), Expect = 0.0
Identities = 585/614 (95%), Gaps = 1/614 (0%)
Strand = Plus / Plus
Query: 3 gagctagttcggttgcaccaacgccggtacataggcgcggaccggcgtgtccttggaccg 62
||||||||||||||||||||| || ||| |||||||| ||||||| | |||||||||||
Sbjct: 22086739 gagctagttcggttgcaccaatgcgggtccataggcgtggaccggtgagtccttggacct 22086798
Query: 63 agaaagcgggacgtccggcctgcgagtggtggattgtctgttgagctcggcgaaagaacg 122
|||||| ||||| ||| ||||| | ||||||| ||||||| |||||| ||||||||||||
Sbjct: 22086799 agaaagtgggacatccagcctgtgggtggtggtttgtctgctgagcttggcgaaagaacg 22086858
Query: 123 attttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccagt 182
||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct: 22086859 attttaaaatgggtgatgttgtgaagggcaagaagatttttgttcagatgtgcgcccagt 22086918
Query: 183 gccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttg 242
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22086919 gccatactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttg 22086978
Query: 243 ggcggaagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggca 302
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct: 22086979 ggcggaagacaggtcaggctcctggattttcttaaacagatgccaagaagaacaaaggca 22087038
Query: 303 tcacctggggagaggagacactgatggagtacctggagaatcccaagaagtacatccctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22087039 tcacctggggagaggagacactgatggagtacctggagaatcccaagaagtacatccctg 22087098
Query: 363 gaacaaaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatagctt 422
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22087099 gaacaaaaatgatcttc-ctggcattaagaagaagggagaaagggaagacttgatagctt 22087157
Query: 423 atctgaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaagaccga 482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22087158 atctcaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaagaccga 22087217
Query: 483 catgtctcatgacttttatatgtgtaccatatttaaattgatctcatactctagaattca 542
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 22087218 aatgtctcatgacttttatatgtgtaccatattttaattgatctcatactctagaattca 22087277
Query: 543 gatcatgtatggctgatggaatgtttctgttggatggtcctgatttaaataagattggtt 602
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 22087278 gatcatgtgtggctgatggaatgtttctgttgaatggtcctgatttaaataagatcggtt 22087337
Query: 603 ggtggctaaatgaa 616
||||||||||||||
Sbjct: 22087338 ggtggctaaatgaa 22087351
>Sscrofa_ChrX
|| Length = 144288218
Score = 918 bits (463), Expect = 0.0
Identities = 662/725 (91%), Gaps = 5/725 (0%)
Strand = Plus / Minus
Query: 67 agcgggacgtccggcctgcgagtggtggattgtctgttgagctcggcgaaagaacgattt 126
||||||| |||| || ||||||||| |||||||||| |||| || ||||||||||||
Sbjct: 71041487 agcgggatgtccagcttgcgagtggccacttgtctgttgtgctcagcaaaagaacgattt 71041428
Query: 127 taaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccagtgcca 186
|||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 71041427 taaaatggatgatgttgagaagggtaagaagatttttattcagaagtgtgcccagtgcca 71041368
Query: 187 cactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttgggcg 246
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 71041367 tactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctgttcgggca 71041308
Query: 247 gaagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggcatcac 306
||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct: 71041307 gaagacaggtcaggctcctggattcacttacactgatgccaacaagaacaaaggtatcac 71041248
Query: 307 ctggggagaggagacactgatggagtacctggagaatcccaagaagtacatccctggaac 366
|||||||||| || |||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 71041247 ctggggagagaag---ctgatggagtacctggagaaacacaagaagtacatccctggaac 71041191
Query: 367 aaaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatagcttatct 426
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 71041190 aaaaatgatcttcgctggcattaagaaggcaggagaaagggaagacttggtagcttatct 71041131
Query: 427 gaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaagaccgacatg 486
||||| |||||||||||||||||||| ||||| ||||||||||||||||||| | |||
Sbjct: 71041130 caaaaat-ctactaatgagtaaaagttgaccaccaccttatttattacaagaccaaaatg 71041072
Query: 487 tctcatgacttttatatgtgtaccatatttaaattgatctcatactctagaattcagatc 546
| ||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||
Sbjct: 71041071 tttcatgacttttatatgtgtaccatatttaaatttatctcatacactggaattcagatc 71041012
Query: 547 atgtatggctgatggaatgtttctgttggatggtcctgatttaaataagattggttggtg 606
||||||||||||||||||||||||||| || || |||||||||||||| | |||||||
Sbjct: 71041011 atgtatggctgatggaatgtttctgttagagggctgtgatttaaataagacttgttggtg 71040952
Query: 607 gctaaatgaatatggtcagctgtttgaattttaatattaattctagttcaacaagtacta 666
||||||||||| |||||||| ||||||||||| || |||||| ||||||||||||||||
Sbjct: 71040951 gctaaatgaattcggtcagctttttgaattttagtagtaattccagttcaacaagtacta 71040892
Query: 667 tcactgtctttcccttctacagagatggttaaacttgaatgtggagtgttaaacttttca 726
||||||| || |||||||||||||||| ||||| |||||| ||||||||| || ||||||
Sbjct: 71040891 tcactgttttccccttctacagagatgattaaatttgaatatggagtgtt-aagttttca 71040833
Query: 727 ggaaaatggtgaataccttctcagaacctataggagattggttttatatttagatttcta 786
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71040832 ggaagatggtgaataccttctcagaacctataggagattggttttatatttagatttctg 71040773
Query: 787 taact 791
|||||
Sbjct: 71040772 taact 71040768
Score = 757 bits (382), Expect = 0.0
Identities = 530/578 (91%), Gaps = 1/578 (0%)
Strand = Plus / Plus
Query: 128 aaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccagtgccac 187
||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 63989111 aaaataggtgatgttgagaagggcaagaagatttttattctgaagtgtgcccagtgccat 63989170
Query: 188 actgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttgggcgg 247
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 63989171 actgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctgtttgggcag 63989230
Query: 248 aagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggcatcacc 307
|||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct: 63989231 aagacaggtcaggctcctggattcacttacactgatgccaacaagaacaaaggtatcacc 63989290
Query: 308 tggggagaggagacactgatggagtacctggagaatcccaagaagtacatccctggaaca 367
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 63989291 tggggagaggagacactgatggagtacttggagaatcccaagaagtatatccctggaaca 63989350
Query: 368 aaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatagcttatctg 427
||||| ||||| ||||||||||||||||| ||||||| ||||||||| ||| ||||||
Sbjct: 63989351 aaaattatctttgctggcattaagaagaaacgagaaagagaagacttggtagtttatctc 63989410
Query: 428 aaaaaagctactaatgagtaaaagttggccaccgccttatttattacaagaccgacatgt 487
||||||||||||||||| ||| | ||||||||||||| ||||||||||| || || ||||
Sbjct: 63989411 aaaaaagctactaatgaataatacttggccaccgcctcatttattacaaaactgaaatgt 63989470
Query: 488 ctcatgacttttatatgtgtaccatatttaaattgatctcatactctagaattcagatca 547
| ||||||| ||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 63989471 cccatgactgctatatgtgtaccatatttaaactgatctcatacactggaattcagatca 63989530
Query: 548 tgtatggctgatggaatgtttctgttggatggtcctgatttaaataagattggttggtgg 607
| |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct: 63989531 tccatggctgatggaatgtttctgttggacagtcctgatttaaataaggttggtttgtgg 63989590
Query: 608 ctaaatgaatatggtcagctgtttgaattttaatattaattctagttcaacaagtactat 667
|||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 63989591 ctaaatgaatatggtcagctttttgaattttagtaataattctagttcaacaagtactac 63989650
Query: 668 cactg-tctttcccttctacagagatggttaaacttga 704
||||| | ||||||||||| ||| ||| ||||| ||||
Sbjct: 63989651 cactgttttttcccttctaaagaaatgattaaatttga 63989688
Score = 230 bits (116), Expect = 1e-57
Identities = 490/616 (79%), Gaps = 26/616 (4%)
Strand = Plus / Minus
Query: 265 tggattctcttacacagatgccaacaagaacaaaggcatcacctggggagaggagacact 324
|||||||| |||||||| ||||| ||||||||||||| ||||| || |||||||| |||
Sbjct: 19361757 tggattctgttacacaggtgccagtaagaacaaaggcaacacctaggaagaggagatact 19361698
Query: 325 gatggagtacctggagaatcccaagaag-tacatccctggaacaaaaatgatcttcgctg 383
|||||||||| || ||||| | || | | |||| |||||||||||| |||| | ||||
Sbjct: 19361697 gatggagtacgtgcagaatagctagtatatccatcactggaacaaaaaggatcctagctg 19361638
Query: 384 ---gcattaagaagaagggag---aaagggaagact-----tgatagcttatctgaaaaa 432
|||||| |||||||||| |||||| ||||| || |||||||||| |||||
Sbjct: 19361637 ctggcattaggaagaagggaagaaaaagggcagactcagcgtggtagcttatctcaaaaa 19361578
Query: 433 agctactaatgagtaaaagttggccaccgccttatttattacaagaccgacatgtctcat 492
|||||||||||||||| | ||| |||||||||||||||| | | ||| | |||||||||
Sbjct: 19361577 agctactaatgagtaatcgatggtcaccgccttatttattcccaaacccaaatgtctcat 19361518
Query: 493 gacttttatatgtgtaccatatttaaattgatctcatactctagaattcagatcatgtat 552
|||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct: 19361517 gactttcatatgtgtaccatatttaaattgatctcatacacaagaattcagatcatgaat 19361458
Query: 553 ggctgatggaatgtttctgttggatggtcctgatttaaataagattggttggtggctaaa 612
||||||||||||||| |||| | | |||||| | | ||||||| |||||||
Sbjct: 19361457 ggctgatggaatgtt--tgtt--aaagccctgat----agcaaattggtttgtggcta-- 19361408
Query: 613 tgaatatggtcagctgtttgaattttaatattaattctagttcaacaagtactatcactg 672
||||||||||||| || |||||||| || ||| | ||||||||| ||||||||||||
Sbjct: 19361407 --aatatggtcagcttttggaattttagtagtaactgcagttcaacaggtactatcactg 19361350
Query: 673 tctttcccttctacagagatggttaaacttgaatgtggagtgttaaacttttcaggaaaa 732
| || |||| || | |||| |||| ||| ||| || ||||||| || ||||||| |
Sbjct: 19361349 ttttcccctcct--aacgatgattaatcttcaatcaagaatgttaaatttctcaggaaga 19361292
Query: 733 tggtgaataccttctcagaacctataggagattggttttatatttagatttctataactn 792
|| ||||||||| |||| ||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 19361291 tgatgaatacctcctcaatgcctgtaggagattggttttatattcagatttctatatctg 19361232
Query: 793 nnnnnnnnnnnnnnnnnnnnnnctgagaagatcccttcactgtctcatagaacagagcaa 852
|||||| |||||||||||||||||||||||||||||||
Sbjct: 19361231 gttatatcactagagttaaaaactgagacgatcccttcactgtctcatagaacagagcaa 19361172
Query: 853 gattcacctgtgtttc 868
||||||||||||||||
Sbjct: 19361171 gattcacctgtgtttc 19361156
Score = 170 bits (86), Expect = 1e-39
Identities = 128/142 (90%)
Strand = Plus / Minus
Query: 815 ctgagaagatcccttcactgtctcatagaacagagcaagattcacctgtgtttcaagttg 874
||||||||||||||||||| |||||||||| |||||||| ||||||| || ||||| |||
Sbjct: 71040743 ctgagaagatcccttcactatctcatagaatagagcaaggttcacctttgcttcaaattg 71040684
Query: 875 tgttcactagcctgttaaggcatgagccaatggtaaactgacagtgtcccctttatcttt 934
||||||||||||||||||||||||||| | | |||||||||| || || ||||||||||
Sbjct: 71040683 tgttcactagcctgttaaggcatgagctgaagataaactgacaatgcccactttatcttt 71040624
Query: 935 ttggtcttaactatgcccattt 956
||||||||||||||||| ||||
Sbjct: 71040623 ttggtcttaactatgccaattt 71040602
Score = 153 bits (77), Expect = 2e-34
Identities = 98/105 (93%)
Strand = Plus / Plus
Query: 687 agagatggttaaacttgaatgtggagtgttaaacttttcaggaaaatggtgaataccttc 746
||||||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 63989947 agagatgattaagtttgaatatggagtgttaaacttttcaggaagatggtgaataccttc 63990006
Query: 747 tcagaacctataggagattggttttatatttagatttctataact 791
| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 63990007 taaaaacctataggagattggttttatatttagatttctataact 63990051
Score = 145 bits (73), Expect = 5e-32
Identities = 236/289 (81%), Gaps = 11/289 (3%)
Strand = Plus / Plus
Query: 369 aaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatagcttatctga 428
||||| |||| ||||||||||||||| ||||||| || ||||||||||||||| || |
Sbjct: 102814156 aaatgctctttgctggcattaagaag---ggagaaaaggcagacttgatagcttaactca 102814212
Query: 429 aaaaagctactaatgagtaaa-agttggccaccgccttatttattacaagaccga----- 482
|||||||||||||||||| || |||||||||| |||||||||| | || || ||
Sbjct: 102814213 aaaaagctactaatgagttaatagttggccactgccttatttaatgcagaacagaagtag 102814272
Query: 483 --catgtctcatgacttttatatgtgtaccatatttaaattgatctcatactctagaatt 540
|||| |||||||||||| ||| |||||||||||||| |||||||||||| | ||||||
Sbjct: 102814273 ctcatggctcatgacttttttatatgtaccatatttaagttgatctcatacacgagaatt 102814332
Query: 541 cagatcatgtatggctgatggaatgtttctgttggatggtcctgatttaaataagattgg 600
||||||| | ||||||||| |||| |||| ||||| ||| || ||| ||||||| |
Sbjct: 102814333 cagatcacgaatggctgatagaatatttcctttggacagtcatggcttacataagataag 102814392
Query: 601 ttggtggctaaatgaatatggtcagctgtttgaattttaatattaattc 649
| |||||| |||||||||| |||||| | ||| |||| ||| ||||||
Sbjct: 102814393 cttgtggctcaatgaatatgatcagctttatgatttttgatagtaattc 102814441
Score = 133 bits (67), Expect = 2e-28
Identities = 115/130 (88%), Gaps = 7/130 (5%)
Strand = Plus / Plus
Query: 827 cttcactgtctcatagaacagagcaagattcacctgtgtttcaagttgtgttcactagcc 886
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 63990105 cttcactgtctcatagaacagagcaagattcacctgtgtttcaagtagtgttcactagcc 63990164
Query: 887 tgttaaggcatgagccaatggtaaactgacagtgtcccctttatctttttggtcttaact 946
|||||||| | |||| |||||||||| ||| |||||||||||| |||||||||
Sbjct: 63990165 tgttaaggtaagagc------taaactgacaatgttgtctttatcttttt-gtcttaact 63990217
Query: 947 atgcccattt 956
||||| ||||
Sbjct: 63990218 atgccaattt 63990227
Score = 125 bits (63), Expect = 5e-26
Identities = 118/135 (87%), Gaps = 1/135 (0%)
Strand = Plus / Plus
Query: 251 acaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggca-tcacctg 309
||||||||| | ||||||||||||| |||||||||||||||||| || ||| |||||||
Sbjct: 102813675 acaggtcagacccctggattctcttgtacagatgccaacaagaactaaagcaatcacctg 102813734
Query: 310 gggagaggagacactgatggagtacctggagaatcccaagaagtacatccctggaacaaa 369
||||||||||| ||||||||||| ||||| |||||| ||||||||||||||| ||| |
Sbjct: 102813735 gggagaggagatgctgatggagtatttggagtatcccaggaagtacatccctgggacaga 102813794
Query: 370 aatgatcttcgctgg 384
|||| |||| |||||
Sbjct: 102813795 aatgctctttgctgg 102813809
Score = 123 bits (62), Expect = 2e-25
Identities = 122/142 (85%)
Strand = Plus / Minus
Query: 815 ctgagaagatcccttcactgtctcatagaacagagcaagattcacctgtgtttcaagttg 874
|||||| || || ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 136976314 ctgagacgaacctttcactgtctcatagaacagagcaagattcatctatgtttcaagttg 136976255
Query: 875 tgttcactagcctgttaaggcatgagccaatggtaaactgacagtgtcccctttatcttt 934
|||||| |||||||| |||||| | || | | ||||||| || |||| ||||||||||
Sbjct: 136976254 tgttcattagcctgtaaaggcaagggctgaagataaactgccaaagtcctctttatcttt 136976195
Query: 935 ttggtcttaactatgcccattt 956
||| |||||||| |||| ||||
Sbjct: 136976194 ttgatcttaactgtgccaattt 136976173
Score = 75.8 bits (38), Expect = 4e-11
Identities = 72/82 (87%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 155 aagatttttgttcagaagtgtgcccagtgccacactgtagaaaagggaggcaagcacaa- 213
|||||||||| || ||||||| |||||||||| ||||| ||||| |||||||||| ||
Sbjct: 19361840 aagatttttgctctgaagtgtacccagtgccatactgtggaaaacagaggcaagcataaa 19361781
Query: 214 gactggtccaaacctccatggt 235
|||||| |||||||||||||||
Sbjct: 19361780 gactgggccaaacctccatggt 19361759
Score = 63.9 bits (32), Expect = 2e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 732 atggtgaataccttctcagaacctataggagattggttttatatttagatttctataact 791
||||||| |||| ||||| |||||||||||||||| |||||||||||| || |||||||
Sbjct: 102814631 atggtgactaccatctcaaaacctataggagattgagtttatatttagagttatataact 102814690
Score = 58.0 bits (29), Expect = 1e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 99 tctgttgagctcggcgaaagaacgattttaaaatgggtgatgttg 143
||||||||||| |||||||||| ||||| ||||| ||||||||||
Sbjct: 63988786 tctgttgagcttggcgaaagaatgatttaaaaataggtgatgttg 63988830
>Sscrofa_Chr12
|| Length = 63588571
Score = 914 bits (461), Expect = 0.0
Identities = 839/969 (86%), Gaps = 14/969 (1%)
Strand = Plus / Plus
Query: 31 acataggcgcggaccggcgtgtccttggaccgagaaagcgggacgtccggcctgcgagtg 90
||||||| ||||||| ||||||||||||||| |||||||||||| || ||||||||||||
Sbjct: 49297635 acataggtgcggacccgcgtgtccttggacctagaaagcgggacatctggcctgcgagtg 49297694
Query: 91 gtggattgtctgttgagctcggcgaaagaacgattttaaaatgggtgatgttgagaaggg 150
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 49297695 gccacttgtctgttgagctcggcaaaagaacgattttaaaatgggtgatgttgagaaggg 49297754
Query: 151 caagaagatttttgttcagaagtgtgcccagtgccacactgtagaaaagggaggcaagca 210
||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 49297755 caagaaggtctttgttcagaagggtgcccagtgccacactgtagaaaagggaggcaagca 49297814
Query: 211 caagactggtccaaacctccatggtctctttgggcggaagacaggtcaggctcctggatt 270
|||||| || ||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 49297815 caagacgggaccaaacctccatggtctgtttgggcagaagacaggtcaggctcctggatt 49297874
Query: 271 ctcttacacagatgccaacaagaacaaaggcatcacctggggagaggagacactgatgga 330
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 49297875 cacttacacagatgccaacaagcacaaaggcatcccctggggagaggagacactgctgga 49297934
Query: 331 gtacctggagaatcccaagaagtacatccctggaacaaaaatgatcttcgctggcattaa 390
|| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 49297935 acacttggagaatcccaagaagtacatccctggaacgaaaatggtcttcgctggcattaa 49297994
Query: 391 gaagaagggagaaagggaagacttgatagcttatctgaaaaaagctactaatgagtaaaa 450
|| | ||||||||||||| |||||| |||||| ||| |||||||||||| |||||||||
Sbjct: 49297995 gacggagggagaaagggacgacttggtagcttgtctcaaaaaagctactcctgagtaaaa 49298054
Query: 451 gttggccaccgccttatttattacaagaccgacatgtctcatgacttttatatgtgtacc 510
||||||||||||| | || |||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 49298055 gttggccaccgccctgttcattacaagaccgacatgtgtcatgacttttatgtgtgtacc 49298114
Query: 511 atatttaaattgatctcatactctagaattcagatcatgtatggctgatggaatgtttct 570
||||||||| ||||||||||| || || |||||| || |||||||||||
Sbjct: 49298115 atatttaaactgatctcatacactggacttcaga--at---------tcggaatgtttct 49298163
Query: 571 gttggatggtcctgatttaaataagattggttggtggctaaatgaatatggtcagctgtt 630
||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||
Sbjct: 49298164 gttggatggtcctgatttaaatacggttggttggtggctaaatgaatgcggtcagctttt 49298223
Query: 631 tgaattttaatattaattctagttcaacaagtactatcactgtctttcccttctacagag 690
|| |||||| || |||||| || | || |||||| | ||| ||| |||| ||||||||
Sbjct: 49298224 tggattttagtagtaattccagctgcacgagtactggcgctgccttcccctcctacagag 49298283
Query: 691 atggttaaacttgaatgtggagtgttaaacttttcaggaaaatggtgaataccttctcag 750
|||||||||| || ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 49298284 atggttaaacgtgcgtgtggagtgttcaacttttcaggaaaatggtgactaccttctcag 49298343
Query: 751 aacctataggagattggttttatatttagatttctataactnnnnnnnnnnnnnnnnnnn 810
||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 49298344 aacctataggagactggtttcacatttagatttctataactggttgtacgaatatattta 49298403
Query: 811 nnnnctgagaagatcccttcactgtctcatagaacagagcaagattcacctgtgtttcaa 870
|||||| |||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 49298404 aatactgagacgatccctttgctatctcatagaacagagcaagattctcctgtgtttcaa 49298463
Query: 871 gttgtgttc-actagcctgttaaggcatgagccaatggtaaactgacagtgtccccttta 929
||||||||| ||||||||| ||||||| |||| | | |||||||||||||||||||||
Sbjct: 49298464 gttgtgttcaactagcctggtaaggcacgagctgaagagaaactgacagtgtccccttta 49298523
Query: 930 tctttttggtcttaactatgcccattttatttaaaattacctgtatccaaaatactgccc 989
||||||| ||||||||||||| |||| | ||||||| | ||| ||| ||||| ||| ||
Sbjct: 49298524 gctttttgatcttaactatgccaatttca-ttaaaatcatctggatctaaaatgctg-cc 49298581
Query: 990 ttttactta 998
|||||||||
Sbjct: 49298582 ttttactta 49298590
Score = 765 bits (386), Expect = 0.0
Identities = 711/826 (86%), Gaps = 12/826 (1%)
Strand = Plus / Plus
Query: 127 taaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccagtgcca 186
|||||||||||| ||||||||||||||||| | |||||||||||| |||||||||||||
Sbjct: 50570209 taaaatgggtgaccttgagaagggcaagaaggtctttgttcagaagggtgcccagtgcca 50570268
Query: 187 cactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttgggcg 246
|||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||
Sbjct: 50570269 cactgtagaaaagggaggcaagcacatgacggggccaaacctccatggtctgtttgggca 50570328
Query: 247 gaagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggcatcac 306
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 50570329 gaagacaggtcaggctcctggattcacttacacagatgccaacaagcacaaaggcatccc 50570388
Query: 307 ctggggagaggagacactgatggagtacctggagaatcccaagaagtacatccctggaac 366
||||||||||||||||||| |||| || ||||||||||||||||||||||| ||| |||
Sbjct: 50570389 ctggggagaggagacactgctggaacacttggagaatcccaagaagtacatctctgaaac 50570448
Query: 367 aaaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatagcttatct 426
||||||| || ||||||||||||||| | |||||||||| || |||||| |||||| |||
Sbjct: 50570449 aaaaatggtcctcgctggcattaagacggagggagaaagagacgacttggtagcttgtct 50570508
Query: 427 gaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaagaccgacatg 486
|||||||||||| |||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 50570509 caaaaaagctactcctgagtaaaagttggccaccgccctgttcattacaagaccgacatg 50570568
Query: 487 tctcatgacttttatatgtgtaccatatttaaattgatctcatactctagaattcagatc 546
| ||||||||||||| ||||||||||||||||| ||||||||||| || || ||||||
Sbjct: 50570569 tgtcatgacttttatgtgtgtaccatatttaaactgatctcatacactggacttcaga-- 50570626
Query: 547 atgtatggctgatggaatgtttctgttggatggtcctgatttaaataagattggttggtg 606
|| |||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 50570627 at---------tcggaatgtttctgttggatggtcctgatttaaatacggttggttggtg 50570677
Query: 607 gctaaatgaatatggtcagctgtttgaattttaatattaattctagttcaacaagtacta 666
||||||||||| |||||||| ||||||||||| || |||||| || | || |||||||
Sbjct: 50570678 gctaaatgaatgcggtcagctttttgaattttagtagtaattccagctgcacgagtacta 50570737
Query: 667 tcactgtctttcccttctacagagatggttaaacttgaatgtggagtgttaaacttttca 726
| ||| ||| | || |||||||||||||||||| ||| || ||||||||||||||||||
Sbjct: 50570738 gcgctgccttcctctcctacagagatggttaaacgtgagtgcggagtgttaaacttttca 50570797
Query: 727 ggaaaatggtgaataccttctcagaacctataggagattggttttatatttagatttcta 786
||||||||||| |||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct: 50570798 ggaaaatggtgcctaccttctcagaacctataggagactggtttcacatttagatttcta 50570857
Query: 787 taactnnnnnnnnnnnnnnnnnnnnnnnctgagaagatcccttcactgtctcatagaaca 846
||||| |||||| |||||||| || ||||||||||||
Sbjct: 50570858 taactggttatatgattatatttaaatactgagatgatccctttgctatctcatagaaca 50570917
Query: 847 gagcaagattcacctgtgtttcaagttgtgttc-actagcctgttaaggcatgagccaat 905
||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |
Sbjct: 50570918 gagcaagattcacctgtgtttcaagttgtgttcaactagcctggtaaggcacgagctgaa 50570977
Query: 906 ggtaaactgacagtgtcccctttatctttttggtcttaactatgcc 951
| ||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 50570978 gagaaactgacagtgtcccctttagctttttgatcttaactatgcc 50571023
>Sscrofa_Chr15
|| Length = 157681621
Score = 912 bits (460), Expect = 0.0
Identities = 629/684 (91%), Gaps = 1/684 (0%)
Strand = Plus / Minus
Query: 109 tcggcgaaagaacgattttaaaatgggtgatgttgagaagggcaagaagattttt-gttc 167
|||| |||||||| || |||||||||||||| | ||||||||||||||||||||| ||||
Sbjct: 125789389 tcggtgaaagaacaatattaaaatgggtgatatggagaagggcaagaagattttttgttc 125789330
Query: 168 agaagtgtgcccagtgccacactgtagaaaagggaggcaagcacaagactggtccaaacc 227
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125789329 agatgtgtgcccagtgccacactgtagaaaagggaggcaagcacaagactggtccaaacc 125789270
Query: 228 tccatggtctctttgggcggaagacaggtcaggctcctggattctcttacacagatgcca 287
|| ||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||
Sbjct: 125789269 tcaatggtctgtttgggtggaagacaggtcagcttcctggattcacttacacagatgcca 125789210
Query: 288 acaagaacaaaggcatcacctggggagaggagacactgatggagtacctggagaatccca 347
| ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 125789209 ataagaacaaaggcatctcctggggagaggacacactgatggagtatttggagaatccct 125789150
Query: 348 agaagtacatccctggaacaaaaatgatcttcgctggcattaagaagaagggagaaaggg 407
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 125789149 agaagtacatccctggaacaaaaatgatcttcactggcattaagaagaagagagaaaggg 125789090
Query: 408 aagacttgatagcttatctgaaaaaagctactaatgagtaaaagttggccaccgccttat 467
|| |||| |||||||| | ||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 125789089 aaaactttgtagcttatttcaaaaaagctgctaatgagtaaaagttggccaccaccttat 125789030
Query: 468 ttattacaagaccgacatgtctcatgacttttatatgtgtaccatatttaaattgatctc 527
|||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||
Sbjct: 125789029 ttattacaagaccggaatgtctcataacttttatatgtgtatcatatttaaatcgatctc 125788970
Query: 528 atactctagaattcagatcatgtatggctgatggaatgtttctgttggatggtcctgatt 587
|||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||
Sbjct: 125788969 atacactagaattcagatcatgtttggctgatggaatgtttctgttggacggtcctggtt 125788910
Query: 588 taaataagattggttggtggctaaatgaatatggtcagctgtttgaattttaatattaat 647
|| |||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct: 125788909 taggtaagattggttggtggctaaatgaatatggtcagctttttgaattttagtagtaat 125788850
Query: 648 tctagttcaacaagtactatcactgtctttcccttctacagagatggttaaacttgaatg 707
|| |||||||||||||| |||||||| || |||||||||||||||| ||||||||||||
Sbjct: 125788849 tccagttcaacaagtacgatcactgttttccccttctacagagatgattaaacttgaata 125788790
Query: 708 tggagtgttaaacttttcaggaaaatggtgaataccttctcagaacctataggagattgg 767
|||| ||||||||||||||||||||||| |||||||||||| ||| || ||||||| ||
Sbjct: 125788789 tggaacgttaaacttttcaggaaaatggtcaataccttctcaaaacttaaaggagatggg 125788730
Query: 768 ttttatatttagatttctataact 791
||||||||||||||||||||||||
Sbjct: 125788729 ttttatatttagatttctataact 125788706
Score = 912 bits (460), Expect = 0.0
Identities = 629/684 (91%), Gaps = 1/684 (0%)
Strand = Plus / Plus
Query: 109 tcggcgaaagaacgattttaaaatgggtgatgttgagaagggcaagaagatttt-tgttc 167
|||| |||||||| || |||||||||||||| | |||||||||||||||||||| |||||
Sbjct: 125844632 tcggtgaaagaacaatattaaaatgggtgatatggagaagggcaagaagattttttgttc 125844691
Query: 168 agaagtgtgcccagtgccacactgtagaaaagggaggcaagcacaagactggtccaaacc 227
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125844692 agatgtgtgcccagtgccacactgtagaaaagggaggcaagcacaagactggtccaaacc 125844751
Query: 228 tccatggtctctttgggcggaagacaggtcaggctcctggattctcttacacagatgcca 287
|| ||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||
Sbjct: 125844752 tcaatggtctgtttgggtggaagacaggtcagcttcctggattcacttacacagatgcca 125844811
Query: 288 acaagaacaaaggcatcacctggggagaggagacactgatggagtacctggagaatccca 347
| ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 125844812 ataagaacaaaggcatctcctggggagaggacacactgatggagtatttggagaatccct 125844871
Query: 348 agaagtacatccctggaacaaaaatgatcttcgctggcattaagaagaagggagaaaggg 407
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 125844872 agaagtacatccctggaacaaaaatgatcttcactggcattaagaagaagagagaaaggg 125844931
Query: 408 aagacttgatagcttatctgaaaaaagctactaatgagtaaaagttggccaccgccttat 467
|| |||| |||||||| | ||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 125844932 aaaactttgtagcttatttcaaaaaagctgctaatgagtaaaagttggccaccaccttat 125844991
Query: 468 ttattacaagaccgacatgtctcatgacttttatatgtgtaccatatttaaattgatctc 527
|||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||
Sbjct: 125844992 ttattacaagaccggaatgtctcataacttttatatgtgtatcatatttaaatcgatctc 125845051
Query: 528 atactctagaattcagatcatgtatggctgatggaatgtttctgttggatggtcctgatt 587
|||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||
Sbjct: 125845052 atacactagaattcagatcatgtttggctgatggaatgtttctgttggacggtcctggtt 125845111
Query: 588 taaataagattggttggtggctaaatgaatatggtcagctgtttgaattttaatattaat 647
|| |||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct: 125845112 taggtaagattggttggtggctaaatgaatatggtcagctttttgaattttagtagtaat 125845171
Query: 648 tctagttcaacaagtactatcactgtctttcccttctacagagatggttaaacttgaatg 707
|| |||||||||||||| |||||||| || |||||||||||||||| ||||||||||||
Sbjct: 125845172 tccagttcaacaagtacgatcactgttttccccttctacagagatgattaaacttgaata 125845231
Query: 708 tggagtgttaaacttttcaggaaaatggtgaataccttctcagaacctataggagattgg 767
|||| ||||||||||||||||||||||| |||||||||||| ||| || ||||||| ||
Sbjct: 125845232 tggaacgttaaacttttcaggaaaatggtcaataccttctcaaaacttaaaggagatggg 125845291
Query: 768 ttttatatttagatttctataact 791
||||||||||||||||||||||||
Sbjct: 125845292 ttttatatttagatttctataact 125845315
Score = 779 bits (393), Expect = 0.0
Identities = 741/866 (85%), Gaps = 29/866 (3%)
Strand = Plus / Minus
Query: 123 attttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccagt 182
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 105548834 attttaaaatgggcgatgttgagaagggcaaggagatttttgttcagaagtgtgcccggt 105548775
Query: 183 gccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttg 242
|||| | || ||||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct: 105548774 gccatattgcagaaaagggaggcaagcacaagactggtccaaatctctctggtctgtttg 105548715
Query: 243 ggcggaagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggca 302
||| ||||||||| ||| ||||||||||| |||||||| | | |||||||||||
Sbjct: 105548714 ggcagaagacaggccagactcctggattcacttacacaaa-------atgaacaaaggca 105548662
Query: 303 tcacctggggagaggagacactgatggagtacctggagaatcccaagaagtacatccctg 362
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 105548661 tcacctggggagaggagacactgatggagtacctggagattcccaagaagtacattcctg 105548602
Query: 363 gaacaaaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatagctt 422
||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |||
Sbjct: 105548601 gaacaaaaatgatcttcgcagacattaagaagaagggagaaagggaagacttggtggctc 105548542
Query: 423 atctgaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaagaccga 482
| |||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 105548541 a-----------------atgagtaaaatttggccaccaccttatttattacaagaccga 105548499
Query: 483 catgtctcatgacttttatatgtgtaccatatttaaattgatctcatactctagaattca 542
|||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct: 105548498 aatgtctcatgacttttatatgtgtaccatatttaaattaatctcacacactagaattca 105548439
Query: 543 gatcatgtatggctgatggaatgtttctgttggatggtcctgatttaaataagattggtt 602
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 105548438 gatcatgtatggctgatggaatgtttctgttgagaagtcctgatttaaataagattggtt 105548379
Query: 603 ggtggctaaatgaatatggtcagctgtttgaattttaatattaattctagttcaacaagt 662
|||| |||||||||||||||||||| |||||||||||||| |||| | ||||||||||||
Sbjct: 105548378 ggtgactaaatgaatatggtcagctttttgaattttaataataatcccagttcaacaagt 105548319
Query: 663 actatcactgtctttcccttctacagagatggttaaacttgaatgtggagtgttaaactt 722
| ||||||||| ||||| || ||||||||| |||||||||||| |||| |||||| |||
Sbjct: 105548318 aatatcactgtttttcctgtcaacagagatgattaaacttgaatatggaatgttaagctt 105548259
Query: 723 ttcaggaaaatggtgaataccttctcagaacctataggagattggttttatatttagatt 782
||||||||||||| || || ||| | ||||||||||||||||| |||||||||| ||
Sbjct: 105548258 ttcaggaaaatggcgacta---tcttaaaacctataggagattggctttatatttatttt 105548202
Query: 783 tctataactnnnnnnnnnnnnnnnnnnnnnnnctgagaagatcccttcactgtctcatag 842
|||||||| |||||| || ||||||||||||||||
Sbjct: 105548201 cctataactggttatattaatatattgaaatactgagacaattccttcactgtctcata- 105548143
Query: 843 aacagagcaagattcacctgtgtttcaagttgtgttcactagcctgttaaggcatgagcc 902
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105548142 aatagagcaagattcacctgtgtttcaagttgtgttcactagcctgttaaggcatgagct 105548083
Query: 903 aatggtaaactgacagtgtcccctttatctttttggtcttaactatgcccattttattta 962
| |||||||||| | ||||| ||||||||||||||||| ||||||| ||| ||| |||
Sbjct: 105548082 gaaggtaaactgaaaatgtccactttatctttttggtctcaactatg-ccagtttcatta 105548024
Query: 963 aaattacctgtatccaaaatactgcc 988
||||| ||||||| |||||| ||||
Sbjct: 105548023 aaattctctgtatctaaaataatgcc 105547998
Score = 307 bits (155), Expect = 6e-81
Identities = 251/283 (88%)
Strand = Plus / Plus
Query: 114 gaaagaacgattttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagt 173
|||| ||| |||| |||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 71624841 gaaaaaacaatttaaaaatgggtgatgttgagaaaggcaagaatatttttgttcagaaat 71624900
Query: 174 gtgcccagtgccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatg 233
|| |||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||
Sbjct: 71624901 gttcccagtgccatactgtggaaaagggaggcaagcacacatctggcccaaacctccatg 71624960
Query: 234 gtctctttgggcggaagacaggtcaggctcctggattctcttacacagatgccaacaaga 293
|||| ||||| ||||||||||||| |||||||||||| ||||| ||||||||| ||| |
Sbjct: 71624961 gtctgtttggatggaagacaggtcacgctcctggattcacttactcagatgccaccaaaa 71625020
Query: 294 acaaaggcatcacctggggagaggagacactgatggagtacctggagaatcccaagaagt 353
||||||||| |||| |||| ||||||||||||||||||||| |||| |||||||| ||||
Sbjct: 71625021 acaaaggcaacaccaggggtgaggagacactgatggagtacttggaaaatcccaataagt 71625080
Query: 354 acatccctggaacaaaaatgatcttcgctggcattaagaagaa 396
|||||| |||| |||||| ||||||| ||||||||||| ||||
Sbjct: 71625081 acatccttggagcaaaaaggatcttcactggcattaaggagaa 71625123
Score = 159 bits (80), Expect = 4e-36
Identities = 160/184 (86%), Gaps = 2/184 (1%)
Strand = Plus / Minus
Query: 815 ctgagaagatcccttcactgtctcatagaacagagcaagattcacctgtgtttcaagttg 874
||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct: 125788684 ctgagaagatcccttcactgtctcaccaaacagagcaaaatgcacctgtgtttcaagttg 125788625
Query: 875 tgttcactagcctgttaaggcatgagccaatggtaaactgacagtgtcccctttatcttt 934
||||||||||||||||||||||||| | | | ||||||| || || || ||||||||||
Sbjct: 125788624 tgttcactagcctgttaaggcatgacctgaagataaactggcaatgaccactttatcttt 125788565
Query: 935 ttggtcttaactatgcccattttatttaaaattacctgtatccaaaatactgccctttta 994
||||||||||||| || |||| | |||||||| ||||||| ||| ||||| |||||||
Sbjct: 125788564 ttggtcttaactacaccaatttca-ttaaaattctctgtatctaaagtactg-cctttta 125788507
Query: 995 ctta 998
||||
Sbjct: 125788506 ctta 125788503
Score = 159 bits (80), Expect = 4e-36
Identities = 160/184 (86%), Gaps = 2/184 (1%)
Strand = Plus / Plus
Query: 815 ctgagaagatcccttcactgtctcatagaacagagcaagattcacctgtgtttcaagttg 874
||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct: 125845337 ctgagaagatcccttcactgtctcaccaaacagagcaaaatgcacctgtgtttcaagttg 125845396
Query: 875 tgttcactagcctgttaaggcatgagccaatggtaaactgacagtgtcccctttatcttt 934
||||||||||||||||||||||||| | | | ||||||| || || || ||||||||||
Sbjct: 125845397 tgttcactagcctgttaaggcatgacctgaagataaactggcaatgaccactttatcttt 125845456
Query: 935 ttggtcttaactatgcccattttatttaaaattacctgtatccaaaatactgccctttta 994
||||||||||||| || |||| | |||||||| ||||||| ||| ||||| |||||||
Sbjct: 125845457 ttggtcttaactacaccaatttca-ttaaaattctctgtatctaaagtactg-cctttta 125845514
Query: 995 ctta 998
||||
Sbjct: 125845515 ctta 125845518
Score = 60.0 bits (30), Expect = 3e-06
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 128 aaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccagtgccac 187
|||| ||| ||||||||| ||||||||| ||||| || | || ||||| |||||||||
Sbjct: 93321439 aaaacgggagatgttgaggcaggcaagaaggtttttattaaaaaatgtgctcagtgccac 93321380
Query: 188 actgtagaaaagggaggcaagcacaagactggtccaaa 225
|| || ||||| || || || |||||||||||||||||
Sbjct: 93321379 acagtggaaaaaggtggaaaacacaagactggtccaaa 93321342
>Sscrofa_Chr13
|| Length = 218635234
Score = 797 bits (402), Expect = 0.0
Identities = 499/531 (93%), Gaps = 4/531 (0%)
Strand = Plus / Plus
Query: 96 ttgtctgttgagctcggcgaaagaacgattttaaaatgggtgatgttgagaagggcaaga 155
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24009204 ttgtctgttgtgcttggtgaaagaacgattttaaaatgggtgatgttgagaagggcaaga 24009263
Query: 156 agatttttgttcagaagtgtgcccagtgccacactgtagaaaagggaggcaagcacaaga 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24009264 agatttttgttcagaagtgtgcccagtgccacactgtagaaaagggaggcaagcacaaga 24009323
Query: 216 ctggtccaaacctccatggtctctttgggcggaagacaggtcaggctcctggattctctt 275
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct: 24009324 ctggtccaaacctccatggtctgtttgggtggaagacaggtcaggctcctggattcactt 24009383
Query: 276 acacagatgccaacaagaacaaaggcatcacctggggagaggagacactgatggagtacc 335
|||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||
Sbjct: 24009384 acacagatgccaacaagagcaaaggtgtcacctggggagaggagacactgatggaatact 24009443
Query: 336 tggagaatcccaagaagtacatccctggaacaaaaatgatcttcgctggcattaagaaga 395
|||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 24009444 tggagaatcccaagaagtgcattcctggaatgaaaatgatcttcgctggcattaagaaga 24009503
Query: 396 agggagaaagggaagacttgatagcttatctgaaaaaagctactaatgagtaaaagttgg 455
|||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||
Sbjct: 24009504 agggagaaagggaagacttgggagcttatctcaaaaaagctactaatgagtagaagttgg 24009563
Query: 456 ccaccgccttatttattacaagaccgacatgtctcatgacttttatatgtgtaccatatt 515
|||| |||||||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 24009564 ccacggccttatttaatacaagaccaaaatgtctcatgacttttatatgtgtaccatatt 24009623
Query: 516 taaattgatctcatactctagaattcagatcatgtatggctgatggaatgtttctgttgg 575
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 24009624 taaactgatctcatacactagaattcagatcatgtatagctgatggaatgtttcttttgg 24009683
Query: 576 atggtcctgatttaaataagattggttggtggctaaatgaatatggtcagc 626
| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 24009684 acggtcctgatttaaataaga----ttggtggctaaatgaatatggtcagc 24009730
Score = 692 bits (349), Expect = 0.0
Identities = 606/689 (87%), Gaps = 12/689 (1%)
Strand = Plus / Plus
Query: 101 tgttgagctcggcgaaagaacgattttaaaatgggtgatgttgagaagggcaagaagatt 160
||||| |||| |||||||||| | || ||| || ||| |||| ||||||||| ||||||
Sbjct: 129842477 tgttgtgctcagcgaaagaacaacttaaaagtgtgtggcgttgggaagggcaaaaagatt 129842536
Query: 161 tttgttcagaagtgtgcccagtgccacactgtagaaaagggaggcaagcacaagactggt 220
|||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |
Sbjct: 129842537 tttgttcagaagtgtgaccagtgccatactgtagaaaagggag-caagcacaagactgat 129842595
Query: 221 ccaaacctccatggtctctttgggcggaagacaggtcaggctcctggattctcttacaca 280
||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||
Sbjct: 129842596 ccaaacctccatggtctatttgggcaggagacaggtcaggctcctggattcacttacaca 129842655
Query: 281 gatgccaacaagaacaaaggcatcacctggggagaggagacactgatggagtacctggag 340
|||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||| |||||
Sbjct: 129842656 gatgccaacaggaacaaaggtatcacctgggg-gaggagacattgatggagtacttggag 129842714
Query: 341 aatcccaagaagtacatccctggaacaaaaatgatcttcgctggcattaagaagaaggga 400
||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 129842715 aatcccaagaagtacatccctggaacaaaaatgatcttctctcgcattaacaagaaggga 129842774
Query: 401 gaaagggaagacttgatagcttatctgaaaaaagctactaatgagtaaaagttggccacc 460
||||||||| ||| || ||||||| ||||||| ||||||||||||| ||||||||||
Sbjct: 129842775 gaaagggaaaactcagtaacttatctcaaaaaaggtactaatgagtaatagttggccact 129842834
Query: 461 gccttatttattacaagaccgacatgtctcatgacttttatatgtgtaccatatttaaat 520
|||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||
Sbjct: 129842835 gccttatttattacaaaactaaaatgtctcatgacttttatatgtgtaccaaatttaaat 129842894
Query: 521 tgatctcatactctagaattcagatcatgtatggctgatggaatgtttctgttggatggt 580
||||||||||| |||||||||||||||||||||||||||||||||||| | ||| | ||
Sbjct: 129842895 tgatctcatacactagaattcagatcatgtatggctgatggaatgttttttttgaacagt 129842954
Query: 581 cctgatttaaataagattggttggtggctaaatgaatatggtcagctgtttgaattttaa 640
||||||||||||||||| ||||||||| ||||| ||||||| |||| ||||||
Sbjct: 129842955 cctgatttaaataagat-------tggctaaattaatatcgtcagctttttggattttag 129843007
Query: 641 tattaattctagttcaacaagtactatcactgtctttcccttctacagagatggttaaac 700
|| |||||| ||||||||||||||||||||| | || ||||||| ||||| | ||||||
Sbjct: 129843008 tagtaattccagttcaacaagtactatcactcttttctccttctaaagagacgattaaac 129843067
Query: 701 ttgaatgtggagtgttaaacttttcaggaa---aatggtgaataccttctcagaacctat 757
| ||| | | |||||||||||||||| ||| |||||||||||||| |||||||
Sbjct: 129843068 tcaaatatcaaagattaaacttttcaggaagatgatgatgaataccttctcaaaacctat 129843127
Query: 758 aggagattggttttatatttagatttcta 786
||||| |||||||||||||||||||||||
Sbjct: 129843128 aggaggttggttttatatttagatttcta 129843156
Score = 412 bits (208), Expect = e-112
Identities = 272/292 (93%), Gaps = 1/292 (0%)
Strand = Plus / Plus
Query: 128 aaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccagtgccac 187
|||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct: 117479186 aaaatgggagatgttgagaaggacgagaagatttttgttcagaagtgtgcccagagccat 117479245
Query: 188 actgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttgggcgg 247
|||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |
Sbjct: 117479246 actgtagaaaagggag-caagcacaagactggtccaaaccctcatggtctgtttgggctg 117479304
Query: 248 aagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggcatcacc 307
|||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct: 117479305 aagacaggtcaggctcctggattcacttacacagatgccgacaagaagaaaggcatcacc 117479364
Query: 308 tggggagaggagacactgatggagtacctggagaatcccaagaagtacatccctggaaca 367
|||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 117479365 tggggaaaggagacattgatggagtacttggagaatcccaagaagtacatccctggaaca 117479424
Query: 368 aaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatag 419
|||||||||||| || |||||||||| |||||||||||||| ||||||||||
Sbjct: 117479425 aaaatgatcttcactagcattaagaaaaagggagaaagggaggacttgatag 117479476
Score = 343 bits (173), Expect = 1e-91
Identities = 287/325 (88%)
Strand = Plus / Plus
Query: 461 gccttatttattacaagaccgacatgtctcatgacttttatatgtgtaccatatttaaat 520
||||| |||||||||| || | ||||| |||||||||||||||||||||| |||||||
Sbjct: 117479782 gccttttttattacaaaactaaaatgtcacatgacttttatatgtgtaccacgtttaaat 117479841
Query: 521 tgatctcatactctagaattcagatcatgtatggctgatggaatgtttctgttggatggt 580
||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 117479842 tgatctcattcactagaattcagatcatgtatggctgatggaatgtttctgttggacggt 117479901
Query: 581 cctgatttaaataagattggttggtggctaaatgaatatggtcagctgtttgaattttaa 640
|||||| ||||||||||||||||||||||||||||||| ||| | | |||||||||||
Sbjct: 117479902 cctgatgtaaataagattggttggtggctaaatgaatacagtctggtttttgaattttag 117479961
Query: 641 tattaattctagttcaacaagtactatcactgtctttcccttctacagagatggttaaac 700
| |||||| | ||||||||||||||||||||| || |||||||||||| ||| ||||||
Sbjct: 117479962 tggtaattccaattcaacaagtactatcactgttttccccttctacagatatgattaaac 117480021
Query: 701 ttgaatgtggagtgttaaacttttcaggaaaatggtgaataccttctcagaacctatagg 760
|||||| |||| ||||| | ||||| ||| |||||||||||||||||| ||||| || |
Sbjct: 117480022 ttgaatatggaatgttacatttttcgggaggatggtgaataccttctcaaaacctgtaag 117480081
Query: 761 agattggttttatatttagatttct 785
|||||||||||| |||| |||||||
Sbjct: 117480082 agattggttttagattttgatttct 117480106
Score = 200 bits (101), Expect = 1e-48
Identities = 147/161 (91%), Gaps = 1/161 (0%)
Strand = Plus / Plus
Query: 821 agatcccttcactgtctcatagaacagagcaagattcacctgtgtttcaagttgtgttca 880
||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24010109 agatccctttactctctcttagaacagagcaagattcacctgtgtttcaagttgtgttca 24010168
Query: 881 ctagcctgttaaggcatgagccaatggtaaactgacagtgtcccctttatctttttggtc 940
||||||||||||||||||||| | | |||||||||| |||| |||||||||||||||||
Sbjct: 24010169 ctagcctgttaaggcatgagctgaagataaactgacaatgtctcctttatctttttggtc 24010228
Query: 941 ttaactatgcccattttatttaaaattacctgtatccaaaa 981
||||||||||| |||| | ||||||||| ||||||| ||||
Sbjct: 24010229 ttaactatgccaatttca-ttaaaattatctgtatctaaaa 24010268
Score = 194 bits (98), Expect = 7e-47
Identities = 148/165 (89%), Gaps = 6/165 (3%)
Strand = Plus / Plus
Query: 633 aattttaatattaattctagttcaacaagtactatcactgtctttcccttctacagagat 692
||||||| || |||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct: 24009915 aattttagtagtaattcgagttcaacaagtactatcactgttttccccttctacagagat 24009974
Query: 693 ggttaaacttgaatgtggagtgttaaacttttcaggaa------aatggtgaataccttc 746
| |||||| |||||||||| |||||||||||||||||| |||||||||| |||||
Sbjct: 24009975 gattaaacgtgaatgtggaatgttaaacttttcaggaagatggtaatggtgaatgccttc 24010034
Query: 747 tcagaacctataggagattggttttatatttagatttctataact 791
|||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 24010035 tcagaacctataggagattggttttatactcagatttctataact 24010079
Score = 170 bits (86), Expect = 1e-39
Identities = 144/162 (88%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 820 aagatcccttcactgtctcatagaacagagcaagattcacctgtgtttcaagttgtgttc 879
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 129843189 aagatcccttcactgtctcatagaacaaagtaagattcacctgtgtttcaagttgtgttc 129843248
Query: 880 actagcctgttaaggcatgagccaatggtaaactgacagtgtcccctttatctttttggt 939
|||| |||||||||||| |||| | | |||||||||| ||||| ||||||| |||||||
Sbjct: 129843249 actatcctgttaaggcaagagctgaagataaactgacaatgtccactttatccttttggt 129843308
Query: 940 cttaactatgcccattttatttaaaattacctgtatccaaaa 981
||||||||| | |||||| |||||||| ||||||| ||||
Sbjct: 129843309 cttaactatacgaatttta-ttaaaattctctgtatctaaaa 129843349
Score = 141 bits (71), Expect = 9e-31
Identities = 197/237 (83%), Gaps = 9/237 (3%)
Strand = Plus / Plus
Query: 284 gccaacaagaacaaaggcatcacctggggagaggagacactgatggagtacctggagaat 343
|||| |||||||||||||||| | ||||||||||||||| |||||| ||| |||||| |
Sbjct: 107809372 gccagcaagaacaaaggcatctcatggggagaggagacagtgatggggtatatggagact 107809431
Query: 344 cccaagaagtacatccctgg---aacaaaaatga-----tcttcgctggcattaagaaga 395
||||||||||||| || || || ||||| || |||| | |||||||||||||
Sbjct: 107809432 cccaagaagtacagcctgggggaaaaaaaaaagaaaaaatctttacaggcattaagaaga 107809491
Query: 396 agggagaaagggaagacttgatagcttatctgaaaaaagctactaatgagtaaaagttgg 455
|| ||| |||| ||||||||||| |||||| |||| ||||||||| |||||| ||||||
Sbjct: 107809492 tggcagatagggcagacttgatagattatctcaaaatagctactaaggagtaatagttgg 107809551
Query: 456 ccaccgccttatttattacaagaccgacatgtctcatgac-ttttatatgtgtacca 511
||| |||||||||||||||| || || |||||||||||| |||| |||||||||||
Sbjct: 107809552 ccattgccttatttattacaaaacagaaatgtctcatgactttttttatgtgtacca 107809608
Score = 127 bits (64), Expect = 1e-26
Identities = 118/135 (87%), Gaps = 2/135 (1%)
Strand = Plus / Plus
Query: 822 gatcccttcactgtctcatagaacagagcaagattcacctgtgtttcaagttgtgttcac 881
||||| |||||| ||||||| ||||| ||||||||| ||||||||||| ||||||||||
Sbjct: 117480444 gatcctttcactatctcataaaacag--caagattcatctgtgtttcaatttgtgttcac 117480501
Query: 882 tagcctgttaaggcatgagccaatggtaaactgacagtgtcccctttatctttttggtct 941
||||||| |||||||||||| | | |||||||||| | ||| |||| ||||||||||||
Sbjct: 117480502 tagcctgataaggcatgagctgaagataaactgacaatatccactttgtctttttggtct 117480561
Query: 942 taactatgcccattt 956
|||||||||| ||||
Sbjct: 117480562 taactatgccaattt 117480576
Score = 101 bits (51), Expect = 7e-19
Identities = 103/119 (86%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 136 tgatgttgagaagggcaagaagatttttgttcagaagtgtgcccagtgccacactgtaga 195
|||||||||||||||| |||||||||| |||||| |||||||||||||||| | | ||
Sbjct: 107808916 tgatgttgagaagggcgagaagatttt-gttcagtagtgtgcccagtgccatatgatgga 107808974
Query: 196 aaagggaggcaagcacaagactggtccaaacctccatggtctctttgggcggaagacag 254
||||| |||||||||||||| ||| ||| | ||||||||||| ||||||| |||||||
Sbjct: 107808975 aaaggaaggcaagcacaagattgggccagatctccatggtctgtttgggcaaaagacag 107809033
Score = 85.7 bits (43), Expect = 4e-14
Identities = 58/62 (93%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 827 cttcactgtctcatagaacagagcaagattcacctgtgtttcaagttgtgttcactagcc 886
|||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 107809923 cttcacagtctcatagaa--gagcaagattcacctgtgtttcaagttgtgttcattagcc 107809980
Query: 887 tg 888
||
Sbjct: 107809981 tg 107809982
Score = 79.8 bits (40), Expect = 3e-12
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 317 gagacactgatggagtacctggagaatcccaagaagtacatccctggaacaaaaatgatc 376
||||||||||||||||| | ||||||||||||||||| ||||||||| |||||| ||||
Sbjct: 190598968 gagacactgatggagtatttagagaatcccaagaagtatatccctggaccaaaaaggatc 190598909
Query: 377 ttcgctgg 384
|| |||||
Sbjct: 190598908 ttggctgg 190598901
>Sscrofa_Chr01
|| Length = 315321322
Score = 759 bits (383), Expect = 0.0
Identities = 603/678 (88%), Gaps = 25/678 (3%)
Strand = Plus / Plus
Query: 114 gaaagaacgattttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagt 173
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274706098 gaaagaatgattttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagt 274706157
Query: 174 gtgcccagtgccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatg 233
||||||||||||| ||| ||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 274706158 gtgcccagtgccatactatagaagagggaggcaagcacaagactggaccaaacttccatg 274706217
Query: 234 gtctctttgggcggaagacaggtcaggctcctggattctcttacacagatgccaacaaga 293
|||| |||| || |||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 274706218 gtctgtttgtgcagaagacaggtcaagctcctggatttacttacacagatgccaacaaga 274706277
Query: 294 acaaaggcatcacctggggagaggagacactgatggagtacctggagaatcccaagaagt 353
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 274706278 acaaaggcatcacctggggagaggagacactgatggagtagttggagaatccaaagaagt 274706337
Query: 354 acatccctggaacaaaaatgatcttcgctggcattaagaagaagggagaaagggaagact 413
||||||||||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct: 274706338 acatccctggaacggaaatgatctttgctggcattaag-------gagaaagggaagact 274706390
Query: 414 tgatagcttatctgaaaaaagctactaatgagtaaaagttggccaccgccttatttatta 473
|| |||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 274706391 tggtagcttatctcaaaaaagctactaatgaataatagttggccaccaccttatttatta 274706450
Query: 474 caagaccgacatgtctcatgacttttatatgtgtaccatatttaaattgatctcatactc 533
|||||| || || ||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 274706451 caagactgaaat--ctcatgacttttatatgtgtaccatatttaacttgatctcatacac 274706508
Query: 534 tagaattcagatcatgtatggctgatggaatgtttctgttggatggtcctgatttaaata 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 274706509 tagaattcagatcatgtatggctgatggaatgtttctgttggatggtcctgattcaaata 274706568
Query: 594 agattggttggtggctaaatgaatatggtcagctgtttgaattttaatattaattctagt 653
|||||||||| | |||||||||| ||| | | || ||||| |||
Sbjct: 274706569 agattggttgatagctaaatgaa------------ttttagtagcaa----aattccagt 274706612
Query: 654 tcaacaagtactatcactgtctttcccttctacagagatggttaaacttgaatgtggagt 713
| ||||||| |||||||||| || || ||||||||||||| |||||||||||| || | |
Sbjct: 274706613 ttaacaagtgctatcactgttttccctttctacagagatgattaaacttgaatatgaaat 274706672
Query: 714 gttaaacttttcaggaaaatggtgaataccttctcagaacctataggagattggttttat 773
|||||||||| |||||| || ||||||||||||||| |||||||||||||||||||||||
Sbjct: 274706673 gttaaactttccaggaagatagtgaataccttctcaaaacctataggagattggttttat 274706732
Query: 774 atttagatttctataact 791
||||| ||||||||||||
Sbjct: 274706733 atttacatttctataact 274706750
Score = 607 bits (306), Expect = e-171
Identities = 438/482 (90%)
Strand = Plus / Minus
Query: 115 aaagaacgattttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtg 174
|||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 34574282 aaagaatgatttaaaaatggatgatgttgagaggggcaagaagatttttgttcagaagtg 34574223
Query: 175 tgcccagtgccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatgg 234
||| | |||||| |||| |||||| ||||||| || ||||||| ||||||||||||||
Sbjct: 34574222 tgctctgtgccatgctgtggaaaagccaggcaagtactagactggcccaaacctccatgg 34574163
Query: 235 tctctttgggcggaagacaggtcaggctcctggattctcttacacagatgccaacaagaa 294
||| |||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 34574162 tctgtttgggtggaagacaggtcaggctgctggattcacttacacagatgccgacaagaa 34574103
Query: 295 caaaggcatcacctggggagaggagacactgatggagtacctggagaatcccaagaagta 354
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 34574102 caaaggcatcaccaggggagaggagacactgatggagtacttggagaatcccaagaagta 34574043
Query: 355 catccctggaacaaaaatgatcttcgctggcattaagaagaagggagaaagggaagactt 414
|| || ||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 34574042 cacccgtggaacaaaaatgatcttccttggcattaagaagaaggaagaaagggaagactt 34573983
Query: 415 gatagcttatctgaaaaaagctactaatgagtaaaagttggccaccgccttatttattac 474
| |||||||||| |||||||||||||| |||||| |||||||||| |||||| |||||||
Sbjct: 34573982 ggtagcttatctcaaaaaagctactaacgagtaatagttggccactgccttacttattac 34573923
Query: 475 aagaccgacatgtctcatgacttttatatgtgtaccatatttaaattgatctcatactct 534
|||||| | |||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 34573922 aagaccaaaatgtctcatgacttttttatgtgtaccatatttaaattgatctcatatact 34573863
Query: 535 agaattcagatcatgtatggctgatggaatgtttctgttggatggtcctgatttaaataa 594
|||||||||||||| |||| |||||||||| |||| ||||| ||||||||||||||||
Sbjct: 34573862 agaattcagatcatacatggttgatggaatgcttcttttggacagtcctgatttaaataa 34573803
Query: 595 ga 596
||
Sbjct: 34573802 ga 34573801
Score = 434 bits (219), Expect = e-119
Identities = 473/565 (83%), Gaps = 14/565 (2%)
Strand = Plus / Plus
Query: 392 aagaagggagaaagggaagacttgatagcttatctgaaaaaagctactaatgagtaaaag 451
|||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||| ||
Sbjct: 60957212 aagaagggagaaagggaagacttggtagcttatttcaaaaaagctactaataagtaatag 60957271
Query: 452 ttggccaccgccttatttattacaagaccgacatgtctcatgacttttatatgtgtacca 511
||| |||| |||||||||||||||||| ||| || ||||||||||||||| ||||||
Sbjct: 60957272 ttgaccactgccttatttattacaagatcgaaatatctcatgacttttatgtgtgta--- 60957328
Query: 512 tatttaaattgatctcatactctagaattcagatcatgtatggctgatggaatgtttctg 571
||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 60957329 tatctaaattgatttcatatactagaattcagatcatgtatggctgatggaatgtttctg 60957388
Query: 572 ttggatggtcctgatttaaataagattggttggtggctaaatgaatatggtcagctgttt 631
||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 60957389 ttggacagtcctgatttaaataagattggtttgtggctaa-tgaatatggtcagcttttc 60957447
Query: 632 gaattttaatattaattctagttcaacaagtactatcactgtctttcccttctacagaga 691
|||||| | || ||||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 60957448 gaatttaagtagtaatttcagttcaacaagtactatcactgttttccccttctaaagaga 60957507
Query: 692 tggttaaacttgaatgtggagtgttaaacttttcaggaaaatggtgaataccttctcaga 751
|| |||||| |||| ||| |||||| ||||||||||| |||||||||| ||||||| |
Sbjct: 60957508 tgattaaacatgaaaacggaatgttaagcttttcaggaagatggtgaatatcttctcaaa 60957567
Query: 752 acctataggagattggttttatatttagatttctataactnnnnnnnnnnnnnnnnnnnn 811
|||||||| ||| ||||||||||||||| |||||||||||
Sbjct: 60957568 acctatagaagactggttttatatttagctttctataactggttatagtaatatatttaa 60957627
Query: 812 nnnctgagaagatcccttcactgtctcatagaacagagcaagattcacctgtgtttcaag 871
|||||| |||||||||||||||||||| |||||||||||| |||||||
Sbjct: 60957628 atactgagacgatcccttcactgtctcataaaacagagcaaga----------tttcaag 60957677
Query: 872 ttgtgttcactagcctgttaaggcatgagccaatggtaaactgacagtgtcccctttatc 931
|||||| ||| ||||| |||||||| |||| || | |||||||||| ||||| |||| |
Sbjct: 60957678 ttgtgtacaccagcctattaaggcaagagctaaagataaactgacactgtccacttttcc 60957737
Query: 932 tttttggtcttaactatgcccattt 956
|||||||||||||||||||| ||||
Sbjct: 60957738 tttttggtcttaactatgccaattt 60957762
Score = 359 bits (181), Expect = 2e-96
Identities = 256/281 (91%)
Strand = Plus / Plus
Query: 114 gaaagaacgattttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagt 173
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 60956671 gaaagaacgattcaaaaatgggtgatgttgagatgggcaagaagatttttgttcagatgt 60956730
Query: 174 gtgcccagtgccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatg 233
||||||||| ||| ||||| |||||||||| ||| || |||| ||| |||||||||| ||
Sbjct: 60956731 gtgcccagtaccatactgttgaaaagggagacaaacataagattggcccaaacctccttg 60956790
Query: 234 gtctctttgggcggaagacaggtcaggctcctggattctcttacacagatgccaacaaga 293
|||| ||||| | |||||||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 60956791 gtctgtttggaccgaagacaggtcaggctactagattcacttacacagataccaacaaga 60956850
Query: 294 acaaaggcatcacctggggagaggagacactgatggagtacctggagaatcccaagaagt 353
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 60956851 acaaaggcatcaccttgggagaggagacactgatggagtacttggagaatcccaagaagt 60956910
Query: 354 acatccctggaacaaaaatgatcttcgctggcattaagaag 394
|||||||||||||||| |||||||| |||| ||||||||||
Sbjct: 60956911 acatccctggaacaaacatgatctttgctgacattaagaag 60956951
Score = 222 bits (112), Expect = 3e-55
Identities = 256/300 (85%), Gaps = 3/300 (1%)
Strand = Plus / Plus
Query: 492 tgacttttatatgtgtaccatatttaaattgatctcatactctagaattcagatcatgta 551
|||||| | |||||||||||||||||||||||| |||||| |||||||| |||||||| |
Sbjct: 283134111 tgacttctttatgtgtaccatatttaaattgatgtcatacactagaattaagatcatgaa 283134170
Query: 552 tggctgatggaatgtttctgttggatggtcctgatttaaataagattggttggtggctaa 611
||||||| ||| | |||||| |||| |||| ||| |||||||||||||| | || |||
Sbjct: 283134171 tggctgagggactatttctgctggacggtcttgacttaaataagattggct-atgactac 283134229
Query: 612 atgaatatggtcagctgtttgaattttaatattaattctagttcaacaagtactatcact 671
|||||||||||||||| ||| |||||||||| ||||| ||||||| || || |||||
Sbjct: 283134230 atgaatatggtcagctttttaaattttaatagcaattccagttcaataactaaggtcact 283134289
Query: 672 gtctttcccttctacagagatggttaaacttgaatgtggagtgttaaacttttcaggaaa 731
| |||||||||||||||||||| || | ||||| ||| |||||||||||||| |||
Sbjct: 283134290 g-ctttcccttctacagagatgattccatgtgaataaggaatgttaaacttttcaagaag 283134348
Query: 732 atggtgaataccttctcagaacctataggagattggttttatatttagatttctataact 791
|||||||||||||| | | |||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 283134349 atggtgaatacctttttaaaacctatagg-gattggttttacatttagatttctataact 283134407
Score = 218 bits (110), Expect = 5e-54
Identities = 282/336 (83%), Gaps = 5/336 (1%)
Strand = Plus / Plus
Query: 123 attttaaaatgggtgatgttgagaagggcaagaagatttttgttcagaagtgtgcccagt 182
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 283133770 atttaaaaatgggtgatgttgcgaagggcaagaagatttttgttcagaagtgtgcctggt 283133829
Query: 183 gccacactgtagaaaagggaggcaagcacaagactggtccaaacctccatggtctctttg 242
|||| ||||| | ||||| || ||||||||| || ||| ||||| ||||| ||||
Sbjct: 283133830 gccatactgtggggaagggtggtgagcacaagatggggtaaaatctccacggtctgtttg 283133889
Query: 243 ggcggaagacaggtcaggctcctggattctcttacacagatgccaacaagaacaaaggca 302
|| | |||||| ||||| || ||||||| |||||| ||||||||||| ||||||||||
Sbjct: 283133890 gg-gaaagacaagtcagactgttggattcacttacatggatgccaacaacaacaaaggca 283133948
Query: 303 tcacctggggagaggagacactgatggagtacct-ggagaatcccaagaagtacatccct 361
|||||||||||||||||| ||| || ||||| | ||||||||||||||||| |||| ||
Sbjct: 283133949 tcacctggggagaggagatgctgctgaagtacttgggagaatcccaagaagtgcatctct 283134008
Query: 362 ggaacaaaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatagct 421
|||||| || || |||| | ||||||| ||||||| |||||||||||| | ||||||
Sbjct: 283134009 ggaacacaagtggtctttgttggcatt---aagaaggaagaaagggaagatctaatagct 283134065
Query: 422 tatctgaaaaaagctactaatgagtaaaagttggcc 457
| ||| ||||||||| ||||||| ||| ||||||||
Sbjct: 283134066 tgtctcaaaaaagctgctaatgactaatagttggcc 283134101
Score = 167 bits (84), Expect = 1e-38
Identities = 174/204 (85%)
Strand = Plus / Minus
Query: 588 taaataagattggttggtggctaaatgaatatggtcagctgtttgaattttaatattaat 647
||||||||||||| | ||| ||||||| |||| | ||| | |||||||||| || ||||
Sbjct: 283949023 taaataagattggcttgtgactaaatggatatagacagttttttgaattttgttagtaat 283948964
Query: 648 tctagttcaacaagtactatcactgtctttcccttctacagagatggttaaacttgaatg 707
|| |||||||||||||||||||| || || |||||||| ||||||| | |||||||||
Sbjct: 283948963 tccagttcaacaagtactatcacagttttccccttctaaagagatgactgaacttgaata 283948904
Query: 708 tggagtgttaaacttttcaggaaaatggtgaataccttctcagaacctataggagattgg 767
||| ||| |||||||||||| | ||||||||||||||| || ||||||||||||| |||
Sbjct: 283948903 aggaatgtcaaacttttcagggagatggtgaataccttcccaaaacctataggagactgg 283948844
Query: 768 ttttatatttagatttctataact 791
||||| |||||||||||| |||||
Sbjct: 283948843 ttttacatttagatttctgtaact 283948820
Score = 129 bits (65), Expect = 3e-27
Identities = 131/151 (86%), Gaps = 4/151 (2%)
Strand = Plus / Minus
Query: 364 aacaaaaatgatcttcgctggcattaagaagaagggagaaagggaagacttgatagctta 423
|||||||||||||||| |||||||||||||| | | ||||||||||| ||| ||||||
Sbjct: 283951969 aacaaaaatgatcttcactggcattaagaagga---aaaaagggaagacctgacagctta 283951913
Query: 424 tctgaaaaaagctactaatgagtaaaagttggccaccgccttatttattacaagaccgac 483
||| ||||||||||||||||||||| || ||||| | |||||||||||||||| || ||
Sbjct: 283951912 tctcaaaaaagctactaatgagtaatagctggcctctgccttatttattacaaaacagaa 283951853
Query: 484 atgtctcatga-cttttatatgtgtaccata 513
|| ||||||| ||||| |||||||||||||
Sbjct: 283951852 atacctcatgaccttttttatgtgtaccata 283951822
Score = 127 bits (64), Expect = 1e-26
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 830 cactgtctcatagaacagagcaagattcacctgtgtttcaagttgtgttcactagcctgt 889
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 274706789 cactgtctcatagaacacagcaagattcacctgtgtttcaaattgtgttcactagcctgt 274706848
Query: 890 taaggcatgagc 901
||||||||||||
Sbjct: 274706849 taaggcatgagc 274706860
Score = 113 bits (57), Expect = 2e-22
Identities = 127/149 (85%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 173 tgtgcccagtgccacactgtagaaaagggaggcaagcacaagactggtccaaacctccat 232
||||||||||||| ||||| | |||| ||| ||||||| ||||| ||||| |||||
Sbjct: 283952311 tgtgcccagtgccgtactgtggggcagggcggcgagcacaaaactgggccaaatctccac 283952252
Query: 233 ggtctcttt-gggcggaagacaggtcaggctcctggattctcttacacagatgccaacaa 291
||||| ||| ||| | ||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 283952251 ggtctgttttgggtgaaagacgagtcaggctgttggattctcttacacagatgccaacaa 283952192
Query: 292 gaacaaaggcatcacctggggagaggaga 320
||||||| ||||||||||||||||||||
Sbjct: 283952191 caacaaagacatcacctggggagaggaga 283952163
Score = 103 bits (52), Expect = 2e-19
Identities = 133/157 (84%), Gaps = 6/157 (3%)
Strand = Plus / Plus
Query: 842 gaacagagcaagattcacctgtgtttcaagttgtgttcactagcctgttaaggcatgagc 901
||||||||||||||||| ||||||||||||| |||| |||||| |||||| | ||||
Sbjct: 283134699 gaacagagcaagattca----tgtttcaagttgtattcattagcctcttaaggtaagagc 283134754
Query: 902 caatggtaaactgacagtgtcccctttatctttttggtcttaactatgcccattttattt 961
| | |||||||||| ||||| ||||||||||||||||||||| ||| ||| ||| ||
Sbjct: 283134755 tgaggataaactgacaatgtccactttatctttttggtcttaaccatg-ccaacttagtt 283134813
Query: 962 aaaattacctgtatccaaaatactgcccttttactta 998
|||||| ||||||| ||||||||| |||||||||||
Sbjct: 283134814 aaaattctctgtatctaaaatactg-ccttttactta 283134849
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,661,182
Number of extensions: 540
Number of successful extensions: 540
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 142
Length of query: 1023
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1002
Effective length of database: 2,808,413,156
Effective search space: 2814029982312
Effective search space used: 2814029982312
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)