Animal-Genome cDNA 20110601C-013466


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013466
         (1038 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001094523.1| syntaxin-12 [Bos taurus].                         447   e-126
Alignment   gi|NP_001071332.1| syntaxin-7 [Bos taurus].                          233   3e-61
Alignment   gi|NP_001075915.1| t-SNARE domain-containing protein 1 [Bos tau...   114   1e-25
Alignment   gi|XP_002692465.1| PREDICTED: syntaxin 16-like isoform 4 [Bos t...    79   7e-15
Alignment   gi|XP_002692464.1| PREDICTED: syntaxin 16-like isoform 3 [Bos t...    79   7e-15
Alignment   gi|XP_002692463.1| PREDICTED: syntaxin 16-like isoform 2 [Bos t...    79   7e-15
Alignment   gi|XP_002692462.1| PREDICTED: syntaxin 16-like isoform 1 [Bos t...    79   7e-15
Alignment   gi|XP_597848.2| PREDICTED: syntaxin 16-like isoform 1 [Bos taur...    79   7e-15
Alignment   gi|XP_002701149.1| PREDICTED: syntaxin 16-like [Bos taurus].          79   7e-15
Alignment   gi|XP_002701148.1| PREDICTED: syntaxin 16-like [Bos taurus].          79   7e-15

>ref|NP_001094523.1| syntaxin-12 [Bos taurus].
          Length = 274

 Score =  447 bits (1149), Expect = e-126
 Identities = 234/250 (93%), Positives = 234/250 (93%)
 Frame = +3

Query: 132 MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 311
           MSYGPLDMYRNPG SGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
Sbjct: 1   MSYGPLDMYRNPGGSGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 60

Query: 312 ENLQQLQHSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAV 491
           ENLQQLQHSTNQLAKETN              TSEQRQQKLQKERLMNDFSAALNSFQAV
Sbjct: 61  ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQKLQKERLMNDFSAALNSFQAV 120

Query: 492 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 671
           QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQ QEDEVAITEQDLEL
Sbjct: 121 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQRQEDEVAITEQDLEL 180

Query: 672 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 851
           IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA
Sbjct: 181 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 240

Query: 852 AYYQKKSRKK 881
           AYYQKKSRKK
Sbjct: 241 AYYQKKSRKK 250


>ref|NP_001071332.1| syntaxin-7 [Bos taurus].
          Length = 261

 Score =  233 bits (593), Expect = 3e-61
 Identities = 129/245 (52%), Positives = 174/245 (71%), Gaps = 3/245 (1%)
 Frame = +3

Query: 153 MYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQ 332
           M   PG  G P +    + Q  S NIQ+I+Q +A+I+  ++QLGT QDS +L++ LQQ Q
Sbjct: 1   MSYTPGVGGDPAQ----LAQRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQ 56

Query: 333 HSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEK 512
             TNQLAKET+               S+QRQ+K+QK+RL+ +F+A+L +FQ VQR+ +E+
Sbjct: 57  QYTNQLAKETDKYIKEFGSLPTTP--SDQRQRKIQKDRLVAEFTASLTNFQKVQRQAAER 114

Query: 513 EKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKER 683
           EKE +AR RA SR+S    EE  +E  LVS++S     Q Q+Q  +  ITE DL LI+ER
Sbjct: 115 EKEFVARVRASSRVSGGFPEESSKERNLVSWESQ---TQPQAQLQDEEITEDDLRLIQER 171

Query: 684 ETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQ 863
           E++IRQLEADI+D+N+IFKDL MMIH+QGD+IDSIEANVE++EVHV++A  QL RAA YQ
Sbjct: 172 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQ 231

Query: 864 KKSRK 878
           +KSRK
Sbjct: 232 RKSRK 236


>ref|NP_001075915.1| t-SNARE domain-containing protein 1 [Bos taurus].
          Length = 496

 Score =  114 bits (285), Expect = 1e-25
 Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 3/232 (1%)
 Frame = +3

Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNXX 371
           D   + Q  S NI +I+     ++  +  LG   D+ +L+++L  +Q  TN+    T   
Sbjct: 243 DLQELFQETSANIFQINSNVTSLEQSLQSLGMPGDTQELRDSLHTVQQETNR----TIAA 298

Query: 372 XXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSR 551
                           +Q++LQ +RL    S A+  +  VQ++++EK +  +  A+ G +
Sbjct: 299 SAGALKQTAELLRGCPQQERLQLDRLKTQLSDAVQRYGVVQKKIAEKSRALLPTAQRGGK 358

Query: 552 LSAEERQREEQLVS---FDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILD 722
             + +    E       F+  +       Q     ITE+DLE I+ RE AI Q+E+D+LD
Sbjct: 359 QQSPQAAFAELADDEKIFNGGDGVWPGHEQALLPEITEEDLEAIRLREEAILQIESDLLD 418

Query: 723 VNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           VNQI KDLA M+ +QG+ IDSIEA +E++  H E A++ L  A+ +Q + RK
Sbjct: 419 VNQIIKDLASMVSEQGEAIDSIEAGLEAASSHTEAASELLAGASRHQLRRRK 470


>ref|XP_002692465.1| PREDICTED: syntaxin 16-like isoform 4 [Bos taurus].
          Length = 322

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 78  VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 137

Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
              +  +R    Q+ERL+ +  A+L   QA+Q    S +  +S    R  +R    +   
Sbjct: 138 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 195

Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
              +   D  E+ N +  +   ++++ + EQ+  L++ERE  IRQ+   I D+N+IF+DL
Sbjct: 196 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 254

Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
             MI +QG ++D I+ NVE S +  E    QL +A  YQKK+RK
Sbjct: 255 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 298


>ref|XP_002692464.1| PREDICTED: syntaxin 16-like isoform 3 [Bos taurus].
          Length = 305

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 61  VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 120

Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
              +  +R    Q+ERL+ +  A+L   QA+Q    S +  +S    R  +R    +   
Sbjct: 121 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 178

Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
              +   D  E+ N +  +   ++++ + EQ+  L++ERE  IRQ+   I D+N+IF+DL
Sbjct: 179 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 237

Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
             MI +QG ++D I+ NVE S +  E    QL +A  YQKK+RK
Sbjct: 238 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 281


>ref|XP_002692463.1| PREDICTED: syntaxin 16-like isoform 2 [Bos taurus].
          Length = 326

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 82  VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 141

Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
              +  +R    Q+ERL+ +  A+L   QA+Q    S +  +S    R  +R    +   
Sbjct: 142 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 199

Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
              +   D  E+ N +  +   ++++ + EQ+  L++ERE  IRQ+   I D+N+IF+DL
Sbjct: 200 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 258

Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
             MI +QG ++D I+ NVE S +  E    QL +A  YQKK+RK
Sbjct: 259 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 302


>ref|XP_002692462.1| PREDICTED: syntaxin 16-like isoform 1 [Bos taurus].
          Length = 309

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 65  VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 124

Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
              +  +R    Q+ERL+ +  A+L   QA+Q    S +  +S    R  +R    +   
Sbjct: 125 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 182

Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
              +   D  E+ N +  +   ++++ + EQ+  L++ERE  IRQ+   I D+N+IF+DL
Sbjct: 183 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 241

Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
             MI +QG ++D I+ NVE S +  E    QL +A  YQKK+RK
Sbjct: 242 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 285


>ref|XP_597848.2| PREDICTED: syntaxin 16-like isoform 1 [Bos taurus].
          Length = 305

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 61  VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 120

Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
              +  +R    Q+ERL+ +  A+L   QA+Q    S +  +S    R  +R    +   
Sbjct: 121 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 178

Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
              +   D  E+ N +  +   ++++ + EQ+  L++ERE  IRQ+   I D+N+IF+DL
Sbjct: 179 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 237

Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
             MI +QG ++D I+ NVE S +  E    QL +A  YQKK+RK
Sbjct: 238 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 281


>ref|XP_002701149.1| PREDICTED: syntaxin 16-like [Bos taurus].
          Length = 322

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 78  VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 137

Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
              +  +R    Q+ERL+ +  A+L   QA+Q    S +  +S    R  +R    +   
Sbjct: 138 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 195

Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
              +   D  E+ N +  +   ++++ + EQ+  L++ERE  IRQ+   I D+N+IF+DL
Sbjct: 196 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 254

Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
             MI +QG ++D I+ NVE S +  E    QL +A  YQKK+RK
Sbjct: 255 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 298


>ref|XP_002701148.1| PREDICTED: syntaxin 16-like [Bos taurus].
          Length = 309

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 65  VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 124

Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
              +  +R    Q+ERL+ +  A+L   QA+Q    S +  +S    R  +R    +   
Sbjct: 125 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 182

Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
              +   D  E+ N +  +   ++++ + EQ+  L++ERE  IRQ+   I D+N+IF+DL
Sbjct: 183 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 241

Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
             MI +QG ++D I+ NVE S +  E    QL +A  YQKK+RK
Sbjct: 242 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 285


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,639,001
Number of extensions: 875252
Number of successful extensions: 4028
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3905
Number of HSP's successfully gapped: 21
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013466
         (1038 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535342.1| PREDICTED: similar to syntaxin 12 [Canis famili...   441   e-124
Alignment   gi|XP_541104.2| PREDICTED: similar to Syntaxin-7 isoform 1 [Can...   229   2e-60
Alignment   gi|XP_859182.1| PREDICTED: similar to Syntaxin-7 isoform 5 [Can...   227   1e-59
Alignment   gi|XP_859145.1| PREDICTED: similar to Syntaxin-7 isoform 4 [Can...   227   1e-59
Alignment   gi|XP_859071.1| PREDICTED: similar to Syntaxin-7 isoform 3 [Can...   227   1e-59
Alignment   gi|XP_849546.1| PREDICTED: similar to Syntaxin-7 isoform 2 [Can...   227   1e-59
Alignment   gi|XP_539185.2| PREDICTED: similar to syntaxin 12 [Canis famili...   123   2e-28
Alignment   gi|XP_867561.1| PREDICTED: similar to syntaxin 16 isoform b iso...    79   7e-15
Alignment   gi|XP_867549.1| PREDICTED: similar to syntaxin 16 isoform a iso...    79   7e-15
Alignment   gi|XP_867541.1| PREDICTED: similar to syntaxin 16 isoform b iso...    79   7e-15

>ref|XP_535342.1| PREDICTED: similar to syntaxin 12 [Canis familiaris].
          Length = 274

 Score =  441 bits (1135), Expect = e-124
 Identities = 231/250 (92%), Positives = 233/250 (93%)
 Frame = +3

Query: 132 MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 311
           MSYGPLDMYRNPG+SGP LRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
Sbjct: 1   MSYGPLDMYRNPGSSGPQLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 60

Query: 312 ENLQQLQHSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAV 491
           ENLQQLQHSTNQLAKETN               SEQRQQKLQKERLMNDFSAALN+FQAV
Sbjct: 61  ENLQQLQHSTNQLAKETNELLKELGSLPLPLSASEQRQQKLQKERLMNDFSAALNNFQAV 120

Query: 492 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 671
           QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFD HEEWNQMQSQEDEVAITEQDLEL
Sbjct: 121 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDGHEEWNQMQSQEDEVAITEQDLEL 180

Query: 672 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 851
           IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA
Sbjct: 181 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 240

Query: 852 AYYQKKSRKK 881
           AYYQKKSRKK
Sbjct: 241 AYYQKKSRKK 250


>ref|XP_541104.2| PREDICTED: similar to Syntaxin-7 isoform 1 [Canis familiaris].
          Length = 258

 Score =  229 bits (585), Expect = 2e-60
 Identities = 125/225 (55%), Positives = 166/225 (73%)
 Frame = +3

Query: 204 IIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNXXXXXX 383
           + Q  S NIQ+I+Q + +I+  ++QLGT QDS +L++ LQQ Q  TNQLAKET+      
Sbjct: 14  LAQRISSNIQKITQCSVEIQRSLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEF 73

Query: 384 XXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSAE 563
                    SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +EKEKE +AR RA SR+S  
Sbjct: 74  GSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKEKEFVARVRASSRVSVS 131

Query: 564 ERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKD 743
             Q E  LVS++S  +  Q+Q QE+E  ITE DL LI ERE++IRQLEADI+D+N+IFKD
Sbjct: 132 IEQGERNLVSWESQAQ-PQVQVQEEE--ITEDDLRLIHERESSIRQLEADIMDINEIFKD 188

Query: 744 LAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           L MMIH+QGD+IDSIEANVES++VHV++A  QL RAA YQ+KSRK
Sbjct: 189 LGMMIHEQGDVIDSIEANVESADVHVQQANQQLSRAAEYQRKSRK 233


>ref|XP_859182.1| PREDICTED: similar to Syntaxin-7 isoform 5 [Canis familiaris].
          Length = 261

 Score =  227 bits (579), Expect = 1e-59
 Identities = 125/228 (54%), Positives = 168/228 (73%), Gaps = 3/228 (1%)
 Frame = +3

Query: 204 IIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNXXXXXX 383
           + Q  S NIQ+I+Q + +I+  ++QLGT QDS +L++ LQQ Q  TNQLAKET+      
Sbjct: 14  LAQRISSNIQKITQCSVEIQRSLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEF 73

Query: 384 XXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSA- 560
                    SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +EKEKE +AR RA SR+S  
Sbjct: 74  GSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKEKEFVARVRASSRVSGG 131

Query: 561 --EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
             E+  +E  LVS++S  +  Q+Q QE+E  ITE DL LI ERE++IRQLEADI+D+N+I
Sbjct: 132 FPEDSSKERNLVSWESQAQ-PQVQVQEEE--ITEDDLRLIHERESSIRQLEADIMDINEI 188

Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           FKDL MMIH+QGD+IDSIEANVES++VHV++A  QL RAA YQ+KSRK
Sbjct: 189 FKDLGMMIHEQGDVIDSIEANVESADVHVQQANQQLSRAAEYQRKSRK 236


>ref|XP_859145.1| PREDICTED: similar to Syntaxin-7 isoform 4 [Canis familiaris].
          Length = 261

 Score =  227 bits (579), Expect = 1e-59
 Identities = 125/228 (54%), Positives = 168/228 (73%), Gaps = 3/228 (1%)
 Frame = +3

Query: 204 IIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNXXXXXX 383
           + Q  S NIQ+I+Q + +I+  ++QLGT QDS +L++ LQQ Q  TNQLAKET+      
Sbjct: 14  LAQRISSNIQKITQCSVEIQRSLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEF 73

Query: 384 XXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSA- 560
                    SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +EKEKE +AR RA SR+S  
Sbjct: 74  GSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKEKEFVARVRASSRVSGG 131

Query: 561 --EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
             E+  +E  LVS++S  +  Q+Q QE+E  ITE DL LI ERE++IRQLEADI+D+N+I
Sbjct: 132 FPEDSSKERNLVSWESQAQ-PQVQVQEEE--ITEDDLRLIHERESSIRQLEADIMDINEI 188

Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           FKDL MMIH+QGD+IDSIEANVES++VHV++A  QL RAA YQ+KSRK
Sbjct: 189 FKDLGMMIHEQGDVIDSIEANVESADVHVQQANQQLSRAAEYQRKSRK 236


>ref|XP_859071.1| PREDICTED: similar to Syntaxin-7 isoform 3 [Canis familiaris].
          Length = 261

 Score =  227 bits (579), Expect = 1e-59
 Identities = 125/228 (54%), Positives = 168/228 (73%), Gaps = 3/228 (1%)
 Frame = +3

Query: 204 IIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNXXXXXX 383
           + Q  S NIQ+I+Q + +I+  ++QLGT QDS +L++ LQQ Q  TNQLAKET+      
Sbjct: 14  LAQRISSNIQKITQCSVEIQRSLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEF 73

Query: 384 XXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSA- 560
                    SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +EKEKE +AR RA SR+S  
Sbjct: 74  GSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKEKEFVARVRASSRVSGG 131

Query: 561 --EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
             E+  +E  LVS++S  +  Q+Q QE+E  ITE DL LI ERE++IRQLEADI+D+N+I
Sbjct: 132 FPEDSSKERNLVSWESQAQ-PQVQVQEEE--ITEDDLRLIHERESSIRQLEADIMDINEI 188

Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           FKDL MMIH+QGD+IDSIEANVES++VHV++A  QL RAA YQ+KSRK
Sbjct: 189 FKDLGMMIHEQGDVIDSIEANVESADVHVQQANQQLSRAAEYQRKSRK 236


>ref|XP_849546.1| PREDICTED: similar to Syntaxin-7 isoform 2 [Canis familiaris].
          Length = 261

 Score =  227 bits (579), Expect = 1e-59
 Identities = 125/228 (54%), Positives = 168/228 (73%), Gaps = 3/228 (1%)
 Frame = +3

Query: 204 IIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNXXXXXX 383
           + Q  S NIQ+I+Q + +I+  ++QLGT QDS +L++ LQQ Q  TNQLAKET+      
Sbjct: 14  LAQRISSNIQKITQCSVEIQRSLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEF 73

Query: 384 XXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSA- 560
                    SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +EKEKE +AR RA SR+S  
Sbjct: 74  GSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKEKEFVARVRASSRVSGG 131

Query: 561 --EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
             E+  +E  LVS++S  +  Q+Q QE+E  ITE DL LI ERE++IRQLEADI+D+N+I
Sbjct: 132 FPEDSSKERNLVSWESQAQ-PQVQVQEEE--ITEDDLRLIHERESSIRQLEADIMDINEI 188

Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           FKDL MMIH+QGD+IDSIEANVES++VHV++A  QL RAA YQ+KSRK
Sbjct: 189 FKDLGMMIHEQGDVIDSIEANVESADVHVQQANQQLSRAAEYQRKSRK 236


>ref|XP_539185.2| PREDICTED: similar to syntaxin 12 [Canis familiaris].
          Length = 510

 Score =  123 bits (309), Expect = 2e-28
 Identities = 79/244 (32%), Positives = 131/244 (53%), Gaps = 6/244 (2%)
 Frame = +3

Query: 165 PGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTN 344
           P A+     D   + Q  S ++ +I+ + + ++  +  LGT  D+ +L+E+L   Q  TN
Sbjct: 243 PRATQADPSDLQELFQQTSASVFQINSSVSSLEQSLRSLGTPSDTQELRESLHAAQQETN 302

Query: 345 Q-LAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKE 521
           + +A  T                    Q+ LQ +RL    S A+  +  VQ++++EK + 
Sbjct: 303 KTVAASTGAVKQMTELLRGLCPEHALCQECLQLDRLKTQLSDAIQRYGVVQKKIAEKSRA 362

Query: 522 SIARARAGSRLSAE-----ERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERE 686
            +  A+ G +  +      E   +E++  F+  +   Q Q Q     ITE+DLE I+ RE
Sbjct: 363 LLPTAQRGGKQQSPRGPFAELPDDEKI--FNGGDGMWQGQEQALLPEITEEDLEAIRLRE 420

Query: 687 TAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQK 866
            AI Q+E+D+LDVNQI KDLA M+ +QGD I+SIEA++E++  H E A++ L  A+ +Q 
Sbjct: 421 EAILQIESDLLDVNQIIKDLASMVSEQGDAIESIEASLEAASSHTEAASELLAGASRHQL 480

Query: 867 KSRK 878
           + RK
Sbjct: 481 QRRK 484


>ref|XP_867561.1| PREDICTED: similar to syntaxin 16 isoform b isoform 9 [Canis
           familiaris].
          Length = 309

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 11/228 (4%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 65  VDEIQYDVGRIKLKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 124

Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSAEERQRE 578
              +  +R    Q+ERL+ +  A+L   QA+Q   +     S  RA++G     + R+  
Sbjct: 125 ALPSRARRACSEQEERLLRNVVASLA--QALQELST-----SFRRAQSGYLKRMKNREER 177

Query: 579 EQ--------LVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
            Q        L+              +D++ + EQ+  +++ERE  IRQ+   I D+N+I
Sbjct: 178 SQHFFDTSVPLMDDGDDNTLYDRGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEI 237

Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           F+DL  MI +QG ++D I+ NVE S +  E    QL +A  YQKK+RK
Sbjct: 238 FRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 285


>ref|XP_867549.1| PREDICTED: similar to syntaxin 16 isoform a isoform 8 [Canis
           familiaris].
          Length = 322

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 11/228 (4%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 78  VDEIQYDVGRIKLKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 137

Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSAEERQRE 578
              +  +R    Q+ERL+ +  A+L   QA+Q   +     S  RA++G     + R+  
Sbjct: 138 ALPSRARRACSEQEERLLRNVVASLA--QALQELST-----SFRRAQSGYLKRMKNREER 190

Query: 579 EQ--------LVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
            Q        L+              +D++ + EQ+  +++ERE  IRQ+   I D+N+I
Sbjct: 191 SQHFFDTSVPLMDDGDDNTLYDRGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEI 250

Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           F+DL  MI +QG ++D I+ NVE S +  E    QL +A  YQKK+RK
Sbjct: 251 FRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 298


>ref|XP_867541.1| PREDICTED: similar to syntaxin 16 isoform b isoform 7 [Canis
           familiaris].
          Length = 305

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 11/228 (4%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 61  VDEIQYDVGRIKLKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 120

Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSAEERQRE 578
              +  +R    Q+ERL+ +  A+L   QA+Q   +     S  RA++G     + R+  
Sbjct: 121 ALPSRARRACSEQEERLLRNVVASLA--QALQELST-----SFRRAQSGYLKRMKNREER 173

Query: 579 EQ--------LVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
            Q        L+              +D++ + EQ+  +++ERE  IRQ+   I D+N+I
Sbjct: 174 SQHFFDTSVPLMDDGDDNTLYDRGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEI 233

Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           F+DL  MI +QG ++D I+ NVE S +  E    QL +A  YQKK+RK
Sbjct: 234 FRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 281


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,243,936
Number of extensions: 908968
Number of successful extensions: 4775
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4445
Number of HSP's successfully gapped: 20
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013466
         (1038 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001230371.1| syntaxin 12 [Sus scrofa].                         450   e-127
Alignment   gi|XP_001926511.1| PREDICTED: syntaxin-7 [Sus scrofa].               232   2e-61
Alignment   gi|XP_003124549.2| PREDICTED: syntaxin-1B-like [Sus scrofa].          79   5e-15
Alignment   gi|XP_003124525.1| PREDICTED: syntaxin-4-like [Sus scrofa].           77   1e-14
Alignment   gi|XP_003122766.2| PREDICTED: syntaxin-3-like [Sus scrofa].           77   2e-14
Alignment   gi|XP_003124470.2| PREDICTED: syntaxin-1A-like [Sus scrofa].          75   5e-14
Alignment   gi|XP_001924932.2| PREDICTED: syntaxin-2-like [Sus scrofa].           72   4e-13
Alignment   gi|NP_001116671.1| syntaxin-16 [Sus scrofa].                          72   7e-13
Alignment   gi|XP_001926274.1| PREDICTED: syntaxin-11-like [Sus scrofa].          55   5e-08
Alignment   gi|XP_001927804.1| PREDICTED: syntaxin-17-like [Sus scrofa].          53   2e-07

>ref|NP_001230371.1| syntaxin 12 [Sus scrofa].
          Length = 276

 Score =  450 bits (1158), Expect = e-127
 Identities = 236/250 (94%), Positives = 236/250 (94%)
 Frame = +3

Query: 132 MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 311
           MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
Sbjct: 1   MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 60

Query: 312 ENLQQLQHSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAV 491
           ENLQQLQHSTNQLAKETN              TSEQRQQKLQKERLMNDFSAALNSFQAV
Sbjct: 61  ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQKLQKERLMNDFSAALNSFQAV 120

Query: 492 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 671
           QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL
Sbjct: 121 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 180

Query: 672 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 851
           IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA
Sbjct: 181 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 240

Query: 852 AYYQKKSRKK 881
           AYYQKKSRKK
Sbjct: 241 AYYQKKSRKK 250


>ref|XP_001926511.1| PREDICTED: syntaxin-7 [Sus scrofa].
          Length = 261

 Score =  232 bits (592), Expect = 2e-61
 Identities = 131/245 (53%), Positives = 174/245 (71%), Gaps = 3/245 (1%)
 Frame = +3

Query: 153 MYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQ 332
           M   PG  G P +    + Q  S NIQ+I+Q + +I+  ++QLGT QD+ +L++ LQQ Q
Sbjct: 1   MSYTPGIGGDPAQ----LAQCISSNIQKITQCSVEIQRTLNQLGTPQDTPELRQQLQQKQ 56

Query: 333 HSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEK 512
             TNQLAKET+               SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +EK
Sbjct: 57  QYTNQLAKETDKYIKEFGSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEK 114

Query: 513 EKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKER 683
           EKE +AR RA SR+S    EE  +E  LVS++S  +  Q+Q Q++E  ITE DL LI ER
Sbjct: 115 EKEFVARVRASSRVSGGFPEETSKERNLVSWESQTQ-PQVQVQDEE--ITEDDLRLIHER 171

Query: 684 ETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQ 863
           E++IRQLEADI+D+N+IFKDL MMIH+QGD+IDSIEANVESSEVHV++A  QL RAA YQ
Sbjct: 172 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESSEVHVQQANQQLSRAADYQ 231

Query: 864 KKSRK 878
           +KSRK
Sbjct: 232 RKSRK 236


>ref|XP_003124549.2| PREDICTED: syntaxin-1B-like [Sus scrofa].
          Length = 288

 Score = 78.6 bits (192), Expect = 5e-15
 Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 8/238 (3%)
 Frame = +3

Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
           +F   ++   G I+++S+   Q+K   S  L       K ++ L+ L     + A +   
Sbjct: 31  EFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKTKQELEDLTADIKKTANKVRS 90

Query: 369 XXXXXXXXXXXXX-----TSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR 533
                             +++ R +K Q   L   F   +  + A Q +  ++ K+ I R
Sbjct: 91  KLKAIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQR 150

Query: 534 ARAGSRLSAEERQREEQLVS--FDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLE 707
               +  +    + E+ L S       +  +M SQ     +T+Q L  I+ R   I +LE
Sbjct: 151 QLEITGRTTTNEELEDMLESGKLAIFTDDIKMDSQ-----MTKQALNEIETRHNEIIKLE 205

Query: 708 ADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
             I +++ +F D+AM++  QG++ID IE NVE S  +VERA    ++A  YQ K+R+K
Sbjct: 206 TSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRK 263


>ref|XP_003124525.1| PREDICTED: syntaxin-4-like [Sus scrofa].
          Length = 297

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 7/247 (2%)
 Frame = +3

Query: 162 NPGAS--GPPLRDFNSIIQTCSGNIQRISQATAQI-KNLMSQLGTKQDSSKLQENLQQLQ 332
           +PG +  G P  +F   ++T    I ++     ++ K  ++ L T      ++++LQ L+
Sbjct: 28  HPGTARLGSPDDEFFQKVRTIRQTIVKLENKVRELEKQQVTILATPLPEESMKQDLQNLR 87

Query: 333 HSTNQLAK----ETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRR 500
               QL +    E                +   R +K Q   L   F   +N   ++Q  
Sbjct: 88  DEIKQLGRDIRAELKAIEPQKEEADENYNSVNTRMRKTQHGVLSQQFVELINKCNSMQSE 147

Query: 501 VSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKE 680
             EK  E I R    +       +  EQ++  DS +    + +   +  +T Q L  I  
Sbjct: 148 YREKNVERIRRQLKITNAGMVSDEELEQML--DSGQSEVFVSNILKDTQVTRQALNEISA 205

Query: 681 RETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYY 860
           R + I+QLE  I ++++IF  LA  +  QG++I+ IE N+ SS  +VER  + ++ A   
Sbjct: 206 RHSEIQQLERSIRELHEIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKMALEN 265

Query: 861 QKKSRKK 881
           QKK+RKK
Sbjct: 266 QKKARKK 272


>ref|XP_003122766.2| PREDICTED: syntaxin-3-like [Sus scrofa].
          Length = 289

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 7/237 (2%)
 Frame = +3

Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
           +F S I+    NI +IS+   + K L S  L       K +++L+QL   T ++ K  N 
Sbjct: 34  EFFSEIEETRLNIDKISEHVEEAKKLYSIILSAPIPEPKTKDDLEQL---TTEIKKRANN 90

Query: 369 XXXXXXXXXXXXXTSEQRQ------QKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIA 530
                          E R       +K Q   L   F   +  +   Q    E+ K  I 
Sbjct: 91  VRNKLKSMERHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDFRERSKGRIQ 150

Query: 531 RARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEA 710
           R    +     + + EE L S +     + +   +    I++Q L  I+ R   I +LE+
Sbjct: 151 RQLEITGKKTTDEELEEMLESGNPAIFTSGIIDSQ----ISKQALSEIEGRHKDIVRLES 206

Query: 711 DILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
            I +++ +F D+AM++ +QG+++D+IE NV  +  HVE+A ++ +RA  YQ ++RKK
Sbjct: 207 SIKELHDMFMDIAMLVENQGEMLDNIELNVMHTVDHVEKAREETKRAVKYQGQARKK 263


>ref|XP_003124470.2| PREDICTED: syntaxin-1A-like [Sus scrofa].
          Length = 288

 Score = 75.5 bits (184), Expect = 5e-14
 Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 6/236 (2%)
 Frame = +3

Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKET-- 362
           +F   ++   G I +I++   ++K   S  L +     K +E L++L     + A +   
Sbjct: 32  EFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 91

Query: 363 ---NXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR 533
              +              +++ R +K Q   L   F   ++ + A Q    E+ K  I R
Sbjct: 92  KLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR 151

Query: 534 ARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEAD 713
               +  +    + E+ L S +     + +       +I++Q L  I+ R + I +LE  
Sbjct: 152 QLEITGRTTTSEELEDMLESGNPAIFASGIIMDS---SISKQALSEIETRHSEIIKLENS 208

Query: 714 ILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
           I +++ +F D+AM++  QG++ID IE NVE S  +VERA    ++A  YQ K+R+K
Sbjct: 209 IRELHDMFMDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRK 264


>ref|XP_001924932.2| PREDICTED: syntaxin-2-like [Sus scrofa].
          Length = 288

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 58/236 (24%), Positives = 108/236 (45%), Gaps = 6/236 (2%)
 Frame = +3

Query: 192 DFNSIIQTCSGNIQRISQATAQIK-NLMSQLGTKQDSSKLQENLQQL----QHSTNQLAK 356
           DF   ++    +I +I+Q   ++K N    L       K++E L+ L    + + N++  
Sbjct: 31  DFFHQVEEIRNSIAKIAQYVEEVKKNHSIILSAPNPEGKIKEELEDLNKEIKKTANKIRT 90

Query: 357 ETNXXXXXXXXXXXXXXTS-EQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR 533
           +                TS + R ++ Q   L   F   +  +   Q    E+ K  I R
Sbjct: 91  KLKSIEQSFDQDESGNRTSVDLRIRRTQHSVLSRKFVEVMTEYNEAQTLFRERSKGRIQR 150

Query: 534 ARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEAD 713
               +  +  + + EE L S +     + + S      IT Q L  I+ R   I +LE  
Sbjct: 151 QLEITGKTTTDDELEEMLESGNPSIFTSDIISDSQ---ITRQALNEIESRHKDIMKLETS 207

Query: 714 ILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
           I +++++F D+AM +  QG++I++IE NV ++  +VE A ++ ++A  Y  K+R+K
Sbjct: 208 IRELHEMFMDMAMFVETQGEMINNIEKNVMNAADYVEHAKEETKKAIKYHSKARRK 263


>ref|NP_001116671.1| syntaxin-16 [Sus scrofa].
          Length = 305

 Score = 71.6 bits (174), Expect = 7e-13
 Identities = 34/82 (41%), Positives = 55/82 (67%)
 Frame = +3

Query: 633 EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 812
           +D++ + EQ+  +++ERE  IRQ+   I D+N+IF+DL  MI +QG ++D I+ +VE + 
Sbjct: 200 DDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYSVEQAC 259

Query: 813 VHVERATDQLQRAAYYQKKSRK 878
           +  E    QL +A  YQKK+RK
Sbjct: 260 MKTEDGLKQLHKAEQYQKKNRK 281


>ref|XP_001926274.1| PREDICTED: syntaxin-11-like [Sus scrofa].
          Length = 287

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 25/248 (10%)
 Frame = +3

Query: 204 IIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKL--QENLQQLQHSTNQLAKETNXXXX 377
           I+++   +IQ +     Q+   + +LG KQ++  L     L  ++  TN +AK+      
Sbjct: 40  ILESLYRDIQELQDENQQLFTDVKRLG-KQNARFLTSMRRLSSIKRDTNSIAKDIKAR-- 96

Query: 378 XXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR---ARAGS 548
                       E   +KL   + +++ + A +   +   R+++ +  ++AR   A    
Sbjct: 97  -----------GESIHRKLSAMKALSEEAQAKHGEHSAVARIAQAQYSALARTFQAAMHE 145

Query: 549 RLSAEERQREE-------QLVSFDSHEEWNQMQSQEDE-------------VAITEQDLE 668
              AE +QRE        QL         NQ++   ++             V      L 
Sbjct: 146 YNQAEMKQRENCKIRIQRQLEIMGKDVSSNQIEDMFEQGKWDVFSENLLADVKGARAALN 205

Query: 669 LIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQR 848
            I+ R   + +LE+ I D++ +F  +AM++  Q D +D IE NV+ +  +  +A  Q+++
Sbjct: 206 EIENRHREMLRLESRIRDLHDLFLQMAMLVEQQADTLDVIEFNVQKTLDYTGQAKVQVRK 265

Query: 849 AAYYQKKS 872
           A  Y+KK+
Sbjct: 266 AVQYKKKN 273


>ref|XP_001927804.1| PREDICTED: syntaxin-17-like [Sus scrofa].
          Length = 302

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
 Frame = +3

Query: 591 SFDSHEEWNQMQSQEDEVAITE--QDLELIKERETAIRQLEADILDVNQIFKDLAMMIHD 764
           +F + E+  + QS     A+ E  QD    +  ET    LEAD+++++Q+  D +++++ 
Sbjct: 140 AFHTTEDETEPQSMTQIYALPEIPQDQNAAESWET----LEADLIELSQLVTDFSLLVNS 195

Query: 765 QGDLIDSIEANVESSEVHVERATDQLQRAAYYQ 863
           Q + IDSIE +V S+ V+VE  T  L +AA Y+
Sbjct: 196 QQEKIDSIEDHVNSAAVNVEEGTKNLGKAAKYK 228


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,311,423
Number of extensions: 562762
Number of successful extensions: 2603
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2530
Number of HSP's successfully gapped: 10
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013466
         (1038 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_598648.1| syntaxin-12 [Mus musculus].                          431   e-121
Alignment   gi|NP_058077.2| syntaxin-7 [Mus musculus].                           228   8e-60
Alignment   gi|NP_001095895.1| syntaxin-16 isoform d [Mus musculus].              79   8e-15
Alignment   gi|NP_001095894.1| syntaxin-16 isoform c [Mus musculus].              79   8e-15
Alignment   gi|NP_077725.1| syntaxin-1B [Mus musculus].                           79   8e-15
Alignment   gi|NP_001095893.1| syntaxin-16 isoform b [Mus musculus].              79   8e-15
Alignment   gi|NP_766263.2| syntaxin-16 isoform a [Mus musculus].                 79   8e-15
Alignment   gi|NP_689344.1| syntaxin-3 isoform A [Mus musculus].                  78   1e-14
Alignment   gi|NP_033320.1| syntaxin-4 [Mus musculus].                            77   2e-14
Alignment   gi|NP_058081.2| syntaxin-1A [Mus musculus].                           75   8e-14

>ref|NP_598648.1| syntaxin-12 [Mus musculus].
          Length = 274

 Score =  431 bits (1109), Expect = e-121
 Identities = 225/250 (90%), Positives = 230/250 (92%)
 Frame = +3

Query: 132 MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 311
           MSYGPLDMYRNPG SGP  RDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
Sbjct: 1   MSYGPLDMYRNPGPSGPQPRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 60

Query: 312 ENLQQLQHSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAV 491
           ENLQQLQHSTNQLAKETN               SEQRQQKLQKERLMNDFS+ALN+FQ V
Sbjct: 61  ENLQQLQHSTNQLAKETNELLKELGSLPLPLSASEQRQQKLQKERLMNDFSSALNNFQVV 120

Query: 492 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 671
           QR+VSEKEKESIARARAGSRLSAE+RQREEQLVSFDSHEEWNQMQSQE+E AITEQDLEL
Sbjct: 121 QRKVSEKEKESIARARAGSRLSAEDRQREEQLVSFDSHEEWNQMQSQEEEAAITEQDLEL 180

Query: 672 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 851
           IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA
Sbjct: 181 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 240

Query: 852 AYYQKKSRKK 881
           AYYQKKSRKK
Sbjct: 241 AYYQKKSRKK 250


>ref|NP_058077.2| syntaxin-7 [Mus musculus].
          Length = 261

 Score =  228 bits (580), Expect = 8e-60
 Identities = 128/245 (52%), Positives = 173/245 (70%), Gaps = 3/245 (1%)
 Frame = +3

Query: 153 MYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQ 332
           M   PG  G    D   + Q  S NIQ+I+Q + +I+  ++QLGT QDS +L++ LQQ Q
Sbjct: 1   MSYTPGIGG----DSAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQ 56

Query: 333 HSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEK 512
             TNQLAKET+               SEQRQ+K+QK+RL+ +F+ +L +FQ  QR+ +E+
Sbjct: 57  QYTNQLAKETDKYIKEFGSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKAQRQAAER 114

Query: 513 EKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKER 683
           EKE +AR RA SR+S    E+  +E+ LVS++S  +  Q+Q Q++E  ITE DL LI ER
Sbjct: 115 EKEFVARVRASSRVSGGFPEDSSKEKNLVSWESQTQ-PQVQVQDEE--ITEDDLRLIHER 171

Query: 684 ETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQ 863
           E++IRQLEADI+D+N+IFKDL MMIH+QGD+IDSIEANVES+EVHV++A  QL RAA YQ
Sbjct: 172 ESSIRQLEADIMDINEIFKDLGMMIHEQGDMIDSIEANVESAEVHVQQANQQLSRAADYQ 231

Query: 864 KKSRK 878
           +KSRK
Sbjct: 232 RKSRK 236


>ref|NP_001095895.1| syntaxin-16 isoform d [Mus musculus].
          Length = 305

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 4/221 (1%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 61  VDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEVTQLFHRCQRAVQ 120

Query: 399 XXXTSEQRQQKLQKERLMNDFSAAL-NSFQAVQRRVSEKEKESIARARAGSRLSAEERQR 575
              +  +R    Q+ERL+ +  A+L  + Q +       + + + R +     S      
Sbjct: 121 ALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMKNREERSQHFFDT 180

Query: 576 EEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMM 755
              L+              +D++ + EQ+  +++ERE  IRQ+   I D+N+IF+DL  M
Sbjct: 181 PVPLMDDGDDATLYGQGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAM 240

Query: 756 IHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           I +QG ++D I+ NVE S V  E    QL +A  YQKK+RK
Sbjct: 241 IVEQGTVLDRIDYNVEQSCVKTEDGLKQLHKAEQYQKKNRK 281


>ref|NP_001095894.1| syntaxin-16 isoform c [Mus musculus].
          Length = 309

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 4/221 (1%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 65  VDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEVTQLFHRCQRAVQ 124

Query: 399 XXXTSEQRQQKLQKERLMNDFSAAL-NSFQAVQRRVSEKEKESIARARAGSRLSAEERQR 575
              +  +R    Q+ERL+ +  A+L  + Q +       + + + R +     S      
Sbjct: 125 ALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMKNREERSQHFFDT 184

Query: 576 EEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMM 755
              L+              +D++ + EQ+  +++ERE  IRQ+   I D+N+IF+DL  M
Sbjct: 185 PVPLMDDGDDATLYGQGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAM 244

Query: 756 IHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           I +QG ++D I+ NVE S V  E    QL +A  YQKK+RK
Sbjct: 245 IVEQGTVLDRIDYNVEQSCVKTEDGLKQLHKAEQYQKKNRK 285


>ref|NP_077725.1| syntaxin-1B [Mus musculus].
          Length = 288

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 8/238 (3%)
 Frame = +3

Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
           +F   ++   G I+++S+   Q+K   S  L       K ++ L+ L     + A +   
Sbjct: 31  EFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKTKQELEDLTADIKKTANKVRS 90

Query: 369 XXXXXXXXXXXXX-----TSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR 533
                             +++ R +K Q   L   F   +  + A Q +  ++ K+ I R
Sbjct: 91  KLKAIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQR 150

Query: 534 ARAGSRLSAEERQREEQLVS--FDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLE 707
               +  +    + E+ L S       +  +M SQ     +T+Q L  I+ R   I +LE
Sbjct: 151 QLEITGRTTTNEELEDMLESGKLAIFTDDIKMDSQ-----MTKQALNEIETRHNEIIKLE 205

Query: 708 ADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
             I +++ +F D+AM++  QG++ID IE NVE S  +VERA    ++A  YQ K+R+K
Sbjct: 206 TSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRK 263


>ref|NP_001095893.1| syntaxin-16 isoform b [Mus musculus].
          Length = 322

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 4/221 (1%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 78  VDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEVTQLFHRCQRAVQ 137

Query: 399 XXXTSEQRQQKLQKERLMNDFSAAL-NSFQAVQRRVSEKEKESIARARAGSRLSAEERQR 575
              +  +R    Q+ERL+ +  A+L  + Q +       + + + R +     S      
Sbjct: 138 ALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMKNREERSQHFFDT 197

Query: 576 EEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMM 755
              L+              +D++ + EQ+  +++ERE  IRQ+   I D+N+IF+DL  M
Sbjct: 198 PVPLMDDGDDATLYGQGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAM 257

Query: 756 IHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           I +QG ++D I+ NVE S V  E    QL +A  YQKK+RK
Sbjct: 258 IVEQGTVLDRIDYNVEQSCVKTEDGLKQLHKAEQYQKKNRK 298


>ref|NP_766263.2| syntaxin-16 isoform a [Mus musculus].
          Length = 326

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 4/221 (1%)
 Frame = +3

Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
           +  I     +IK  M +L +  D    +  L    + +H+     +E             
Sbjct: 82  VDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEVTQLFHRCQRAVQ 141

Query: 399 XXXTSEQRQQKLQKERLMNDFSAAL-NSFQAVQRRVSEKEKESIARARAGSRLSAEERQR 575
              +  +R    Q+ERL+ +  A+L  + Q +       + + + R +     S      
Sbjct: 142 ALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMKNREERSQHFFDT 201

Query: 576 EEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMM 755
              L+              +D++ + EQ+  +++ERE  IRQ+   I D+N+IF+DL  M
Sbjct: 202 PVPLMDDGDDATLYGQGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAM 261

Query: 756 IHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           I +QG ++D I+ NVE S V  E    QL +A  YQKK+RK
Sbjct: 262 IVEQGTVLDRIDYNVEQSCVKTEDGLKQLHKAEQYQKKNRK 302


>ref|NP_689344.1| syntaxin-3 isoform A [Mus musculus].
          Length = 289

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 7/237 (2%)
 Frame = +3

Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
           +F S I+    NI +IS+   + K L S  L       K +++L+QL   T ++ K  N 
Sbjct: 34  EFFSEIEETRLNIDKISEHVEEAKKLYSIILSAPIPEPKTKDDLEQL---TTEIKKRANN 90

Query: 369 XXXXXXXXXXXXXTSEQRQ------QKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIA 530
                          E R       +K Q   L   F   +  +   Q    E+ K  I 
Sbjct: 91  VRNKLKSMEKHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDFRERSKGRIQ 150

Query: 531 RARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEA 710
           R    +     + + EE L S +     + +   +    I++Q L  I+ R   I +LE+
Sbjct: 151 RQLEITGKKTTDEELEEMLESGNPAIFTSGIIDSQ----ISKQALSEIEGRHKDIVRLES 206

Query: 711 DILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
            I +++ +F D+AM++ +QG+++D+IE NV  +  HVE+A D+ +RA  YQ ++RKK
Sbjct: 207 SIKELHDMFMDIAMLVENQGEMLDNIELNVMHTVDHVEKARDETKRAMKYQGQARKK 263


>ref|NP_033320.1| syntaxin-4 [Mus musculus].
          Length = 298

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 5/240 (2%)
 Frame = +3

Query: 177 GPPLRDFNSIIQTCSGNIQRISQATAQI-KNLMSQLGTKQDSSKLQENLQQLQHSTNQLA 353
           G P  +F   +QT    + ++     ++ K  ++ L T      +++ LQ L+    QL 
Sbjct: 35  GSPDDEFFQKVQTIRQTMAKLESKVRELEKQQVTILATPLPEESMKQGLQNLREEIKQLG 94

Query: 354 KETNXXXXXXXXXXXXXXTS----EQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKE 521
           +E                 +      R +K Q   L   F   +N   ++Q    EK  E
Sbjct: 95  REVRAQLKAIEPQKEEADENYNSVNTRMKKTQHGVLSQQFVELINKCNSMQSEYREKNVE 154

Query: 522 SIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQ 701
            I R    +       +  EQ++  DS +    + +   +  +T Q L  I  R + I+Q
Sbjct: 155 RIRRQLKITNAGMVSDEELEQML--DSGQSEVFVSNILKDTQVTRQALNEISARHSEIQQ 212

Query: 702 LEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
           LE  I ++++IF  LA  +  QG++I+ IE N+ SS  +VER  + ++ A   QKK+RKK
Sbjct: 213 LERSIRELHEIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKIALENQKKARKK 272


>ref|NP_058081.2| syntaxin-1A [Mus musculus].
          Length = 288

 Score = 75.1 bits (183), Expect = 8e-14
 Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 6/236 (2%)
 Frame = +3

Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKET-- 362
           +F   ++   G I +I++   ++K   S  L +     K +E L++L     + A +   
Sbjct: 32  EFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 91

Query: 363 ---NXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR 533
              +              +++ R +K Q   L   F   ++ + A Q    E+ K  I R
Sbjct: 92  KLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR 151

Query: 534 ARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEAD 713
               +  +    + E+ L S +     + +       +I++Q L  I+ R + I +LE  
Sbjct: 152 QLEITGRTTTSEELEDMLESGNPAIFASGIIMDS---SISKQALSEIETRHSEIIKLETS 208

Query: 714 ILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
           I +++ +F D+AM++  QG++ID IE NVE +  +VERA    ++A  YQ K+R+K
Sbjct: 209 IRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 264


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,258,248
Number of extensions: 750102
Number of successful extensions: 3715
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3420
Number of HSP's successfully gapped: 14
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013466
         (1038 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_803173.1| syntaxin-12 [Homo sapiens].                          439   e-123
Alignment   gi|NP_003560.2| syntaxin-7 [Homo sapiens].                           229   3e-60
Alignment   gi|NP_659440.2| t-SNARE domain-containing protein 1 [Homo sapie...   122   7e-28
Alignment   gi|NP_443106.1| syntaxin-1B [Homo sapiens].                           79   9e-15
Alignment   gi|NP_001171511.1| syntaxin-3 isoform 2 [Homo sapiens].               78   2e-14
Alignment   gi|NP_004168.1| syntaxin-3 isoform 1 [Homo sapiens].                  78   2e-14
Alignment   gi|NP_004595.2| syntaxin-4 [Homo sapiens].                            77   3e-14
Alignment   gi|NP_001191797.1| syntaxin-16 isoform e [Homo sapiens].              77   3e-14
Alignment   gi|NP_001128245.1| syntaxin-16 isoform d [Homo sapiens].              77   3e-14
Alignment   gi|NP_001128244.1| syntaxin-16 isoform c [Homo sapiens].              77   3e-14

>ref|NP_803173.1| syntaxin-12 [Homo sapiens].
          Length = 276

 Score =  439 bits (1130), Expect = e-123
 Identities = 230/250 (92%), Positives = 234/250 (93%)
 Frame = +3

Query: 132 MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 311
           MSYGPLDMYRNPG SGP LRDF+SIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
Sbjct: 1   MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 60

Query: 312 ENLQQLQHSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAV 491
           ENLQQLQHSTNQLAKETN              TSEQRQQ+LQKERLMNDFSAALN+FQAV
Sbjct: 61  ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAV 120

Query: 492 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 671
           QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL
Sbjct: 121 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 180

Query: 672 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 851
           IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERAT+QLQRA
Sbjct: 181 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRA 240

Query: 852 AYYQKKSRKK 881
           AYYQKKSRKK
Sbjct: 241 AYYQKKSRKK 250


>ref|NP_003560.2| syntaxin-7 [Homo sapiens].
          Length = 261

 Score =  229 bits (584), Expect = 3e-60
 Identities = 128/245 (52%), Positives = 174/245 (71%), Gaps = 3/245 (1%)
 Frame = +3

Query: 153 MYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQ 332
           M   PG  G P +    + Q  S NIQ+I+Q + +I+  ++QLGT QDS +L++ LQQ Q
Sbjct: 1   MSYTPGVGGDPAQ----LAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQ 56

Query: 333 HSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEK 512
             TNQLAKET+               SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +E+
Sbjct: 57  QYTNQLAKETDKYIKEFGSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAER 114

Query: 513 EKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKER 683
           EKE +AR RA SR+S    E+  +E  LVS++S  +  Q+Q Q++E  ITE DL LI ER
Sbjct: 115 EKEFVARVRASSRVSGSFPEDSSKERNLVSWESQTQ-PQVQVQDEE--ITEDDLRLIHER 171

Query: 684 ETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQ 863
           E++IRQLEADI+D+N+IFKDL MMIH+QGD+IDSIEANVE++EVHV++A  QL RAA YQ
Sbjct: 172 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQ 231

Query: 864 KKSRK 878
           +KSRK
Sbjct: 232 RKSRK 236


>ref|NP_659440.2| t-SNARE domain-containing protein 1 [Homo sapiens].
          Length = 513

 Score =  122 bits (305), Expect = 7e-28
 Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 4/233 (1%)
 Frame = +3

Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQ-LAKETNX 368
           +   + Q  S N+ RI+ +   ++  +  LGT  D+ +L+++L   Q  TN+ +A   + 
Sbjct: 256 NLQELFQEMSANVFRINSSVTSLERSLQSLGTPSDTQELRDSLHTAQQETNKTIAASASS 315

Query: 369 XXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGS 548
                            +Q++ Q +RL    S A+  +  VQ++++EK +  +  A+ GS
Sbjct: 316 VKQMAELLRSSCPQERLQQERPQLDRLKTQLSDAIQCYGVVQKKIAEKSRALLPMAQRGS 375

Query: 549 RLSAEERQRE---EQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADIL 719
           + S +    E   ++ V   S   W Q Q Q     ITE+DLE I+ RE AI Q+E+++L
Sbjct: 376 KQSPQAPFAELADDEKVFNGSDNMW-QGQEQALLPDITEEDLEAIRLREEAILQMESNLL 434

Query: 720 DVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
           DVNQI KDLA M+ +QG+ +DSIEA++E++  H E A   L  A+ +Q +  K
Sbjct: 435 DVNQIIKDLASMVSEQGEAVDSIEASLEAASSHAEAARQLLAGASRHQLQRHK 487


>ref|NP_443106.1| syntaxin-1B [Homo sapiens].
          Length = 288

 Score = 78.6 bits (192), Expect = 9e-15
 Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 8/238 (3%)
 Frame = +3

Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
           +F   ++   G I+++S+   Q+K   S  L       K ++ L+ L     + A +   
Sbjct: 31  EFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKTKQELEDLTADIKKTANKVRS 90

Query: 369 XXXXXXXXXXXXX-----TSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR 533
                             +++ R +K Q   L   F   +  + A Q +  ++ K+ I R
Sbjct: 91  KLKAIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQR 150

Query: 534 ARAGSRLSAEERQREEQLVS--FDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLE 707
               +  +    + E+ L S       +  +M SQ     +T+Q L  I+ R   I +LE
Sbjct: 151 QLEITGRTTTNEELEDMLESGKLAIFTDDIKMDSQ-----MTKQALNEIETRHNEIIKLE 205

Query: 708 ADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
             I +++ +F D+AM++  QG++ID IE NVE S  +VERA    ++A  YQ K+R+K
Sbjct: 206 TSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRK 263


>ref|NP_001171511.1| syntaxin-3 isoform 2 [Homo sapiens].
          Length = 277

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 7/237 (2%)
 Frame = +3

Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
           +F S I+    NI +IS+   + K L S  L       K +++L+QL   T ++ K  N 
Sbjct: 34  EFFSEIEETRLNIDKISEHVEEAKKLYSIILSAPIPEPKTKDDLEQL---TTEIKKRANN 90

Query: 369 XXXXXXXXXXXXXTSEQRQ------QKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIA 530
                          E R       +K Q   L   F   +  +   Q    E+ K  I 
Sbjct: 91  VRNKLKSMEKHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDFRERSKGRIQ 150

Query: 531 RARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEA 710
           R    +     + + EE L S +     + +   +    I++Q L  I+ R   I +LE+
Sbjct: 151 RQLEITGKKTTDEELEEMLESGNPAIFTSGIIDSQ----ISKQALSEIEGRHKDIVRLES 206

Query: 711 DILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
            I +++ +F D+AM++ +QG+++D+IE NV  +  HVE+A D+ ++A  YQ ++RKK
Sbjct: 207 SIKELHDMFMDIAMLVENQGEMLDNIELNVMHTVDHVEKARDETKKAVKYQSQARKK 263


>ref|NP_004168.1| syntaxin-3 isoform 1 [Homo sapiens].
          Length = 289

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 7/237 (2%)
 Frame = +3

Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
           +F S I+    NI +IS+   + K L S  L       K +++L+QL   T ++ K  N 
Sbjct: 34  EFFSEIEETRLNIDKISEHVEEAKKLYSIILSAPIPEPKTKDDLEQL---TTEIKKRANN 90

Query: 369 XXXXXXXXXXXXXTSEQRQ------QKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIA 530
                          E R       +K Q   L   F   +  +   Q    E+ K  I 
Sbjct: 91  VRNKLKSMEKHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDFRERSKGRIQ 150

Query: 531 RARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEA 710
           R    +     + + EE L S +     + +   +    I++Q L  I+ R   I +LE+
Sbjct: 151 RQLEITGKKTTDEELEEMLESGNPAIFTSGIIDSQ----ISKQALSEIEGRHKDIVRLES 206

Query: 711 DILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
            I +++ +F D+AM++ +QG+++D+IE NV  +  HVE+A D+ ++A  YQ ++RKK
Sbjct: 207 SIKELHDMFMDIAMLVENQGEMLDNIELNVMHTVDHVEKARDETKKAVKYQSQARKK 263


>ref|NP_004595.2| syntaxin-4 [Homo sapiens].
          Length = 297

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 7/247 (2%)
 Frame = +3

Query: 162 NPGAS--GPPLRDFNSIIQTCSGNIQRISQATAQI-KNLMSQLGTKQDSSKLQENLQQLQ 332
           +PG +  G P  +F   ++T    I ++     ++ K  ++ L T      +++ LQ L+
Sbjct: 28  HPGTARLGSPDEEFFHKVRTIRQTIVKLGNKVQELEKQQVTILATPLPEESMKQELQNLR 87

Query: 333 HSTNQLAKETNXXXXXXXXXXXXXXTS----EQRQQKLQKERLMNDFSAALNSFQAVQRR 500
               QL +E                 +      R +K Q   L   F   +N   ++Q  
Sbjct: 88  DEIKQLGREIRLQLKAIEPQKEEADENYNSVNTRMRKTQHGVLSQQFVELINKCNSMQSE 147

Query: 501 VSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKE 680
             EK  E I R    +       +  EQ++  DS +    + +   +  +T Q L  I  
Sbjct: 148 YREKNVERIRRQLKITNAGMVSDEELEQML--DSGQSEVFVSNILKDTQVTRQALNEISA 205

Query: 681 RETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYY 860
           R + I+QLE  I +++ IF  LA  +  QG++I+ IE N+ SS  +VER  + ++ A   
Sbjct: 206 RHSEIQQLERSIRELHDIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKTALEN 265

Query: 861 QKKSRKK 881
           QKK+RKK
Sbjct: 266 QKKARKK 272


>ref|NP_001191797.1| syntaxin-16 isoform e [Homo sapiens].
          Length = 272

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 37/82 (45%), Positives = 55/82 (67%)
 Frame = +3

Query: 633 EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 812
           ED++ + EQ+  +++ERE  IRQ+   I D+N+IF+DL  MI +QG ++D I+ NVE S 
Sbjct: 167 EDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSC 226

Query: 813 VHVERATDQLQRAAYYQKKSRK 878
           +  E    QL +A  YQKK+RK
Sbjct: 227 IKTEDGLKQLHKAEQYQKKNRK 248


>ref|NP_001128245.1| syntaxin-16 isoform d [Homo sapiens].
          Length = 308

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 37/82 (45%), Positives = 55/82 (67%)
 Frame = +3

Query: 633 EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 812
           ED++ + EQ+  +++ERE  IRQ+   I D+N+IF+DL  MI +QG ++D I+ NVE S 
Sbjct: 203 EDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSC 262

Query: 813 VHVERATDQLQRAAYYQKKSRK 878
           +  E    QL +A  YQKK+RK
Sbjct: 263 IKTEDGLKQLHKAEQYQKKNRK 284


>ref|NP_001128244.1| syntaxin-16 isoform c [Homo sapiens].
          Length = 321

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 37/82 (45%), Positives = 55/82 (67%)
 Frame = +3

Query: 633 EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 812
           ED++ + EQ+  +++ERE  IRQ+   I D+N+IF+DL  MI +QG ++D I+ NVE S 
Sbjct: 216 EDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSC 275

Query: 813 VHVERATDQLQRAAYYQKKSRK 878
           +  E    QL +A  YQKK+RK
Sbjct: 276 IKTEDGLKQLHKAEQYQKKNRK 297


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,594,204
Number of extensions: 892961
Number of successful extensions: 4297
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4090
Number of HSP's successfully gapped: 16
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013466
         (1038 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         492   e-136
Sscrofa_Chr01                                                          70   3e-09

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  492 bits (248), Expect = e-136
 Identities = 248/248 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2        agtgcgcacgcagcttcatccccttcccagccctttctcttcccggtttccctgtcagcc 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78460556 agtgcgcacgcagcttcatccccttcccagccctttctcttcccggtttccctgtcagcc 78460615

                                                                            
Query: 62       tgcgggtcgggtctggcggctgcttccggtaggagcgcggtgcagggcaagtcggtctcg 121
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78460616 tgcgggtcgggtctggcggctgcttccggtaggagcgcggtgcagggcaagtcggtctcg 78460675

                                                                            
Query: 122      gctcctcgtcatgtcctacggtcccctagacatgtaccggaacccgggggcctcggggcc 181
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78460676 gctcctcgtcatgtcctacggtcccctagacatgtaccggaacccgggggcctcggggcc 78460735

                                                                            
Query: 182      cccgctccgggacttcaacagcatcatccagacgtgcagtggcaacatccagcggatcag 241
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78460736 cccgctccgggacttcaacagcatcatccagacgtgcagtggcaacatccagcggatcag 78460795

                        
Query: 242      ccaagcca 249
                ||||||||
Sbjct: 78460796 ccaagcca 78460803



 Score =  281 bits (142), Expect = 4e-73
 Identities = 142/142 (100%)
 Strand = Plus / Plus

                                                                            
Query: 417      cagcgccagcagaaacttcagaaggaacgtctcatgaatgacttctctgcagccttaaac 476
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78485160 cagcgccagcagaaacttcagaaggaacgtctcatgaatgacttctctgcagccttaaac 78485219

                                                                            
Query: 477      agtttccaggctgtgcagagaagggtgtctgaaaaggaaaaggagagtattgccagagca 536
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78485220 agtttccaggctgtgcagagaagggtgtctgaaaaggaaaaggagagtattgccagagca 78485279

                                      
Query: 537      agagctggatctcgtctttctg 558
                ||||||||||||||||||||||
Sbjct: 78485280 agagctggatctcgtctttctg 78485301



 Score =  242 bits (122), Expect = 3e-61
 Identities = 144/149 (96%), Gaps = 2/149 (1%)
 Strand = Plus / Plus

                                                                            
Query: 860      tcagaaaaaatctcgcaagaagatctgtatcctgatccttgtcctgtcagtgattattgt 919
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78500452 tcagaaaaaatctcgcaagaagatctgtatcctgatccttgtcctgtcagtgattattgt 78500511

                                                                            
Query: 920      agtcttgggaattattttgtggataattctaggtaataaatgaagtgatttgcctccaag 979
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 78500512 agtcttgggaattattttgtggataattctaggtaataaatgaagtga-ttgcctccaag 78500570

                                             
Query: 980      ccttctt-cgctgactggnttcaggggca 1007
                ||||||| |||||||||  |||| |||||
Sbjct: 78500571 ccttcttccgctgactgttttcaagggca 78500599



 Score =  218 bits (110), Expect = 5e-54
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                            
Query: 599      cagccatgaggagtggaaccagatgcagagccaggaggatgaggtggccatcaccgaaca 658
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78492763 cagccatgaggagtggaaccagatgcagagccaggaggatgaggtggccatcaccgaaca 78492822

                                                                  
Query: 659      ggatctggaactcattaaagagagggaaacagcgattcggcagctagagg 708
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78492823 ggatctggaactcattaaagagagggaaacagcgattcggcagctagagg 78492872



 Score =  198 bits (100), Expect = 4e-48
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                            
Query: 320      gcaacagttacaacactctacaaatcagcttgccaaggaaacaaatgaattactgaagga 379
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78477786 gcaacagttacaacactctacaaatcagcttgccaaggaaacaaatgaattactgaagga 78477845

                                                        
Query: 380      attagggtccttgccccttcctttatctacttcagaacag 419
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 78477846 attagggtccttgccccttcctttatctacttcagaacag 78477885



 Score =  167 bits (84), Expect = 2e-38
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                            
Query: 780      gacagcatagaagccaatgtggaaagctcagaggtgcatgtagaaagagctactgatcag 839
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78498336 gacagcatagaagccaatgtggaaagctcagaggtgcatgtagaaagagctactgatcag 78498395

                                        
Query: 840      ttacagcgagctgcttactatcag 863
                ||||||||||||||||||||||||
Sbjct: 78498396 ttacagcgagctgcttactatcag 78498419



 Score =  149 bits (75), Expect = 4e-33
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                            
Query: 706      aggctgacattttggatgtcaatcagatatttaaagatttggccatgatgatccatgacc 765
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78496794 aggctgacattttggatgtcaatcagatatttaaagatttggccatgatgatccatgacc 78496853

                               
Query: 766      agggtgatctaattg 780
                |||||||||||||||
Sbjct: 78496854 agggtgatctaattg 78496868



 Score =  141 bits (71), Expect = 9e-31
 Identities = 71/71 (100%)
 Strand = Plus / Plus

                                                                            
Query: 250      ctgctcagataaagaatttgatgagccaactgggaactaagcaggattccagcaagttac 309
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78476142 ctgctcagataaagaatttgatgagccaactgggaactaagcaggattccagcaagttac 78476201

                           
Query: 310      aggaaaacctg 320
                |||||||||||
Sbjct: 78476202 aggaaaacctg 78476212



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                            
Query: 558      gcggaggagaggcaaagagaggaacagctcgtctcgtttgacag 601
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78490841 gcggaggagaggcaaagagaggaacagctcgtctcgtttgacag 78490884


>Sscrofa_Chr01 
||          Length = 315321322

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                                   
Query: 783      agcatagaagccaatgtggaaagctcagaggtgca 817
                |||||||||||||||||||||||||||||||||||
Sbjct: 34753317 agcatagaagccaatgtggaaagctcagaggtgca 34753351


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,054,170
Number of extensions: 233
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 10
Length of query: 1038
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1017
Effective length of database: 2,808,413,156
Effective search space: 2856156179652
Effective search space used: 2856156179652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)