Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013466
(1038 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094523.1| syntaxin-12 [Bos taurus]. 447 e-126
Alignment gi|NP_001071332.1| syntaxin-7 [Bos taurus]. 233 3e-61
Alignment gi|NP_001075915.1| t-SNARE domain-containing protein 1 [Bos tau... 114 1e-25
Alignment gi|XP_002692465.1| PREDICTED: syntaxin 16-like isoform 4 [Bos t... 79 7e-15
Alignment gi|XP_002692464.1| PREDICTED: syntaxin 16-like isoform 3 [Bos t... 79 7e-15
Alignment gi|XP_002692463.1| PREDICTED: syntaxin 16-like isoform 2 [Bos t... 79 7e-15
Alignment gi|XP_002692462.1| PREDICTED: syntaxin 16-like isoform 1 [Bos t... 79 7e-15
Alignment gi|XP_597848.2| PREDICTED: syntaxin 16-like isoform 1 [Bos taur... 79 7e-15
Alignment gi|XP_002701149.1| PREDICTED: syntaxin 16-like [Bos taurus]. 79 7e-15
Alignment gi|XP_002701148.1| PREDICTED: syntaxin 16-like [Bos taurus]. 79 7e-15
>ref|NP_001094523.1| syntaxin-12 [Bos taurus].
Length = 274
Score = 447 bits (1149), Expect = e-126
Identities = 234/250 (93%), Positives = 234/250 (93%)
Frame = +3
Query: 132 MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 311
MSYGPLDMYRNPG SGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
Sbjct: 1 MSYGPLDMYRNPGGSGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 60
Query: 312 ENLQQLQHSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAV 491
ENLQQLQHSTNQLAKETN TSEQRQQKLQKERLMNDFSAALNSFQAV
Sbjct: 61 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQKLQKERLMNDFSAALNSFQAV 120
Query: 492 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 671
QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQ QEDEVAITEQDLEL
Sbjct: 121 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQRQEDEVAITEQDLEL 180
Query: 672 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 851
IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA
Sbjct: 181 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 240
Query: 852 AYYQKKSRKK 881
AYYQKKSRKK
Sbjct: 241 AYYQKKSRKK 250
>ref|NP_001071332.1| syntaxin-7 [Bos taurus].
Length = 261
Score = 233 bits (593), Expect = 3e-61
Identities = 129/245 (52%), Positives = 174/245 (71%), Gaps = 3/245 (1%)
Frame = +3
Query: 153 MYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQ 332
M PG G P + + Q S NIQ+I+Q +A+I+ ++QLGT QDS +L++ LQQ Q
Sbjct: 1 MSYTPGVGGDPAQ----LAQRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQ 56
Query: 333 HSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEK 512
TNQLAKET+ S+QRQ+K+QK+RL+ +F+A+L +FQ VQR+ +E+
Sbjct: 57 QYTNQLAKETDKYIKEFGSLPTTP--SDQRQRKIQKDRLVAEFTASLTNFQKVQRQAAER 114
Query: 513 EKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKER 683
EKE +AR RA SR+S EE +E LVS++S Q Q+Q + ITE DL LI+ER
Sbjct: 115 EKEFVARVRASSRVSGGFPEESSKERNLVSWESQ---TQPQAQLQDEEITEDDLRLIQER 171
Query: 684 ETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQ 863
E++IRQLEADI+D+N+IFKDL MMIH+QGD+IDSIEANVE++EVHV++A QL RAA YQ
Sbjct: 172 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQ 231
Query: 864 KKSRK 878
+KSRK
Sbjct: 232 RKSRK 236
>ref|NP_001075915.1| t-SNARE domain-containing protein 1 [Bos taurus].
Length = 496
Score = 114 bits (285), Expect = 1e-25
Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 3/232 (1%)
Frame = +3
Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNXX 371
D + Q S NI +I+ ++ + LG D+ +L+++L +Q TN+ T
Sbjct: 243 DLQELFQETSANIFQINSNVTSLEQSLQSLGMPGDTQELRDSLHTVQQETNR----TIAA 298
Query: 372 XXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSR 551
+Q++LQ +RL S A+ + VQ++++EK + + A+ G +
Sbjct: 299 SAGALKQTAELLRGCPQQERLQLDRLKTQLSDAVQRYGVVQKKIAEKSRALLPTAQRGGK 358
Query: 552 LSAEERQREEQLVS---FDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILD 722
+ + E F+ + Q ITE+DLE I+ RE AI Q+E+D+LD
Sbjct: 359 QQSPQAAFAELADDEKIFNGGDGVWPGHEQALLPEITEEDLEAIRLREEAILQIESDLLD 418
Query: 723 VNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
VNQI KDLA M+ +QG+ IDSIEA +E++ H E A++ L A+ +Q + RK
Sbjct: 419 VNQIIKDLASMVSEQGEAIDSIEAGLEAASSHTEAASELLAGASRHQLRRRK 470
>ref|XP_002692465.1| PREDICTED: syntaxin 16-like isoform 4 [Bos taurus].
Length = 322
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 78 VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 137
Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
+ +R Q+ERL+ + A+L QA+Q S + +S R +R +
Sbjct: 138 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 195
Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
+ D E+ N + + ++++ + EQ+ L++ERE IRQ+ I D+N+IF+DL
Sbjct: 196 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 254
Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
MI +QG ++D I+ NVE S + E QL +A YQKK+RK
Sbjct: 255 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 298
>ref|XP_002692464.1| PREDICTED: syntaxin 16-like isoform 3 [Bos taurus].
Length = 305
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 61 VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 120
Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
+ +R Q+ERL+ + A+L QA+Q S + +S R +R +
Sbjct: 121 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 178
Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
+ D E+ N + + ++++ + EQ+ L++ERE IRQ+ I D+N+IF+DL
Sbjct: 179 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 237
Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
MI +QG ++D I+ NVE S + E QL +A YQKK+RK
Sbjct: 238 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 281
>ref|XP_002692463.1| PREDICTED: syntaxin 16-like isoform 2 [Bos taurus].
Length = 326
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 82 VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 141
Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
+ +R Q+ERL+ + A+L QA+Q S + +S R +R +
Sbjct: 142 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 199
Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
+ D E+ N + + ++++ + EQ+ L++ERE IRQ+ I D+N+IF+DL
Sbjct: 200 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 258
Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
MI +QG ++D I+ NVE S + E QL +A YQKK+RK
Sbjct: 259 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 302
>ref|XP_002692462.1| PREDICTED: syntaxin 16-like isoform 1 [Bos taurus].
Length = 309
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 65 VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 124
Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
+ +R Q+ERL+ + A+L QA+Q S + +S R +R +
Sbjct: 125 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 182
Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
+ D E+ N + + ++++ + EQ+ L++ERE IRQ+ I D+N+IF+DL
Sbjct: 183 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 241
Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
MI +QG ++D I+ NVE S + E QL +A YQKK+RK
Sbjct: 242 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 285
>ref|XP_597848.2| PREDICTED: syntaxin 16-like isoform 1 [Bos taurus].
Length = 305
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 61 VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 120
Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
+ +R Q+ERL+ + A+L QA+Q S + +S R +R +
Sbjct: 121 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 178
Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
+ D E+ N + + ++++ + EQ+ L++ERE IRQ+ I D+N+IF+DL
Sbjct: 179 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 237
Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
MI +QG ++D I+ NVE S + E QL +A YQKK+RK
Sbjct: 238 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 281
>ref|XP_002701149.1| PREDICTED: syntaxin 16-like [Bos taurus].
Length = 322
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 78 VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 137
Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
+ +R Q+ERL+ + A+L QA+Q S + +S R +R +
Sbjct: 138 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 195
Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
+ D E+ N + + ++++ + EQ+ L++ERE IRQ+ I D+N+IF+DL
Sbjct: 196 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 254
Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
MI +QG ++D I+ NVE S + E QL +A YQKK+RK
Sbjct: 255 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 298
>ref|XP_002701148.1| PREDICTED: syntaxin 16-like [Bos taurus].
Length = 309
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 65 VDEIQYDVGRIKQKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 124
Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQR-RVSEKEKESIARARAGSRLSAEERQR 575
+ +R Q+ERL+ + A+L QA+Q S + +S R +R +
Sbjct: 125 ALPSRARRACSEQEERLLRNVVASLA--QALQELSTSFRHAQSSYLRRMKNREERSQHFF 182
Query: 576 EEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDL 746
+ D E+ N + + ++++ + EQ+ L++ERE IRQ+ I D+N+IF+DL
Sbjct: 183 ATSVPLMDDGED-NTLYDRGFTDEQLVLVEQNTLLVEEREREIRQIVQSISDLNEIFRDL 241
Query: 747 AMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
MI +QG ++D I+ NVE S + E QL +A YQKK+RK
Sbjct: 242 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 285
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,639,001
Number of extensions: 875252
Number of successful extensions: 4028
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3905
Number of HSP's successfully gapped: 21
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013466
(1038 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535342.1| PREDICTED: similar to syntaxin 12 [Canis famili... 441 e-124
Alignment gi|XP_541104.2| PREDICTED: similar to Syntaxin-7 isoform 1 [Can... 229 2e-60
Alignment gi|XP_859182.1| PREDICTED: similar to Syntaxin-7 isoform 5 [Can... 227 1e-59
Alignment gi|XP_859145.1| PREDICTED: similar to Syntaxin-7 isoform 4 [Can... 227 1e-59
Alignment gi|XP_859071.1| PREDICTED: similar to Syntaxin-7 isoform 3 [Can... 227 1e-59
Alignment gi|XP_849546.1| PREDICTED: similar to Syntaxin-7 isoform 2 [Can... 227 1e-59
Alignment gi|XP_539185.2| PREDICTED: similar to syntaxin 12 [Canis famili... 123 2e-28
Alignment gi|XP_867561.1| PREDICTED: similar to syntaxin 16 isoform b iso... 79 7e-15
Alignment gi|XP_867549.1| PREDICTED: similar to syntaxin 16 isoform a iso... 79 7e-15
Alignment gi|XP_867541.1| PREDICTED: similar to syntaxin 16 isoform b iso... 79 7e-15
>ref|XP_535342.1| PREDICTED: similar to syntaxin 12 [Canis familiaris].
Length = 274
Score = 441 bits (1135), Expect = e-124
Identities = 231/250 (92%), Positives = 233/250 (93%)
Frame = +3
Query: 132 MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 311
MSYGPLDMYRNPG+SGP LRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
Sbjct: 1 MSYGPLDMYRNPGSSGPQLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 60
Query: 312 ENLQQLQHSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAV 491
ENLQQLQHSTNQLAKETN SEQRQQKLQKERLMNDFSAALN+FQAV
Sbjct: 61 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSASEQRQQKLQKERLMNDFSAALNNFQAV 120
Query: 492 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 671
QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFD HEEWNQMQSQEDEVAITEQDLEL
Sbjct: 121 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDGHEEWNQMQSQEDEVAITEQDLEL 180
Query: 672 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 851
IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA
Sbjct: 181 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 240
Query: 852 AYYQKKSRKK 881
AYYQKKSRKK
Sbjct: 241 AYYQKKSRKK 250
>ref|XP_541104.2| PREDICTED: similar to Syntaxin-7 isoform 1 [Canis familiaris].
Length = 258
Score = 229 bits (585), Expect = 2e-60
Identities = 125/225 (55%), Positives = 166/225 (73%)
Frame = +3
Query: 204 IIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNXXXXXX 383
+ Q S NIQ+I+Q + +I+ ++QLGT QDS +L++ LQQ Q TNQLAKET+
Sbjct: 14 LAQRISSNIQKITQCSVEIQRSLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEF 73
Query: 384 XXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSAE 563
SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +EKEKE +AR RA SR+S
Sbjct: 74 GSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKEKEFVARVRASSRVSVS 131
Query: 564 ERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKD 743
Q E LVS++S + Q+Q QE+E ITE DL LI ERE++IRQLEADI+D+N+IFKD
Sbjct: 132 IEQGERNLVSWESQAQ-PQVQVQEEE--ITEDDLRLIHERESSIRQLEADIMDINEIFKD 188
Query: 744 LAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
L MMIH+QGD+IDSIEANVES++VHV++A QL RAA YQ+KSRK
Sbjct: 189 LGMMIHEQGDVIDSIEANVESADVHVQQANQQLSRAAEYQRKSRK 233
>ref|XP_859182.1| PREDICTED: similar to Syntaxin-7 isoform 5 [Canis familiaris].
Length = 261
Score = 227 bits (579), Expect = 1e-59
Identities = 125/228 (54%), Positives = 168/228 (73%), Gaps = 3/228 (1%)
Frame = +3
Query: 204 IIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNXXXXXX 383
+ Q S NIQ+I+Q + +I+ ++QLGT QDS +L++ LQQ Q TNQLAKET+
Sbjct: 14 LAQRISSNIQKITQCSVEIQRSLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEF 73
Query: 384 XXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSA- 560
SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +EKEKE +AR RA SR+S
Sbjct: 74 GSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKEKEFVARVRASSRVSGG 131
Query: 561 --EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
E+ +E LVS++S + Q+Q QE+E ITE DL LI ERE++IRQLEADI+D+N+I
Sbjct: 132 FPEDSSKERNLVSWESQAQ-PQVQVQEEE--ITEDDLRLIHERESSIRQLEADIMDINEI 188
Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
FKDL MMIH+QGD+IDSIEANVES++VHV++A QL RAA YQ+KSRK
Sbjct: 189 FKDLGMMIHEQGDVIDSIEANVESADVHVQQANQQLSRAAEYQRKSRK 236
>ref|XP_859145.1| PREDICTED: similar to Syntaxin-7 isoform 4 [Canis familiaris].
Length = 261
Score = 227 bits (579), Expect = 1e-59
Identities = 125/228 (54%), Positives = 168/228 (73%), Gaps = 3/228 (1%)
Frame = +3
Query: 204 IIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNXXXXXX 383
+ Q S NIQ+I+Q + +I+ ++QLGT QDS +L++ LQQ Q TNQLAKET+
Sbjct: 14 LAQRISSNIQKITQCSVEIQRSLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEF 73
Query: 384 XXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSA- 560
SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +EKEKE +AR RA SR+S
Sbjct: 74 GSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKEKEFVARVRASSRVSGG 131
Query: 561 --EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
E+ +E LVS++S + Q+Q QE+E ITE DL LI ERE++IRQLEADI+D+N+I
Sbjct: 132 FPEDSSKERNLVSWESQAQ-PQVQVQEEE--ITEDDLRLIHERESSIRQLEADIMDINEI 188
Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
FKDL MMIH+QGD+IDSIEANVES++VHV++A QL RAA YQ+KSRK
Sbjct: 189 FKDLGMMIHEQGDVIDSIEANVESADVHVQQANQQLSRAAEYQRKSRK 236
>ref|XP_859071.1| PREDICTED: similar to Syntaxin-7 isoform 3 [Canis familiaris].
Length = 261
Score = 227 bits (579), Expect = 1e-59
Identities = 125/228 (54%), Positives = 168/228 (73%), Gaps = 3/228 (1%)
Frame = +3
Query: 204 IIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNXXXXXX 383
+ Q S NIQ+I+Q + +I+ ++QLGT QDS +L++ LQQ Q TNQLAKET+
Sbjct: 14 LAQRISSNIQKITQCSVEIQRSLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEF 73
Query: 384 XXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSA- 560
SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +EKEKE +AR RA SR+S
Sbjct: 74 GSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKEKEFVARVRASSRVSGG 131
Query: 561 --EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
E+ +E LVS++S + Q+Q QE+E ITE DL LI ERE++IRQLEADI+D+N+I
Sbjct: 132 FPEDSSKERNLVSWESQAQ-PQVQVQEEE--ITEDDLRLIHERESSIRQLEADIMDINEI 188
Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
FKDL MMIH+QGD+IDSIEANVES++VHV++A QL RAA YQ+KSRK
Sbjct: 189 FKDLGMMIHEQGDVIDSIEANVESADVHVQQANQQLSRAAEYQRKSRK 236
>ref|XP_849546.1| PREDICTED: similar to Syntaxin-7 isoform 2 [Canis familiaris].
Length = 261
Score = 227 bits (579), Expect = 1e-59
Identities = 125/228 (54%), Positives = 168/228 (73%), Gaps = 3/228 (1%)
Frame = +3
Query: 204 IIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNXXXXXX 383
+ Q S NIQ+I+Q + +I+ ++QLGT QDS +L++ LQQ Q TNQLAKET+
Sbjct: 14 LAQRISSNIQKITQCSVEIQRSLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEF 73
Query: 384 XXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSA- 560
SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +EKEKE +AR RA SR+S
Sbjct: 74 GSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKEKEFVARVRASSRVSGG 131
Query: 561 --EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
E+ +E LVS++S + Q+Q QE+E ITE DL LI ERE++IRQLEADI+D+N+I
Sbjct: 132 FPEDSSKERNLVSWESQAQ-PQVQVQEEE--ITEDDLRLIHERESSIRQLEADIMDINEI 188
Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
FKDL MMIH+QGD+IDSIEANVES++VHV++A QL RAA YQ+KSRK
Sbjct: 189 FKDLGMMIHEQGDVIDSIEANVESADVHVQQANQQLSRAAEYQRKSRK 236
>ref|XP_539185.2| PREDICTED: similar to syntaxin 12 [Canis familiaris].
Length = 510
Score = 123 bits (309), Expect = 2e-28
Identities = 79/244 (32%), Positives = 131/244 (53%), Gaps = 6/244 (2%)
Frame = +3
Query: 165 PGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTN 344
P A+ D + Q S ++ +I+ + + ++ + LGT D+ +L+E+L Q TN
Sbjct: 243 PRATQADPSDLQELFQQTSASVFQINSSVSSLEQSLRSLGTPSDTQELRESLHAAQQETN 302
Query: 345 Q-LAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKE 521
+ +A T Q+ LQ +RL S A+ + VQ++++EK +
Sbjct: 303 KTVAASTGAVKQMTELLRGLCPEHALCQECLQLDRLKTQLSDAIQRYGVVQKKIAEKSRA 362
Query: 522 SIARARAGSRLSAE-----ERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERE 686
+ A+ G + + E +E++ F+ + Q Q Q ITE+DLE I+ RE
Sbjct: 363 LLPTAQRGGKQQSPRGPFAELPDDEKI--FNGGDGMWQGQEQALLPEITEEDLEAIRLRE 420
Query: 687 TAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQK 866
AI Q+E+D+LDVNQI KDLA M+ +QGD I+SIEA++E++ H E A++ L A+ +Q
Sbjct: 421 EAILQIESDLLDVNQIIKDLASMVSEQGDAIESIEASLEAASSHTEAASELLAGASRHQL 480
Query: 867 KSRK 878
+ RK
Sbjct: 481 QRRK 484
>ref|XP_867561.1| PREDICTED: similar to syntaxin 16 isoform b isoform 9 [Canis
familiaris].
Length = 309
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 11/228 (4%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 65 VDEIQYDVGRIKLKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 124
Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSAEERQRE 578
+ +R Q+ERL+ + A+L QA+Q + S RA++G + R+
Sbjct: 125 ALPSRARRACSEQEERLLRNVVASLA--QALQELST-----SFRRAQSGYLKRMKNREER 177
Query: 579 EQ--------LVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
Q L+ +D++ + EQ+ +++ERE IRQ+ I D+N+I
Sbjct: 178 SQHFFDTSVPLMDDGDDNTLYDRGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEI 237
Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
F+DL MI +QG ++D I+ NVE S + E QL +A YQKK+RK
Sbjct: 238 FRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 285
>ref|XP_867549.1| PREDICTED: similar to syntaxin 16 isoform a isoform 8 [Canis
familiaris].
Length = 322
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 11/228 (4%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 78 VDEIQYDVGRIKLKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 137
Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSAEERQRE 578
+ +R Q+ERL+ + A+L QA+Q + S RA++G + R+
Sbjct: 138 ALPSRARRACSEQEERLLRNVVASLA--QALQELST-----SFRRAQSGYLKRMKNREER 190
Query: 579 EQ--------LVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
Q L+ +D++ + EQ+ +++ERE IRQ+ I D+N+I
Sbjct: 191 SQHFFDTSVPLMDDGDDNTLYDRGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEI 250
Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
F+DL MI +QG ++D I+ NVE S + E QL +A YQKK+RK
Sbjct: 251 FRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 298
>ref|XP_867541.1| PREDICTED: similar to syntaxin 16 isoform b isoform 7 [Canis
familiaris].
Length = 305
Score = 79.0 bits (193), Expect = 7e-15
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 11/228 (4%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 61 VDEIQYDVGRIKLKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 120
Query: 399 XXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGSRLSAEERQRE 578
+ +R Q+ERL+ + A+L QA+Q + S RA++G + R+
Sbjct: 121 ALPSRARRACSEQEERLLRNVVASLA--QALQELST-----SFRRAQSGYLKRMKNREER 173
Query: 579 EQ--------LVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQI 734
Q L+ +D++ + EQ+ +++ERE IRQ+ I D+N+I
Sbjct: 174 SQHFFDTSVPLMDDGDDNTLYDRGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEI 233
Query: 735 FKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
F+DL MI +QG ++D I+ NVE S + E QL +A YQKK+RK
Sbjct: 234 FRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRK 281
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,243,936
Number of extensions: 908968
Number of successful extensions: 4775
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4445
Number of HSP's successfully gapped: 20
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013466
(1038 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230371.1| syntaxin 12 [Sus scrofa]. 450 e-127
Alignment gi|XP_001926511.1| PREDICTED: syntaxin-7 [Sus scrofa]. 232 2e-61
Alignment gi|XP_003124549.2| PREDICTED: syntaxin-1B-like [Sus scrofa]. 79 5e-15
Alignment gi|XP_003124525.1| PREDICTED: syntaxin-4-like [Sus scrofa]. 77 1e-14
Alignment gi|XP_003122766.2| PREDICTED: syntaxin-3-like [Sus scrofa]. 77 2e-14
Alignment gi|XP_003124470.2| PREDICTED: syntaxin-1A-like [Sus scrofa]. 75 5e-14
Alignment gi|XP_001924932.2| PREDICTED: syntaxin-2-like [Sus scrofa]. 72 4e-13
Alignment gi|NP_001116671.1| syntaxin-16 [Sus scrofa]. 72 7e-13
Alignment gi|XP_001926274.1| PREDICTED: syntaxin-11-like [Sus scrofa]. 55 5e-08
Alignment gi|XP_001927804.1| PREDICTED: syntaxin-17-like [Sus scrofa]. 53 2e-07
>ref|NP_001230371.1| syntaxin 12 [Sus scrofa].
Length = 276
Score = 450 bits (1158), Expect = e-127
Identities = 236/250 (94%), Positives = 236/250 (94%)
Frame = +3
Query: 132 MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 311
MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
Sbjct: 1 MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 60
Query: 312 ENLQQLQHSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAV 491
ENLQQLQHSTNQLAKETN TSEQRQQKLQKERLMNDFSAALNSFQAV
Sbjct: 61 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQKLQKERLMNDFSAALNSFQAV 120
Query: 492 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 671
QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL
Sbjct: 121 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 180
Query: 672 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 851
IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA
Sbjct: 181 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 240
Query: 852 AYYQKKSRKK 881
AYYQKKSRKK
Sbjct: 241 AYYQKKSRKK 250
>ref|XP_001926511.1| PREDICTED: syntaxin-7 [Sus scrofa].
Length = 261
Score = 232 bits (592), Expect = 2e-61
Identities = 131/245 (53%), Positives = 174/245 (71%), Gaps = 3/245 (1%)
Frame = +3
Query: 153 MYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQ 332
M PG G P + + Q S NIQ+I+Q + +I+ ++QLGT QD+ +L++ LQQ Q
Sbjct: 1 MSYTPGIGGDPAQ----LAQCISSNIQKITQCSVEIQRTLNQLGTPQDTPELRQQLQQKQ 56
Query: 333 HSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEK 512
TNQLAKET+ SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +EK
Sbjct: 57 QYTNQLAKETDKYIKEFGSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEK 114
Query: 513 EKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKER 683
EKE +AR RA SR+S EE +E LVS++S + Q+Q Q++E ITE DL LI ER
Sbjct: 115 EKEFVARVRASSRVSGGFPEETSKERNLVSWESQTQ-PQVQVQDEE--ITEDDLRLIHER 171
Query: 684 ETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQ 863
E++IRQLEADI+D+N+IFKDL MMIH+QGD+IDSIEANVESSEVHV++A QL RAA YQ
Sbjct: 172 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESSEVHVQQANQQLSRAADYQ 231
Query: 864 KKSRK 878
+KSRK
Sbjct: 232 RKSRK 236
>ref|XP_003124549.2| PREDICTED: syntaxin-1B-like [Sus scrofa].
Length = 288
Score = 78.6 bits (192), Expect = 5e-15
Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 8/238 (3%)
Frame = +3
Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
+F ++ G I+++S+ Q+K S L K ++ L+ L + A +
Sbjct: 31 EFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKTKQELEDLTADIKKTANKVRS 90
Query: 369 XXXXXXXXXXXXX-----TSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR 533
+++ R +K Q L F + + A Q + ++ K+ I R
Sbjct: 91 KLKAIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQR 150
Query: 534 ARAGSRLSAEERQREEQLVS--FDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLE 707
+ + + E+ L S + +M SQ +T+Q L I+ R I +LE
Sbjct: 151 QLEITGRTTTNEELEDMLESGKLAIFTDDIKMDSQ-----MTKQALNEIETRHNEIIKLE 205
Query: 708 ADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
I +++ +F D+AM++ QG++ID IE NVE S +VERA ++A YQ K+R+K
Sbjct: 206 TSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRK 263
>ref|XP_003124525.1| PREDICTED: syntaxin-4-like [Sus scrofa].
Length = 297
Score = 77.4 bits (189), Expect = 1e-14
Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 7/247 (2%)
Frame = +3
Query: 162 NPGAS--GPPLRDFNSIIQTCSGNIQRISQATAQI-KNLMSQLGTKQDSSKLQENLQQLQ 332
+PG + G P +F ++T I ++ ++ K ++ L T ++++LQ L+
Sbjct: 28 HPGTARLGSPDDEFFQKVRTIRQTIVKLENKVRELEKQQVTILATPLPEESMKQDLQNLR 87
Query: 333 HSTNQLAK----ETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRR 500
QL + E + R +K Q L F +N ++Q
Sbjct: 88 DEIKQLGRDIRAELKAIEPQKEEADENYNSVNTRMRKTQHGVLSQQFVELINKCNSMQSE 147
Query: 501 VSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKE 680
EK E I R + + EQ++ DS + + + + +T Q L I
Sbjct: 148 YREKNVERIRRQLKITNAGMVSDEELEQML--DSGQSEVFVSNILKDTQVTRQALNEISA 205
Query: 681 RETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYY 860
R + I+QLE I ++++IF LA + QG++I+ IE N+ SS +VER + ++ A
Sbjct: 206 RHSEIQQLERSIRELHEIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKMALEN 265
Query: 861 QKKSRKK 881
QKK+RKK
Sbjct: 266 QKKARKK 272
>ref|XP_003122766.2| PREDICTED: syntaxin-3-like [Sus scrofa].
Length = 289
Score = 76.6 bits (187), Expect = 2e-14
Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 7/237 (2%)
Frame = +3
Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
+F S I+ NI +IS+ + K L S L K +++L+QL T ++ K N
Sbjct: 34 EFFSEIEETRLNIDKISEHVEEAKKLYSIILSAPIPEPKTKDDLEQL---TTEIKKRANN 90
Query: 369 XXXXXXXXXXXXXTSEQRQ------QKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIA 530
E R +K Q L F + + Q E+ K I
Sbjct: 91 VRNKLKSMERHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDFRERSKGRIQ 150
Query: 531 RARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEA 710
R + + + EE L S + + + + I++Q L I+ R I +LE+
Sbjct: 151 RQLEITGKKTTDEELEEMLESGNPAIFTSGIIDSQ----ISKQALSEIEGRHKDIVRLES 206
Query: 711 DILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
I +++ +F D+AM++ +QG+++D+IE NV + HVE+A ++ +RA YQ ++RKK
Sbjct: 207 SIKELHDMFMDIAMLVENQGEMLDNIELNVMHTVDHVEKAREETKRAVKYQGQARKK 263
>ref|XP_003124470.2| PREDICTED: syntaxin-1A-like [Sus scrofa].
Length = 288
Score = 75.5 bits (184), Expect = 5e-14
Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 6/236 (2%)
Frame = +3
Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKET-- 362
+F ++ G I +I++ ++K S L + K +E L++L + A +
Sbjct: 32 EFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 91
Query: 363 ---NXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR 533
+ +++ R +K Q L F ++ + A Q E+ K I R
Sbjct: 92 KLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR 151
Query: 534 ARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEAD 713
+ + + E+ L S + + + +I++Q L I+ R + I +LE
Sbjct: 152 QLEITGRTTTSEELEDMLESGNPAIFASGIIMDS---SISKQALSEIETRHSEIIKLENS 208
Query: 714 ILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
I +++ +F D+AM++ QG++ID IE NVE S +VERA ++A YQ K+R+K
Sbjct: 209 IRELHDMFMDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRK 264
>ref|XP_001924932.2| PREDICTED: syntaxin-2-like [Sus scrofa].
Length = 288
Score = 72.4 bits (176), Expect = 4e-13
Identities = 58/236 (24%), Positives = 108/236 (45%), Gaps = 6/236 (2%)
Frame = +3
Query: 192 DFNSIIQTCSGNIQRISQATAQIK-NLMSQLGTKQDSSKLQENLQQL----QHSTNQLAK 356
DF ++ +I +I+Q ++K N L K++E L+ L + + N++
Sbjct: 31 DFFHQVEEIRNSIAKIAQYVEEVKKNHSIILSAPNPEGKIKEELEDLNKEIKKTANKIRT 90
Query: 357 ETNXXXXXXXXXXXXXXTS-EQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR 533
+ TS + R ++ Q L F + + Q E+ K I R
Sbjct: 91 KLKSIEQSFDQDESGNRTSVDLRIRRTQHSVLSRKFVEVMTEYNEAQTLFRERSKGRIQR 150
Query: 534 ARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEAD 713
+ + + + EE L S + + + S IT Q L I+ R I +LE
Sbjct: 151 QLEITGKTTTDDELEEMLESGNPSIFTSDIISDSQ---ITRQALNEIESRHKDIMKLETS 207
Query: 714 ILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
I +++++F D+AM + QG++I++IE NV ++ +VE A ++ ++A Y K+R+K
Sbjct: 208 IRELHEMFMDMAMFVETQGEMINNIEKNVMNAADYVEHAKEETKKAIKYHSKARRK 263
>ref|NP_001116671.1| syntaxin-16 [Sus scrofa].
Length = 305
Score = 71.6 bits (174), Expect = 7e-13
Identities = 34/82 (41%), Positives = 55/82 (67%)
Frame = +3
Query: 633 EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 812
+D++ + EQ+ +++ERE IRQ+ I D+N+IF+DL MI +QG ++D I+ +VE +
Sbjct: 200 DDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYSVEQAC 259
Query: 813 VHVERATDQLQRAAYYQKKSRK 878
+ E QL +A YQKK+RK
Sbjct: 260 MKTEDGLKQLHKAEQYQKKNRK 281
>ref|XP_001926274.1| PREDICTED: syntaxin-11-like [Sus scrofa].
Length = 287
Score = 55.5 bits (132), Expect = 5e-08
Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 25/248 (10%)
Frame = +3
Query: 204 IIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKL--QENLQQLQHSTNQLAKETNXXXX 377
I+++ +IQ + Q+ + +LG KQ++ L L ++ TN +AK+
Sbjct: 40 ILESLYRDIQELQDENQQLFTDVKRLG-KQNARFLTSMRRLSSIKRDTNSIAKDIKAR-- 96
Query: 378 XXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR---ARAGS 548
E +KL + +++ + A + + R+++ + ++AR A
Sbjct: 97 -----------GESIHRKLSAMKALSEEAQAKHGEHSAVARIAQAQYSALARTFQAAMHE 145
Query: 549 RLSAEERQREE-------QLVSFDSHEEWNQMQSQEDE-------------VAITEQDLE 668
AE +QRE QL NQ++ ++ V L
Sbjct: 146 YNQAEMKQRENCKIRIQRQLEIMGKDVSSNQIEDMFEQGKWDVFSENLLADVKGARAALN 205
Query: 669 LIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQR 848
I+ R + +LE+ I D++ +F +AM++ Q D +D IE NV+ + + +A Q+++
Sbjct: 206 EIENRHREMLRLESRIRDLHDLFLQMAMLVEQQADTLDVIEFNVQKTLDYTGQAKVQVRK 265
Query: 849 AAYYQKKS 872
A Y+KK+
Sbjct: 266 AVQYKKKN 273
>ref|XP_001927804.1| PREDICTED: syntaxin-17-like [Sus scrofa].
Length = 302
Score = 53.1 bits (126), Expect = 2e-07
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Frame = +3
Query: 591 SFDSHEEWNQMQSQEDEVAITE--QDLELIKERETAIRQLEADILDVNQIFKDLAMMIHD 764
+F + E+ + QS A+ E QD + ET LEAD+++++Q+ D +++++
Sbjct: 140 AFHTTEDETEPQSMTQIYALPEIPQDQNAAESWET----LEADLIELSQLVTDFSLLVNS 195
Query: 765 QGDLIDSIEANVESSEVHVERATDQLQRAAYYQ 863
Q + IDSIE +V S+ V+VE T L +AA Y+
Sbjct: 196 QQEKIDSIEDHVNSAAVNVEEGTKNLGKAAKYK 228
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,311,423
Number of extensions: 562762
Number of successful extensions: 2603
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2530
Number of HSP's successfully gapped: 10
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013466
(1038 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598648.1| syntaxin-12 [Mus musculus]. 431 e-121
Alignment gi|NP_058077.2| syntaxin-7 [Mus musculus]. 228 8e-60
Alignment gi|NP_001095895.1| syntaxin-16 isoform d [Mus musculus]. 79 8e-15
Alignment gi|NP_001095894.1| syntaxin-16 isoform c [Mus musculus]. 79 8e-15
Alignment gi|NP_077725.1| syntaxin-1B [Mus musculus]. 79 8e-15
Alignment gi|NP_001095893.1| syntaxin-16 isoform b [Mus musculus]. 79 8e-15
Alignment gi|NP_766263.2| syntaxin-16 isoform a [Mus musculus]. 79 8e-15
Alignment gi|NP_689344.1| syntaxin-3 isoform A [Mus musculus]. 78 1e-14
Alignment gi|NP_033320.1| syntaxin-4 [Mus musculus]. 77 2e-14
Alignment gi|NP_058081.2| syntaxin-1A [Mus musculus]. 75 8e-14
>ref|NP_598648.1| syntaxin-12 [Mus musculus].
Length = 274
Score = 431 bits (1109), Expect = e-121
Identities = 225/250 (90%), Positives = 230/250 (92%)
Frame = +3
Query: 132 MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 311
MSYGPLDMYRNPG SGP RDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
Sbjct: 1 MSYGPLDMYRNPGPSGPQPRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 60
Query: 312 ENLQQLQHSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAV 491
ENLQQLQHSTNQLAKETN SEQRQQKLQKERLMNDFS+ALN+FQ V
Sbjct: 61 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSASEQRQQKLQKERLMNDFSSALNNFQVV 120
Query: 492 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 671
QR+VSEKEKESIARARAGSRLSAE+RQREEQLVSFDSHEEWNQMQSQE+E AITEQDLEL
Sbjct: 121 QRKVSEKEKESIARARAGSRLSAEDRQREEQLVSFDSHEEWNQMQSQEEEAAITEQDLEL 180
Query: 672 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 851
IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA
Sbjct: 181 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 240
Query: 852 AYYQKKSRKK 881
AYYQKKSRKK
Sbjct: 241 AYYQKKSRKK 250
>ref|NP_058077.2| syntaxin-7 [Mus musculus].
Length = 261
Score = 228 bits (580), Expect = 8e-60
Identities = 128/245 (52%), Positives = 173/245 (70%), Gaps = 3/245 (1%)
Frame = +3
Query: 153 MYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQ 332
M PG G D + Q S NIQ+I+Q + +I+ ++QLGT QDS +L++ LQQ Q
Sbjct: 1 MSYTPGIGG----DSAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQ 56
Query: 333 HSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEK 512
TNQLAKET+ SEQRQ+K+QK+RL+ +F+ +L +FQ QR+ +E+
Sbjct: 57 QYTNQLAKETDKYIKEFGSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKAQRQAAER 114
Query: 513 EKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKER 683
EKE +AR RA SR+S E+ +E+ LVS++S + Q+Q Q++E ITE DL LI ER
Sbjct: 115 EKEFVARVRASSRVSGGFPEDSSKEKNLVSWESQTQ-PQVQVQDEE--ITEDDLRLIHER 171
Query: 684 ETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQ 863
E++IRQLEADI+D+N+IFKDL MMIH+QGD+IDSIEANVES+EVHV++A QL RAA YQ
Sbjct: 172 ESSIRQLEADIMDINEIFKDLGMMIHEQGDMIDSIEANVESAEVHVQQANQQLSRAADYQ 231
Query: 864 KKSRK 878
+KSRK
Sbjct: 232 RKSRK 236
>ref|NP_001095895.1| syntaxin-16 isoform d [Mus musculus].
Length = 305
Score = 78.6 bits (192), Expect = 8e-15
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 4/221 (1%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 61 VDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEVTQLFHRCQRAVQ 120
Query: 399 XXXTSEQRQQKLQKERLMNDFSAAL-NSFQAVQRRVSEKEKESIARARAGSRLSAEERQR 575
+ +R Q+ERL+ + A+L + Q + + + + R + S
Sbjct: 121 ALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMKNREERSQHFFDT 180
Query: 576 EEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMM 755
L+ +D++ + EQ+ +++ERE IRQ+ I D+N+IF+DL M
Sbjct: 181 PVPLMDDGDDATLYGQGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAM 240
Query: 756 IHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
I +QG ++D I+ NVE S V E QL +A YQKK+RK
Sbjct: 241 IVEQGTVLDRIDYNVEQSCVKTEDGLKQLHKAEQYQKKNRK 281
>ref|NP_001095894.1| syntaxin-16 isoform c [Mus musculus].
Length = 309
Score = 78.6 bits (192), Expect = 8e-15
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 4/221 (1%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 65 VDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEVTQLFHRCQRAVQ 124
Query: 399 XXXTSEQRQQKLQKERLMNDFSAAL-NSFQAVQRRVSEKEKESIARARAGSRLSAEERQR 575
+ +R Q+ERL+ + A+L + Q + + + + R + S
Sbjct: 125 ALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMKNREERSQHFFDT 184
Query: 576 EEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMM 755
L+ +D++ + EQ+ +++ERE IRQ+ I D+N+IF+DL M
Sbjct: 185 PVPLMDDGDDATLYGQGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAM 244
Query: 756 IHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
I +QG ++D I+ NVE S V E QL +A YQKK+RK
Sbjct: 245 IVEQGTVLDRIDYNVEQSCVKTEDGLKQLHKAEQYQKKNRK 285
>ref|NP_077725.1| syntaxin-1B [Mus musculus].
Length = 288
Score = 78.6 bits (192), Expect = 8e-15
Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 8/238 (3%)
Frame = +3
Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
+F ++ G I+++S+ Q+K S L K ++ L+ L + A +
Sbjct: 31 EFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKTKQELEDLTADIKKTANKVRS 90
Query: 369 XXXXXXXXXXXXX-----TSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR 533
+++ R +K Q L F + + A Q + ++ K+ I R
Sbjct: 91 KLKAIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQR 150
Query: 534 ARAGSRLSAEERQREEQLVS--FDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLE 707
+ + + E+ L S + +M SQ +T+Q L I+ R I +LE
Sbjct: 151 QLEITGRTTTNEELEDMLESGKLAIFTDDIKMDSQ-----MTKQALNEIETRHNEIIKLE 205
Query: 708 ADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
I +++ +F D+AM++ QG++ID IE NVE S +VERA ++A YQ K+R+K
Sbjct: 206 TSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRK 263
>ref|NP_001095893.1| syntaxin-16 isoform b [Mus musculus].
Length = 322
Score = 78.6 bits (192), Expect = 8e-15
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 4/221 (1%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 78 VDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEVTQLFHRCQRAVQ 137
Query: 399 XXXTSEQRQQKLQKERLMNDFSAAL-NSFQAVQRRVSEKEKESIARARAGSRLSAEERQR 575
+ +R Q+ERL+ + A+L + Q + + + + R + S
Sbjct: 138 ALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMKNREERSQHFFDT 197
Query: 576 EEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMM 755
L+ +D++ + EQ+ +++ERE IRQ+ I D+N+IF+DL M
Sbjct: 198 PVPLMDDGDDATLYGQGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAM 257
Query: 756 IHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
I +QG ++D I+ NVE S V E QL +A YQKK+RK
Sbjct: 258 IVEQGTVLDRIDYNVEQSCVKTEDGLKQLHKAEQYQKKNRK 298
>ref|NP_766263.2| syntaxin-16 isoform a [Mus musculus].
Length = 326
Score = 78.6 bits (192), Expect = 8e-15
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 4/221 (1%)
Frame = +3
Query: 228 IQRISQATAQIKNLMSQLGTKQDSSKLQENLQ---QLQHSTNQLAKETNXXXXXXXXXXX 398
+ I +IK M +L + D + L + +H+ +E
Sbjct: 82 VDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEVTQLFHRCQRAVQ 141
Query: 399 XXXTSEQRQQKLQKERLMNDFSAAL-NSFQAVQRRVSEKEKESIARARAGSRLSAEERQR 575
+ +R Q+ERL+ + A+L + Q + + + + R + S
Sbjct: 142 ALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMKNREERSQHFFDT 201
Query: 576 EEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMM 755
L+ +D++ + EQ+ +++ERE IRQ+ I D+N+IF+DL M
Sbjct: 202 PVPLMDDGDDATLYGQGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAM 261
Query: 756 IHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
I +QG ++D I+ NVE S V E QL +A YQKK+RK
Sbjct: 262 IVEQGTVLDRIDYNVEQSCVKTEDGLKQLHKAEQYQKKNRK 302
>ref|NP_689344.1| syntaxin-3 isoform A [Mus musculus].
Length = 289
Score = 77.8 bits (190), Expect = 1e-14
Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 7/237 (2%)
Frame = +3
Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
+F S I+ NI +IS+ + K L S L K +++L+QL T ++ K N
Sbjct: 34 EFFSEIEETRLNIDKISEHVEEAKKLYSIILSAPIPEPKTKDDLEQL---TTEIKKRANN 90
Query: 369 XXXXXXXXXXXXXTSEQRQ------QKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIA 530
E R +K Q L F + + Q E+ K I
Sbjct: 91 VRNKLKSMEKHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDFRERSKGRIQ 150
Query: 531 RARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEA 710
R + + + EE L S + + + + I++Q L I+ R I +LE+
Sbjct: 151 RQLEITGKKTTDEELEEMLESGNPAIFTSGIIDSQ----ISKQALSEIEGRHKDIVRLES 206
Query: 711 DILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
I +++ +F D+AM++ +QG+++D+IE NV + HVE+A D+ +RA YQ ++RKK
Sbjct: 207 SIKELHDMFMDIAMLVENQGEMLDNIELNVMHTVDHVEKARDETKRAMKYQGQARKK 263
>ref|NP_033320.1| syntaxin-4 [Mus musculus].
Length = 298
Score = 77.4 bits (189), Expect = 2e-14
Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 5/240 (2%)
Frame = +3
Query: 177 GPPLRDFNSIIQTCSGNIQRISQATAQI-KNLMSQLGTKQDSSKLQENLQQLQHSTNQLA 353
G P +F +QT + ++ ++ K ++ L T +++ LQ L+ QL
Sbjct: 35 GSPDDEFFQKVQTIRQTMAKLESKVRELEKQQVTILATPLPEESMKQGLQNLREEIKQLG 94
Query: 354 KETNXXXXXXXXXXXXXXTS----EQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKE 521
+E + R +K Q L F +N ++Q EK E
Sbjct: 95 REVRAQLKAIEPQKEEADENYNSVNTRMKKTQHGVLSQQFVELINKCNSMQSEYREKNVE 154
Query: 522 SIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQ 701
I R + + EQ++ DS + + + + +T Q L I R + I+Q
Sbjct: 155 RIRRQLKITNAGMVSDEELEQML--DSGQSEVFVSNILKDTQVTRQALNEISARHSEIQQ 212
Query: 702 LEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
LE I ++++IF LA + QG++I+ IE N+ SS +VER + ++ A QKK+RKK
Sbjct: 213 LERSIRELHEIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKIALENQKKARKK 272
>ref|NP_058081.2| syntaxin-1A [Mus musculus].
Length = 288
Score = 75.1 bits (183), Expect = 8e-14
Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 6/236 (2%)
Frame = +3
Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKET-- 362
+F ++ G I +I++ ++K S L + K +E L++L + A +
Sbjct: 32 EFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 91
Query: 363 ---NXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR 533
+ +++ R +K Q L F ++ + A Q E+ K I R
Sbjct: 92 KLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR 151
Query: 534 ARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEAD 713
+ + + E+ L S + + + +I++Q L I+ R + I +LE
Sbjct: 152 QLEITGRTTTSEELEDMLESGNPAIFASGIIMDS---SISKQALSEIETRHSEIIKLETS 208
Query: 714 ILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
I +++ +F D+AM++ QG++ID IE NVE + +VERA ++A YQ K+R+K
Sbjct: 209 IRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 264
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,258,248
Number of extensions: 750102
Number of successful extensions: 3715
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3420
Number of HSP's successfully gapped: 14
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013466
(1038 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_803173.1| syntaxin-12 [Homo sapiens]. 439 e-123
Alignment gi|NP_003560.2| syntaxin-7 [Homo sapiens]. 229 3e-60
Alignment gi|NP_659440.2| t-SNARE domain-containing protein 1 [Homo sapie... 122 7e-28
Alignment gi|NP_443106.1| syntaxin-1B [Homo sapiens]. 79 9e-15
Alignment gi|NP_001171511.1| syntaxin-3 isoform 2 [Homo sapiens]. 78 2e-14
Alignment gi|NP_004168.1| syntaxin-3 isoform 1 [Homo sapiens]. 78 2e-14
Alignment gi|NP_004595.2| syntaxin-4 [Homo sapiens]. 77 3e-14
Alignment gi|NP_001191797.1| syntaxin-16 isoform e [Homo sapiens]. 77 3e-14
Alignment gi|NP_001128245.1| syntaxin-16 isoform d [Homo sapiens]. 77 3e-14
Alignment gi|NP_001128244.1| syntaxin-16 isoform c [Homo sapiens]. 77 3e-14
>ref|NP_803173.1| syntaxin-12 [Homo sapiens].
Length = 276
Score = 439 bits (1130), Expect = e-123
Identities = 230/250 (92%), Positives = 234/250 (93%)
Frame = +3
Query: 132 MSYGPLDMYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 311
MSYGPLDMYRNPG SGP LRDF+SIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
Sbjct: 1 MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ 60
Query: 312 ENLQQLQHSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAV 491
ENLQQLQHSTNQLAKETN TSEQRQQ+LQKERLMNDFSAALN+FQAV
Sbjct: 61 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAV 120
Query: 492 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 671
QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL
Sbjct: 121 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL 180
Query: 672 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRA 851
IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERAT+QLQRA
Sbjct: 181 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRA 240
Query: 852 AYYQKKSRKK 881
AYYQKKSRKK
Sbjct: 241 AYYQKKSRKK 250
>ref|NP_003560.2| syntaxin-7 [Homo sapiens].
Length = 261
Score = 229 bits (584), Expect = 3e-60
Identities = 128/245 (52%), Positives = 174/245 (71%), Gaps = 3/245 (1%)
Frame = +3
Query: 153 MYRNPGASGPPLRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQ 332
M PG G P + + Q S NIQ+I+Q + +I+ ++QLGT QDS +L++ LQQ Q
Sbjct: 1 MSYTPGVGGDPAQ----LAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQ 56
Query: 333 HSTNQLAKETNXXXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEK 512
TNQLAKET+ SEQRQ+K+QK+RL+ +F+ +L +FQ VQR+ +E+
Sbjct: 57 QYTNQLAKETDKYIKEFGSLPTTP--SEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAER 114
Query: 513 EKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKER 683
EKE +AR RA SR+S E+ +E LVS++S + Q+Q Q++E ITE DL LI ER
Sbjct: 115 EKEFVARVRASSRVSGSFPEDSSKERNLVSWESQTQ-PQVQVQDEE--ITEDDLRLIHER 171
Query: 684 ETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQ 863
E++IRQLEADI+D+N+IFKDL MMIH+QGD+IDSIEANVE++EVHV++A QL RAA YQ
Sbjct: 172 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQ 231
Query: 864 KKSRK 878
+KSRK
Sbjct: 232 RKSRK 236
>ref|NP_659440.2| t-SNARE domain-containing protein 1 [Homo sapiens].
Length = 513
Score = 122 bits (305), Expect = 7e-28
Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 4/233 (1%)
Frame = +3
Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQ-LAKETNX 368
+ + Q S N+ RI+ + ++ + LGT D+ +L+++L Q TN+ +A +
Sbjct: 256 NLQELFQEMSANVFRINSSVTSLERSLQSLGTPSDTQELRDSLHTAQQETNKTIAASASS 315
Query: 369 XXXXXXXXXXXXXTSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIARARAGS 548
+Q++ Q +RL S A+ + VQ++++EK + + A+ GS
Sbjct: 316 VKQMAELLRSSCPQERLQQERPQLDRLKTQLSDAIQCYGVVQKKIAEKSRALLPMAQRGS 375
Query: 549 RLSAEERQRE---EQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADIL 719
+ S + E ++ V S W Q Q Q ITE+DLE I+ RE AI Q+E+++L
Sbjct: 376 KQSPQAPFAELADDEKVFNGSDNMW-QGQEQALLPDITEEDLEAIRLREEAILQMESNLL 434
Query: 720 DVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRK 878
DVNQI KDLA M+ +QG+ +DSIEA++E++ H E A L A+ +Q + K
Sbjct: 435 DVNQIIKDLASMVSEQGEAVDSIEASLEAASSHAEAARQLLAGASRHQLQRHK 487
>ref|NP_443106.1| syntaxin-1B [Homo sapiens].
Length = 288
Score = 78.6 bits (192), Expect = 9e-15
Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 8/238 (3%)
Frame = +3
Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
+F ++ G I+++S+ Q+K S L K ++ L+ L + A +
Sbjct: 31 EFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKTKQELEDLTADIKKTANKVRS 90
Query: 369 XXXXXXXXXXXXX-----TSEQRQQKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIAR 533
+++ R +K Q L F + + A Q + ++ K+ I R
Sbjct: 91 KLKAIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQR 150
Query: 534 ARAGSRLSAEERQREEQLVS--FDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLE 707
+ + + E+ L S + +M SQ +T+Q L I+ R I +LE
Sbjct: 151 QLEITGRTTTNEELEDMLESGKLAIFTDDIKMDSQ-----MTKQALNEIETRHNEIIKLE 205
Query: 708 ADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
I +++ +F D+AM++ QG++ID IE NVE S +VERA ++A YQ K+R+K
Sbjct: 206 TSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRK 263
>ref|NP_001171511.1| syntaxin-3 isoform 2 [Homo sapiens].
Length = 277
Score = 77.8 bits (190), Expect = 2e-14
Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 7/237 (2%)
Frame = +3
Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
+F S I+ NI +IS+ + K L S L K +++L+QL T ++ K N
Sbjct: 34 EFFSEIEETRLNIDKISEHVEEAKKLYSIILSAPIPEPKTKDDLEQL---TTEIKKRANN 90
Query: 369 XXXXXXXXXXXXXTSEQRQ------QKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIA 530
E R +K Q L F + + Q E+ K I
Sbjct: 91 VRNKLKSMEKHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDFRERSKGRIQ 150
Query: 531 RARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEA 710
R + + + EE L S + + + + I++Q L I+ R I +LE+
Sbjct: 151 RQLEITGKKTTDEELEEMLESGNPAIFTSGIIDSQ----ISKQALSEIEGRHKDIVRLES 206
Query: 711 DILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
I +++ +F D+AM++ +QG+++D+IE NV + HVE+A D+ ++A YQ ++RKK
Sbjct: 207 SIKELHDMFMDIAMLVENQGEMLDNIELNVMHTVDHVEKARDETKKAVKYQSQARKK 263
>ref|NP_004168.1| syntaxin-3 isoform 1 [Homo sapiens].
Length = 289
Score = 77.8 bits (190), Expect = 2e-14
Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 7/237 (2%)
Frame = +3
Query: 192 DFNSIIQTCSGNIQRISQATAQIKNLMSQ-LGTKQDSSKLQENLQQLQHSTNQLAKETNX 368
+F S I+ NI +IS+ + K L S L K +++L+QL T ++ K N
Sbjct: 34 EFFSEIEETRLNIDKISEHVEEAKKLYSIILSAPIPEPKTKDDLEQL---TTEIKKRANN 90
Query: 369 XXXXXXXXXXXXXTSEQRQ------QKLQKERLMNDFSAALNSFQAVQRRVSEKEKESIA 530
E R +K Q L F + + Q E+ K I
Sbjct: 91 VRNKLKSMEKHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDFRERSKGRIQ 150
Query: 531 RARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEA 710
R + + + EE L S + + + + I++Q L I+ R I +LE+
Sbjct: 151 RQLEITGKKTTDEELEEMLESGNPAIFTSGIIDSQ----ISKQALSEIEGRHKDIVRLES 206
Query: 711 DILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKK 881
I +++ +F D+AM++ +QG+++D+IE NV + HVE+A D+ ++A YQ ++RKK
Sbjct: 207 SIKELHDMFMDIAMLVENQGEMLDNIELNVMHTVDHVEKARDETKKAVKYQSQARKK 263
>ref|NP_004595.2| syntaxin-4 [Homo sapiens].
Length = 297
Score = 77.0 bits (188), Expect = 3e-14
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 7/247 (2%)
Frame = +3
Query: 162 NPGAS--GPPLRDFNSIIQTCSGNIQRISQATAQI-KNLMSQLGTKQDSSKLQENLQQLQ 332
+PG + G P +F ++T I ++ ++ K ++ L T +++ LQ L+
Sbjct: 28 HPGTARLGSPDEEFFHKVRTIRQTIVKLGNKVQELEKQQVTILATPLPEESMKQELQNLR 87
Query: 333 HSTNQLAKETNXXXXXXXXXXXXXXTS----EQRQQKLQKERLMNDFSAALNSFQAVQRR 500
QL +E + R +K Q L F +N ++Q
Sbjct: 88 DEIKQLGREIRLQLKAIEPQKEEADENYNSVNTRMRKTQHGVLSQQFVELINKCNSMQSE 147
Query: 501 VSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKE 680
EK E I R + + EQ++ DS + + + + +T Q L I
Sbjct: 148 YREKNVERIRRQLKITNAGMVSDEELEQML--DSGQSEVFVSNILKDTQVTRQALNEISA 205
Query: 681 RETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYY 860
R + I+QLE I +++ IF LA + QG++I+ IE N+ SS +VER + ++ A
Sbjct: 206 RHSEIQQLERSIRELHDIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKTALEN 265
Query: 861 QKKSRKK 881
QKK+RKK
Sbjct: 266 QKKARKK 272
>ref|NP_001191797.1| syntaxin-16 isoform e [Homo sapiens].
Length = 272
Score = 76.6 bits (187), Expect = 3e-14
Identities = 37/82 (45%), Positives = 55/82 (67%)
Frame = +3
Query: 633 EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 812
ED++ + EQ+ +++ERE IRQ+ I D+N+IF+DL MI +QG ++D I+ NVE S
Sbjct: 167 EDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSC 226
Query: 813 VHVERATDQLQRAAYYQKKSRK 878
+ E QL +A YQKK+RK
Sbjct: 227 IKTEDGLKQLHKAEQYQKKNRK 248
>ref|NP_001128245.1| syntaxin-16 isoform d [Homo sapiens].
Length = 308
Score = 76.6 bits (187), Expect = 3e-14
Identities = 37/82 (45%), Positives = 55/82 (67%)
Frame = +3
Query: 633 EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 812
ED++ + EQ+ +++ERE IRQ+ I D+N+IF+DL MI +QG ++D I+ NVE S
Sbjct: 203 EDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSC 262
Query: 813 VHVERATDQLQRAAYYQKKSRK 878
+ E QL +A YQKK+RK
Sbjct: 263 IKTEDGLKQLHKAEQYQKKNRK 284
>ref|NP_001128244.1| syntaxin-16 isoform c [Homo sapiens].
Length = 321
Score = 76.6 bits (187), Expect = 3e-14
Identities = 37/82 (45%), Positives = 55/82 (67%)
Frame = +3
Query: 633 EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 812
ED++ + EQ+ +++ERE IRQ+ I D+N+IF+DL MI +QG ++D I+ NVE S
Sbjct: 216 EDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSC 275
Query: 813 VHVERATDQLQRAAYYQKKSRK 878
+ E QL +A YQKK+RK
Sbjct: 276 IKTEDGLKQLHKAEQYQKKNRK 297
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,594,204
Number of extensions: 892961
Number of successful extensions: 4297
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4090
Number of HSP's successfully gapped: 16
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013466
(1038 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 492 e-136
Sscrofa_Chr01 70 3e-09
>Sscrofa_Chr06
|| Length = 157765593
Score = 492 bits (248), Expect = e-136
Identities = 248/248 (100%)
Strand = Plus / Plus
Query: 2 agtgcgcacgcagcttcatccccttcccagccctttctcttcccggtttccctgtcagcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78460556 agtgcgcacgcagcttcatccccttcccagccctttctcttcccggtttccctgtcagcc 78460615
Query: 62 tgcgggtcgggtctggcggctgcttccggtaggagcgcggtgcagggcaagtcggtctcg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78460616 tgcgggtcgggtctggcggctgcttccggtaggagcgcggtgcagggcaagtcggtctcg 78460675
Query: 122 gctcctcgtcatgtcctacggtcccctagacatgtaccggaacccgggggcctcggggcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78460676 gctcctcgtcatgtcctacggtcccctagacatgtaccggaacccgggggcctcggggcc 78460735
Query: 182 cccgctccgggacttcaacagcatcatccagacgtgcagtggcaacatccagcggatcag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78460736 cccgctccgggacttcaacagcatcatccagacgtgcagtggcaacatccagcggatcag 78460795
Query: 242 ccaagcca 249
||||||||
Sbjct: 78460796 ccaagcca 78460803
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 417 cagcgccagcagaaacttcagaaggaacgtctcatgaatgacttctctgcagccttaaac 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78485160 cagcgccagcagaaacttcagaaggaacgtctcatgaatgacttctctgcagccttaaac 78485219
Query: 477 agtttccaggctgtgcagagaagggtgtctgaaaaggaaaaggagagtattgccagagca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78485220 agtttccaggctgtgcagagaagggtgtctgaaaaggaaaaggagagtattgccagagca 78485279
Query: 537 agagctggatctcgtctttctg 558
||||||||||||||||||||||
Sbjct: 78485280 agagctggatctcgtctttctg 78485301
Score = 242 bits (122), Expect = 3e-61
Identities = 144/149 (96%), Gaps = 2/149 (1%)
Strand = Plus / Plus
Query: 860 tcagaaaaaatctcgcaagaagatctgtatcctgatccttgtcctgtcagtgattattgt 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78500452 tcagaaaaaatctcgcaagaagatctgtatcctgatccttgtcctgtcagtgattattgt 78500511
Query: 920 agtcttgggaattattttgtggataattctaggtaataaatgaagtgatttgcctccaag 979
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 78500512 agtcttgggaattattttgtggataattctaggtaataaatgaagtga-ttgcctccaag 78500570
Query: 980 ccttctt-cgctgactggnttcaggggca 1007
||||||| ||||||||| |||| |||||
Sbjct: 78500571 ccttcttccgctgactgttttcaagggca 78500599
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 599 cagccatgaggagtggaaccagatgcagagccaggaggatgaggtggccatcaccgaaca 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78492763 cagccatgaggagtggaaccagatgcagagccaggaggatgaggtggccatcaccgaaca 78492822
Query: 659 ggatctggaactcattaaagagagggaaacagcgattcggcagctagagg 708
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78492823 ggatctggaactcattaaagagagggaaacagcgattcggcagctagagg 78492872
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 320 gcaacagttacaacactctacaaatcagcttgccaaggaaacaaatgaattactgaagga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78477786 gcaacagttacaacactctacaaatcagcttgccaaggaaacaaatgaattactgaagga 78477845
Query: 380 attagggtccttgccccttcctttatctacttcagaacag 419
||||||||||||||||||||||||||||||||||||||||
Sbjct: 78477846 attagggtccttgccccttcctttatctacttcagaacag 78477885
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 780 gacagcatagaagccaatgtggaaagctcagaggtgcatgtagaaagagctactgatcag 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78498336 gacagcatagaagccaatgtggaaagctcagaggtgcatgtagaaagagctactgatcag 78498395
Query: 840 ttacagcgagctgcttactatcag 863
||||||||||||||||||||||||
Sbjct: 78498396 ttacagcgagctgcttactatcag 78498419
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 706 aggctgacattttggatgtcaatcagatatttaaagatttggccatgatgatccatgacc 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78496794 aggctgacattttggatgtcaatcagatatttaaagatttggccatgatgatccatgacc 78496853
Query: 766 agggtgatctaattg 780
|||||||||||||||
Sbjct: 78496854 agggtgatctaattg 78496868
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 250 ctgctcagataaagaatttgatgagccaactgggaactaagcaggattccagcaagttac 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78476142 ctgctcagataaagaatttgatgagccaactgggaactaagcaggattccagcaagttac 78476201
Query: 310 aggaaaacctg 320
|||||||||||
Sbjct: 78476202 aggaaaacctg 78476212
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 558 gcggaggagaggcaaagagaggaacagctcgtctcgtttgacag 601
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78490841 gcggaggagaggcaaagagaggaacagctcgtctcgtttgacag 78490884
>Sscrofa_Chr01
|| Length = 315321322
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 783 agcatagaagccaatgtggaaagctcagaggtgca 817
|||||||||||||||||||||||||||||||||||
Sbjct: 34753317 agcatagaagccaatgtggaaagctcagaggtgca 34753351
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,054,170
Number of extensions: 233
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 10
Length of query: 1038
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1017
Effective length of database: 2,808,413,156
Effective search space: 2856156179652
Effective search space used: 2856156179652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)