Animal-Genome cDNA 20110601C-013467


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013467
         (1430 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536130.2| PREDICTED: similar to Peroxisomal biogenesis fa...   435   e-122

>ref|XP_536130.2| PREDICTED: similar to Peroxisomal biogenesis factor 19 (Peroxin 19)
           (Peroxisomal farnesylated protein) [Canis familiaris].
          Length = 299

 Score =  435 bits (1119), Expect = e-122
 Identities = 222/251 (88%), Positives = 225/251 (89%)
 Frame = +3

Query: 165 GPEKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 344
           G +KRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL
Sbjct: 49  GAQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 108

Query: 345 SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAXXXXXXXXXXXX 524
           SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKA            
Sbjct: 109 SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAMEGLGMDEGDGE 168

Query: 525 XTILPIMQNIMQNLLSKDVLYPSLKEITEKYPEWLQVHRESLPPEQFEKYQEQHSVMGKI 704
             ILPIMQ+IMQNLLSKDVLYPSLKEITEKYPEWLQ HRESLPPEQFEKYQEQHSVMGKI
Sbjct: 169 GNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMGKI 228

Query: 705 CEQFEAETPTDSEATQKARFEVVXXXXXXXXXXGHPPKELAGEMPPGLNFDLDALNLSGP 884
           CEQFEAETPTDSEATQKARFE+V          GHPPKELAGEMPPGLNFDLDALNLSGP
Sbjct: 229 CEQFEAETPTDSEATQKARFELVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGP 288

Query: 885 PGANGEQCLIM 917
           PGANGEQCLIM
Sbjct: 289 PGANGEQCLIM 299


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,839,824
Number of extensions: 1581528
Number of successful extensions: 6008
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5991
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 369
Effective length of database: 15,307,552
Effective search space: 5648486688
Effective search space used: 5648486688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013467

Animal-Genome cDNA 20110601C-013467


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013467
         (1430 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029712.1| peroxisomal biogenesis factor 19 [Bos taurus].    438   e-123

>ref|NP_001029712.1| peroxisomal biogenesis factor 19 [Bos taurus].
          Length = 299

 Score =  438 bits (1127), Expect = e-123
 Identities = 222/251 (88%), Positives = 227/251 (90%)
 Frame = +3

Query: 165 GPEKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 344
           GP+KRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL
Sbjct: 49  GPQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 108

Query: 345 SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAXXXXXXXXXXXX 524
           SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKA            
Sbjct: 109 SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAMEGLGMDEGDGE 168

Query: 525 XTILPIMQNIMQNLLSKDVLYPSLKEITEKYPEWLQVHRESLPPEQFEKYQEQHSVMGKI 704
            TILPIMQ+IMQNLLS+DVLYPSLKEITEKYPEWL+ HR+SLPPEQFEKYQEQHSVMGKI
Sbjct: 169 GTILPIMQSIMQNLLSRDVLYPSLKEITEKYPEWLRAHRDSLPPEQFEKYQEQHSVMGKI 228

Query: 705 CEQFEAETPTDSEATQKARFEVVXXXXXXXXXXGHPPKELAGEMPPGLNFDLDALNLSGP 884
           CEQFEAETPTDSEATQKARFEVV          GHPPKELAGEMPPGLNFDLDALNLSGP
Sbjct: 229 CEQFEAETPTDSEATQKARFEVVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGP 288

Query: 885 PGANGEQCLIM 917
           PGANGEQCLIM
Sbjct: 289 PGANGEQCLIM 299


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,666,516
Number of extensions: 1541569
Number of successful extensions: 5975
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5960
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 370
Effective length of database: 14,174,046
Effective search space: 5244397020
Effective search space used: 5244397020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013467
         (1430 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001928904.1| PREDICTED: peroxisomal biogenesis factor 19 ...   445   e-125
Alignment   gi|XP_003125714.1| PREDICTED: peroxisomal biogenesis factor 19 ...   390   e-109

>ref|XP_001928904.1| PREDICTED: peroxisomal biogenesis factor 19 isoform 1 [Sus scrofa].
          Length = 299

 Score =  445 bits (1144), Expect = e-125
 Identities = 227/251 (90%), Positives = 228/251 (90%)
 Frame = +3

Query: 165 GPEKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 344
           GPEKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL
Sbjct: 49  GPEKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 108

Query: 345 SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAXXXXXXXXXXXX 524
           SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKA            
Sbjct: 109 SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAMEGLGMEEGDGE 168

Query: 525 XTILPIMQNIMQNLLSKDVLYPSLKEITEKYPEWLQVHRESLPPEQFEKYQEQHSVMGKI 704
            TILPIMQ+IMQNLLSKDVLYPSLKEITEKYPEWLQVHRESLPPEQFEKYQEQHSVMGKI
Sbjct: 169 GTILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQVHRESLPPEQFEKYQEQHSVMGKI 228

Query: 705 CEQFEAETPTDSEATQKARFEVVXXXXXXXXXXGHPPKELAGEMPPGLNFDLDALNLSGP 884
           CEQFEAETPTDSEATQKARFEVV          GHPPKELAGEMPPGLNFDLDALNLSGP
Sbjct: 229 CEQFEAETPTDSEATQKARFEVVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGP 288

Query: 885 PGANGEQCLIM 917
           PGANGEQCLIM
Sbjct: 289 PGANGEQCLIM 299


>ref|XP_003125714.1| PREDICTED: peroxisomal biogenesis factor 19 isoform 2 [Sus scrofa].
          Length = 279

 Score =  390 bits (1003), Expect = e-109
 Identities = 202/229 (88%), Positives = 203/229 (88%)
 Frame = +3

Query: 165 GPEKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 344
           GPEKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL
Sbjct: 49  GPEKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 108

Query: 345 SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAXXXXXXXXXXXX 524
           SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKA            
Sbjct: 109 SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAMEGLGMEEGDGE 168

Query: 525 XTILPIMQNIMQNLLSKDVLYPSLKEITEKYPEWLQVHRESLPPEQFEKYQEQHSVMGKI 704
            TILPIMQ+IMQNLLSKDVLYPSLKEITEKYPEWLQVHRESLPPEQFEKYQEQHSVMGKI
Sbjct: 169 GTILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQVHRESLPPEQFEKYQEQHSVMGKI 228

Query: 705 CEQFEAETPTDSEATQKARFEVVXXXXXXXXXXGHPPKELAGEMPPGLN 851
           CEQFEAETPTDSEATQKARFEVV          GHPPKELAGEM P  N
Sbjct: 229 CEQFEAETPTDSEATQKARFEVVLDLMQQLQDLGHPPKELAGEMVPMAN 277


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,262,318
Number of extensions: 995044
Number of successful extensions: 3985
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3974
Number of HSP's successfully gapped: 2
Length of query: 476
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 373
Effective length of database: 8,779,541
Effective search space: 3274768793
Effective search space used: 3274768793
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013467
         (1430 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_075528.3| peroxisomal biogenesis factor 19 isoform a [Mus...   420   e-117
Alignment   gi|NP_001152997.1| peroxisomal biogenesis factor 19 isoform b [...   292   5e-79

>ref|NP_075528.3| peroxisomal biogenesis factor 19 isoform a [Mus musculus].
          Length = 299

 Score =  420 bits (1080), Expect = e-117
 Identities = 212/251 (84%), Positives = 223/251 (88%)
 Frame = +3

Query: 165 GPEKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 344
           GP+KR+PGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL
Sbjct: 49  GPQKRAPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 108

Query: 345 SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAXXXXXXXXXXXX 524
           SEAAGRVGSDA+SQQEFTSCLKETLSGLAKNAT+LQNSGMSEEEL KA            
Sbjct: 109 SEAAGRVGSDASSQQEFTSCLKETLSGLAKNATELQNSGMSEEELMKAMEGLGMDEGDGE 168

Query: 525 XTILPIMQNIMQNLLSKDVLYPSLKEITEKYPEWLQVHRESLPPEQFEKYQEQHSVMGKI 704
            +ILPIMQ+IMQNLLSKDVLYPSLKEITEKYPEWLQ H++S PPEQFEKYQ+QHSVM KI
Sbjct: 169 ASILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHQDSTPPEQFEKYQQQHSVMVKI 228

Query: 705 CEQFEAETPTDSEATQKARFEVVXXXXXXXXXXGHPPKELAGEMPPGLNFDLDALNLSGP 884
           CEQFEAETPTDSEATQ+ARFE +          GHPPKELAGEMPPGLNFDLDALNLSGP
Sbjct: 229 CEQFEAETPTDSEATQRARFEAMLDLMQQLQALGHPPKELAGEMPPGLNFDLDALNLSGP 288

Query: 885 PGANGEQCLIM 917
           PGANGEQCLIM
Sbjct: 289 PGANGEQCLIM 299


>ref|NP_001152997.1| peroxisomal biogenesis factor 19 isoform b [Mus musculus].
          Length = 207

 Score =  292 bits (747), Expect = 5e-79
 Identities = 146/183 (79%), Positives = 155/183 (84%)
 Frame = +3

Query: 369 SDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAXXXXXXXXXXXXXTILPIMQ 548
           SDA+SQQEFTSCLKETLSGLAKNAT+LQNSGMSEEEL KA             +ILPIMQ
Sbjct: 25  SDASSQQEFTSCLKETLSGLAKNATELQNSGMSEEELMKAMEGLGMDEGDGEASILPIMQ 84

Query: 549 NIMQNLLSKDVLYPSLKEITEKYPEWLQVHRESLPPEQFEKYQEQHSVMGKICEQFEAET 728
           +IMQNLLSKDVLYPSLKEITEKYPEWLQ H++S PPEQFEKYQ+QHSVM KICEQFEAET
Sbjct: 85  SIMQNLLSKDVLYPSLKEITEKYPEWLQSHQDSTPPEQFEKYQQQHSVMVKICEQFEAET 144

Query: 729 PTDSEATQKARFEVVXXXXXXXXXXGHPPKELAGEMPPGLNFDLDALNLSGPPGANGEQC 908
           PTDSEATQ+ARFE +          GHPPKELAGEMPPGLNFDLDALNLSGPPGANGEQC
Sbjct: 145 PTDSEATQRARFEAMLDLMQQLQALGHPPKELAGEMPPGLNFDLDALNLSGPPGANGEQC 204

Query: 909 LIM 917
           LIM
Sbjct: 205 LIM 207


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,273,399
Number of extensions: 1302773
Number of successful extensions: 4713
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4686
Number of HSP's successfully gapped: 2
Length of query: 476
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 371
Effective length of database: 12,463,779
Effective search space: 4624062009
Effective search space used: 4624062009
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013467
         (1430 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002848.1| peroxisomal biogenesis factor 19 isoform a [Hom...   427   e-119
Alignment   gi|NP_001180573.1| peroxisomal biogenesis factor 19 isoform c [...   375   e-104

>ref|NP_002848.1| peroxisomal biogenesis factor 19 isoform a [Homo sapiens].
          Length = 299

 Score =  427 bits (1098), Expect = e-119
 Identities = 218/251 (86%), Positives = 222/251 (88%)
 Frame = +3

Query: 165 GPEKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 344
           GP+KRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL
Sbjct: 49  GPQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 108

Query: 345 SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAXXXXXXXXXXXX 524
           SEAAGRVGSD TSQQEFTSCLKETLSGLAKNATDLQNS MSEEELTKA            
Sbjct: 109 SEAAGRVGSDMTSQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGE 168

Query: 525 XTILPIMQNIMQNLLSKDVLYPSLKEITEKYPEWLQVHRESLPPEQFEKYQEQHSVMGKI 704
             ILPIMQ+IMQNLLSKDVLYPSLKEITEKYPEWLQ HRESLPPEQFEKYQEQHSVM KI
Sbjct: 169 GNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKI 228

Query: 705 CEQFEAETPTDSEATQKARFEVVXXXXXXXXXXGHPPKELAGEMPPGLNFDLDALNLSGP 884
           CEQFEAETPTDSE TQKARFE+V          GHPPKELAGEMPPGLNFDLDALNLSGP
Sbjct: 229 CEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGP 288

Query: 885 PGANGEQCLIM 917
           PGA+GEQCLIM
Sbjct: 289 PGASGEQCLIM 299


>ref|NP_001180573.1| peroxisomal biogenesis factor 19 isoform c [Homo sapiens].
          Length = 279

 Score =  375 bits (964), Expect = e-104
 Identities = 194/229 (84%), Positives = 198/229 (86%)
 Frame = +3

Query: 165 GPEKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 344
           GP+KRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL
Sbjct: 49  GPQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKL 108

Query: 345 SEAAGRVGSDATSQQEFTSCLKETLSGLAKNATDLQNSGMSEEELTKAXXXXXXXXXXXX 524
           SEAAGRVGSD TSQQEFTSCLKETLSGLAKNATDLQNS MSEEELTKA            
Sbjct: 109 SEAAGRVGSDMTSQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGE 168

Query: 525 XTILPIMQNIMQNLLSKDVLYPSLKEITEKYPEWLQVHRESLPPEQFEKYQEQHSVMGKI 704
             ILPIMQ+IMQNLLSKDVLYPSLKEITEKYPEWLQ HRESLPPEQFEKYQEQHSVM KI
Sbjct: 169 GNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKI 228

Query: 705 CEQFEAETPTDSEATQKARFEVVXXXXXXXXXXGHPPKELAGEMPPGLN 851
           CEQFEAETPTDSE TQKARFE+V          GHPPKELAGEM P +N
Sbjct: 229 CEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKELAGEMVPVVN 277


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,967,856
Number of extensions: 1562186
Number of successful extensions: 5993
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5974
Number of HSP's successfully gapped: 2
Length of query: 476
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 370
Effective length of database: 14,802,980
Effective search space: 5477102600
Effective search space used: 5477102600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013467
         (1430 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                        1142   0.0  
Sscrofa_Chr10                                                         622   e-175

>Sscrofa_Chr04 
||          Length = 143465943

 Score = 1142 bits (576), Expect = 0.0
 Identities = 592/596 (99%), Gaps = 1/596 (0%)
 Strand = Plus / Plus

                                                                            
Query: 836      gcctcctggcctcaactttgacctggatgccctcaatctatcgggcccaccaggtgccaa 895
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98092368 gcctcctggcctcaactttgacctggatgccctcaatctatcgggcccaccaggtgccaa 98092427

                                                                            
Query: 896      tggcgaacaatgtctgatcatgtgaaacacagcacgctttccttcctgattcccagctgt 955
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98092428 tggcgaacaatgtctgatcatgtgaaacacagcacgctttccttcctgattcccagctgt 98092487

                                                                            
Query: 956      ggggaacgactggagtcagcagaaccactgggagctgaggcaggagtgtcgtctacagga 1015
                |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98092488 ggggaacgtctggagtcagcagaaccactgggagctgaggcaggagtgtcgtctacagga 98092547

                                                                            
Query: 1016     gtggtctgcccactgccatctgtcatgccacccaagattgtgccataccagctgaggctt 1075
                |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 98092548 gtggtctgcccactgccatctgtcatcccacccaagattgtgccataccagctgaggctt 98092607

                                                                            
Query: 1076     tctctctgtctttctgagaataaggcctgttccacagctcatttctgtgagcccgttcca 1135
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98092608 tctctctgtctttctgagaataaggcctgttccacagctcatttctgtgagcccgttcca 98092667

                                                                            
Query: 1136     ttgtggtttctgctgctagcaaaggcccggctccccaccaggtgaaggaggcatcggttt 1195
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98092668 ttgtggtttctgctgctagcaaaggcccggctccccaccaggtgaaggaggcatcggttt 98092727

                                                                            
Query: 1196     taaggcatgcatcttcttccctctcccaagataacgtgtagggccacactaatgttcact 1255
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98092728 taaggcatgcatcttcttccctctcccaagataacgtgtagggccacactaatgttcact 98092787

                                                                            
Query: 1256     tttgta-ccagggtctttgtgccttgtctctactccctctcttggaccccggggagcagg 1314
                |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98092788 tttgtacccagggtctttgtgccttgtctctactccctctcttggaccccggggagcagg 98092847

                                                                            
Query: 1315     gacagagtcctgggactctgtttctacagttctcttgggcagggccttggggaatgaatg 1374
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 98092848 gacagagtcctgggactctgtttctacagttctcttgggcagggcctttgggaatgaatg 98092907

                                                                        
Query: 1375     gggagaaacttagcctgagctgggactacaggtctgtcactacaccctcttacctt 1430
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98092908 gggagaaacttagcctgagctgggactacaggtctgtcactacaccctcttacctt 98092963



 Score =  355 bits (179), Expect = 4e-95
 Identities = 179/179 (100%)
 Strand = Plus / Plus

                                                                            
Query: 613      agtatccagaatggttgcaggttcaccgagaatctctacctccagagcagtttgaaaaat 672
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98091746 agtatccagaatggttgcaggttcaccgagaatctctacctccagagcagtttgaaaaat 98091805

                                                                            
Query: 673      atcaggagcaacatagtgtcatgggcaagatatgtgagcaatttgaggctgagaccccca 732
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98091806 atcaggagcaacatagtgtcatgggcaagatatgtgagcaatttgaggctgagaccccca 98091865

                                                                           
Query: 733      cagacagtgaggccactcagaaggctcgttttgaggtggtgctggatcttatgcagcag 791
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98091866 cagacagtgaggccactcagaaggctcgttttgaggtggtgctggatcttatgcagcag 98091924



 Score =  331 bits (167), Expect = 6e-88
 Identities = 167/167 (100%)
 Strand = Plus / Plus

                                                                            
Query: 201      gatgccctcttcgcctcccaagagaagtttttccaggagctgttcgacagcgagttggct 260
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98089549 gatgccctcttcgcctcccaagagaagtttttccaggagctgttcgacagcgagttggct 98089608

                                                                            
Query: 261      tcccaagccactgcagagttcgagaaggcaatgaaagagttggctgaggaagagccccac 320
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98089609 tcccaagccactgcagagttcgagaaggcaatgaaagagttggctgaggaagagccccac 98089668

                                                               
Query: 321      ctggtagagcagttccaaaagctctcagaggctgctgggagagtggg 367
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98089669 ctggtagagcagttccaaaagctctcagaggctgctgggagagtggg 98089715



 Score =  309 bits (156), Expect = 2e-81
 Identities = 162/164 (98%)
 Strand = Plus / Plus

                                                                            
Query: 451      agaactccggcatgtcagaagaggagctgaccaaggccatggaagggctgggcatggaag 510
                ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090496 agaactcgggcatgtcagaagaggagctgaccaaggccatggaagggctgggcatggaag 98090555

                                                                            
Query: 511      aaggggatggagaaggaaccatactccccatcatgcagaatatcatgcagaacctgctgt 570
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 98090556 aaggggatggagaaggaaccatactccccatcatgcagagtatcatgcagaacctgctgt 98090615

                                                            
Query: 571      ccaaggatgtactgtacccgtcactgaaggagattacggagaag 614
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090616 ccaaggatgtactgtacccgtcactgaaggagattacggagaag 98090659



 Score =  220 bits (111), Expect = 2e-54
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                            
Query: 91       gtgctcttgatgatttcgataagaccaaaccctccccagcaccccctcctaccaccacgg 150
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98089024 gtgctcttgatgatttcgataagaccaaaccctccccagcaccccctcctaccaccacgg 98089083

                                                                   
Query: 151      cccctgatgcttcggggcctgagaagagatctccaggagacactgccaaag 201
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98089084 cccctgatgcttcggggcctgagaagagatctccaggagacactgccaaag 98089134



 Score =  178 bits (90), Expect = 6e-42
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                            
Query: 3        caagtcggaggtggcaagatggccgccgctggggagggtggtggtgttggggctgaagcg 62
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98087518 caagtcggaggtggcaagatggccgccgctggggagggtggtggtgttggggctgaagcg 98087577

                                              
Query: 63       gaccgggaattggaagagcttctggaaagt 92
                ||||||||||||||||||||||||||||||
Sbjct: 98087578 gaccgggaattggaagagcttctggaaagt 98087607



 Score =  172 bits (87), Expect = 3e-40
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                            
Query: 366      ggcagtgatgcgacttcccaacaagaattcacttcttgcctaaaggagacattaagtgga 425
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090196 ggcagtgatgcgacttcccaacaagaattcacttcttgcctaaaggagacattaagtgga 98090255

                                           
Query: 426      ctagccaagaatgccaccgaccttcag 452
                |||||||||||||||||||||||||||
Sbjct: 98090256 ctagccaagaatgccaccgaccttcag 98090282



 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                               
Query: 790      agctacaggatttgggccatcctccaaaagagctggctggggagatg 836
                |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 98092162 agctacaggatttgggtcatcctccaaaagagctggctggggagatg 98092208


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  622 bits (314), Expect = e-175
 Identities = 931/1131 (82%), Gaps = 38/1131 (3%)
 Strand = Plus / Minus

                                                                            
Query: 63       gaccgggaattggaagagcttctggaaagtgctcttgatgatttcgataagaccaaaccc 122
                |||| ||||| |||| |||||||||||||| ||||||| |||||| ||||| ||||||||
Sbjct: 38401022 gaccaggaatgggaaaagcttctggaaagttctcttgaggatttctataaggccaaaccc 38400963

                                                                            
Query: 123      tccccagcaccccctcctaccaccacggcccctgatgcttcggggcctgagaagagatct 182
                ||||||||| |||||||||||||| | ||||||||                 ||||||||
Sbjct: 38400962 tccccagcatcccctcctaccacctcagcccctga-----------------agagatct 38400920

                                                                            
Query: 183      ccaggagacactgccaaagatgccctcttcgcctcccaagagaagtttttccaggagctg 242
                |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | 
Sbjct: 38400919 ccaggagacactgccaaagatgccctcttcacctcccaagagaagtttttccaggaatta 38400860

                                                                            
Query: 243      ttcgacagcgagttggcttcccaagccactgcagagttcgagaaggcaatgaaagagttg 302
                |||      ||| |||||||| |||||||||| |||||  ||||||||||||||||||||
Sbjct: 38400859 ttcattcatgagctggcttcctaagccactgctgagtt--agaaggcaatgaaagagttg 38400802

                                                                            
Query: 303      gctgaggaagagccccacctggtagagcagttccaaaagctctcagaggctgctgggaga 362
                ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||   ||
Sbjct: 38400801 gctgaggaagatccccacctggcagagcagttcccaaagctctcagaggctgctgcagga 38400742

                                                                            
Query: 363      gtgggcagtgatgcgacttcccaacaagaattcacttcttgcctaaaggagacattaagt 422
                 ||| |||||||||||  ||||||||| | ||||||||| |||||||||| |||||||||
Sbjct: 38400741 atggacagtgatgcgatgtcccaacaaaacttcacttctcgcctaaaggatacattaagt 38400682

                                                                            
Query: 423      ggactagccaagaatgccaccgaccttcagaactccggcatgtcagaagaggagctgacc 482
                |||||||||||| | ||||| || ||| |||||||  || | ||||||||| ||||||| 
Sbjct: 38400681 ggactagccaaggacgccactgatcttgagaactctagcttatcagaagagaagctgact 38400622

                                                                            
Query: 483      aaggccatggaagggctgggcatggaagaaggggatggagaaggaac--catactcccca 540
                | ||||||||||  ||| |||||||| |||||||||||| | |   |  |||    ||| 
Sbjct: 38400621 atggccatggaacagctaggcatggatgaaggggatggatacgccccatcatgtatccc- 38400563

                                                                            
Query: 541      tcatgcagaatatcatgcagaacctgctgtccaaggatgtactgtacccgtcactgaagg 600
                 |||||||| ||||| ||||||||| |  || ||||||| ||||||||| |||| ||| |
Sbjct: 38400562 -catgcagagtatcaggcagaacctaccatctaaggatgcactgtacccatcaccgaacg 38400504

                                                                            
Query: 601      agattacg-gagaagtatccagaatggttgcaggttcaccgagaatctctacctccagag 659
                || | ||  ||||||||||  || |||||||||  |||| |||||||||||||| |||||
Sbjct: 38400503 aggtcacaagagaagtatctggattggttgcagactcactgagaatctctaccttcagag 38400444

                                                                            
Query: 660      cagtttgaaaaatatcaggagcaacatagtgtcatgggcaagatatgtgagcaatttgag 719
                |||||||||||||||| |||  |||| ||||||||||||||||| |||||||| ||||| 
Sbjct: 38400443 cagtttgaaaaatatctggaagaacacagtgtcatgggcaagatttgtgagcagtttgat 38400384

                                                                            
Query: 720      gctgagacccccacagacagtgaggccactcagaaggctcgttttgaggtggtgctggat 779
                ||  ||||||||||||||||    |||||||||||||||| |||| || ||||||||| |
Sbjct: 38400383 gcacagacccccacagacag----gccactcagaaggctcattttaag-tggtgctgggt 38400329

                                                                            
Query: 780      cttatgcagcagctacaggatttgggccatcctccaaaagagctggctggggagatgcct 839
                | | ||||||||| ||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct: 38400328 cat-tgcagcagccacaggatgtgggccatccttcaaaagagctggctagggagatgcct 38400270

                                                                            
Query: 840      cctggcctcaactttgacctggatgccctcaatctatcgggcccaccaggtgccaatggc 899
                || |||||||| || |||||||| ||| |||||||||| ||| |||||||||||| ||| 
Sbjct: 38400269 cccggcctcaatttcgacctggacgccttcaatctatcaggctcaccaggtgccagtggt 38400210

                                                                            
Query: 900      gaacaatgtctgatcatgtgaaacacagcacgctttccttcctgattcccagctgtgggg 959
                | |   ||||||||| | |||||  || || |||||||||||||||||||| |    |||
Sbjct: 38400209 gtatggtgtctgatcctatgaaatgcaacatgctttccttcctgattcccaaccacaggg 38400150

                                                                            
Query: 960      aacgactggagtcagcagaaccactgggagctgaggcaggagtgtcgtctacaggagtgg 1019
                |||  ||||  ||||||||| ||  ||||||||||||||||||||| |||| |||||  |
Sbjct: 38400149 aacatctggcatcagcagaatcagcgggagctgaggcaggagtgtcatctataggagcag 38400090

                                                                            
Query: 1020     tctgcccactgccatctgtcatgccacccaagattgtgccataccagctgaggctttctc 1079
                  | |||| || ||||| |||| |||||| ||| |||||||||  |||  ||||||| ||
Sbjct: 38400089 attacccattgtcatct-tcatcccaccccagactgtgccatatgagccaaggctttttc 38400031

                                                                            
Query: 1080     tctgtctttc------tgagaataaggcctgttccacagctcatttctgtgagcccgttc 1133
                ||||||||||      | |||||||||||||| |  ||| | |||||| ||||| | || 
Sbjct: 38400030 tctgtctttctagagataagaataaggcctgtcctgcagataatttctatgagcacttta 38399971

                                                                   
Query: 1134     cattgtggtttctgctgctagcaaaggcccggctccccaccaggtgaagga 1184
                || |||||||||  |||||||||||||||| ||| |||||||| |||||||
Sbjct: 38399970 cactgtggtttccactgctagcaaaggcccagct-cccaccagatgaagga 38399921



 Score =  615 bits (310), Expect = e-173
 Identities = 930/1131 (82%), Gaps = 38/1131 (3%)
 Strand = Plus / Minus

                                                                            
Query: 63       gaccgggaattggaagagcttctggaaagtgctcttgatgatttcgataagaccaaaccc 122
                |||| ||||| |||| |||||||||||||| ||||||| |||||| ||||| ||||||||
Sbjct: 38520334 gaccaggaatgggaaaagcttctggaaagttctcttgaggatttctataaggccaaaccc 38520275

                                                                            
Query: 123      tccccagcaccccctcctaccaccacggcccctgatgcttcggggcctgagaagagatct 182
                ||||||||| |||||||||||||| | ||||||||                 ||||||||
Sbjct: 38520274 tccccagcatcccctcctaccacctcagcccctga-----------------agagatct 38520232

                                                                            
Query: 183      ccaggagacactgccaaagatgccctcttcgcctcccaagagaagtttttccaggagctg 242
                |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | 
Sbjct: 38520231 ccaggagacactgccaaagatgccctcttcacctcccaagagaagtttttccaggaatta 38520172

                                                                            
Query: 243      ttcgacagcgagttggcttcccaagccactgcagagttcgagaaggcaatgaaagagttg 302
                |||      ||| |||||||| |||||||||| |||||  ||||||||||||||||||||
Sbjct: 38520171 ttcattcatgagctggcttcctaagccactgctgagtt--agaaggcaatgaaagagttg 38520114

                                                                            
Query: 303      gctgaggaagagccccacctggtagagcagttccaaaagctctcagaggctgctgggaga 362
                ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||   ||
Sbjct: 38520113 gctgaggaagatccccacctggcagagcagttcccaaagctctcagaggctgctgcagga 38520054

                                                                            
Query: 363      gtgggcagtgatgcgacttcccaacaagaattcacttcttgcctaaaggagacattaagt 422
                 ||| |||||||||||  ||||||||| | ||||||||| |||||||||| |||||||||
Sbjct: 38520053 atggacagtgatgcgatgtcccaacaaaacttcacttctcgcctaaaggatacattaagt 38519994

                                                                            
Query: 423      ggactagccaagaatgccaccgaccttcagaactccggcatgtcagaagaggagctgacc 482
                |||||||||||| | ||||| || ||| |||||||  || | ||||||||| ||||||| 
Sbjct: 38519993 ggactagccaaggacgccactgatcttgagaactctagcttatcagaagagaagctgact 38519934

                                                                            
Query: 483      aaggccatggaagggctgggcatggaagaaggggatggagaaggaac--catactcccca 540
                | ||||||||||  ||| |||||||| |||||||||||| | |   |  |||    ||| 
Sbjct: 38519933 atggccatggaacagctaggcatggatgaaggggatggatacgccccatcatgtatccc- 38519875

                                                                            
Query: 541      tcatgcagaatatcatgcagaacctgctgtccaaggatgtactgtacccgtcactgaagg 600
                 |||||||| ||||| ||||||||| |  || ||||||| ||||||||| ||||  || |
Sbjct: 38519874 -catgcagagtatcaggcagaacctaccatctaaggatgcactgtacccatcaccaaacg 38519816

                                                                            
Query: 601      agattacg-gagaagtatccagaatggttgcaggttcaccgagaatctctacctccagag 659
                || | ||  ||||||||||  || |||||||||  |||| |||||||||||||| |||||
Sbjct: 38519815 aggtcacaagagaagtatctggattggttgcagactcactgagaatctctaccttcagag 38519756

                                                                            
Query: 660      cagtttgaaaaatatcaggagcaacatagtgtcatgggcaagatatgtgagcaatttgag 719
                |||||||||||||||| |||  |||| ||||||||||||||||| |||||||| ||||| 
Sbjct: 38519755 cagtttgaaaaatatctggaagaacacagtgtcatgggcaagatttgtgagcagtttgat 38519696

                                                                            
Query: 720      gctgagacccccacagacagtgaggccactcagaaggctcgttttgaggtggtgctggat 779
                ||  ||||||||||||||||    |||||||||||||||| |||| || ||||||||| |
Sbjct: 38519695 gcacagacccccacagacag----gccactcagaaggctcattttaag-tggtgctgggt 38519641

                                                                            
Query: 780      cttatgcagcagctacaggatttgggccatcctccaaaagagctggctggggagatgcct 839
                | | ||||||||| ||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct: 38519640 cat-tgcagcagccacaggatgtgggccatccttcaaaagagctggctagggagatgcct 38519582

                                                                            
Query: 840      cctggcctcaactttgacctggatgccctcaatctatcgggcccaccaggtgccaatggc 899
                || |||||||| || |||||||| ||| |||||||||| ||| |||||||||||| ||| 
Sbjct: 38519581 cccggcctcaatttcgacctggacgccttcaatctatcaggctcaccaggtgccagtggt 38519522

                                                                            
Query: 900      gaacaatgtctgatcatgtgaaacacagcacgctttccttcctgattcccagctgtgggg 959
                | |   ||||||||| | |||||  || || |||||||||||||||||||| |    |||
Sbjct: 38519521 gtatggtgtctgatcctatgaaatgcaacatgctttccttcctgattcccaaccacaggg 38519462

                                                                            
Query: 960      aacgactggagtcagcagaaccactgggagctgaggcaggagtgtcgtctacaggagtgg 1019
                |||  ||||  ||||||||| ||  ||||||||||||||||||||| |||| |||||  |
Sbjct: 38519461 aacatctggcatcagcagaatcagcgggagctgaggcaggagtgtcatctataggagcag 38519402

                                                                            
Query: 1020     tctgcccactgccatctgtcatgccacccaagattgtgccataccagctgaggctttctc 1079
                  | |||| || ||||| |||| |||||| ||| |||||||||  |||  ||||||| ||
Sbjct: 38519401 attacccattgtcatct-tcatcccaccccagactgtgccatatgagccaaggctttttc 38519343

                                                                            
Query: 1080     tctgtctttc------tgagaataaggcctgttccacagctcatttctgtgagcccgttc 1133
                ||||||||||      | |||||||||||||| |  ||| | |||||| ||||| | || 
Sbjct: 38519342 tctgtctttctagagataagaataaggcctgtcctgcagataatttctatgagcacttta 38519283

                                                                   
Query: 1134     cattgtggtttctgctgctagcaaaggcccggctccccaccaggtgaagga 1184
                || |||||||||  |||||||||||||||| ||| |||||||| |||||||
Sbjct: 38519282 cactgtggtttccactgctagcaaaggcccagct-cccaccagatgaagga 38519233



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 58/63 (92%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                            
Query: 1238     gccacactaatgttcacttttgtac-cagggtctttgtgccttgtctctactccctctct 1296
                |||||||| |||||||||||||||| |||||||||  ||||||| |||||||||||||||
Sbjct: 38399600 gccacactgatgttcacttttgtactcagggtcttcttgccttgcctctactccctctct 38399541

                   
Query: 1297     tgg 1299
                |||
Sbjct: 38399540 tgg 38399538



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 58/63 (92%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                            
Query: 1238     gccacactaatgttcacttttgtac-cagggtctttgtgccttgtctctactccctctct 1296
                |||||||| |||||||||||||||| |||||||||  ||||||| |||||||||||||||
Sbjct: 38518909 gccacactgatgttcacttttgtactcagggtcttcttgccttgcctctactccctctct 38518850

                   
Query: 1297     tgg 1299
                |||
Sbjct: 38518849 tgg 38518847


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,574,930
Number of extensions: 349
Number of successful extensions: 349
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 20
Length of query: 1430
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1409
Effective length of database: 2,808,413,156
Effective search space: 3957054136804
Effective search space used: 3957054136804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)