Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013468
(1007 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039427.1| proteasome subunit alpha type-6 [Bos taurus]. 496 e-140
Alignment gi|NP_001029405.1| proteasome subunit alpha type-7 [Bos taurus]. 136 3e-32
Alignment gi|NP_001029834.1| proteasome subunit alpha type-2 [Bos taurus]. 134 1e-31
Alignment gi|XP_002684819.1| PREDICTED: proteasome alpha 2 subunit-like [... 134 1e-31
Alignment gi|XP_001788024.1| PREDICTED: proteasome alpha 2 subunit [Bos t... 134 1e-31
Alignment gi|NP_001029553.1| proteasome subunit alpha type-4 [Bos taurus]. 131 8e-31
Alignment gi|XP_002697763.1| PREDICTED: proteasome alpha 7 subunit-like [... 125 6e-29
Alignment gi|XP_871384.2| PREDICTED: proteasome alpha 7 subunit-like [Bos... 125 6e-29
Alignment gi|NP_001029407.1| proteasome subunit alpha type-3 [Bos taurus]. 117 2e-26
Alignment gi|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus]. 115 8e-26
>ref|NP_001039427.1| proteasome subunit alpha type-6 [Bos taurus].
Length = 246
Score = 496 bits (1276), Expect = e-140
Identities = 246/246 (100%), Positives = 246/246 (100%)
Frame = +2
Query: 95 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 274
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 275 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 454
LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 455 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 634
ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 635 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 814
KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 240
Query: 815 ALAERD 832
ALAERD
Sbjct: 241 ALAERD 246
>ref|NP_001029405.1| proteasome subunit alpha type-7 [Bos taurus].
Length = 248
Score = 136 bits (342), Expect = 3e-32
Identities = 81/234 (34%), Positives = 128/234 (54%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR IT+FSP+G L+QVEYA +A+ +G T+V VRGKD V+ +KK KL D TV
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGKDIVVLGVEKKSVAKLQDERTVRK 61
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 478
+ + +N+ G+TAD+R + RAR E + + + V+ + + IA + Q YTQ+
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 479 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 658
RP G +++G D + P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 181
Query: 659 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 820
T + T++ I L V+ K IE+ V+ + P +IL EI+ ++ +
Sbjct: 182 ETDDLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILNPEEIEKYVAEI 232
>ref|NP_001029834.1| proteasome subunit alpha type-2 [Bos taurus].
Length = 234
Score = 134 bits (338), Expect = 1e-31
Identities = 84/236 (35%), Positives = 123/236 (52%)
Frame = +2
Query: 116 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 295
G+ +T FSP G+L Q+EYA A+ GG SV ++ + V+ T+KK L D +V
Sbjct: 5 GYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 63
Query: 296 HLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ 475
+ IT++IG V +GM D R V RAR A + Y IP L +R+A + Q YTQ
Sbjct: 64 KVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQ 123
Query: 476 NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKF 655
+ +RP G +++ G +E + P +++ DP+G Y +KATA G +FLEK+ +
Sbjct: 124 SGGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE-- 180
Query: 656 DWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALA 823
D E + TAI L IEVG+ FR LT E+ +L A+A
Sbjct: 181 DLELEDAIHTAILTLKESFEGQMTEDNIEVGI--CNEAGFRRLTPTEVKDYLAAIA 234
>ref|XP_002684819.1| PREDICTED: proteasome alpha 2 subunit-like [Bos taurus].
Length = 234
Score = 134 bits (338), Expect = 1e-31
Identities = 84/236 (35%), Positives = 123/236 (52%)
Frame = +2
Query: 116 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 295
G+ +T FSP G+L Q+EYA A+ GG SV ++ + V+ T+KK L D +V
Sbjct: 5 GYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 63
Query: 296 HLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ 475
+ IT++IG V +GM D R V RAR A + Y IP L +R+A + Q YTQ
Sbjct: 64 KVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQ 123
Query: 476 NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKF 655
+ +RP G +++ G +E + P +++ DP+G Y +KATA G +FLEK+ +
Sbjct: 124 SCGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE-- 180
Query: 656 DWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALA 823
D E + TAI L IEVG+ FR LT E+ +L A+A
Sbjct: 181 DLELEDAIHTAILTLKESFEGQMTEDNIEVGI--CNEAGFRRLTPTEVKDYLAAIA 234
>ref|XP_001788024.1| PREDICTED: proteasome alpha 2 subunit [Bos taurus].
Length = 234
Score = 134 bits (338), Expect = 1e-31
Identities = 84/236 (35%), Positives = 123/236 (52%)
Frame = +2
Query: 116 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 295
G+ +T FSP G+L Q+EYA A+ GG SV ++ + V+ T+KK L D +V
Sbjct: 5 GYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 63
Query: 296 HLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ 475
+ IT++IG V +GM D R V RAR A + Y IP L +R+A + Q YTQ
Sbjct: 64 KVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQ 123
Query: 476 NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKF 655
+ +RP G +++ G +E + P +++ DP+G Y +KATA G +FLEK+ +
Sbjct: 124 SCGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE-- 180
Query: 656 DWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALA 823
D E + TAI L IEVG+ FR LT E+ +L A+A
Sbjct: 181 DLELEDAIHTAILTLKESFEGQMTEDNIEVGI--CNEAGFRRLTPTEVKDYLAAIA 234
>ref|NP_001029553.1| proteasome subunit alpha type-4 [Bos taurus].
Length = 261
Score = 131 bits (330), Expect = 8e-31
Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 4/235 (1%)
Frame = +2
Query: 110 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST 289
S +D TIFSPEGRLYQVEYA +AI G T + + D ++ +++ KLLD
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 290 VTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQV 466
+ ++K+ E++ C + G+T+D+ R A + +Y IP + L + DI Q
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120
Query: 467 YTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 646
YTQ RP G ++ IG D+ G Q+Y+ DP+G Y G+KAT G + S L K+
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML-KQDY 179
Query: 647 KKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPK--FRILTEAEID 802
K+ + T + + AI L+ + + ++E+ +T EN K R+L + E++
Sbjct: 180 KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 234
>ref|XP_002697763.1| PREDICTED: proteasome alpha 7 subunit-like [Bos taurus].
Length = 250
Score = 125 bits (314), Expect = 6e-29
Identities = 73/228 (32%), Positives = 123/228 (53%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR IT+FSP+G L+QVEYA +A+ +G T+V +RG + V+ +KK KL D TV
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKLQDERTVRK 63
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 478
+ + +++ G+TAD+R + +AR E + K + V+ + + IA + Q YTQ+
Sbjct: 64 ICALDDHVCMAFAGLTADARVVINKARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQS 123
Query: 479 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 658
RP G +++G D++ P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 124 NGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAI 183
Query: 659 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEID 802
+ ++ AI L V+ K IE+ ++ N ++ + EI+
Sbjct: 184 ANDNEAIKLAIRALLEVVQSGGK--NIELAIIR-RNQPLKMFSAKEIE 228
>ref|XP_871384.2| PREDICTED: proteasome alpha 7 subunit-like [Bos taurus].
Length = 250
Score = 125 bits (314), Expect = 6e-29
Identities = 73/228 (32%), Positives = 123/228 (53%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR IT+FSP+G L+QVEYA +A+ +G T+V +RG + V+ +KK KL D TV
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKLQDERTVRK 63
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 478
+ + +++ G+TAD+R + +AR E + K + V+ + + IA + Q YTQ+
Sbjct: 64 ICALDDHVCMAFAGLTADARVVINKARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQS 123
Query: 479 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 658
RP G +++G D++ P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 124 NGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAI 183
Query: 659 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEID 802
+ ++ AI L V+ K IE+ ++ N ++ + EI+
Sbjct: 184 ANDNEAIKLAIRALLEVVQSGGK--NIELAIIR-RNQPLKMFSAKEIE 228
>ref|NP_001029407.1| proteasome subunit alpha type-3 [Bos taurus].
Length = 255
Score = 117 bits (293), Expect = 2e-26
Identities = 62/179 (34%), Positives = 97/179 (54%)
Frame = +2
Query: 116 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 295
G+D + FSP+GR++QVEYA KA+ T++ +R KD V +K V KL + +
Sbjct: 7 GYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 65
Query: 296 HLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ 475
LF + ++G + G+ AD+RS AR EA+N++ +GY IP+ L R+A YT
Sbjct: 66 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTL 125
Query: 476 NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKK 652
+ +RP GC +L G Q+Y DP+G G+ A G + + + +EK K+
Sbjct: 126 YSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKE 184
>ref|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus].
Length = 241
Score = 115 bits (287), Expect = 8e-26
Identities = 63/233 (27%), Positives = 127/233 (54%), Gaps = 5/233 (2%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR + FSPEGRL+QVEYA +AI G T++ ++ + + +K++ L++ S++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSSIEK 66
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ- 475
+ +I +IGC M+G+ AD+++ + +AR E N + Y + V+ + + +++++ + +
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEE 126
Query: 476 ----NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKV 643
A RP G ++ G+D E+GPQ++ DP+G + A A G + S L++
Sbjct: 127 DADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVY 185
Query: 644 KKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEID 802
K T ++ +++++ L V+ + IE+ V F + T+ E++
Sbjct: 186 HKSM--TLKEAIKSSLIILKQVMEEKLNATNIELATVQ-PGQNFHMFTKEELE 235
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,554,860
Number of extensions: 874723
Number of successful extensions: 2405
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2388
Number of HSP's successfully gapped: 11
Length of query: 335
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,273,310
Effective search space: 3311407920
Effective search space used: 3311407920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013468
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013468
(1007 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_862262.1| PREDICTED: similar to Proteasome subunit alpha ... 494 e-140
Alignment gi|XP_537412.2| PREDICTED: similar to Proteasome subunit alpha ... 494 e-140
Alignment gi|XP_862190.1| PREDICTED: similar to Proteasome subunit alpha ... 487 e-138
Alignment gi|XP_862236.1| PREDICTED: similar to Proteasome subunit alpha ... 444 e-125
Alignment gi|XP_862135.1| PREDICTED: similar to Proteasome subunit alpha ... 376 e-104
Alignment gi|XP_862212.1| PREDICTED: similar to Proteasome subunit alpha ... 333 2e-91
Alignment gi|XP_862110.1| PREDICTED: similar to Proteasome subunit alpha ... 276 2e-74
Alignment gi|XP_533078.2| PREDICTED: similar to Proteasome subunit alpha ... 134 1e-31
Alignment gi|XP_532362.2| PREDICTED: similar to Proteasome subunit alpha ... 131 9e-31
Alignment gi|XP_547630.2| PREDICTED: similar to proteasome (prosome, macr... 128 1e-29
>ref|XP_862262.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 8 [Canis
familiaris].
Length = 246
Score = 494 bits (1272), Expect = e-140
Identities = 245/246 (99%), Positives = 246/246 (100%)
Frame = +2
Query: 95 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 274
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 275 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 454
LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 455 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 634
ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 635 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 814
KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRIL+EAEIDAHLV
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILSEAEIDAHLV 240
Query: 815 ALAERD 832
ALAERD
Sbjct: 241 ALAERD 246
>ref|XP_537412.2| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 2 [Canis
familiaris].
Length = 246
Score = 494 bits (1272), Expect = e-140
Identities = 245/246 (99%), Positives = 246/246 (100%)
Frame = +2
Query: 95 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 274
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 275 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 454
LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 455 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 634
ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 635 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 814
KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRIL+EAEIDAHLV
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILSEAEIDAHLV 240
Query: 815 ALAERD 832
ALAERD
Sbjct: 241 ALAERD 246
>ref|XP_862190.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 5 [Canis
familiaris].
Length = 246
Score = 487 bits (1254), Expect = e-138
Identities = 243/246 (98%), Positives = 244/246 (99%)
Frame = +2
Query: 95 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 274
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 275 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 454
LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 455 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 634
ISQVYTQNAEMRPL CMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
Sbjct: 121 ISQVYTQNAEMRPLELCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 635 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 814
KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRIL+EAEIDAHLV
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILSEAEIDAHLV 240
Query: 815 ALAERD 832
ALAERD
Sbjct: 241 ALAERD 246
>ref|XP_862236.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 7 [Canis
familiaris].
Length = 227
Score = 444 bits (1143), Expect = e-125
Identities = 220/221 (99%), Positives = 221/221 (100%)
Frame = +2
Query: 170 EYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTA 349
EYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTA
Sbjct: 7 EYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTA 66
Query: 350 DSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDE 529
DSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDE
Sbjct: 67 DSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDE 126
Query: 530 EQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTV 709
EQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTV
Sbjct: 127 EQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTV 186
Query: 710 LSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 832
LSIDFKPSEIEVGVVTVENPKFRIL+EAEIDAHLVALAERD
Sbjct: 187 LSIDFKPSEIEVGVVTVENPKFRILSEAEIDAHLVALAERD 227
>ref|XP_862135.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 4 [Canis
familiaris].
Length = 200
Score = 376 bits (965), Expect = e-104
Identities = 199/246 (80%), Positives = 200/246 (81%)
Frame = +2
Query: 95 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 274
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 275 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 454
LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 455 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 634
ISQVYTQNAEMRPLGCCMILIGIDEEQGPQ
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQ------------------------------ 150
Query: 635 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 814
TAITCLSTVLSIDFKPSEIEVGVVTVENPKFRIL+EAEIDAHLV
Sbjct: 151 ----------------TAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILSEAEIDAHLV 194
Query: 815 ALAERD 832
ALAERD
Sbjct: 195 ALAERD 200
>ref|XP_862212.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 6 [Canis
familiaris].
Length = 164
Score = 333 bits (853), Expect = 2e-91
Identities = 163/164 (99%), Positives = 164/164 (100%)
Frame = +2
Query: 341 MTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIG 520
MTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIG
Sbjct: 1 MTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIG 60
Query: 521 IDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCL 700
IDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCL
Sbjct: 61 IDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCL 120
Query: 701 STVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 832
STVLSIDFKPSEIEVGVVTVENPKFRIL+EAEIDAHLVALAERD
Sbjct: 121 STVLSIDFKPSEIEVGVVTVENPKFRILSEAEIDAHLVALAERD 164
>ref|XP_862110.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 3 [Canis
familiaris].
Length = 148
Score = 276 bits (707), Expect = 2e-74
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +2
Query: 95 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 274
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 275 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 454
LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 455 ISQVYTQNAEMRPLGC 502
ISQVYTQNAEMRPLGC
Sbjct: 121 ISQVYTQNAEMRPLGC 136
>ref|XP_533078.2| PREDICTED: similar to Proteasome subunit alpha type 2 (Proteasome
component C3) (Macropain subunit C3) (Multicatalytic
endopeptidase complex subunit C3) isoform 1 [Canis
familiaris].
Length = 234
Score = 134 bits (338), Expect = 1e-31
Identities = 84/236 (35%), Positives = 123/236 (52%)
Frame = +2
Query: 116 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 295
G+ +T FSP G+L Q+EYA A+ GG SV ++ + V+ T+KK L D +V
Sbjct: 5 GYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 63
Query: 296 HLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ 475
+ IT++IG V +GM D R V RAR A + Y IP L +R+A + Q YTQ
Sbjct: 64 KVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQ 123
Query: 476 NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKF 655
+ +RP G +++ G +E + P +++ DP+G Y +KATA G +FLEK+ +
Sbjct: 124 SGGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE-- 180
Query: 656 DWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALA 823
D E + TAI L IEVG+ FR LT E+ +L A+A
Sbjct: 181 DLELEDAIHTAILTLKESFEGQMTEDNIEVGI--CNEAGFRRLTPTEVKDYLAAIA 234
>ref|XP_532362.2| PREDICTED: similar to Proteasome subunit alpha type 4 (Proteasome
component C9) (Macropain subunit C9) (Multicatalytic
endopeptidase complex subunit C9) (Proteasome subunit L)
[Canis familiaris].
Length = 261
Score = 131 bits (330), Expect = 9e-31
Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 4/235 (1%)
Frame = +2
Query: 110 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST 289
S +D TIFSPEGRLYQVEYA +AI G T + + D ++ +++ KLLD
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 290 VTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQV 466
+ ++K+ E++ C + G+T+D+ R A + +Y IP + L + DI Q
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120
Query: 467 YTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 646
YTQ RP G ++ IG D+ G Q+Y+ DP+G Y G+KAT G + S L K+
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML-KQDY 179
Query: 647 KKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPK--FRILTEAEID 802
K+ + T + + AI L+ + + ++E+ +T EN K R+L + E++
Sbjct: 180 KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 234
>ref|XP_547630.2| PREDICTED: similar to proteasome (prosome, macropain) subunit,
alpha type, 8 isoform 2 [Canis familiaris].
Length = 222
Score = 128 bits (321), Expect = 1e-29
Identities = 73/217 (33%), Positives = 117/217 (53%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR IT+FSP+G L+QVEYA +A+ +G T+V +RG D V+ +KK KL D TV
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTDIVVLGVEKKSVAKLQDERTVRK 63
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 478
+ + +++ G+TAD+R + RAR E + K + V+ + + IA + Q YTQ+
Sbjct: 64 ICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQS 123
Query: 479 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 658
RP G +++G D++ P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 124 NGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAI 183
Query: 659 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENP 769
+ ++ AI L V+ K IE+ ++ P
Sbjct: 184 ANDNEAIKLAIRALLEVVQSGGK--NIELAIIRRNQP 218
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,933,895
Number of extensions: 893620
Number of successful extensions: 2506
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2470
Number of HSP's successfully gapped: 28
Length of query: 335
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 232
Effective length of database: 15,440,896
Effective search space: 3582287872
Effective search space used: 3582287872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013468
(1007 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001132944.1| proteasome subunit alpha type-6 [Sus scrofa]. 489 e-138
Alignment gi|NP_001230581.1| proteasome (prosome, macropain) subunit, alp... 132 3e-31
Alignment gi|XP_003127920.1| PREDICTED: proteasome subunit alpha type-7-l... 130 2e-30
Alignment gi|XP_001928025.1| PREDICTED: proteasome subunit alpha type-3 i... 117 1e-26
Alignment gi|NP_001138373.1| proteasome subunit alpha type-5 [Sus scrofa]. 115 5e-26
Alignment gi|XP_001928042.1| PREDICTED: proteasome subunit alpha type-3 i... 111 6e-25
Alignment gi|XP_003355315.1| PREDICTED: proteasome subunit alpha type-5-l... 105 3e-23
Alignment gi|XP_003123013.1| PREDICTED: proteasome subunit alpha type-1-l... 104 7e-23
Alignment gi|XP_003128492.2| PREDICTED: proteasome subunit alpha type-4 i... 99 5e-21
Alignment gi|XP_001926262.2| PREDICTED: proteasome subunit alpha type-4 i... 99 5e-21
>ref|NP_001132944.1| proteasome subunit alpha type-6 [Sus scrofa].
Length = 246
Score = 489 bits (1259), Expect = e-138
Identities = 243/246 (98%), Positives = 243/246 (98%)
Frame = +2
Query: 95 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 274
MSRGSSAG DRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
Sbjct: 1 MSRGSSAGVDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 275 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 454
LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 455 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 634
ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 635 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 814
KKVKKKFDWTFEQTVETAITCL TVLSIDFKPSEIEVGVVTVENPKFRI TEAEIDAHLV
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLFTVLSIDFKPSEIEVGVVTVENPKFRIFTEAEIDAHLV 240
Query: 815 ALAERD 832
ALAERD
Sbjct: 241 ALAERD 246
>ref|NP_001230581.1| proteasome (prosome, macropain) subunit, alpha type [Sus scrofa].
Length = 248
Score = 132 bits (332), Expect = 3e-31
Identities = 79/234 (33%), Positives = 127/234 (54%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR IT+FSP+G L+QVEYA +A+ +G T+V VRG+D V+ +KK +L D TV
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVARLQDERTVRK 61
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 478
+ + +N+ G+TAD+R + RAR E + + + V+ + + IA + Q YTQ+
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 479 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 658
RP G +++G D + P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 181
Query: 659 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 820
T T++ I L V+ K IE+ V+ + P +IL EI+ ++ +
Sbjct: 182 ETDGLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILNPEEIEKYVAEI 232
>ref|XP_003127920.1| PREDICTED: proteasome subunit alpha type-7-like isoform 1 [Sus
scrofa].
Length = 250
Score = 130 bits (326), Expect = 2e-30
Identities = 76/228 (33%), Positives = 124/228 (54%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR IT+FSP+G L+QVEYA +A+ +G T+VA+RG D V+ +KK KL D TV
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVAIRGTDIVVLGVEKKSVAKLQDERTVRK 63
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 478
+ + +++ G+TAD+R + RAR E + K + V+ + + IA + Q YTQ+
Sbjct: 64 ICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQS 123
Query: 479 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 658
RP G +++G D++ P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 124 NGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAI 183
Query: 659 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEID 802
+ ++ AI L V+ K IE+ ++ N ++ + EI+
Sbjct: 184 ANDNEAIKLAIRALLEVVQSGGK--NIELAIIR-RNQPLKMFSAKEIE 228
>ref|XP_001928025.1| PREDICTED: proteasome subunit alpha type-3 isoform 1 [Sus scrofa].
Length = 255
Score = 117 bits (293), Expect = 1e-26
Identities = 62/179 (34%), Positives = 97/179 (54%)
Frame = +2
Query: 116 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 295
G+D + FSP+GR++QVEYA KA+ T++ +R KD V +K V KL + +
Sbjct: 7 GYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 65
Query: 296 HLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ 475
LF + ++G + G+ AD+RS AR EA+N++ +GY IP+ L R+A YT
Sbjct: 66 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTL 125
Query: 476 NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKK 652
+ +RP GC +L G Q+Y DP+G G+ A G + + + +EK K+
Sbjct: 126 YSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKE 184
>ref|NP_001138373.1| proteasome subunit alpha type-5 [Sus scrofa].
Length = 241
Score = 115 bits (287), Expect = 5e-26
Identities = 63/233 (27%), Positives = 127/233 (54%), Gaps = 5/233 (2%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR + FSPEGRL+QVEYA +AI G T++ ++ + + +K++ L++ S++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSSIEK 66
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ- 475
+ +I +IGC M+G+ AD+++ + +AR E N + Y + V+ + + +++++ + +
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEE 126
Query: 476 ----NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKV 643
A RP G ++ G+D E+GPQ++ DP+G + A A G + S L++
Sbjct: 127 DADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVY 185
Query: 644 KKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEID 802
K T ++ +++++ L V+ + IE+ V F + T+ E++
Sbjct: 186 HKSM--TLKEAIKSSLIILKQVMEEKLNATNIELATVQ-PGQNFHMFTKEELE 235
>ref|XP_001928042.1| PREDICTED: proteasome subunit alpha type-3 isoform 2 [Sus scrofa].
Length = 248
Score = 111 bits (278), Expect = 6e-25
Identities = 61/179 (34%), Positives = 96/179 (53%)
Frame = +2
Query: 116 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 295
G+D + FSP+GR++QVEYA KA+ T++ +R KD V +K V KL + +
Sbjct: 7 GYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 65
Query: 296 HLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ 475
LF + ++G + G+ AD+RS AR EA+N++ +GY IP+ L R+A YT
Sbjct: 66 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTL 125
Query: 476 NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKK 652
+ +RP GC + G Q+Y DP+G G+ A G + + + +EK K+
Sbjct: 126 YSAVRPFGCSV-------NDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKE 177
>ref|XP_003355315.1| PREDICTED: proteasome subunit alpha type-5-like [Sus scrofa].
Length = 188
Score = 105 bits (263), Expect = 3e-23
Identities = 54/183 (29%), Positives = 105/183 (57%), Gaps = 5/183 (2%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR + FSPEGRL+QVEYA +AI G T++ ++ + + +K++ L++ S++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSSIEK 66
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ- 475
+ +I +IGC M+G+ AD+++ + +AR E N + Y + V+ + + +++++ + +
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEE 126
Query: 476 ----NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKV 643
A RP G ++ G+D E+GPQ++ DP+G + A A G + S L++
Sbjct: 127 DADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVY 185
Query: 644 KKK 652
K+
Sbjct: 186 HKR 188
>ref|XP_003123013.1| PREDICTED: proteasome subunit alpha type-1-like [Sus scrofa].
Length = 263
Score = 104 bits (260), Expect = 7e-23
Identities = 62/239 (25%), Positives = 122/239 (51%), Gaps = 2/239 (0%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+D +T++SP+GR++Q+EYA +A+ QG T V ++ K AV+V K+ +L ++
Sbjct: 6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSEL--AAHQKK 62
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 478
+ + +IG + G+TAD+R R E + ++ + +PV L I +Q+ TQ
Sbjct: 63 ILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQR 122
Query: 479 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 658
RP G +++ G D + GP +++ P+ Y +A + G + + ++LE+ + + +
Sbjct: 123 YGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181
Query: 659 WTFEQTVETAITCLSTVLSI--DFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAER 829
+ V+ + L L D + +G+V ++ +F I + ++ L L ER
Sbjct: 182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVG-KDLEFTIYDDDDVSPFLEGLEER 239
>ref|XP_003128492.2| PREDICTED: proteasome subunit alpha type-4 isoform 2 [Sus scrofa].
Length = 237
Score = 98.6 bits (244), Expect = 5e-21
Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 4/211 (1%)
Frame = +2
Query: 182 KAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH-LFKITENIGCVMTGMTADSR 358
+AI G T + + D ++ +++ KLLD + ++K+ E++ C + G+T+D+
Sbjct: 2 EAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDAN 60
Query: 359 SQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQG 538
R A + +Y IP + L + DI Q YTQ RP G ++ IG D+ G
Sbjct: 61 VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG 120
Query: 539 PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSI 718
Q+Y+ DP+G Y G+KAT G + S L K+ K+ + T + + AI L+ + +
Sbjct: 121 FQLYQSDPSGNYGGWKATCIGNNSAAAVSML-KQDYKEGEMTLKSALALAIKVLNKTMDV 179
Query: 719 D-FKPSEIEVGVVTVENPK--FRILTEAEID 802
++E+ +T EN K R+L + E++
Sbjct: 180 SKLSAEKVEIATLTRENGKTVIRVLKQKEVE 210
>ref|XP_001926262.2| PREDICTED: proteasome subunit alpha type-4 isoform 1 [Sus scrofa].
Length = 237
Score = 98.6 bits (244), Expect = 5e-21
Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 4/211 (1%)
Frame = +2
Query: 182 KAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH-LFKITENIGCVMTGMTADSR 358
+AI G T + + D ++ +++ KLLD + ++K+ E++ C + G+T+D+
Sbjct: 2 EAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDAN 60
Query: 359 SQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQG 538
R A + +Y IP + L + DI Q YTQ RP G ++ IG D+ G
Sbjct: 61 VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG 120
Query: 539 PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSI 718
Q+Y+ DP+G Y G+KAT G + S L K+ K+ + T + + AI L+ + +
Sbjct: 121 FQLYQSDPSGNYGGWKATCIGNNSAAAVSML-KQDYKEGEMTLKSALALAIKVLNKTMDV 179
Query: 719 D-FKPSEIEVGVVTVENPK--FRILTEAEID 802
++E+ +T EN K R+L + E++
Sbjct: 180 SKLSAEKVEIATLTRENGKTVIRVLKQKEVE 210
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,815,226
Number of extensions: 557820
Number of successful extensions: 1479
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 1464
Number of HSP's successfully gapped: 14
Length of query: 335
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,879,129
Effective search space: 2095474444
Effective search space used: 2095474444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013468
(1007 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036098.1| proteasome subunit alpha type-6 [Mus musculus]. 494 e-140
Alignment gi|NP_036099.1| proteasome subunit alpha type-7 [Mus musculus]. 135 5e-32
Alignment gi|NP_032970.2| proteasome subunit alpha type-2 [Mus musculus]. 134 1e-31
Alignment gi|NP_036096.1| proteasome subunit alpha type-4 [Mus musculus]. 129 4e-30
Alignment gi|NP_001157081.1| proteasome subunit alpha type-7-like [Mus mu... 127 1e-29
Alignment gi|NP_035314.3| proteasome subunit alpha type-3 [Mus musculus]. 117 1e-26
Alignment gi|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus]. 115 7e-26
Alignment gi|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-l... 111 8e-25
Alignment gi|NP_036095.1| proteasome subunit alpha type-1 [Mus musculus]. 105 7e-23
>ref|NP_036098.1| proteasome subunit alpha type-6 [Mus musculus].
Length = 246
Score = 494 bits (1271), Expect = e-140
Identities = 245/246 (99%), Positives = 246/246 (100%)
Frame = +2
Query: 95 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 274
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 275 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 454
LDSSTVTHLFKITE+IGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
Sbjct: 61 LDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 455 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 634
ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 635 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 814
KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 240
Query: 815 ALAERD 832
ALAERD
Sbjct: 241 ALAERD 246
>ref|NP_036099.1| proteasome subunit alpha type-7 [Mus musculus].
Length = 248
Score = 135 bits (340), Expect = 5e-32
Identities = 81/234 (34%), Positives = 127/234 (54%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR IT+FSP+G L+QVEYA +A+ +G T+V VRGKD V+ +KK KL D TV
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGKDIVVLGVEKKSVAKLQDERTVRK 61
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 478
+ + +N+ G+TAD+R + RAR E + + + V+ + + IA + Q YTQ+
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 479 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 658
RP G +++G D + P++Y+ DP+G Y +KA A G FLEK
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAI 181
Query: 659 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 820
T + T++ I L V+ K IE+ V+ + P +IL EI+ ++ +
Sbjct: 182 ETDDLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILNPEEIEKYVAEI 232
>ref|NP_032970.2| proteasome subunit alpha type-2 [Mus musculus].
Length = 234
Score = 134 bits (337), Expect = 1e-31
Identities = 84/236 (35%), Positives = 123/236 (52%)
Frame = +2
Query: 116 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 295
G+ +T FSP G+L Q+EYA A+ GG SV ++ + V+ T+KK L D +V
Sbjct: 5 GYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 63
Query: 296 HLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ 475
+ IT++IG V +GM D R V RAR A + Y IP L +R+A + Q YTQ
Sbjct: 64 KVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQ 123
Query: 476 NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKF 655
+ +RP G +++ G +E + P +++ DP+G Y +KATA G +FLEK+ +
Sbjct: 124 SGGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE-- 180
Query: 656 DWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALA 823
D E + TAI L IEVG+ FR LT E+ +L A+A
Sbjct: 181 DLELEDAIHTAILTLKESFEGQMTEDNIEVGI--CNEAGFRRLTPTEVRDYLAAIA 234
>ref|NP_036096.1| proteasome subunit alpha type-4 [Mus musculus].
Length = 261
Score = 129 bits (324), Expect = 4e-30
Identities = 76/235 (32%), Positives = 125/235 (53%), Gaps = 4/235 (1%)
Frame = +2
Query: 110 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST 289
S +D TIFSPEGRLYQVEYA +AI G T + + D ++ +++ KLLD
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 290 VTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQV 466
+ ++K+ E++ C + G+T+D+ R A + +Y IP + L + DI Q
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120
Query: 467 YTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 646
YTQ RP G ++ IG D+ G Q+Y+ DP+G Y G+KAT G + S L K+
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML-KQDY 179
Query: 647 KKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPK--FRILTEAEID 802
K+ + T + + A+ L+ + + ++E+ +T E+ K R+L + E++
Sbjct: 180 KEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLTRESGKTVIRVLKQKEVE 234
>ref|NP_001157081.1| proteasome subunit alpha type-7-like [Mus musculus].
Length = 250
Score = 127 bits (320), Expect = 1e-29
Identities = 74/228 (32%), Positives = 125/228 (54%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR IT+FSP+G L+QVEYA +A+ +G T+V +RG + V+ +KK KL D TV
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKLQDERTVRK 63
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 478
+ + +++ G+TAD+R + RAR E + K + V+ + + IA + Q YTQ+
Sbjct: 64 ICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQS 123
Query: 479 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 658
RP G +++G D++ P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 124 NGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAI 183
Query: 659 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEID 802
++ ++ AI L V+ K IE+ ++ + P ++ + EI+
Sbjct: 184 SNDKEAIKLAIKALLEVVQSGGK--NIELAIIRRDQP-LKMFSAKEIE 228
>ref|NP_035314.3| proteasome subunit alpha type-3 [Mus musculus].
Length = 255
Score = 117 bits (294), Expect = 1e-26
Identities = 62/179 (34%), Positives = 97/179 (54%)
Frame = +2
Query: 116 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 295
G+D + FSP+GR++QVEYA KA+ T++ +R KD V +K V KL + +
Sbjct: 7 GYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 65
Query: 296 HLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ 475
LF + ++G + G+ AD+RS AR EA+N++ +GY IP+ L R+A YT
Sbjct: 66 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTL 125
Query: 476 NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKK 652
+ +RP GC +L G Q+Y DP+G G+ A G + + + +EK K+
Sbjct: 126 YSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKE 184
>ref|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus].
Length = 241
Score = 115 bits (287), Expect = 7e-26
Identities = 63/233 (27%), Positives = 127/233 (54%), Gaps = 5/233 (2%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR + FSPEGRL+QVEYA +AI G T++ ++ + + +K++ L++ S++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSSIEK 66
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ- 475
+ +I +IGC M+G+ AD+++ + +AR E N + Y + V+ + + +++++ + +
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEE 126
Query: 476 ----NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKV 643
A RP G ++ G+D E+GPQ++ DP+G + A A G + S L++
Sbjct: 127 DADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVY 185
Query: 644 KKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEID 802
K T ++ +++++ L V+ + IE+ V F + T+ E++
Sbjct: 186 HKSM--TLKEAIKSSLIILKQVMEEKLNATNIELATVQ-PGQNFHMFTKEELE 235
>ref|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-like [Mus musculus].
Length = 241
Score = 111 bits (278), Expect = 8e-25
Identities = 61/233 (26%), Positives = 126/233 (54%), Gaps = 5/233 (2%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
++R + FSPEGRL+QVEYA +AI G T++ ++ + + +K++ L++ S++
Sbjct: 8 YNRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSSIEK 66
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ- 475
+ +I +IGC M+G+ AD+++ + +AR E N + Y + V+ + + +++++ + +
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEE 126
Query: 476 ----NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKV 643
A RP G ++ G+D E+GPQ++ DP+G + A A G + S L++
Sbjct: 127 DADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVY 185
Query: 644 KKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEID 802
K T ++ +++++ V+ + IE+ V F + T+ E++
Sbjct: 186 HKSM--TLKEAIKSSLIIFKQVMEEKLNTTNIELATVQ-PGQNFHMFTKEELE 235
>ref|NP_036095.1| proteasome subunit alpha type-1 [Mus musculus].
Length = 263
Score = 105 bits (261), Expect = 7e-23
Identities = 62/239 (25%), Positives = 123/239 (51%), Gaps = 2/239 (0%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+D +T++SP+GR++Q+EYA +A+ QG T V ++ K AV+V K+ +L ++
Sbjct: 6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSEL--AAHQKK 62
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 478
+ + +IG + G+TAD+R R E + ++ + +PV L I +Q+ TQ
Sbjct: 63 ILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQR 122
Query: 479 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 658
RP G +++ G D + GP +++ P+ Y +A + G + + ++LE+ + + +
Sbjct: 123 YGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181
Query: 659 WTFEQTVETAITCLSTVLSI--DFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAER 829
++ V+ + L L D + +G+V ++ +F I + ++ L L ER
Sbjct: 182 CNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVG-KDLEFTIYDDDDVSPFLDGLEER 239
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,251,563
Number of extensions: 768271
Number of successful extensions: 2032
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2017
Number of HSP's successfully gapped: 9
Length of query: 335
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 233
Effective length of database: 12,553,887
Effective search space: 2925055671
Effective search space used: 2925055671
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013468
(1007 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002782.1| proteasome subunit alpha type-6 [Homo sapiens]. 496 e-140
Alignment gi|NP_002778.1| proteasome subunit alpha type-2 [Homo sapiens]. 134 1e-31
Alignment gi|NP_002783.1| proteasome subunit alpha type-7 [Homo sapiens]. 132 4e-31
Alignment gi|NP_001096137.1| proteasome subunit alpha type-4 isoform 1 [H... 131 9e-31
Alignment gi|NP_002780.1| proteasome subunit alpha type-4 isoform 1 [Homo... 131 9e-31
Alignment gi|NP_001020267.1| proteasome subunit alpha type-7-like isoform... 124 1e-28
Alignment gi|NP_653263.2| proteasome subunit alpha type-7-like isoform 1 ... 119 6e-27
Alignment gi|NP_002779.1| proteasome subunit alpha type-3 isoform 1 [Homo... 117 2e-26
Alignment gi|NP_002781.2| proteasome subunit alpha type-5 isoform 1 [Homo... 115 8e-26
Alignment gi|NP_687033.1| proteasome subunit alpha type-3 isoform 2 [Homo... 111 9e-25
>ref|NP_002782.1| proteasome subunit alpha type-6 [Homo sapiens].
Length = 246
Score = 496 bits (1276), Expect = e-140
Identities = 246/246 (100%), Positives = 246/246 (100%)
Frame = +2
Query: 95 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 274
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 275 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 454
LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 455 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 634
ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 635 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 814
KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 240
Query: 815 ALAERD 832
ALAERD
Sbjct: 241 ALAERD 246
>ref|NP_002778.1| proteasome subunit alpha type-2 [Homo sapiens].
Length = 234
Score = 134 bits (338), Expect = 1e-31
Identities = 84/236 (35%), Positives = 123/236 (52%)
Frame = +2
Query: 116 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 295
G+ +T FSP G+L Q+EYA A+ GG SV ++ + V+ T+KK L D +V
Sbjct: 5 GYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 63
Query: 296 HLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ 475
+ IT++IG V +GM D R V RAR A + Y IP L +R+A + Q YTQ
Sbjct: 64 KVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQ 123
Query: 476 NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKF 655
+ +RP G +++ G +E + P +++ DP+G Y +KATA G +FLEK+ +
Sbjct: 124 SGGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE-- 180
Query: 656 DWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALA 823
D E + TAI L IEVG+ FR LT E+ +L A+A
Sbjct: 181 DLELEDAIHTAILTLKESFEGQMTEDNIEVGI--CNEAGFRRLTPTEVKDYLAAIA 234
>ref|NP_002783.1| proteasome subunit alpha type-7 [Homo sapiens].
Length = 248
Score = 132 bits (333), Expect = 4e-31
Identities = 78/234 (33%), Positives = 125/234 (53%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR IT+FSP+G L+QVEYA +A+ +G T+V VRG+D V+ +KK KL D TV
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVRK 61
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 478
+ + +N+ G+TAD+R + RAR E + + + V+ + + IA + Q YTQ+
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 479 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 658
RP G +++G D + P++Y+ DP+G Y +KA A G FLEK +
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 181
Query: 659 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 820
T + T++ I L V+ K E+ V + +IL EI+ ++ +
Sbjct: 182 ETDDLTIKLVIKALLEVVQSGGKNIEL---AVMRRDQSLKILNPEEIEKYVAEI 232
>ref|NP_001096137.1| proteasome subunit alpha type-4 isoform 1 [Homo sapiens].
Length = 261
Score = 131 bits (330), Expect = 9e-31
Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 4/235 (1%)
Frame = +2
Query: 110 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST 289
S +D TIFSPEGRLYQVEYA +AI G T + + D ++ +++ KLLD
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 290 VTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQV 466
+ ++K+ E++ C + G+T+D+ R A + +Y IP + L + DI Q
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120
Query: 467 YTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 646
YTQ RP G ++ IG D+ G Q+Y+ DP+G Y G+KAT G + S L K+
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML-KQDY 179
Query: 647 KKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPK--FRILTEAEID 802
K+ + T + + AI L+ + + ++E+ +T EN K R+L + E++
Sbjct: 180 KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 234
>ref|NP_002780.1| proteasome subunit alpha type-4 isoform 1 [Homo sapiens].
Length = 261
Score = 131 bits (330), Expect = 9e-31
Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 4/235 (1%)
Frame = +2
Query: 110 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST 289
S +D TIFSPEGRLYQVEYA +AI G T + + D ++ +++ KLLD
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 290 VTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQV 466
+ ++K+ E++ C + G+T+D+ R A + +Y IP + L + DI Q
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120
Query: 467 YTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 646
YTQ RP G ++ IG D+ G Q+Y+ DP+G Y G+KAT G + S L K+
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML-KQDY 179
Query: 647 KKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPK--FRILTEAEID 802
K+ + T + + AI L+ + + ++E+ +T EN K R+L + E++
Sbjct: 180 KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 234
>ref|NP_001020267.1| proteasome subunit alpha type-7-like isoform 2 [Homo sapiens].
Length = 250
Score = 124 bits (312), Expect = 1e-28
Identities = 72/234 (30%), Positives = 126/234 (53%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR IT+FSP+G L+QVEYA +A+ +G T+V +RG + V+ +KK KL D TV
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKLQDERTVRK 63
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 478
+ + +++ G+TAD+R + RAR E + K + V+ + + IA + Q YTQ+
Sbjct: 64 ICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQS 123
Query: 479 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 658
RP G +++G D++ ++Y+ DP+G Y +KA A G FLEK +
Sbjct: 124 NGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAI 183
Query: 659 WTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 820
+ + ++ AI L V+ K IE+ ++ N ++ + E++ ++ +
Sbjct: 184 ASDSEAIKLAIKALLEVVQSGGK--NIELAIIR-RNQPLKMFSAKEVELYVTEI 234
>ref|NP_653263.2| proteasome subunit alpha type-7-like isoform 1 [Homo sapiens].
Length = 256
Score = 119 bits (297), Expect = 6e-27
Identities = 72/240 (30%), Positives = 127/240 (52%), Gaps = 6/240 (2%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR IT+FSP+G L+QVEYA +A+ +G T+V +RG + V+ +KK KL D TV
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKLQDERTVRK 63
Query: 299 LFKITENIGC------VMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADIS 460
+ + +++ + G+TAD+R + RAR E + K + V+ + + IA +
Sbjct: 64 ICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLK 123
Query: 461 QVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKK 640
Q YTQ+ RP G +++G D++ ++Y+ DP+G Y +KA A G FLEK
Sbjct: 124 QKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKN 183
Query: 641 VKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 820
+ + + ++ AI L V+ K IE+ ++ N ++ + E++ ++ +
Sbjct: 184 YTEDAIASDSEAIKLAIKALLEVVQSGGK--NIELAIIR-RNQPLKMFSAKEVELYVTEI 240
>ref|NP_002779.1| proteasome subunit alpha type-3 isoform 1 [Homo sapiens].
Length = 255
Score = 117 bits (293), Expect = 2e-26
Identities = 62/179 (34%), Positives = 97/179 (54%)
Frame = +2
Query: 116 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 295
G+D + FSP+GR++QVEYA KA+ T++ +R KD V +K V KL + +
Sbjct: 7 GYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 65
Query: 296 HLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ 475
LF + ++G + G+ AD+RS AR EA+N++ +GY IP+ L R+A YT
Sbjct: 66 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTL 125
Query: 476 NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKK 652
+ +RP GC +L G Q+Y DP+G G+ A G + + + +EK K+
Sbjct: 126 YSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKE 184
>ref|NP_002781.2| proteasome subunit alpha type-5 isoform 1 [Homo sapiens].
Length = 241
Score = 115 bits (287), Expect = 8e-26
Identities = 63/233 (27%), Positives = 127/233 (54%), Gaps = 5/233 (2%)
Frame = +2
Query: 119 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 298
+DR + FSPEGRL+QVEYA +AI G T++ ++ + + +K++ L++ S++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSSIEK 66
Query: 299 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ- 475
+ +I +IGC M+G+ AD+++ + +AR E N + Y + V+ + + +++++ + +
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEE 126
Query: 476 ----NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKV 643
A RP G ++ G+D E+GPQ++ DP+G + A A G + S L++
Sbjct: 127 DADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVY 185
Query: 644 KKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEID 802
K T ++ +++++ L V+ + IE+ V F + T+ E++
Sbjct: 186 HKSM--TLKEAIKSSLIILKQVMEEKLNATNIELATVQ-PGQNFHMFTKEELE 235
>ref|NP_687033.1| proteasome subunit alpha type-3 isoform 2 [Homo sapiens].
Length = 248
Score = 111 bits (278), Expect = 9e-25
Identities = 61/179 (34%), Positives = 96/179 (53%)
Frame = +2
Query: 116 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 295
G+D + FSP+GR++QVEYA KA+ T++ +R KD V +K V KL + +
Sbjct: 7 GYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 65
Query: 296 HLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQ 475
LF + ++G + G+ AD+RS AR EA+N++ +GY IP+ L R+A YT
Sbjct: 66 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTL 125
Query: 476 NAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKK 652
+ +RP GC + G Q+Y DP+G G+ A G + + + +EK K+
Sbjct: 126 YSAVRPFGCSV-------NDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKE 177
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,417,527
Number of extensions: 889420
Number of successful extensions: 2337
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 2316
Number of HSP's successfully gapped: 18
Length of query: 335
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,901,872
Effective search space: 3457234304
Effective search space used: 3457234304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013468
(1007 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 420 e-115
Sscrofa_Chr13 266 2e-68
Sscrofa_Chr17 109 3e-21
gb|GL893448.2| Sus scrofa unplaced genomic scaffold ChrUScaf1333 92 7e-16
Sscrofa_Chr01 92 7e-16
>Sscrofa_Chr07
|| Length = 134764511
Score = 420 bits (212), Expect = e-115
Identities = 219/220 (99%), Gaps = 1/220 (0%)
Strand = Plus / Minus
Query: 776 aggattcttacagaagcagagattgacgctcaccttgttgctctagcagagagagactaa 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69488040 aggattcttacagaagcagagattgacgctcaccttgttgctctagcagagagagactaa 69487981
Query: 836 acgttgtagctagtttaccaaatccatgacgccacttatctgtgtgtttggtaacaacag 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69487980 acgttgtagctagtttaccaaatccatgacgccacttatctgtgtgtttggtaacaacag 69487921
Query: 896 accaacctatggaggcccctggattgaaaaaggaacctttcccactcctcctgccactga 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69487920 accaacctatggaggcccctggattgaaaaaggaacctttcccactcctcctgccactga 69487861
Query: 956 agtggttaggactctgtat-aataaacacagtgcttttgg 994
||||||||||||||||||| ||||||||||||||||||||
Sbjct: 69487860 agtggttaggactctgtataaataaacacagtgcttttgg 69487821
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 5 agcggtcgctgtaacttcctgagaggcttgtacgcctggtgcgggagctacgggacatcg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69512918 agcggtcgctgtaacttcctgagaggcttgtacgcctggtgcgggagctacgggacatcg 69512859
Query: 65 agactgtgcttggagtagtggttcaccaccatgtcccgtggttccagcgctggttttgac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69512858 agactgtgcttggagtagtggttcaccaccatgtcccgtggttccagcgctggttttgac 69512799
Query: 125 cgtcacattaccattttttcccccgagggccggctgtaccaagtag 170
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69512798 cgtcacattaccattttttcccccgagggccggctgtaccaagtag 69512753
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 346 agctgacagcagatcccaggtacagagggcacgttatgaggcagctaattggaaatacaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69493949 agctgacagcagatcccaggtacagagggcacgttatgaggcagctaattggaaatacaa 69493890
Query: 406 gtatggttatgagattcctgtggacatgctgtgtaaaaggattgctgatatttctcaggt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69493889 gtatggttatgagattcctgtggacatgctgtgtaaaaggattgctgatatttctcaggt 69493830
Query: 466 ctacacacagaatgctgaaatgaggcctcttggttgttgta 506
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 69493829 ctacacacagaatgctgaaatgaggcctcttggttgttgta 69493789
Score = 307 bits (155), Expect = 6e-81
Identities = 171/179 (95%)
Strand = Plus / Minus
Query: 504 gtatgattttaattggcatagatgaagaacaaggccctcaggtgtataagtgtgatcccg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69492481 gtatgattttaattggcatagatgaagaacaaggccctcaggtgtataagtgtgatcccg 69492422
Query: 564 caggttactactgtgggtttaaagccactgcagcaggagttaaacaaaccgagtcaacca 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69492421 caggttactactgtgggtttaaagccactgcagcaggagttaaacaaaccgagtcaacca 69492362
Query: 624 gcttccttgnnnnnnnngtgaagaagaaatttgattggacatttgaacagacagtggaa 682
||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69492361 gcttccttgaaaaaaaagtgaagaagaaatttgattggacatttgaacagacagtggaa 69492303
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 169 agaatatgcttttaaggcaattaaccagggtggccttacatcagtagccgtcagagggaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69496354 agaatatgcttttaaggcaattaaccagggtggccttacatcagtagccgtcagagggaa 69496295
Query: 229 agactgtgcagtaattgtcacacagaagaaagtacctg 266
||||||||||||||||||||||||||||||||||||||
Sbjct: 69496294 agactgtgcagtaattgtcacacagaagaaagtacctg 69496257
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 683 actgcaattacatgcctgtctactgttctatcaattgatttcaagccttcagaaatagaa 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69490721 actgcaattacatgcctgtctactgttctatcaattgatttcaagccttcagaaatagaa 69490662
Query: 743 gttggagtggttacagttgaaaatcctaaattcagg 778
||||||||||||||||||||||||||||||||||||
Sbjct: 69490661 gttggagtggttacagttgaaaatcctaaattcagg 69490626
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 266 gacaaattactggattccagcacagtgactcacttattcaagataactgaaaacatcggc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69495772 gacaaattactggattccagcacagtgactcacttattcaagataactgaaaacatcggc 69495713
Query: 326 tgtgtgatgacaggaatgacag 347
||||||||||||||||||||||
Sbjct: 69495712 tgtgtgatgacaggaatgacag 69495691
>Sscrofa_Chr13
|| Length = 218635234
Score = 266 bits (134), Expect = 2e-68
Identities = 222/250 (88%), Gaps = 1/250 (0%)
Strand = Plus / Plus
Query: 728 ccttcagaaatagaagttggagtggttacagttgaaaatcctaaattcaggattcttaca 787
||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||
Sbjct: 185290993 ccttcagaaatagaagttgaagtagttaccactgaaaatcctaaattaaggattcttaca 185291052
Query: 788 gaagcagagattgacgctcaccttgttgctctagcagagagagactaaacgttgtagcta 847
||||| |||||||| |||||||||| |||||||| |||||| |||||||| |||||| ||
Sbjct: 185291053 gaagcggagattgatgctcaccttgctgctctagaagagagtgactaaacattgtaggta 185291112
Query: 848 gtttaccaaatccatgacgccacttatctgtgtgtttggtaacaacagaccaacc-tatg 906
||||||||||| || || ||||||| || |||||||| |||||||||||||||| ||||
Sbjct: 185291113 gtttaccaaatacaagatgccacttgcctctgtgtttgctaacaacagaccaaccttatg 185291172
Query: 907 gaggcccctggattgaaaaaggaacctttcccactcctcctgccactgaagtggttagga 966
||| |||| ||||||||| |||||||| ||||||||||||| ||||||||||||||| ||
Sbjct: 185291173 gagtccccaggattgaaagaggaacctctcccactcctcctaccactgaagtggttatga 185291232
Query: 967 ctctgtataa 976
||||| ||||
Sbjct: 185291233 ctctgcataa 185291242
>Sscrofa_Chr17
|| Length = 69701581
Score = 109 bits (55), Expect = 3e-21
Identities = 114/132 (86%), Gaps = 5/132 (3%)
Strand = Plus / Minus
Query: 501 gttgtatgattttaattggcatagatgaagaacaaggccctcaggtgtataagtgtgatc 560
|||| ||| |||||||||| ||||||||||| || ||| ||||||| || |||||||||
Sbjct: 31344616 gttggatggttttaattggtatagatgaagagca-ggctctcaggtataccagtgtgatc 31344558
Query: 561 ccgcaggttactactgtgggtttaaagccactgcagcaggagttaaacaaaccgagtcaa 620
| ||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 31344557 ctgcaagttcctacggtgggtttaaagccactgcagcaggagtt----aaaccaagtcaa 31344502
Query: 621 ccagcttccttg 632
||||||||||||
Sbjct: 31344501 ccagcttccttg 31344490
Score = 109 bits (55), Expect = 3e-21
Identities = 114/132 (86%), Gaps = 5/132 (3%)
Strand = Plus / Plus
Query: 501 gttgtatgattttaattggcatagatgaagaacaaggccctcaggtgtataagtgtgatc 560
|||| ||| |||||||||| ||||||||||| || ||| ||||||| || |||||||||
Sbjct: 31679150 gttggatggttttaattggtatagatgaagagca-ggctctcaggtataccagtgtgatc 31679208
Query: 561 ccgcaggttactactgtgggtttaaagccactgcagcaggagttaaacaaaccgagtcaa 620
| ||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 31679209 ctgcaagttcctacggtgggtttaaagccactgcagcaggagtt----aaaccaagtcaa 31679264
Query: 621 ccagcttccttg 632
||||||||||||
Sbjct: 31679265 ccagcttccttg 31679276
Score = 71.9 bits (36), Expect = 6e-10
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 742 agttggagtggttacagttgaaaatcctaaattcaggattcttacagaagcagagattga 801
||||| ||| || |||| ||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 31344006 agttgtagtagtgacagctgaaaatcccaaactcaggattcttacagaagcagagattga 31343947
Score = 71.9 bits (36), Expect = 6e-10
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 742 agttggagtggttacagttgaaaatcctaaattcaggattcttacagaagcagagattga 801
||||| ||| || |||| ||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 31679772 agttgtagtagtgacagctgaaaatcccaaactcaggattcttacagaagcagagattga 31679831
Score = 63.9 bits (32), Expect = 2e-07
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 470 acacagaatgctgaaatgaggcctcttggttgttgtatgatttt 513
|||||| ||||||||||||||||||||| ||| |||||||||||
Sbjct: 31344997 acacaggatgctgaaatgaggcctcttgattgctgtatgatttt 31344954
Score = 63.9 bits (32), Expect = 2e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 470 acacagaatgctgaaatgaggcctcttggttgttgtatgatttt 513
|||||| ||||||||||||||||||||| ||| |||||||||||
Sbjct: 31678769 acacaggatgctgaaatgaggcctcttgattgctgtatgatttt 31678812
>gb|GL893448.2| Sus scrofa unplaced genomic scaffold ChrUScaf1333
Length = 28870
Score = 91.7 bits (46), Expect = 7e-16
Identities = 153/186 (82%), Gaps = 2/186 (1%)
Strand = Plus / Plus
Query: 653 tttgattggacatttgaacagacagtggaaactgcaattacatgcctgtctactgttcta 712
|||||||||||||||||||||| |||||||| | | | |||||| || ||| |||
Sbjct: 24822 tttgattggacatttgaacagatgatggaaactacgaatgcatgcccagctcctggtctg 24881
Query: 713 tcaattgatttcaagccttcagaaata-gaagttggagtggttacagttgaaaatcctaa 771
||| |||| ||||| |||| ||||| | |||| ||||| || |||||| | ||||||||
Sbjct: 24882 tcagttgacttcaaacctttagaaagaagaagctggagcagtgacagttaagaatcctaa 24941
Query: 772 attcaggattcttacagaagcagagattgacgctcaccttgttgctctagcagagagaga 831
| ||||||| |||||||||||| |||||||| |||||||||| ||| |||||||| |||
Sbjct: 24942 actcaggatcattacagaagcagggattgacg-tcaccttgttactccagcagagaaaga 25000
Query: 832 ctaaac 837
||||||
Sbjct: 25001 ctaaac 25006
>Sscrofa_Chr01
|| Length = 315321322
Score = 91.7 bits (46), Expect = 7e-16
Identities = 153/186 (82%), Gaps = 2/186 (1%)
Strand = Plus / Minus
Query: 653 tttgattggacatttgaacagacagtggaaactgcaattacatgcctgtctactgttcta 712
|||||||||||||||||||||| |||||||| | | | |||||| || ||| |||
Sbjct: 179794533 tttgattggacatttgaacagatgatggaaactacgaatgcatgcccagctcctggtctg 179794474
Query: 713 tcaattgatttcaagccttcagaaata-gaagttggagtggttacagttgaaaatcctaa 771
||| |||| ||||| |||| ||||| | |||| ||||| || |||||| | ||||||||
Sbjct: 179794473 tcagttgacttcaaacctttagaaagaagaagctggagcagtgacagttaagaatcctaa 179794414
Query: 772 attcaggattcttacagaagcagagattgacgctcaccttgttgctctagcagagagaga 831
| ||||||| |||||||||||| |||||||| |||||||||| ||| |||||||| |||
Sbjct: 179794413 actcaggatcattacagaagcagggattgacg-tcaccttgttactccagcagagaaaga 179794355
Query: 832 ctaaac 837
||||||
Sbjct: 179794354 ctaaac 179794349
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,973,089
Number of extensions: 197
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 17
Length of query: 1007
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 986
Effective length of database: 2,808,413,156
Effective search space: 2769095371816
Effective search space used: 2769095371816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)