Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013471
(1504 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538806.2| PREDICTED: similar to regulator of G-protein si... 357 1e-98
Alignment gi|XP_547431.2| PREDICTED: similar to Regulator of G-protein si... 160 4e-39
Alignment gi|XP_545783.2| PREDICTED: similar to Regulator of G-protein si... 158 1e-38
Alignment gi|XP_849550.1| PREDICTED: similar to regulator of G-protein si... 157 2e-38
Alignment gi|XP_859033.1| PREDICTED: similar to Regulator of G-protein si... 156 4e-38
Alignment gi|XP_545701.2| PREDICTED: similar to regulator of G-protein si... 155 7e-38
Alignment gi|XP_545784.2| PREDICTED: similar to Regulator of G-protein si... 145 8e-35
Alignment gi|XP_849782.1| PREDICTED: similar to Regulator of G-protein si... 136 6e-32
Alignment gi|XP_859759.1| PREDICTED: similar to Regulator of G-protein si... 135 1e-31
Alignment gi|XP_545702.2| PREDICTED: similar to Regulator of G-protein si... 126 5e-29
>ref|XP_538806.2| PREDICTED: similar to regulator of G-protein signalling 3 isoform 6
[Canis familiaris].
Length = 501
Score = 357 bits (917), Expect = 1e-98
Identities = 186/238 (78%), Positives = 192/238 (80%)
Frame = +2
Query: 2 NRLGAQRASTRLQPELLPPGTRGGRQEPRGCSQRTDPGSKVGGPTAMLRGMYLTRNGNLQ 181
+R GAQ A+ E GG EP G + GP MLRGMYLTRNGNLQ
Sbjct: 273 SRPGAQSAAGIPASERCTVVPAGGEPEPWGPRR---------GPAEMLRGMYLTRNGNLQ 323
Query: 182 RRHTMKEAKDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEKLLVH 361
RRHTMKEAKDMKNKLGIFRRRNESPGAQPAGK DK++KSFKPTSEEALKWGESLEKLL+H
Sbjct: 324 RRHTMKEAKDMKNKLGIFRRRNESPGAQPAGKADKMVKSFKPTSEEALKWGESLEKLLLH 383
Query: 362 KYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNL 541
KYGLAVFQAFLRTEFSEENLEFWLACEDF IFAEYIAIQACKEVNL
Sbjct: 384 KYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEYIAIQACKEVNL 443
Query: 542 DSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 715
DSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL
Sbjct: 444 DSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 501
>ref|XP_547431.2| PREDICTED: similar to Regulator of G-protein signaling 8 (RGS8)
isoform 1 [Canis familiaris].
Length = 327
Score = 160 bits (404), Expect = 4e-39
Identities = 83/181 (45%), Positives = 112/181 (61%), Gaps = 1/181 (0%)
Frame = +2
Query: 206 KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTS-EEALKWGESLEKLLVHKYGLAVF 382
K M+ +LG +++S A DK ++ K S EEA +W +S + LL HKYG+A F
Sbjct: 11 KGMRTRLGCLSHKSDSCSDFTAILPDKPNRALKRLSTEEATRWADSFDVLLSHKYGVAAF 70
Query: 383 QAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSYTREH 562
+AFL+TEFSEENLEFWLACE+F IF E++ +QA +EVN+D TRE
Sbjct: 71 RAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDFQTREA 130
Query: 563 TKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL*GPRGWSSA 742
T+ N+Q + CFD AQ ++ LMEKDSYPRFLRS +YLDL++Q + GW +
Sbjct: 131 TRKNMQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLSQSQRRLSFEDVLGWKES 190
Query: 743 F 745
F
Sbjct: 191 F 191
Score = 134 bits (337), Expect = 2e-31
Identities = 70/127 (55%), Positives = 83/127 (65%)
Frame = +2
Query: 314 EEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXX 493
E+ L W ES + LL K G+A F AFL+TEFSEENLEFWLACE+F
Sbjct: 182 EDVLGWKESFDSLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKLRSAAKLASRAHK 241
Query: 494 IFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDL 673
IF E+I +A KEVN+D TRE T+ NLQ+ T CFD+AQ +I LMEKDSYPRFL+S
Sbjct: 242 IFEEFIRSEAPKEVNIDHETRELTEKNLQAATATCFDVAQGKIRTLMEKDSYPRFLKSPA 301
Query: 674 YLDLINQ 694
Y DL Q
Sbjct: 302 YRDLAAQ 308
>ref|XP_545783.2| PREDICTED: similar to Regulator of G-protein signaling 4 (RGS4)
(RGP4) [Canis familiaris].
Length = 205
Score = 158 bits (399), Expect = 1e-38
Identities = 80/167 (47%), Positives = 111/167 (66%), Gaps = 1/167 (0%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNESPGAQPA-GKTDKVMKSFKPTSEEALKWGESLEKLLVHKYG 370
++ AKDMK++LG ++++S + K D+V+ + + EE KW ESLE L+ H+ G
Sbjct: 13 LRSAKDMKHRLGFLLQKSDSCEHNSSHSKKDRVVVCQRVSQEEVKKWAESLENLISHECG 72
Query: 371 LAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSY 550
LA F+AFL++E+SEEN++FW++CE++ I+ E+I++QA KEVNLDS
Sbjct: 73 LAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSC 132
Query: 551 TREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLIN 691
TRE T N+ T CFD AQKRIF LMEKDSY RFL+S YLDL N
Sbjct: 133 TREETSRNMLEPTITCFDEAQKRIFNLMEKDSYRRFLKSRFYLDLAN 179
>ref|XP_849550.1| PREDICTED: similar to regulator of G-protein signalling 8 isoform 2
[Canis familiaris].
Length = 198
Score = 157 bits (398), Expect = 2e-38
Identities = 81/173 (46%), Positives = 111/173 (64%), Gaps = 1/173 (0%)
Frame = +2
Query: 185 RHTMKEAKDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTS-EEALKWGESLEKLLVH 361
R ++ K M+ +LG +++S A DK ++ K S EEA +W +S + LL H
Sbjct: 22 RTGQRQNKGMRTRLGCLSHKSDSCSDFTAILPDKPNRALKRLSTEEATRWADSFDVLLSH 81
Query: 362 KYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNL 541
KYG+A F+AFL+TEFSEENLEFWLACE+F IF E++ +QA +EVN+
Sbjct: 82 KYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNI 141
Query: 542 DSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKK 700
D TRE T+ N+Q + CFD AQ ++ LMEKDSYPRFLRS +YLDL++Q +
Sbjct: 142 DFQTREATRKNMQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLSQSQ 194
>ref|XP_859033.1| PREDICTED: similar to Regulator of G-protein signaling 8 (RGS8)
isoform 3 [Canis familiaris].
Length = 180
Score = 156 bits (395), Expect = 4e-38
Identities = 80/166 (48%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +2
Query: 206 KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTS-EEALKWGESLEKLLVHKYGLAVF 382
K M+ +LG +++S A DK ++ K S EEA +W +S + LL HKYG+A F
Sbjct: 11 KGMRTRLGCLSHKSDSCSDFTAILPDKPNRALKRLSTEEATRWADSFDVLLSHKYGVAAF 70
Query: 383 QAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSYTREH 562
+AFL+TEFSEENLEFWLACE+F IF E++ +QA +EVN+D TRE
Sbjct: 71 RAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDFQTREA 130
Query: 563 TKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKK 700
T+ N+Q + CFD AQ ++ LMEKDSYPRFLRS +YLDL++Q +
Sbjct: 131 TRKNMQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLSQSQ 176
>ref|XP_545701.2| PREDICTED: similar to regulator of G-protein signalling 2, 24kDa
[Canis familiaris].
Length = 285
Score = 155 bits (393), Expect = 7e-38
Identities = 77/178 (43%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Frame = +2
Query: 179 QRRHTMKEA--KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEKL 352
++R MK KD K +L F + + SPG GK K KP+ EEA W E+ ++L
Sbjct: 102 EKREKMKRTLLKDWKTRLSYFLQNSSSPGKPKNGKKSKQQTFIKPSPEEAQLWSEAFDEL 161
Query: 353 LVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKE 532
L KYGLA F+AFL++EF EEN+EFWLACEDF I+ ++I +A KE
Sbjct: 162 LASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKE 221
Query: 533 VNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMS 706
+N+D T+ N+Q T GCF AQKR++ LME +SYPRFL S+ Y DL + +++
Sbjct: 222 INIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLCKKPQIA 279
>ref|XP_545784.2| PREDICTED: similar to Regulator of G-protein signaling 5 (RGS5)
isoform 1 [Canis familiaris].
Length = 181
Score = 145 bits (367), Expect = 8e-35
Identities = 77/168 (45%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNESPGAQPAG---KTDKVMKSFKPTSEEALKWGESLEKLLVHK 364
++ AK++K KLGI ++ +S K +K K+ KP+ +EAL+W +SL+KLL +
Sbjct: 13 LERAKEIKIKLGILLQKPDSAVDLVIPYNEKPEKPAKTQKPSLDEALQWRDSLDKLLQNN 72
Query: 365 YGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLD 544
YGLA F++FL++EFSEENLEFWLACED+ I+ E+I +A KEVN+D
Sbjct: 73 YGLASFKSFLKSEFSEENLEFWLACEDYKKIKSPTKMAEKAKKIYEEFIQTEAPKEVNID 132
Query: 545 SYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLI 688
+T++ T +L + FD+AQKRI+ LMEKDS PRF+RS+ Y +LI
Sbjct: 133 HFTKDITMKSLVEPSLSSFDVAQKRIYALMEKDSLPRFVRSEFYQELI 180
>ref|XP_849782.1| PREDICTED: similar to Regulator of G-protein signaling 18 (RGS18)
[Canis familiaris].
Length = 235
Score = 136 bits (342), Expect = 6e-32
Identities = 72/180 (40%), Positives = 105/180 (58%), Gaps = 4/180 (2%)
Frame = +2
Query: 182 RRHTMKEAK----DMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEK 349
+ T KEAK + +N+L + ++ E ++ + + + + EEA+ WGES +K
Sbjct: 30 KEETSKEAKIRAKEKRNRLSLLVQKPEFHEETHFSRSGHLARETRVSPEEAVIWGESFDK 89
Query: 350 LLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACK 529
LL HK GL F FL+TEFSEEN+EFW+ACE+F I+ ++I A +
Sbjct: 90 LLSHKDGLETFTRFLKTEFSEENIEFWIACEEFKRSKDPQQIIPKAKAIYEKFIQTDAPQ 149
Query: 530 EVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSP 709
EVNLD +T+E ++ T FD AQ R++ LME+DSY RFL+SD+YLDLI + P
Sbjct: 150 EVNLDFHTKEVITKSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLIEGRPQRP 209
>ref|XP_859759.1| PREDICTED: similar to Regulator of G-protein signaling 5 (RGS5)
isoform 2 [Canis familiaris].
Length = 144
Score = 135 bits (339), Expect = 1e-31
Identities = 65/129 (50%), Positives = 91/129 (70%)
Frame = +2
Query: 302 KPTSEEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXX 481
+P+ +EAL+W +SL+KLL + YGLA F++FL++EFSEENLEFWLACED+
Sbjct: 15 RPSLDEALQWRDSLDKLLQNNYGLASFKSFLKSEFSEENLEFWLACEDYKKIKSPTKMAE 74
Query: 482 XXXXIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFL 661
I+ E+I +A KEVN+D +T++ T +L + FD+AQKRI+ LMEKDS PRF+
Sbjct: 75 KAKKIYEEFIQTEAPKEVNIDHFTKDITMKSLVEPSLSSFDVAQKRIYALMEKDSLPRFV 134
Query: 662 RSDLYLDLI 688
RS+ Y +LI
Sbjct: 135 RSEFYQELI 143
>ref|XP_545702.2| PREDICTED: similar to Regulator of G-protein signaling 1 (RGS1)
(Early response protein 1R20) (B-cell activation protein
BL34) isoform 1 [Canis familiaris].
Length = 209
Score = 126 bits (317), Expect = 5e-29
Identities = 60/126 (47%), Positives = 88/126 (69%)
Frame = +2
Query: 317 EALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXI 496
E ++W +SLEKLL ++ G VF++FL++EFSEEN+EFWLACED+ I
Sbjct: 78 EVMQWSQSLEKLLANQIGQDVFRSFLKSEFSEENIEFWLACEDYKKTESDLLHRKAEK-I 136
Query: 497 FAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLY 676
+ ++ A K++N+D +TRE T +++ T CFD AQK I+ LMEKDSYPRFL+S++Y
Sbjct: 137 YKAFVHSDAAKQINIDFHTRESTAKKIKAPTPTCFDEAQKIIYTLMEKDSYPRFLKSNIY 196
Query: 677 LDLINQ 694
L+L+N+
Sbjct: 197 LNLLNE 202
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,235,638
Number of extensions: 2135523
Number of successful extensions: 14488
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 14136
Number of HSP's successfully gapped: 35
Length of query: 501
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 394
Effective length of database: 15,307,552
Effective search space: 6031175488
Effective search space used: 6031175488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013471
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013471
(1504 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071441.1| regulator of G-protein signaling 3 [Bos taur... 187 2e-47
Alignment gi|NP_001069064.1| regulator of G-protein signaling 2 [Bos taur... 158 1e-38
Alignment gi|XP_002686857.1| PREDICTED: regulator of G-protein signaling ... 158 1e-38
Alignment gi|XP_873525.2| PREDICTED: regulator of G-protein signaling 2 [... 158 1e-38
Alignment gi|NP_001040065.1| regulator of G-protein signaling 4 [Bos taur... 157 2e-38
Alignment gi|NP_776875.1| regulator of G-protein signaling 16 [Bos taurus]. 147 2e-35
Alignment gi|NP_001029879.1| regulator of G-protein signaling 5 [Bos taur... 147 2e-35
Alignment gi|NP_001179900.1| regulator of G-protein signaling 18 [Bos tau... 142 8e-34
Alignment gi|XP_002693977.1| PREDICTED: regulator of G-protein signalling... 142 8e-34
Alignment gi|XP_002693976.1| PREDICTED: regulator of G-protein signaling ... 121 1e-27
>ref|NP_001071441.1| regulator of G-protein signaling 3 [Bos taurus].
Length = 850
Score = 187 bits (476), Expect = 2e-47
Identities = 94/117 (80%), Positives = 97/117 (82%)
Frame = +2
Query: 179 QRRHTMKEAKDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEKLLV 358
++R + AKDMKNKLGIFRRRNESPGAQP GKTDKVMKSFKPTSEEALKWGESLEKLLV
Sbjct: 733 RKRKSKNLAKDMKNKLGIFRRRNESPGAQPTGKTDKVMKSFKPTSEEALKWGESLEKLLV 792
Query: 359 HKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACK 529
HKYGLAVFQAFLRTEFSEENLEFWLACEDF IFAEYIAIQACK
Sbjct: 793 HKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEYIAIQACK 849
>ref|NP_001069064.1| regulator of G-protein signaling 2 [Bos taurus].
Length = 211
Score = 158 bits (400), Expect = 1e-38
Identities = 78/180 (43%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Frame = +2
Query: 173 NLQRRHTMKEA--KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLE 346
N ++R MK KD K++L F + + SPG GK K KP+ EEA W E+ +
Sbjct: 26 NEEKREKMKRTLLKDWKSRLSYFLQNSSSPGKPKTGKKSKQQTFIKPSPEEAQLWSEAFD 85
Query: 347 KLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQAC 526
+LL KYGLA F+AFL++EF EEN+EFWLACEDF I+ ++I +A
Sbjct: 86 ELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKAKKIYTDFIEKEAP 145
Query: 527 KEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMS 706
KE+N+D T+ N+Q T GCF AQKR++ LME +SYPRFL S+ Y DL + +++
Sbjct: 146 KEINIDFQTKSLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLCKKPQIT 205
>ref|XP_002686857.1| PREDICTED: regulator of G-protein signaling 2-like [Bos taurus].
Length = 211
Score = 158 bits (400), Expect = 1e-38
Identities = 78/180 (43%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Frame = +2
Query: 173 NLQRRHTMKEA--KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLE 346
N ++R MK KD K++L F + + SPG GK K KP+ EEA W E+ +
Sbjct: 26 NEEKREKMKRTLLKDWKSRLSYFLQNSSSPGKPKTGKKSKQQTFIKPSPEEAQLWSEAFD 85
Query: 347 KLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQAC 526
+LL KYGLA F+AFL++EF EEN+EFWLACEDF I+ ++I +A
Sbjct: 86 ELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKAKKIYTDFIEKEAP 145
Query: 527 KEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMS 706
KE+N+D T+ N+Q T GCF AQKR++ LME +SYPRFL S+ Y DL + +++
Sbjct: 146 KEINIDFQTKSLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLCKKPQIT 205
>ref|XP_873525.2| PREDICTED: regulator of G-protein signaling 2 [Bos taurus].
Length = 211
Score = 158 bits (400), Expect = 1e-38
Identities = 78/180 (43%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Frame = +2
Query: 173 NLQRRHTMKEA--KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLE 346
N ++R MK KD K++L F + + SPG GK K KP+ EEA W E+ +
Sbjct: 26 NEEKREKMKRTLLKDWKSRLSYFLQNSSSPGKPKTGKKSKQQTFIKPSPEEAQLWSEAFD 85
Query: 347 KLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQAC 526
+LL KYGLA F+AFL++EF EEN+EFWLACEDF I+ ++I +A
Sbjct: 86 ELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKAKKIYTDFIEKEAP 145
Query: 527 KEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMS 706
KE+N+D T+ N+Q T GCF AQKR++ LME +SYPRFL S+ Y DL + +++
Sbjct: 146 KEINIDFQTKSLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLCKKPQIT 205
>ref|NP_001040065.1| regulator of G-protein signaling 4 [Bos taurus].
Length = 205
Score = 157 bits (398), Expect = 2e-38
Identities = 79/167 (47%), Positives = 112/167 (67%), Gaps = 1/167 (0%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNESPGAQPA-GKTDKVMKSFKPTSEEALKWGESLEKLLVHKYG 370
++ AKDMK++LG ++++S + K DKV+ + + EE KW ESLE L+ H+ G
Sbjct: 13 LRSAKDMKHRLGFLLQKSDSCEHNSSHSKKDKVVICQRVSHEEVKKWAESLENLISHECG 72
Query: 371 LAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSY 550
LA F+AFL++E+SEEN++FW++CE++ I+ E+I++QA KEVNLDS
Sbjct: 73 LAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSC 132
Query: 551 TREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLIN 691
TRE T N+ T CFD AQ++IF LMEKDSY RFL+S YLDL+N
Sbjct: 133 TREETSRNMLEPTITCFDEAQRKIFNLMEKDSYRRFLKSRFYLDLVN 179
>ref|NP_776875.1| regulator of G-protein signaling 16 [Bos taurus].
Length = 202
Score = 147 bits (371), Expect = 2e-35
Identities = 83/171 (48%), Positives = 103/171 (60%), Gaps = 4/171 (2%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNE-SPGAQPAGKTD---KVMKSFKPTSEEALKWGESLEKLLVH 361
++ AK+ K +LGIF ++E GK + K K K SE+ L W ES + LL
Sbjct: 13 LERAKEFKTRLGIFLHKSELGSDTGSVGKFEWGSKHSKEGKNFSEDVLGWKESFDLLLSS 72
Query: 362 KYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNL 541
K G+A F AFL+TEFSEENLEFWLACE+F IF E+I +A KEVN+
Sbjct: 73 KNGVAAFHAFLKTEFSEENLEFWLACEEFKKLRSATKLGSRAHRIFEEFICSEAPKEVNI 132
Query: 542 DSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQ 694
D TRE T+ NLQ+ T CFD AQ ++ LMEKDSYPRFL+S Y DL Q
Sbjct: 133 DHETRELTRTNLQAATAVCFDAAQWKVRALMEKDSYPRFLKSPAYRDLATQ 183
>ref|NP_001029879.1| regulator of G-protein signaling 5 [Bos taurus].
Length = 181
Score = 147 bits (371), Expect = 2e-35
Identities = 78/168 (46%), Positives = 110/168 (65%), Gaps = 3/168 (1%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNESP---GAQPAGKTDKVMKSFKPTSEEALKWGESLEKLLVHK 364
++ AK++K KLGI ++ ES K +K K+ KP+ +EAL+W +SL+KLL +
Sbjct: 13 LERAKEIKIKLGILLQKPESAIDLVIPYNEKPEKPAKTQKPSLDEALQWRDSLDKLLQNN 72
Query: 365 YGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLD 544
YGLA F++FL++EFSEENLEFW+ACED+ I+ E+I ++A KEVN+D
Sbjct: 73 YGLASFKSFLKSEFSEENLEFWMACEDYKKIKSPVKMAETAKKIYEEFIQVEAPKEVNID 132
Query: 545 SYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLI 688
+T+E T NL + FD+AQKRI LMEKDS PRF+RS+ Y + I
Sbjct: 133 HFTKEITVKNLVEPSPSSFDVAQKRIHALMEKDSLPRFVRSEFYQEFI 180
>ref|NP_001179900.1| regulator of G-protein signaling 18 [Bos taurus].
Length = 235
Score = 142 bits (358), Expect = 8e-34
Identities = 74/180 (41%), Positives = 108/180 (60%), Gaps = 4/180 (2%)
Frame = +2
Query: 182 RRHTMKEAK----DMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEK 349
+ T KEAK + +N+L + ++ P+ ++ ++ K + + EEA+KWGES +K
Sbjct: 30 KEETSKEAKIRAKEKRNRLSLLVQKPVFYDDTPSTRSGQLAKETRVSPEEAIKWGESFDK 89
Query: 350 LLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACK 529
LL HK GL F FL+TEFSEEN+EFW+ACEDF I+ ++I A +
Sbjct: 90 LLSHKDGLETFTRFLKTEFSEENIEFWIACEDFKKSKDPQQIIRKAKAIYEKFIQNDAPQ 149
Query: 530 EVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSP 709
EVNLD +T+E ++ T FD+AQ R++ LME+DSY RFL+SD+YLDL + P
Sbjct: 150 EVNLDFHTKEIISKSITQPTLQSFDVAQSRVYQLMEQDSYMRFLKSDIYLDLTKGRSQRP 209
>ref|XP_002693977.1| PREDICTED: regulator of G-protein signalling 18-like [Bos taurus].
Length = 235
Score = 142 bits (358), Expect = 8e-34
Identities = 74/180 (41%), Positives = 108/180 (60%), Gaps = 4/180 (2%)
Frame = +2
Query: 182 RRHTMKEAK----DMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEK 349
+ T KEAK + +N+L + ++ P+ ++ ++ K + + EEA+KWGES +K
Sbjct: 30 KEETSKEAKIRAKEKRNRLSLLVQKPVFYDDTPSTRSGQLAKETRVSPEEAIKWGESFDK 89
Query: 350 LLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACK 529
LL HK GL F FL+TEFSEEN+EFW+ACEDF I+ ++I A +
Sbjct: 90 LLSHKDGLETFTRFLKTEFSEENIEFWIACEDFKKSKDPQQIIRKAKAIYEKFIQNDAPQ 149
Query: 530 EVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSP 709
EVNLD +T+E ++ T FD+AQ R++ LME+DSY RFL+SD+YLDL + P
Sbjct: 150 EVNLDFHTKEIISKSITQPTLQSFDVAQSRVYQLMEQDSYMRFLKSDIYLDLTKGRSQRP 209
>ref|XP_002693976.1| PREDICTED: regulator of G-protein signaling 2-like [Bos taurus].
Length = 152
Score = 121 bits (304), Expect = 1e-27
Identities = 59/133 (44%), Positives = 85/133 (63%)
Frame = +2
Query: 305 PTSEEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXX 484
PT+E + W E+++ LL ++ GL F+ FL++EFSEEN+EFWLACEDF
Sbjct: 11 PTTE-TVAWSENMDTLLTNQAGLDAFRTFLKSEFSEENVEFWLACEDFKKTESAEKIASK 69
Query: 485 XXXIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLR 664
I++E+I A KE+N+D TR+ N+ T CFD AQK I+ LM DS+PRFL+
Sbjct: 70 ARMIYSEFIEADAPKEINIDFSTRDLISKNIAEPTLKCFDEAQKLIYSLMANDSFPRFLK 129
Query: 665 SDLYLDLINQKKM 703
S++Y L+N K++
Sbjct: 130 SEIYKKLVNSKEI 142
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,649,757
Number of extensions: 2089871
Number of successful extensions: 14384
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 14063
Number of HSP's successfully gapped: 37
Length of query: 501
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 395
Effective length of database: 14,174,046
Effective search space: 5598748170
Effective search space used: 5598748170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013471
(1504 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357620.1| PREDICTED: regulator of G-protein signaling ... 156 3e-38
Alignment gi|XP_003357619.1| PREDICTED: regulator of G-protein signaling ... 156 3e-38
Alignment gi|NP_001172113.1| regulator of G-protein signaling 4 [Sus scro... 156 3e-38
Alignment gi|NP_001038065.1| regulator of G-protein signaling 2 [Sus scro... 155 4e-38
Alignment gi|NP_999521.1| regulator of G-protein signaling 5 [Sus scrofa]. 148 7e-36
Alignment gi|NP_001106488.1| regulator of G-protein signaling 16 [Sus scr... 145 8e-35
Alignment gi|NP_001230822.1| regulator of G-protein signaling 18 [Sus scr... 134 2e-31
Alignment gi|XP_003357665.1| PREDICTED: regulator of G-protein signaling ... 127 2e-29
Alignment gi|XP_003130531.1| PREDICTED: regulator of G-protein signaling ... 123 2e-28
Alignment gi|XP_001927312.2| PREDICTED: regulator of G-protein signaling ... 110 3e-24
>ref|XP_003357620.1| PREDICTED: regulator of G-protein signaling 8-like isoform 2 [Sus
scrofa].
Length = 180
Score = 156 bits (395), Expect = 3e-38
Identities = 80/166 (48%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +2
Query: 206 KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTS-EEALKWGESLEKLLVHKYGLAVF 382
K M+ +LG +++S A DK ++ K S EEA +W +S + LL HKYG+A F
Sbjct: 11 KGMRTRLGCLSHKSDSCSDFTAILPDKPNRALKRLSTEEATRWADSFDVLLSHKYGVAAF 70
Query: 383 QAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSYTREH 562
+AFL+TEFSEENLEFWLACE+F IF E++ +QA +EVN+D TRE
Sbjct: 71 RAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDFQTREA 130
Query: 563 TKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKK 700
T+ N+Q + CFD AQ ++ LMEKDSYPRFLRS +YLDL++Q +
Sbjct: 131 TRKNMQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLSQSQ 176
>ref|XP_003357619.1| PREDICTED: regulator of G-protein signaling 8-like isoform 1 [Sus
scrofa].
Length = 180
Score = 156 bits (395), Expect = 3e-38
Identities = 80/166 (48%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +2
Query: 206 KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTS-EEALKWGESLEKLLVHKYGLAVF 382
K M+ +LG +++S A DK ++ K S EEA +W +S + LL HKYG+A F
Sbjct: 11 KGMRTRLGCLSHKSDSCSDFTAILPDKPNRALKRLSTEEATRWADSFDVLLSHKYGVAAF 70
Query: 383 QAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSYTREH 562
+AFL+TEFSEENLEFWLACE+F IF E++ +QA +EVN+D TRE
Sbjct: 71 RAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDFQTREA 130
Query: 563 TKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKK 700
T+ N+Q + CFD AQ ++ LMEKDSYPRFLRS +YLDL++Q +
Sbjct: 131 TRKNMQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLSQSQ 176
>ref|NP_001172113.1| regulator of G-protein signaling 4 [Sus scrofa].
Length = 205
Score = 156 bits (395), Expect = 3e-38
Identities = 79/167 (47%), Positives = 110/167 (65%), Gaps = 1/167 (0%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNES-PGAQPAGKTDKVMKSFKPTSEEALKWGESLEKLLVHKYG 370
++ AKDMK++LG ++++S + K DKV+ + + EE KW ESLE L+ H+ G
Sbjct: 13 LRSAKDMKHRLGFLLQKSDSCEHSSSHSKKDKVVICQRVSQEEVKKWAESLENLISHECG 72
Query: 371 LAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSY 550
LA F+AFL++E+SEEN++FW++CE++ I+ E+I++Q KEVNLDS
Sbjct: 73 LAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPRAKKIYNEFISVQQTKEVNLDSC 132
Query: 551 TREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLIN 691
TRE T N+ T CFD AQK+IF LMEKDSY RFL+S YLDL N
Sbjct: 133 TREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLAN 179
>ref|NP_001038065.1| regulator of G-protein signaling 2 [Sus scrofa].
Length = 212
Score = 155 bits (393), Expect = 4e-38
Identities = 77/171 (45%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Frame = +2
Query: 179 QRRHTMKEA--KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEKL 352
++R MK KD K +L F + + SPG GK K KP+ EEA W E+ ++L
Sbjct: 28 EKREKMKRTLLKDWKTRLSYFLQNSSSPGKPKTGKKSKPQTFIKPSPEEAQLWAEAFDEL 87
Query: 353 LVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKE 532
L KYGLA F+AFL++EF EEN+EFWLACEDF I+ ++I +A KE
Sbjct: 88 LASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKE 147
Query: 533 VNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDL 685
+N+D T+ N+Q T GCF AQKR++ LME +SYPRFL S+ Y DL
Sbjct: 148 INIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDL 198
>ref|NP_999521.1| regulator of G-protein signaling 5 [Sus scrofa].
Length = 181
Score = 148 bits (374), Expect = 7e-36
Identities = 79/168 (47%), Positives = 110/168 (65%), Gaps = 3/168 (1%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNESPGAQPAG---KTDKVMKSFKPTSEEALKWGESLEKLLVHK 364
++ AK++K KLGI ++ ES K DK +K KP+ +EAL+W +SL+KLL +
Sbjct: 13 LERAKEIKIKLGILLQKPESAVDLVIPYNEKPDKPVKIQKPSLDEALQWRDSLDKLLQNN 72
Query: 365 YGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLD 544
YGLA F++FL++EFSEENLEFW+ACED+ I+ E+I +A KEVN+D
Sbjct: 73 YGLASFKSFLKSEFSEENLEFWMACEDYKKIKSPVKMAEKAKKIYEEFIQSEAPKEVNID 132
Query: 545 SYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLI 688
+T+E T NL + FD+AQKRI+ LMEKDS PRF+RS+ Y + I
Sbjct: 133 HFTKEITMKNLVEPSPSSFDVAQKRIYALMEKDSLPRFVRSEFYQEFI 180
>ref|NP_001106488.1| regulator of G-protein signaling 16 [Sus scrofa].
Length = 202
Score = 145 bits (365), Expect = 8e-35
Identities = 84/172 (48%), Positives = 106/172 (61%), Gaps = 5/172 (2%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNESPGAQPA--GKTD---KVMKSFKPTSEEALKWGESLEKLLV 358
++ AK+ K +LGIF ++E G+ PA GK + K K + SE+ L W ES + LL
Sbjct: 13 LERAKEFKTRLGIFLHKSEL-GSDPASVGKFEWGSKHSKDGRNFSEDVLGWRESFDLLLS 71
Query: 359 HKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVN 538
K G+A F FL+TEFSEENLEFWLACE+F IF E+I +A KEVN
Sbjct: 72 SKNGVAAFHTFLKTEFSEENLEFWLACEEFKKLRSATKLASRAHRIFEEFIRSEAPKEVN 131
Query: 539 LDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQ 694
LD TRE T+ NLQ+ + CFD+AQ + LMEKDSYPRFL+S Y DL Q
Sbjct: 132 LDHETRELTRTNLQAASATCFDVAQGKTRTLMEKDSYPRFLKSPAYRDLAAQ 183
>ref|NP_001230822.1| regulator of G-protein signaling 18 [Sus scrofa].
Length = 235
Score = 134 bits (336), Expect = 2e-31
Identities = 70/173 (40%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Frame = +2
Query: 182 RRHTMKEA----KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEK 349
+ T KEA K+ +N+L + ++ E P+ ++ + K + + EEA+ WGES +K
Sbjct: 30 KEETSKEARIRDKEKRNRLSLLLQKPEFHDDTPSSSSEHLAKKTRISPEEAMIWGESFDK 89
Query: 350 LLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACK 529
LL K GL F FL+TEFS+EN+ FW+ACED+ I+ +I A +
Sbjct: 90 LLSQKDGLETFTRFLKTEFSDENIAFWIACEDYKKSKDPQQIIRKAKAIYETFIQTDAPQ 149
Query: 530 EVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLI 688
EVNLD +T+E ++ T FD AQ R++ LME+DSY RFL+SD+YLDLI
Sbjct: 150 EVNLDFHTKEILAKSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLI 202
>ref|XP_003357665.1| PREDICTED: regulator of G-protein signaling 1 [Sus scrofa].
Length = 209
Score = 127 bits (319), Expect = 2e-29
Identities = 76/195 (38%), Positives = 111/195 (56%), Gaps = 1/195 (0%)
Frame = +2
Query: 110 PGSKVGGPTAMLRGM-YLTRNGNLQRRHTMKEAKDMKNKLGIFRRRNESPGAQPAGKTDK 286
PG + LRG + + Q+R D+K L ES G +PA D
Sbjct: 15 PGMFLSAHPKELRGTDHSLLDNKAQKRRPKTFGMDVKAYLRSMIPHLES-GMKPAKSKDI 73
Query: 287 VMKSFKPTSEEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXX 466
+ +++E ++W +SLEKLL ++ G VF FL++EFSEEN+EFWLACED+
Sbjct: 74 L------SADEVMQWSQSLEKLLANQTGQDVFGNFLKSEFSEENIEFWLACEDYKKTESD 127
Query: 467 XXXXXXXXXIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDS 646
I+ ++ A K++N+D +TRE T +++ T CFD AQK I+ LMEKDS
Sbjct: 128 LLHRKAEQ-IYKAFVQSDAAKQINIDFHTREATARKIKAATPTCFDEAQKIIYTLMEKDS 186
Query: 647 YPRFLRSDLYLDLIN 691
YPRFL+S++YL+L+N
Sbjct: 187 YPRFLKSNIYLNLLN 201
>ref|XP_003130531.1| PREDICTED: regulator of G-protein signaling 21-like [Sus scrofa].
Length = 152
Score = 123 bits (309), Expect = 2e-28
Identities = 57/129 (44%), Positives = 85/129 (65%)
Frame = +2
Query: 317 EALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXI 496
E + W E+++ LL ++ GL F+ FL++EFSEEN+EFWLACEDF I
Sbjct: 14 ETMAWSENMDTLLSNQAGLDAFRTFLKSEFSEENVEFWLACEDFKKTESAEKLVSKAKVI 73
Query: 497 FAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLY 676
++E+I A KE+N+D TR+ N+ TR CFD AQK I+ LM KDS+PRFL+S++Y
Sbjct: 74 YSEFIEADAPKEINIDFSTRDLISKNIAEPTRKCFDEAQKLIYSLMAKDSFPRFLKSEIY 133
Query: 677 LDLINQKKM 703
+L++ +++
Sbjct: 134 KELVHSRQV 142
>ref|XP_001927312.2| PREDICTED: regulator of G-protein signaling 20-like [Sus scrofa].
Length = 242
Score = 110 bits (274), Expect = 3e-24
Identities = 60/132 (45%), Positives = 78/132 (59%)
Frame = +2
Query: 293 KSFKPTSEEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXX 472
+S PT EEA W S E+L++ G F+ FLRTEFSEENL FW+ACE+
Sbjct: 101 ESPSPTLEEASAWARSFEQLMLTAAGRNAFREFLRTEFSEENLLFWMACEELKKEANKTI 160
Query: 473 XXXXXXXIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYP 652
I+ +YI+I + KEV+LDS RE N+ + FD AQ +I+ LM +DSYP
Sbjct: 161 IEEKARIIYEDYISILSPKEVSLDSRVRELIDRNMAEPSPHIFDDAQLQIYTLMHRDSYP 220
Query: 653 RFLRSDLYLDLI 688
RFL S LY DL+
Sbjct: 221 RFLSSTLYKDLL 232
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,041,748
Number of extensions: 1385100
Number of successful extensions: 9533
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 9292
Number of HSP's successfully gapped: 19
Length of query: 501
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 398
Effective length of database: 8,779,541
Effective search space: 3494257318
Effective search space used: 3494257318
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013471
(1504 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_599018.3| regulator of G-protein signaling 3 isoform 2 [M... 297 2e-80
Alignment gi|NP_033088.2| regulator of G-protein signaling 4 [Mus musculu... 159 7e-39
Alignment gi|NP_080656.2| regulator of G-protein signaling 8 [Mus musculu... 157 2e-38
Alignment gi|NP_033087.2| regulator of G-protein signaling 2 [Mus musculu... 155 6e-38
Alignment gi|NP_035397.2| regulator of G-protein signaling 16 [Mus muscul... 145 8e-35
Alignment gi|NP_033089.2| regulator of G-protein signaling 5 [Mus musculu... 144 2e-34
Alignment gi|NP_075019.1| regulator of G-protein signaling 18 [Mus muscul... 135 8e-32
Alignment gi|NP_056626.2| regulator of G-protein signaling 1 [Mus musculu... 123 4e-28
Alignment gi|XP_894544.3| PREDICTED: regulator of G-protein signaling 21-... 123 4e-28
Alignment gi|XP_921002.3| PREDICTED: regulator of G-protein signaling 21-... 123 4e-28
>ref|NP_599018.3| regulator of G-protein signaling 3 isoform 2 [Mus musculus].
Length = 966
Score = 297 bits (760), Expect = 2e-80
Identities = 151/192 (78%), Positives = 157/192 (81%), Gaps = 1/192 (0%)
Frame = +2
Query: 143 LRGMYLTRNGNLQRRHTMKE-AKDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEE 319
+ G LT R+ K AKDMKNKL IFRRRNESPGAQPA KTDK KSFKPTSEE
Sbjct: 775 MSGTDLTECDEASRKRKSKNIAKDMKNKLAIFRRRNESPGAQPASKTDKTTKSFKPTSEE 834
Query: 320 ALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIF 499
ALKW ESLEKLL+HKYGL VFQAFLRTEFSEENLEFWLACEDF IF
Sbjct: 835 ALKWSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIF 894
Query: 500 AEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYL 679
AE+IAIQACKEVNLDSYTREHTK+NLQS+TRGCFDLAQKRIFGLMEKDSYPRFLRSDLYL
Sbjct: 895 AEFIAIQACKEVNLDSYTREHTKENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYL 954
Query: 680 DLINQKKMSPPL 715
DLINQKKMSPPL
Sbjct: 955 DLINQKKMSPPL 966
>ref|NP_033088.2| regulator of G-protein signaling 4 [Mus musculus].
Length = 205
Score = 159 bits (401), Expect = 7e-39
Identities = 80/167 (47%), Positives = 111/167 (66%), Gaps = 1/167 (0%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNES-PGAQPAGKTDKVMKSFKPTSEEALKWGESLEKLLVHKYG 370
++ AKDMK++LG ++++S + K DKV+ + + EE KW ESLE L+ H+ G
Sbjct: 13 LRSAKDMKHRLGFLLQKSDSCEHSSSHSKKDKVVTCQRVSQEEVKKWAESLENLIHHECG 72
Query: 371 LAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSY 550
LA F+AFL++E+SEEN++FW++CE++ I+ E+I++QA KEVNLDS
Sbjct: 73 LAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSC 132
Query: 551 TREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLIN 691
TRE T N+ T CFD AQK+IF LMEKDSY RFL+S YLDL N
Sbjct: 133 TREETSRNMLQPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLTN 179
>ref|NP_080656.2| regulator of G-protein signaling 8 [Mus musculus].
Length = 180
Score = 157 bits (398), Expect = 2e-38
Identities = 81/166 (48%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +2
Query: 206 KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTS-EEALKWGESLEKLLVHKYGLAVF 382
K M+ +LG +++S A DK ++ K S EEA +W ES + LL HKYG+A F
Sbjct: 11 KGMRTRLGCLSHKSDSCSDFTAILPDKPNRALKRLSTEEATRWAESFDVLLSHKYGVAAF 70
Query: 383 QAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSYTREH 562
+AFL+TEFSEENLEFWLACE+F IF E++ +QA +EVN+D TRE
Sbjct: 71 RAFLKTEFSEENLEFWLACEEFKKTRSTAKLVTKAHRIFEEFVDVQAPREVNIDFQTREA 130
Query: 563 TKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKK 700
T+ N+Q + CFD AQ ++ LMEKDSYPRFLRS +YLDL++Q +
Sbjct: 131 TRKNMQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLSQSQ 176
>ref|NP_033087.2| regulator of G-protein signaling 2 [Mus musculus].
Length = 211
Score = 155 bits (393), Expect = 6e-38
Identities = 76/178 (42%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Frame = +2
Query: 179 QRRHTMKEA--KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEKL 352
++R MK KD K +L F + + +PG GK K KP+ EEA W E+ ++L
Sbjct: 28 EKREKMKRTLLKDWKTRLSYFLQNSSAPGKPKTGKKSKQQTFIKPSPEEAQLWAEAFDEL 87
Query: 353 LVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKE 532
L KYGLA F+AFL++EF EEN+EFWLACEDF I+ ++I +A KE
Sbjct: 88 LASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKE 147
Query: 533 VNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMS 706
+N+D T+ N+Q T GCF AQKR++ LME +SYPRFL S+ Y DL + +++
Sbjct: 148 INIDFQTKSLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLCKKPQIT 205
>ref|NP_035397.2| regulator of G-protein signaling 16 [Mus musculus].
Length = 201
Score = 145 bits (366), Expect = 8e-35
Identities = 84/170 (49%), Positives = 102/170 (60%), Gaps = 3/170 (1%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNE-SPGAQPAGKTDKVMKSFKPTS--EEALKWGESLEKLLVHK 364
++ AK+ K +LGIF ++E S K + K K S E+ L W ES + LL K
Sbjct: 13 LERAKEFKTRLGIFLHKSELSSDTGGISKFEWASKHNKERSFSEDVLGWRESFDLLLNSK 72
Query: 365 YGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLD 544
G+A F AFL+TEFSEENLEFWLACE+F IF EYI +A KEVN+D
Sbjct: 73 NGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRSEAPKEVNID 132
Query: 545 SYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQ 694
TRE TK NLQ+ T CFD+AQ + LMEKDSYPRFL+S Y DL Q
Sbjct: 133 HETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDLAAQ 182
>ref|NP_033089.2| regulator of G-protein signaling 5 [Mus musculus].
Length = 181
Score = 144 bits (362), Expect = 2e-34
Identities = 76/168 (45%), Positives = 109/168 (64%), Gaps = 3/168 (1%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNESPGAQPAG---KTDKVMKSFKPTSEEALKWGESLEKLLVHK 364
++ AK++K KLGI ++ +S K +K K+ KP+ EE L+W +SL+KLL +
Sbjct: 13 LERAKEIKIKLGILLQKPDSAVDLVIPYNEKPEKPAKAHKPSLEEVLQWRQSLDKLLQNS 72
Query: 365 YGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLD 544
YG A F++FL++EFSEENLEFW+ACE++ I+ E+I +A KEVN+D
Sbjct: 73 YGFASFKSFLKSEFSEENLEFWVACENYKKIKSPIKMAEKAKQIYEEFIQTEAPKEVNID 132
Query: 545 SYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLI 688
+T++ T NL + FDLAQKRI+ LMEKDS PRF+RS+ Y +LI
Sbjct: 133 HFTKDITMKNLVEPSPRSFDLAQKRIYALMEKDSLPRFVRSEFYKELI 180
>ref|NP_075019.1| regulator of G-protein signaling 18 [Mus musculus].
Length = 235
Score = 135 bits (340), Expect = 8e-32
Identities = 69/169 (40%), Positives = 100/169 (59%)
Frame = +2
Query: 203 AKDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEKLLVHKYGLAVF 382
AK+ +N+L + +R + G A ++ + K + + EEA+KW ES +KLL H+ G+ F
Sbjct: 41 AKEKRNRLSLLLQRPDFHGETQASRSALLAKETRVSPEEAVKWAESFDKLLSHRDGVDAF 100
Query: 383 QAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSYTREH 562
FL+TEFSEEN+EFW+ACEDF I+ ++I A KEVN+D +T+E
Sbjct: 101 TRFLKTEFSEENIEFWVACEDFKKCKEPQQIILKAKAIYEKFIQNDAPKEVNIDFHTKEV 160
Query: 563 TKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSP 709
++ T FD AQ R++ LME DSY RFL+S+ YL LI + P
Sbjct: 161 IAKSIAQPTLHSFDTAQSRVYQLMEHDSYKRFLKSETYLHLIEGRPQRP 209
>ref|NP_056626.2| regulator of G-protein signaling 1 [Mus musculus].
Length = 209
Score = 123 bits (308), Expect = 4e-28
Identities = 64/138 (46%), Positives = 91/138 (65%), Gaps = 4/138 (2%)
Frame = +2
Query: 290 MKSFKP----TSEEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXX 457
MKS K ++EE ++W +SLEKLL ++ G VF FL++EFSEEN+EFWLACED+
Sbjct: 65 MKSAKSKDILSAEEVMQWSQSLEKLLANQTGQNVFGRFLKSEFSEENIEFWLACEDYKKT 124
Query: 458 XXXXXXXXXXXXIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLME 637
I+ ++ A K++N+D +TRE T +++ T FD AQK I+ LME
Sbjct: 125 ETDLLHNKAEN-IYKAFVHSDAVKQINIDFHTRESTAKKIKTPTPTSFDEAQKVIYSLME 183
Query: 638 KDSYPRFLRSDLYLDLIN 691
KDSYPRFL+S++YL+L+N
Sbjct: 184 KDSYPRFLKSNIYLNLLN 201
>ref|XP_894544.3| PREDICTED: regulator of G-protein signaling 21-like [Mus musculus].
Length = 152
Score = 123 bits (308), Expect = 4e-28
Identities = 57/135 (42%), Positives = 86/135 (63%)
Frame = +2
Query: 299 FKPTSEEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXX 478
++ + E L W E+++ LL ++ GL F+ FL++E+SEEN+EFWLACEDF
Sbjct: 8 YRSPTTETLAWSENMDSLLANQAGLDAFRTFLKSEYSEENVEFWLACEDFKKTECREKIA 67
Query: 479 XXXXXIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRF 658
I++E+I A KE+N+D TR+ N+ T CFD AQK I+ LM KDS+PRF
Sbjct: 68 TKAKTIYSEFIVADAPKEINIDFSTRDLISRNIAEPTPKCFDEAQKLIYSLMAKDSFPRF 127
Query: 659 LRSDLYLDLINQKKM 703
L+S++Y L+N +++
Sbjct: 128 LKSEIYKKLVNSQQV 142
>ref|XP_921002.3| PREDICTED: regulator of G-protein signaling 21-like [Mus musculus].
Length = 152
Score = 123 bits (308), Expect = 4e-28
Identities = 57/135 (42%), Positives = 86/135 (63%)
Frame = +2
Query: 299 FKPTSEEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXX 478
++ + E L W E+++ LL ++ GL F+ FL++E+SEEN+EFWLACEDF
Sbjct: 8 YRSPTTETLAWSENMDSLLANQAGLDAFRTFLKSEYSEENVEFWLACEDFKKTECREKIA 67
Query: 479 XXXXXIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRF 658
I++E+I A KE+N+D TR+ N+ T CFD AQK I+ LM KDS+PRF
Sbjct: 68 TKAKTIYSEFIVADAPKEINIDFSTRDLISRNIAEPTPKCFDEAQKLIYSLMAKDSFPRF 127
Query: 659 LRSDLYLDLINQKKM 703
L+S++Y L+N +++
Sbjct: 128 LKSEIYKKLVNSQQV 142
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 54,850,654
Number of extensions: 1669824
Number of successful extensions: 10096
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 9780
Number of HSP's successfully gapped: 30
Length of query: 501
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 395
Effective length of database: 12,433,743
Effective search space: 4911328485
Effective search space used: 4911328485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013471
(1504 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_652760.2| regulator of G-protein signaling 3 isoform 5 [H... 370 e-102
Alignment gi|NP_652759.3| regulator of G-protein signaling 3 isoform 6 [H... 308 7e-84
Alignment gi|NP_066929.1| regulator of G-protein signaling 3 isoform 2 [H... 308 7e-84
Alignment gi|NP_570613.2| regulator of G-protein signaling 3 isoform 1 [H... 308 7e-84
Alignment gi|NP_602299.1| regulator of G-protein signaling 3 isoform 4 [H... 301 1e-81
Alignment gi|NP_005604.1| regulator of G-protein signaling 4 isoform 2 [H... 159 6e-39
Alignment gi|NP_001095915.1| regulator of G-protein signaling 4 isoform 1... 159 6e-39
Alignment gi|NP_203131.1| regulator of G-protein signaling 8 isoform 1 [H... 158 1e-38
Alignment gi|NP_001095920.1| regulator of G-protein signaling 8 isoform 2... 157 2e-38
Alignment gi|NP_002914.1| regulator of G-protein signaling 2 [Homo sapien... 155 9e-38
>ref|NP_652760.2| regulator of G-protein signaling 3 isoform 5 [Homo sapiens].
Length = 311
Score = 370 bits (951), Expect = e-102
Identities = 187/220 (85%), Positives = 189/220 (85%)
Frame = +2
Query: 56 PGTRGGRQEPRGCSQRTDPGSKVGGPTAMLRGMYLTRNGNLQRRHTMKEAKDMKNKLGIF 235
PG G + G S R G KVGGPT MLRGMYLTRNGNLQRRHTMKEAKDMKNKLGIF
Sbjct: 92 PGRGVGDRSQSGASYRPICGPKVGGPTEMLRGMYLTRNGNLQRRHTMKEAKDMKNKLGIF 151
Query: 236 RRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEE 415
RRRNESPGA PAGK DK+MKSFKPTSEEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEE
Sbjct: 152 RRRNESPGAPPAGKADKMMKSFKPTSEEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEE 211
Query: 416 NLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRG 595
NLEFWLACEDF IFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRG
Sbjct: 212 NLEFWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRG 271
Query: 596 CFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 715
CFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL
Sbjct: 272 CFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 311
>ref|NP_652759.3| regulator of G-protein signaling 3 isoform 6 [Homo sapiens].
Length = 1198
Score = 308 bits (790), Expect = 7e-84
Identities = 154/179 (86%), Positives = 158/179 (88%)
Frame = +2
Query: 179 QRRHTMKEAKDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEKLLV 358
++R + AKDMKNKLGIFRRRNESPGA PAGK DK+MKSFKPTSEEALKWGESLEKLLV
Sbjct: 1020 RKRKSKNLAKDMKNKLGIFRRRNESPGAPPAGKADKMMKSFKPTSEEALKWGESLEKLLV 1079
Query: 359 HKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVN 538
HKYGLAVFQAFLRTEFSEENLEFWLACEDF IFAEYIAIQACKEVN
Sbjct: 1080 HKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACKEVN 1139
Query: 539 LDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 715
LDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL
Sbjct: 1140 LDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 1198
>ref|NP_066929.1| regulator of G-protein signaling 3 isoform 2 [Homo sapiens].
Length = 519
Score = 308 bits (790), Expect = 7e-84
Identities = 154/179 (86%), Positives = 158/179 (88%)
Frame = +2
Query: 179 QRRHTMKEAKDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEKLLV 358
++R + AKDMKNKLGIFRRRNESPGA PAGK DK+MKSFKPTSEEALKWGESLEKLLV
Sbjct: 341 RKRKSKNLAKDMKNKLGIFRRRNESPGAPPAGKADKMMKSFKPTSEEALKWGESLEKLLV 400
Query: 359 HKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVN 538
HKYGLAVFQAFLRTEFSEENLEFWLACEDF IFAEYIAIQACKEVN
Sbjct: 401 HKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACKEVN 460
Query: 539 LDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 715
LDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL
Sbjct: 461 LDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 519
>ref|NP_570613.2| regulator of G-protein signaling 3 isoform 1 [Homo sapiens].
Length = 917
Score = 308 bits (790), Expect = 7e-84
Identities = 154/179 (86%), Positives = 158/179 (88%)
Frame = +2
Query: 179 QRRHTMKEAKDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEKLLV 358
++R + AKDMKNKLGIFRRRNESPGA PAGK DK+MKSFKPTSEEALKWGESLEKLLV
Sbjct: 739 RKRKSKNLAKDMKNKLGIFRRRNESPGAPPAGKADKMMKSFKPTSEEALKWGESLEKLLV 798
Query: 359 HKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVN 538
HKYGLAVFQAFLRTEFSEENLEFWLACEDF IFAEYIAIQACKEVN
Sbjct: 799 HKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACKEVN 858
Query: 539 LDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 715
LDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL
Sbjct: 859 LDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 917
>ref|NP_602299.1| regulator of G-protein signaling 3 isoform 4 [Homo sapiens].
Length = 168
Score = 301 bits (771), Expect = 1e-81
Identities = 150/168 (89%), Positives = 151/168 (89%)
Frame = +2
Query: 212 MKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEKLLVHKYGLAVFQAF 391
MKNKLGIFRRRNESPGA PAGK DK+MKSFKPTSEEALKWGESLEKLLVHKYGLAVFQAF
Sbjct: 1 MKNKLGIFRRRNESPGAPPAGKADKMMKSFKPTSEEALKWGESLEKLLVHKYGLAVFQAF 60
Query: 392 LRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSYTREHTKD 571
LRTEFSEENLEFWLACEDF IFAEYIAIQACKEVNLDSYTREHTKD
Sbjct: 61 LRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACKEVNLDSYTREHTKD 120
Query: 572 NLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 715
NLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL
Sbjct: 121 NLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 168
>ref|NP_005604.1| regulator of G-protein signaling 4 isoform 2 [Homo sapiens].
Length = 205
Score = 159 bits (402), Expect = 6e-39
Identities = 80/167 (47%), Positives = 112/167 (67%), Gaps = 1/167 (0%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNESPGAQPA-GKTDKVMKSFKPTSEEALKWGESLEKLLVHKYG 370
++ AKDMK++LG ++++S + K DKV+ + + EE KW ESLE L+ H+ G
Sbjct: 13 LRSAKDMKHRLGFLLQKSDSCEHNSSHNKKDKVVICQRVSQEEVKKWAESLENLISHECG 72
Query: 371 LAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSY 550
LA F+AFL++E+SEEN++FW++CE++ I+ E+I++QA KEVNLDS
Sbjct: 73 LAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSC 132
Query: 551 TREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLIN 691
TRE T N+ T CFD AQK+IF LMEKDSY RFL+S YLDL+N
Sbjct: 133 TREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVN 179
>ref|NP_001095915.1| regulator of G-protein signaling 4 isoform 1 [Homo sapiens].
Length = 302
Score = 159 bits (402), Expect = 6e-39
Identities = 80/167 (47%), Positives = 112/167 (67%), Gaps = 1/167 (0%)
Frame = +2
Query: 194 MKEAKDMKNKLGIFRRRNESPGAQPA-GKTDKVMKSFKPTSEEALKWGESLEKLLVHKYG 370
++ AKDMK++LG ++++S + K DKV+ + + EE KW ESLE L+ H+ G
Sbjct: 110 LRSAKDMKHRLGFLLQKSDSCEHNSSHNKKDKVVICQRVSQEEVKKWAESLENLISHECG 169
Query: 371 LAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSY 550
LA F+AFL++E+SEEN++FW++CE++ I+ E+I++QA KEVNLDS
Sbjct: 170 LAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSC 229
Query: 551 TREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLIN 691
TRE T N+ T CFD AQK+IF LMEKDSY RFL+S YLDL+N
Sbjct: 230 TREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLVN 276
>ref|NP_203131.1| regulator of G-protein signaling 8 isoform 1 [Homo sapiens].
Length = 198
Score = 158 bits (400), Expect = 1e-38
Identities = 82/173 (47%), Positives = 111/173 (64%), Gaps = 1/173 (0%)
Frame = +2
Query: 185 RHTMKEAKDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTS-EEALKWGESLEKLLVH 361
R ++ K M+ +LG +++S A DK ++ K S EEA +W +S + LL H
Sbjct: 22 RTGQRQNKGMRTRLGCLSHKSDSCSDFTAILPDKPNRALKRLSTEEATRWADSFDVLLSH 81
Query: 362 KYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNL 541
KYG+A F+AFL+TEFSEENLEFWLACE+F IF E++ +QA +EVN+
Sbjct: 82 KYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNI 141
Query: 542 DSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKK 700
D TRE T+ NLQ + CFD AQ ++ LMEKDSYPRFLRS +YLDL++Q +
Sbjct: 142 DFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLSQSQ 194
>ref|NP_001095920.1| regulator of G-protein signaling 8 isoform 2 [Homo sapiens].
Length = 180
Score = 157 bits (397), Expect = 2e-38
Identities = 81/166 (48%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +2
Query: 206 KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTS-EEALKWGESLEKLLVHKYGLAVF 382
K M+ +LG +++S A DK ++ K S EEA +W +S + LL HKYG+A F
Sbjct: 11 KGMRTRLGCLSHKSDSCSDFTAILPDKPNRALKRLSTEEATRWADSFDVLLSHKYGVAAF 70
Query: 383 QAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKEVNLDSYTREH 562
+AFL+TEFSEENLEFWLACE+F IF E++ +QA +EVN+D TRE
Sbjct: 71 RAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDFQTREA 130
Query: 563 TKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKK 700
T+ NLQ + CFD AQ ++ LMEKDSYPRFLRS +YLDL++Q +
Sbjct: 131 TRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLSQSQ 176
>ref|NP_002914.1| regulator of G-protein signaling 2 [Homo sapiens].
Length = 211
Score = 155 bits (392), Expect = 9e-38
Identities = 76/178 (42%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Frame = +2
Query: 179 QRRHTMKEA--KDMKNKLGIFRRRNESPGAQPAGKTDKVMKSFKPTSEEALKWGESLEKL 352
++R MK KD K +L F + + +PG GK K KP+ EEA W E+ ++L
Sbjct: 28 EKREKMKRTLLKDWKTRLSYFLQNSSTPGKPKTGKKSKQQAFIKPSPEEAQLWSEAFDEL 87
Query: 353 LVHKYGLAVFQAFLRTEFSEENLEFWLACEDFXXXXXXXXXXXXXXXIFAEYIAIQACKE 532
L KYGLA F+AFL++EF EEN+EFWLACEDF I+ ++I +A KE
Sbjct: 88 LASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKE 147
Query: 533 VNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMS 706
+N+D T+ N+Q T GCF AQKR++ LME +SYPRFL S+ Y DL + +++
Sbjct: 148 INIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLCKKPQIT 205
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,593,241
Number of extensions: 2062866
Number of successful extensions: 13002
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 12669
Number of HSP's successfully gapped: 49
Length of query: 501
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 394
Effective length of database: 14,770,016
Effective search space: 5819386304
Effective search space used: 5819386304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013471
(1504 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1011 0.0
Sscrofa_Chr09 60 4e-06
>Sscrofa_Chr01
|| Length = 315321322
Score = 1011 bits (510), Expect = 0.0
Identities = 513/514 (99%)
Strand = Plus / Minus
Query: 531 aggtaaacctggactcatacacacgggaacacaccaaggacaacctgcagagcgtcacgc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284994300 aggtaaacctggactcatacacacgggaacacaccaaggacaacctgcagagcgtcacgc 284994241
Query: 591 ggggctgctttgatctggcgcagaagcgtatctttgggctcatggagaaggactcgtacc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284994240 ggggctgctttgatctggcgcagaagcgtatctttgggctcatggagaaggactcgtacc 284994181
Query: 651 cacgcttcctccgctctgacctctacctggacctcattaaccagaagaagatgagtcccc 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284994180 cacgcttcctccgctctgacctctacctggacctcattaaccagaagaagatgagtcccc 284994121
Query: 711 cgctttaggggccacgggggtggagctcagcgttcacaccaggcgggctgggtgcctccc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284994120 cgctttaggggccacgggggtggagctcagcgttcacaccaggcgggctgggtgcctccc 284994061
Query: 771 cactgcctccctctccccgcgacaggggggcaagcaagcccggaaggctgtgtccggaca 830
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 284994060 cactgcctccctctccccgtgacaggggggcaagcaagcccggaaggctgtgtccggaca 284994001
Query: 831 gacagacggacatttggatgagaggcctggaccaagagaggcccaggccactggaggagt 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284994000 gacagacggacatttggatgagaggcctggaccaagagaggcccaggccactggaggagt 284993941
Query: 891 agagggactggccccagtgggtccccactgccctggtacgagggggcccgagggccctgg 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284993940 agagggactggccccagtgggtccccactgccctggtacgagggggcccgagggccctgg 284993881
Query: 951 caggtcaggggccctggctgagccagatccggagctgctgctcccggatgtggagactct 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284993880 caggtcaggggccctggctgagccagatccggagctgctgctcccggatgtggagactct 284993821
Query: 1011 tgcaatgaccaagttccttaaagaactggctgat 1044
||||||||||||||||||||||||||||||||||
Sbjct: 284993820 tgcaatgaccaagttccttaaagaactggctgat 284993787
Score = 724 bits (365), Expect = 0.0
Identities = 365/365 (100%)
Strand = Plus / Minus
Query: 1109 acccctgccttgagttttatttatttaaacagtagctggatgcttggcacgtcgtcctgt 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284993722 acccctgccttgagttttatttatttaaacagtagctggatgcttggcacgtcgtcctgt 284993663
Query: 1169 actaggaaaccttttgcctcatcagttttcctaatttccaagtgcaatattttaaccaac 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284993662 actaggaaaccttttgcctcatcagttttcctaatttccaagtgcaatattttaaccaac 284993603
Query: 1229 gccttgtgaaaagccacctcgcagagaaggtggacaccatttccggtttcaggggattca 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284993602 gccttgtgaaaagccacctcgcagagaaggtggacaccatttccggtttcaggggattca 284993543
Query: 1289 ctggtcccaagccccagtggcgggcagctgggactgctggactgacaaggcccggagggg 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284993542 ctggtcccaagccccagtggcgggcagctgggactgctggactgacaaggcccggagggg 284993483
Query: 1349 tgggggccgcagtctgacctcacaccgaaatccagcacccctgagtgagggccccccggg 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284993482 tgggggccgcagtctgacctcacaccgaaatccagcacccctgagtgagggccccccggg 284993423
Query: 1409 ggctccagggaagcatggcaccctcagaccagacagtggccgagttctggagcaaataaa 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284993422 ggctccagggaagcatggcaccctcagaccagacagtggccgagttctggagcaaataaa 284993363
Query: 1469 aggcc 1473
|||||
Sbjct: 284993362 aggcc 284993358
Score = 381 bits (192), Expect = e-103
Identities = 198/200 (99%)
Strand = Plus / Minus
Query: 2 aatcgactgggagcccagcgagcgagcactcggctgcagccagaactattgccgcctggg 61
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 284997001 aatcgactgggagcccagcgagcaagcactcggctgcagccagaactattgccgcctggg 284996942
Query: 62 acgcggggtgggagacaggagccccgggggtgctctcagcggaccgacccaggcagcaag 121
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 284996941 acgcggggtgggagacaggagccccgggggtgctctcagcggaccgtcccaggcagcaag 284996882
Query: 122 gtggggggccctacagcgatgctccgaggcatgtacctcactcggaacgggaacctccag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284996881 gtggggggccctacagcgatgctccgaggcatgtacctcactcggaacgggaacctccag 284996822
Query: 182 aggcggcacaccatgaagga 201
||||||||||||||||||||
Sbjct: 284996821 aggcggcacaccatgaagga 284996802
Score = 331 bits (167), Expect = 7e-88
Identities = 170/171 (99%)
Strand = Plus / Minus
Query: 366 atggcttagcggtcttccaagccttccttcgcaccgagtttagtgaggagaacctggaat 425
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 284995525 atggcttagcggtcttccaagccttccttcgcactgagtttagtgaggagaacctggaat 284995466
Query: 426 tctggctggcatgcgaggacttcaagaaggtcaagtcacagtccaagatggcagccaagg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284995465 tctggctggcatgcgaggacttcaagaaggtcaagtcacagtccaagatggcagccaagg 284995406
Query: 486 ccaagaagatctttgctgagtatatcgccatccaggcctgcaaggaggtaa 536
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284995405 ccaagaagatctttgctgagtatatcgccatccaggcctgcaaggaggtaa 284995355
Score = 204 bits (103), Expect = 1e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 202 agccaaggacatgaagaacaagctgggcatcttcaggcggcggaacgaatcccctggggc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284996702 agccaaggacatgaagaacaagctgggcatcttcaggcggcggaacgaatcccctggggc 284996643
Query: 262 ccagccagcgggcaagacagacaaagtgatgaagtcattcaag 304
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284996642 ccagccagcgggcaagacagacaaagtgatgaagtcattcaag 284996600
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 304 gcccacctcagaggaagcactcaagtggggcgagtccttggagaagctgctggtccacaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284996210 gcccacctcagaggaagcactcaagtggggcgagtccttggagaagctgctggtccacaa 284996151
Query: 364 at 365
||
Sbjct: 284996150 at 284996149
>Sscrofa_Chr09
|| Length = 153670197
Score = 60.0 bits (30), Expect = 4e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 401 gagtttagtgaggagaacctggaattctggctggcatgcgaggacttcaagaag 454
||||| || |||||||||||||| ||||||||||| || ||||| |||||||||
Sbjct: 136254836 gagttcagcgaggagaacctggagttctggctggcctgtgaggagttcaagaag 136254889
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,189,249
Number of extensions: 311
Number of successful extensions: 311
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 7
Length of query: 1504
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1483
Effective length of database: 2,808,413,156
Effective search space: 4164876710348
Effective search space used: 4164876710348
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)