BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013488
         (1391 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001075905.1| cell division cycle protein 20 homolog [Bos ...   835   0.0  
Alignment   gi|NP_001032698.1| fizzy/cell division cycle 20 related 1 [Bos ...   250   2e-66
Alignment   gi|XP_001254540.1| PREDICTED: Fzr1 protein isoform 1 [Bos tauru...   250   2e-66
Alignment   gi|NP_001193911.1| cell division cycle protein 20 homolog B [Bo...   237   2e-62
Alignment   gi|XP_002684245.1| PREDICTED: Fzr1 protein [Bos taurus].             184   2e-46
Alignment   gi|NP_001095379.1| katanin p80 WD40-containing subunit B1 [Bos ...    81   3e-15
Alignment   gi|NP_001029502.1| U4/U6 small nuclear ribonucleoprotein Prp4 [...    72   2e-12
Alignment   gi|NP_001179958.1| F-box-like/WD repeat-containing protein TBL1...    70   3e-12
Alignment   gi|XP_002702503.1| PREDICTED: transducin (beta)-like 1 X-linked...    70   4e-12
Alignment   gi|NP_001138704.1| F-box-like/WD repeat-containing protein TBL1...    69   8e-12

>ref|NP_001075905.1| cell division cycle protein 20 homolog [Bos taurus].
          Length = 499

 Score =  835 bits (2156), Expect = 0.0
 Identities = 403/433 (93%), Positives = 413/433 (95%)
 Frame = +3

Query: 93   MAQFVFESDLHSLLQLDAPIPNAPPARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTP 272
            MAQFVFESDLHSLLQLD PIPNAPPARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTP
Sbjct: 1    MAQFVFESDLHSLLQLDTPIPNAPPARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTP 60

Query: 273  GKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALNL 452
            GKS+SK+QTTPSKPGGDRYIPHR+ASQMEVASFLLSKENQPDNS+TPTKKEHQKAWALNL
Sbjct: 61   GKSSSKLQTTPSKPGGDRYIPHRNASQMEVASFLLSKENQPDNSETPTKKEHQKAWALNL 120

Query: 453  NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE 632
            NGFD+EEAKILRLSGKPQNAPEGYQNRLK LYSQKATPGSSRKTCRYIPSLPDRILDAPE
Sbjct: 121  NGFDMEEAKILRLSGKPQNAPEGYQNRLKELYSQKATPGSSRKTCRYIPSLPDRILDAPE 180

Query: 633  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNY 812
            IRNDYYLNLVDWSSGNVLAVALDNSVYLWSAS+GDILQLLQMEQPGDY+SSVAWIKEGNY
Sbjct: 181  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASTGDILQLLQMEQPGDYISSVAWIKEGNY 240

Query: 813  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEH 992
            LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYIL            DVRVAEH
Sbjct: 241  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILSSGSRSGHIHHHDVRVAEH 300

Query: 993  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 1172
            HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA
Sbjct: 301  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 360

Query: 1173 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGF 1352
            VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH QVCSILWSP+ +ELISGHGF
Sbjct: 361  VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 420

Query: 1353 AQNQLGXLEVPTM 1391
            AQNQL   + PTM
Sbjct: 421  AQNQLVIWKYPTM 433


>ref|NP_001032698.1| fizzy/cell division cycle 20 related 1 [Bos taurus].
          Length = 493

 Score =  250 bits (638), Expect = 2e-66
 Identities = 154/417 (36%), Positives = 222/417 (53%), Gaps = 41/417 (9%)
 Frame = +3

Query: 264  RTPGKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWA 443
            RT   +NS + ++PSK G DR+IP R+ +   V +F    EN+   SQ    K+     A
Sbjct: 29   RTLTPANSPV-SSPSKHG-DRFIPSRAGANWSV-NFHRINENEKSPSQNRKAKD-----A 80

Query: 444  LNLNGFD------VEEAKILRLSGKPQNAPEGYQNRLKV------------LYSQKATPG 569
             + NG D      + + ++L    +    P+    RL+             L +++++P 
Sbjct: 81   TSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPERKGLFTYSLSTKRSSPD 140

Query: 570  ----------------------SSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNV 683
                                  S RK  R I  +P ++LDAPE+++D+YLNLVDWSS NV
Sbjct: 141  DGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNV 200

Query: 684  LAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQ 863
            L+V L   VYLWSA +  + +L  +   GD V+SV W + GN +AVGT    VQ+WD   
Sbjct: 201  LSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAA 260

Query: 864  QKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAE-HHVATLSGHSQEVCGLR 1040
             K+L  +  H+ARVG+L WN+  L            D+R         L GH QEVCGL+
Sbjct: 261  GKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLK 320

Query: 1041 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 1220
            W+ D + LASGGNDN + VW          P+Q +T+H  AVKA+AW P Q  +LA+GGG
Sbjct: 321  WSTDHQLLASGGNDNKLLVW----NHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGG 376

Query: 1221 TSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGFAQNQLGXLEVPTM 1391
            T+DR IR WN  +G  L  +D   QVC++ WS +  EL+S HG++QNQ+   + P++
Sbjct: 377  TADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSL 433


>ref|XP_001254540.1| PREDICTED: Fzr1 protein isoform 1 [Bos taurus].
          Length = 493

 Score =  250 bits (638), Expect = 2e-66
 Identities = 154/417 (36%), Positives = 222/417 (53%), Gaps = 41/417 (9%)
 Frame = +3

Query: 264  RTPGKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWA 443
            RT   +NS + ++PSK G DR+IP R+ +   V +F    EN+   SQ    K+     A
Sbjct: 29   RTLTPANSPV-SSPSKHG-DRFIPSRAGANWSV-NFHRINENEKSPSQNRKAKD-----A 80

Query: 444  LNLNGFD------VEEAKILRLSGKPQNAPEGYQNRLKV------------LYSQKATPG 569
             + NG D      + + ++L    +    P+    RL+             L +++++P 
Sbjct: 81   TSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPERKGLFTYSLSTKRSSPD 140

Query: 570  ----------------------SSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNV 683
                                  S RK  R I  +P ++LDAPE+++D+YLNLVDWSS NV
Sbjct: 141  DGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNV 200

Query: 684  LAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQ 863
            L+V L   VYLWSA +  + +L  +   GD V+SV W + GN +AVGT    VQ+WD   
Sbjct: 201  LSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAA 260

Query: 864  QKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAE-HHVATLSGHSQEVCGLR 1040
             K+L  +  H+ARVG+L WN+  L            D+R         L GH QEVCGL+
Sbjct: 261  GKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLK 320

Query: 1041 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 1220
            W+ D + LASGGNDN + VW          P+Q +T+H  AVKA+AW P Q  +LA+GGG
Sbjct: 321  WSTDHQLLASGGNDNKLLVW----NHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGG 376

Query: 1221 TSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGFAQNQLGXLEVPTM 1391
            T+DR IR WN  +G  L  +D   QVC++ WS +  EL+S HG++QNQ+   + P++
Sbjct: 377  TADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSL 433


>ref|NP_001193911.1| cell division cycle protein 20 homolog B [Bos taurus].
          Length = 514

 Score =  237 bits (605), Expect = 2e-62
 Identities = 141/425 (33%), Positives = 214/425 (50%), Gaps = 5/425 (1%)
 Frame = +3

Query: 108  FESDLHSLLQLDAPIPNAP-PARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTPGKSN 284
            F S+L   L  + P+ ++P   RW++     AG   +   +    HS    P      + 
Sbjct: 54   FTSNLAKRLSAEVPVASSPITTRWRQSQ---AGDVTA--LSFGEEHSTADLPETVLKMTP 108

Query: 285  SKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALNLNGFD 464
             K   TP         P++ +S    ++F   K     N     K   +    LN     
Sbjct: 109  EKETLTPGSYKEPLKTPNKGSSGTNNSAFQFGKAPHALNRGWKDKVASKDPKCLNQLFST 168

Query: 465  VEEAK----ILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE 632
               A+     ++   + Q   +G ++ ++  Y Q+ +         Y    P+  +    
Sbjct: 169  QNVAQQVNGSMQFCERSQCTWKGCRDGVRDGYFQRFSD------INYSILQPEVKIHLTG 222

Query: 633  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNY 812
            +RNDYYLN++DW+  N++A+AL +SVY+W+  + + ++ +    P +YVSSV+W+ EG  
Sbjct: 223  LRNDYYLNILDWNFQNLIAIALGSSVYVWNGDNHNRIENMYFSLPCNYVSSVSWMTEGTC 282

Query: 813  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEH 992
            LAVGTS  E+QLWD+  +KRLRNM  H + VG+L WN YIL            DVRVA+H
Sbjct: 283  LAVGTSEGEIQLWDLVTKKRLRNMLGHLSVVGALSWNHYILSSGSRLGRVYHHDVRVAQH 342

Query: 993  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 1172
            HV TL  H+Q VCGL+WAP GR L+SG +D L+ +WP  PG     P         AVKA
Sbjct: 343  HVGTLQ-HTQAVCGLKWAPGGRLLSSGCSDGLLTIWPYDPGANAQGPPLKVIHQSTAVKA 401

Query: 1173 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGF 1352
            + WCPWQ+ VLA GGG  D  + I ++ +G  +       Q+CS+ W P  +E+ +G G 
Sbjct: 402  IDWCPWQTEVLAVGGGMKDGRLHILDISTGQSIQTPSTDSQICSLTWLPKTKEIATGQGS 461

Query: 1353 AQNQL 1367
             +N +
Sbjct: 462  PKNDV 466


>ref|XP_002684245.1| PREDICTED: Fzr1 protein [Bos taurus].
          Length = 404

 Score =  184 bits (467), Expect = 2e-46
 Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 1/219 (0%)
 Frame = +3

Query: 738  ILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLC 917
            + +L  +   GD V+SV W + GN +AVGT    VQ+WD    K+L  +  H+ARVG+L 
Sbjct: 130  VTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEGHTARVGALA 189

Query: 918  WNSYILXXXXXXXXXXXXDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVN 1094
            WN+  L            D+R         L GH QEVCGL+W+ D + LASGGNDN + 
Sbjct: 190  WNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLASGGNDNKLL 249

Query: 1095 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 1274
            VW          P+Q +T+H  AVKA+AW P Q  +LA+GGGT+DR IR WN  +G  L 
Sbjct: 250  VW----NHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQPLQ 305

Query: 1275 AVDAHFQVCSILWSPYXQELISGHGFAQNQLGXLEVPTM 1391
             +D   QVC++ WS +  EL+S HG++QNQ+   + P++
Sbjct: 306  CIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSL 344


>ref|NP_001095379.1| katanin p80 WD40-containing subunit B1 [Bos taurus].
          Length = 663

 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 5/230 (2%)
 Frame = +3

Query: 669  SSGNVLAVALDNS-VYLWSASSGD-ILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEV 842
            +SG +LA   D+  V LWS +  + I+ L     P   V SV        +  G+ S  +
Sbjct: 31   ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP---VESVRLNTPEELIVAGSQSGSI 87

Query: 843  QLWDVQQQKRLRNMTSHSARVGSLCWNSY--ILXXXXXXXXXXXXDVRVAEHHVATLSGH 1016
            ++WD++  K LR +  H A + SL ++ Y   +            D+R  +  V    GH
Sbjct: 88   RVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVFRYRGH 146

Query: 1017 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 1196
            SQ V  LR++PDG+ LAS  +D+ V +W    G+     +  F  H G V  V + P   
Sbjct: 147  SQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK----MMSEFPGHTGPVNVVEFHP--- 199

Query: 1197 NVLATGGGTSDRHIRIWNVCSGACLSAVDAH-FQVCSILWSPYXQELISG 1343
            N      G+SDR IR W++     +S ++     V SIL++P    L SG
Sbjct: 200  NEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSILFNPDGCCLYSG 249


>ref|NP_001029502.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Bos taurus].
          Length = 521

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 2/212 (0%)
 Frame = +3

Query: 660  VDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAE 839
            +D    N+ + A D SV LWS  S +   +  +E     V+ V W   G +L        
Sbjct: 288  LDQKDVNLASCAADGSVKLWSLDSDE--PVADIEGHTVRVARVTWHPSGRFLGTTCYDRS 345

Query: 840  VQLWDVQQQKRLRNMTSHSARVGSLCWNS--YILXXXXXXXXXXXXDVRVAEHHVATLSG 1013
             +LWD++ Q+ + +   HS  V  + ++    +             D+R     +  L G
Sbjct: 346  WRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRC-IMFLEG 404

Query: 1014 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 1193
            H +E+ G+ ++P+G H+A+G  DN   VW           + T   HQ  V  V + P  
Sbjct: 405  HLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRR----CVYTIPAHQNLVTGVKFEPIH 460

Query: 1194 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 1289
             N L T  G  D   +IW     + L  +  H
Sbjct: 461  GNFLLT--GAYDNTAKIWTHPGWSPLKTLAGH 490


>ref|NP_001179958.1| F-box-like/WD repeat-containing protein TBL1XR1 [Bos taurus].
          Length = 514

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 91/428 (21%), Positives = 155/428 (36%), Gaps = 20/428 (4%)
 Frame = +3

Query: 120  LHSLLQLDAPIPNAPPARWQ----RKAKEAAGPAPSPMRAANRSHSAGRTPGRTPGKSNS 287
            + SL  +DA +P+    R Q    + A++ A  A +   A N+  SA        G+ N 
Sbjct: 78   IESLSLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAAAATNQQGSAKNGENTANGEEN- 136

Query: 288  KMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALNLNGFDV 467
                      G   I +     MEV   +      P N     +    + +    N    
Sbjct: 137  ----------GAHTIANNHTDMMEVDGDV----EIPPNKAVVLRGHESEVFICAWN---- 178

Query: 468  EEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDY 647
                 L  SG   +    +        S+ +T GS++   R+   + +   D P  ++  
Sbjct: 179  -PVSDLLASGSGDSTARIWN------LSENSTSGSTQLVLRHC--IREGGQDVPSNKD-- 227

Query: 648  YLNLVDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAV 821
             +  +DW+S G +LA  + D    +W+        L Q + P   + ++ W K+GN++  
Sbjct: 228  -VTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGP---IFALKWNKKGNFILS 283

Query: 822  GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEHHVA 1001
                    +WD    +  +    HSA    + W S                    +  + 
Sbjct: 284  AGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIK 343

Query: 1002 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 1181
            T  GH+ EV  ++W P G  LAS  +D  + +W           +     H   +  + W
Sbjct: 344  TFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDN----CVHDLQAHNKEIYTIKW 399

Query: 1182 CPWQSNVLATGGGTS-------------DRHIRIWNVCSGACLSAVDAHFQ-VCSILWSP 1319
             P       TG GTS             D  +R+W+V  G C+  +  H + V S+ +SP
Sbjct: 400  SP-------TGPGTSNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSP 452

Query: 1320 YXQELISG 1343
              + L SG
Sbjct: 453  DGRYLASG 460


>ref|XP_002702503.1| PREDICTED: transducin (beta)-like 1 X-linked receptor 1 isoform 1
            [Bos taurus].
          Length = 376

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 64/281 (22%), Positives = 111/281 (39%), Gaps = 16/281 (5%)
 Frame = +3

Query: 549  SQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSS-GNVLAV-ALDNSVYLWS 722
            S+ +T GS++   R+   + +   D P  ++   +  +DW+S G +LA  + D    +W+
Sbjct: 61   SENSTSGSTQLVLRHC--IREGGQDVPSNKD---VTSLDWNSEGTLLATGSYDGFARIWT 115

Query: 723  ASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 902
                    L Q + P   + ++ W K+GN++          +WD    +  +    HSA 
Sbjct: 116  KDGNLASTLGQHKGP---IFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAP 172

Query: 903  VGSLCWNSYILXXXXXXXXXXXXDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND 1082
               + W S                    +  + T  GH+ EV  ++W P G  LAS  +D
Sbjct: 173  ALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDD 232

Query: 1083 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS------------ 1226
              + +W           +     H   +  + W P       TG GTS            
Sbjct: 233  MTLKIWSMKQDN----CVHDLQAHNKEIYTIKWSP-------TGPGTSNPNANLMLASAS 281

Query: 1227 -DRHIRIWNVCSGACLSAVDAHFQ-VCSILWSPYXQELISG 1343
             D  +R+W+V  G C+  +  H + V S+ +SP  + L SG
Sbjct: 282  FDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASG 322


>ref|NP_001138704.1| F-box-like/WD repeat-containing protein TBL1X [Bos taurus].
          Length = 528

 Score = 69.3 bits (168), Expect = 8e-12
 Identities = 54/237 (22%), Positives = 93/237 (39%), Gaps = 9/237 (3%)
 Frame = +3

Query: 660  VDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSS 833
            +DW+S G +LA  + D    +W+        L Q + P   + ++ W K+GNY+      
Sbjct: 245  LDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGP---IFALKWNKKGNYILSAGVD 301

Query: 834  AEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEHHVATLSG 1013
                +WD    +  +    HSA    + W +                    +  V T  G
Sbjct: 302  KTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQG 361

Query: 1014 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW- 1190
            H+ EV  ++W P G  LAS  +D  + +W           +     H   +  + W P  
Sbjct: 362  HTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD----TCVHDLQAHSKEIYTIKWSPTG 417

Query: 1191 -----QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQ-VCSILWSPYXQELISG 1343
                  ++ +     + D  +R+W+V  G CL  +  H + V S+ +SP  + L SG
Sbjct: 418  PATSNPNSSIMLASASFDSTVRLWDVERGVCLHTLTKHQEPVYSVAFSPDGKYLASG 474



 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
 Frame = +3

Query: 777  VSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWN----------- 923
            V+++ W   G  LA  +    +++W ++Q   + ++ +HS  + ++ W+           
Sbjct: 366  VNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNS 425

Query: 924  SYILXXXXXXXXXXXXDVR--VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 1097
            S +L            DV   V  H   TL+ H + V  + ++PDG++LASG  D  V++
Sbjct: 426  SIMLASASFDSTVRLWDVERGVCLH---TLTKHQEPVYSVAFSPDGKYLASGSFDKCVHI 482

Query: 1098 WPSAPG 1115
            W +  G
Sbjct: 483  WNTQSG 488


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,618,853
Number of extensions: 1944637
Number of successful extensions: 10413
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 9972
Number of HSP's successfully gapped: 67
Length of query: 463
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 357
Effective length of database: 14,174,046
Effective search space: 5060134422
Effective search space used: 5060134422
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013488
         (1391 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_539651.2| PREDICTED: similar to Cell division cycle prote...   825   0.0  
Alignment   gi|XP_542177.2| PREDICTED: similar to Fizzy-related protein hom...   250   3e-66
Alignment   gi|XP_868546.1| PREDICTED: similar to Fizzy-related protein hom...   243   3e-64
Alignment   gi|XP_868549.1| PREDICTED: similar to Fizzy-related protein hom...   241   2e-63
Alignment   gi|XP_535236.2| PREDICTED: similar to cell division cycle 20 ho...   232   7e-61
Alignment   gi|XP_868541.1| PREDICTED: similar to Fizzy-related protein hom...   191   1e-48
Alignment   gi|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containi...    80   4e-15
Alignment   gi|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containi...    80   4e-15
Alignment   gi|XP_532038.2| PREDICTED: similar to PRP4 pre-mRNA processing ...    71   2e-12
Alignment   gi|XP_853719.1| PREDICTED: similar to transducin (beta)-like 1 ...    69   8e-12

>ref|XP_539651.2| PREDICTED: similar to Cell division cycle protein 20 homolog (p55CDC)
            [Canis familiaris].
          Length = 499

 Score =  825 bits (2132), Expect = 0.0
 Identities = 400/433 (92%), Positives = 409/433 (94%)
 Frame = +3

Query: 93   MAQFVFESDLHSLLQLDAPIPNAPPARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTP 272
            MAQFVFESDLHSLLQLDAPIPNAPPARWQRKA+EAAGPAPSPMRAANRSHSAGRTPGRTP
Sbjct: 1    MAQFVFESDLHSLLQLDAPIPNAPPARWQRKAREAAGPAPSPMRAANRSHSAGRTPGRTP 60

Query: 273  GKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALNL 452
            GKS+SK QTTPSKPGGDRYIPHRSASQMEVASFLLSKENQP+ S TPTKKEHQKAWALNL
Sbjct: 61   GKSSSKAQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPEESHTPTKKEHQKAWALNL 120

Query: 453  NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE 632
            NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGS+RKTCRYIPSLPDRILDAPE
Sbjct: 121  NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSTRKTCRYIPSLPDRILDAPE 180

Query: 633  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNY 812
            IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPG+Y+SSVAWIKEGNY
Sbjct: 181  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY 240

Query: 813  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEH 992
            LAVGTSSAEVQLWDVQQQKRLRNMT HSARV SLCWNSYIL            DVRVAEH
Sbjct: 241  LAVGTSSAEVQLWDVQQQKRLRNMTGHSARVSSLCWNSYILSSGSRSGHIHHHDVRVAEH 300

Query: 993  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 1172
            HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA
Sbjct: 301  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 360

Query: 1173 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGF 1352
            VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA  QVCSILWSP+ +ELISGHGF
Sbjct: 361  VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAQSQVCSILWSPHYKELISGHGF 420

Query: 1353 AQNQLGXLEVPTM 1391
            AQNQL   + PTM
Sbjct: 421  AQNQLVIWKYPTM 433


>ref|XP_542177.2| PREDICTED: similar to Fizzy-related protein homolog (Fzr) (Cdh1/Hct1
            homolog) isoform 1 [Canis familiaris].
          Length = 493

 Score =  250 bits (638), Expect = 3e-66
 Identities = 154/417 (36%), Positives = 222/417 (53%), Gaps = 41/417 (9%)
 Frame = +3

Query: 264  RTPGKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWA 443
            RT   +NS + ++PSK G DR+IP R+ +   V +F    EN+   SQ    K+     A
Sbjct: 29   RTLTPANSPV-SSPSKHG-DRFIPSRAGANWSV-NFHRINENEKSPSQNRKAKD-----A 80

Query: 444  LNLNGFD------VEEAKILRLSGKPQNAPEGYQNRLKV------------LYSQKATPG 569
             + NG D      + + ++L    +    P+    RL+             L +++++P 
Sbjct: 81   TSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRSSPD 140

Query: 570  ----------------------SSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNV 683
                                  S RK  R I  +P ++LDAPE+++D+YLNLVDWSS NV
Sbjct: 141  DGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNV 200

Query: 684  LAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQ 863
            L+V L   VYLWSA +  + +L  +   GD V+SV W + GN +AVGT    VQ+WD   
Sbjct: 201  LSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAA 260

Query: 864  QKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAE-HHVATLSGHSQEVCGLR 1040
             K+L  +  H+ARVG+L WN+  L            D+R         L GH QEVCGL+
Sbjct: 261  GKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLK 320

Query: 1041 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 1220
            W+ D + LASGGNDN + VW          P+Q +T+H  AVKA+AW P Q  +LA+GGG
Sbjct: 321  WSTDHQLLASGGNDNKLLVW----NHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGG 376

Query: 1221 TSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGFAQNQLGXLEVPTM 1391
            T+DR IR WN  +G  L  +D   QVC++ WS +  EL+S HG++QNQ+   + P++
Sbjct: 377  TADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSL 433


>ref|XP_868546.1| PREDICTED: similar to Fizzy-related protein homolog (Fzr) (Cdh1/Hct1
            homolog) isoform 3 [Canis familiaris].
          Length = 481

 Score =  243 bits (620), Expect = 3e-64
 Identities = 154/425 (36%), Positives = 222/425 (52%), Gaps = 49/425 (11%)
 Frame = +3

Query: 264  RTPGKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWA 443
            RT   +NS + ++PSK G DR+IP R+ +   V +F    EN+   SQ    K+     A
Sbjct: 9    RTLTPANSPV-SSPSKHG-DRFIPSRAGANWSV-NFHRINENEKSPSQNRKAKD-----A 60

Query: 444  LNLNGFD------VEEAKILRLSGKPQNAPEGYQNRLKV------------LYSQKATPG 569
             + NG D      + + ++L    +    P+    RL+             L +++++P 
Sbjct: 61   TSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRSSPD 120

Query: 570  ----------------------SSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNV 683
                                  S RK  R I  +P ++LDAPE+++D+YLNLVDWSS NV
Sbjct: 121  DGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNV 180

Query: 684  LAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAW--------IKEGNYLAVGTSSAE 839
            L+V L   VYLWSA +  + +L  +   GD V+SV W        +  GN +AVGT    
Sbjct: 181  LSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERVSTQMVTVGNLVAVGTHKGF 240

Query: 840  VQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAE-HHVATLSGH 1016
            VQ+WD    K+L  +  H+ARVG+L WN+  L            D+R         L GH
Sbjct: 241  VQIWDAAAGKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGH 300

Query: 1017 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 1196
             QEVCGL+W+ D + LASGGNDN + VW          P+Q +T+H  AVKA+AW P Q 
Sbjct: 301  RQEVCGLKWSTDHQLLASGGNDNKLLVW----NHSSLSPVQQYTEHLAAVKAIAWSPHQH 356

Query: 1197 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGFAQNQLGXL 1376
             +LA+GGGT+DR IR WN  +G  L  +D   QVC++ WS +  EL+S HG++QNQ+   
Sbjct: 357  GLLASGGGTADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVW 416

Query: 1377 EVPTM 1391
            + P++
Sbjct: 417  KYPSL 421


>ref|XP_868549.1| PREDICTED: similar to Fizzy-related protein homolog (Fzr) (Cdh1/Hct1
            homolog) isoform 4 [Canis familiaris].
          Length = 487

 Score =  241 bits (614), Expect = 2e-63
 Identities = 154/431 (35%), Positives = 223/431 (51%), Gaps = 55/431 (12%)
 Frame = +3

Query: 264  RTPGKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWA 443
            RT   +NS + ++PSK G DR+IP R+ +   V +F    EN+   SQ    K+     A
Sbjct: 9    RTLTPANSPV-SSPSKHG-DRFIPSRAGANWSV-NFHRINENEKSPSQNRKAKD-----A 60

Query: 444  LNLNGFD------VEEAKILRLSGKPQNAPEGYQNRLKV------------LYSQKATPG 569
             + NG D      + + ++L    +    P+    RL+             L +++++P 
Sbjct: 61   TSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRSSPD 120

Query: 570  ----------------------SSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNV 683
                                  S RK  R I  +P ++LDAPE+++D+YLNLVDWSS NV
Sbjct: 121  DGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNV 180

Query: 684  LAVALDNSVYLWSASSGDIL--------------QLLQMEQPGDYVSSVAWIKEGNYLAV 821
            L+V L   VYLWSA +  ++              +L  +   GD V+SV W + GN +AV
Sbjct: 181  LSVGLGTCVYLWSACTSQLVPCTHDMVLCHPGVTRLCDLSVEGDSVTSVGWSERGNLVAV 240

Query: 822  GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAE-HHV 998
            GT    VQ+WD    K+L  +  H+ARVG+L WN+  L            D+R       
Sbjct: 241  GTHKGFVQIWDAAAGKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSE 300

Query: 999  ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 1178
              L GH QEVCGL+W+ D + LASGGNDN + VW          P+Q +T+H  AVKA+A
Sbjct: 301  RRLQGHRQEVCGLKWSTDHQLLASGGNDNKLLVW----NHSSLSPVQQYTEHLAAVKAIA 356

Query: 1179 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGFAQ 1358
            W P Q  +LA+GGGT+DR IR WN  +G  L  +D   QVC++ WS +  EL+S HG++Q
Sbjct: 357  WSPHQHGLLASGGGTADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQ 416

Query: 1359 NQLGXLEVPTM 1391
            NQ+   + P++
Sbjct: 417  NQILVWKYPSL 427


>ref|XP_535236.2| PREDICTED: similar to cell division cycle 20 homolog [Canis
            familiaris].
          Length = 519

 Score =  232 bits (591), Expect = 7e-61
 Identities = 115/246 (46%), Positives = 161/246 (65%), Gaps = 1/246 (0%)
 Frame = +3

Query: 633  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNY 812
            +RNDYYLN++DW+  N++AVAL +SV++W+  + ++++ + +     Y+SSV+WIK+GN 
Sbjct: 228  LRNDYYLNILDWNFRNLVAVALGSSVFIWTGEN-NVIENIDLSLNCSYISSVSWIKDGNC 286

Query: 813  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEH 992
            LAVGTS  EVQLWDV  +KRLRNM  H + VG+L WN  IL            DVR A+H
Sbjct: 287  LAVGTSEGEVQLWDVVTKKRLRNMLGHLSVVGALSWNHCILSSGSRLGRVYHHDVREAQH 346

Query: 993  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG-EGGWVPLQTFTQHQGAVK 1169
            HV +L  H Q VC L+W+PDGR L+SG +D L+ +WP  PG      PL+  +Q   AVK
Sbjct: 347  HVGSLH-HKQAVCALKWSPDGRLLSSGCSDGLLAIWPHDPGVRTQTQPLKVISQ-PTAVK 404

Query: 1170 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHG 1349
            A+ WCPWQS VLA GGG  D H+RI ++ +G  +     + Q+CS+LW P  +E+ +G G
Sbjct: 405  AMDWCPWQSAVLAVGGGMRDGHLRILDINTGRSIQTPSTNSQICSLLWLPKTKEIATGQG 464

Query: 1350 FAQNQL 1367
              QN +
Sbjct: 465  TPQNDV 470


>ref|XP_868541.1| PREDICTED: similar to Fizzy-related protein homolog (Fzr) (Cdh1/Hct1
            homolog) isoform 2 [Canis familiaris].
          Length = 418

 Score =  191 bits (486), Expect = 1e-48
 Identities = 133/416 (31%), Positives = 200/416 (48%), Gaps = 40/416 (9%)
 Frame = +3

Query: 264  RTPGKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWA 443
            RT   +NS + ++PSK G DR+IP R+ +   V +F    EN+   SQ    K+     A
Sbjct: 9    RTLTPANSPV-SSPSKHG-DRFIPSRAGANWSV-NFHRINENEKSPSQNRKAKD-----A 60

Query: 444  LNLNGFD------VEEAKILRLSGKPQNAPEGYQNRLKV------------LYSQKATPG 569
             + NG D      + + ++L    +    P+    RL+             L +++++P 
Sbjct: 61   TSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRSSPD 120

Query: 570  ----------------------SSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNV 683
                                  S RK  R I  +P ++LDAPE+++D+YLNLVDWSS NV
Sbjct: 121  DGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNV 180

Query: 684  LAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQ 863
            L+V L   VYLWSA +  + +L  +   GD V+SV W          +   +++   +Q 
Sbjct: 181  LSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGW----------SERRDIRTPPLQS 230

Query: 864  QKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEHHVATLSGHSQEVCGLRW 1043
            ++RL+                                            GH QEVCGL+W
Sbjct: 231  ERRLQ--------------------------------------------GHRQEVCGLKW 246

Query: 1044 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 1223
            + D + LASGGNDN + VW          P+Q +T+H  AVKA+AW P Q  +LA+GGGT
Sbjct: 247  STDHQLLASGGNDNKLLVW----NHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGT 302

Query: 1224 SDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGFAQNQLGXLEVPTM 1391
            +DR IR WN  +G  L  +D   QVC++ WS +  EL+S HG++QNQ+   + P++
Sbjct: 303  ADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSL 358


>ref|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1 (Katanin
            p80 subunit B1) (p80 katanin) isoform 2 [Canis
            familiaris].
          Length = 655

 Score = 80.5 bits (197), Expect = 4e-15
 Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 5/230 (2%)
 Frame = +3

Query: 669  SSGNVLAVALDNS-VYLWSASSGD-ILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEV 842
            +SG +LA   D+  V LWS +  + I+ L     P   V SV        +  G+ S  +
Sbjct: 31   ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP---VESVRLNTPEELIVAGSQSGSI 87

Query: 843  QLWDVQQQKRLRNMTSHSARVGSLCWNSY--ILXXXXXXXXXXXXDVRVAEHHVATLSGH 1016
            ++WD++  K LR +  H A + SL ++ Y   +            D+R  +  V    GH
Sbjct: 88   RVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVFRYRGH 146

Query: 1017 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 1196
            SQ V  LR++PDG+ LAS  +D+ V +W    G+     +  F  H G V  V + P   
Sbjct: 147  SQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK----MMSEFPGHTGPVNVVEFHP--- 199

Query: 1197 NVLATGGGTSDRHIRIWNVCSGACLSAVDAH-FQVCSILWSPYXQELISG 1343
            N      G+SDR IR W++     +S ++     V S+L++P    L SG
Sbjct: 200  NEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSG 249


>ref|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1 (Katanin
            p80 subunit B1) (p80 katanin) isoform 1 [Canis
            familiaris].
          Length = 655

 Score = 80.5 bits (197), Expect = 4e-15
 Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 5/230 (2%)
 Frame = +3

Query: 669  SSGNVLAVALDNS-VYLWSASSGD-ILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEV 842
            +SG +LA   D+  V LWS +  + I+ L     P   V SV        +  G+ S  +
Sbjct: 31   ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP---VESVRLNTPEELIVAGSQSGSI 87

Query: 843  QLWDVQQQKRLRNMTSHSARVGSLCWNSY--ILXXXXXXXXXXXXDVRVAEHHVATLSGH 1016
            ++WD++  K LR +  H A + SL ++ Y   +            D+R  +  V    GH
Sbjct: 88   RVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVFRYRGH 146

Query: 1017 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 1196
            SQ V  LR++PDG+ LAS  +D+ V +W    G+     +  F  H G V  V + P   
Sbjct: 147  SQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK----MMSEFPGHTGPVNVVEFHP--- 199

Query: 1197 NVLATGGGTSDRHIRIWNVCSGACLSAVDAH-FQVCSILWSPYXQELISG 1343
            N      G+SDR IR W++     +S ++     V S+L++P    L SG
Sbjct: 200  NEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSG 249


>ref|XP_532038.2| PREDICTED: similar to PRP4 pre-mRNA processing factor 4 homolog
            [Canis familiaris].
          Length = 521

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 2/212 (0%)
 Frame = +3

Query: 660  VDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAE 839
            +D    N+ + A D SV LWS  S +   +  +E     V+ V W   G +L        
Sbjct: 288  LDQKDVNLASCAADGSVKLWSLDSDE--PVADIEGHTVRVARVMWHPSGRFLGTTCYDRS 345

Query: 840  VQLWDVQQQKRLRNMTSHSARVGSLCWNS--YILXXXXXXXXXXXXDVRVAEHHVATLSG 1013
             +LWD++ Q+ + +   HS  V  + ++    +             D+R     +  L G
Sbjct: 346  WRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRC-IMFLEG 404

Query: 1014 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 1193
            H +E+ G+ ++P+G H+A+G  DN   VW           + T   HQ  V  V + P  
Sbjct: 405  HLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRR----CVYTIPAHQNLVTGVKFEPIH 460

Query: 1194 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 1289
             N L T  G  D   +IW     + L  +  H
Sbjct: 461  GNFLLT--GAYDNTAKIWTHPGWSPLKTLAGH 490


>ref|XP_853719.1| PREDICTED: similar to transducin (beta)-like 1 X-linked [Canis
            familiaris].
          Length = 630

 Score = 69.3 bits (168), Expect = 8e-12
 Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 10/238 (4%)
 Frame = +3

Query: 660  VDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSS 833
            +DW+S G +LA  + D    +W+        L Q + P   + ++ W K+GNY+      
Sbjct: 347  LDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGP---IFALKWNKKGNYILSAGVD 403

Query: 834  AEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEHHVATLSG 1013
                +WD    +  +    HSA    + W +                    +  V T  G
Sbjct: 404  KTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQG 463

Query: 1014 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW- 1190
            H+ EV  ++W P G  LAS  +D  + +W           +     H   +  + W P  
Sbjct: 464  HTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD----TCVHDLQAHSKEIYTIKWSPTG 519

Query: 1191 ------QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQ-VCSILWSPYXQELISG 1343
                   SN++     + D  +R+W+V  G C+  +  H + V S+ +SP  + L SG
Sbjct: 520  PATSNPNSNIM-LASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASG 576


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,000,386
Number of extensions: 1987673
Number of successful extensions: 11067
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 10534
Number of HSP's successfully gapped: 65
Length of query: 463
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 357
Effective length of database: 15,340,888
Effective search space: 5476697016
Effective search space used: 5476697016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013488
         (1391 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001116566.1| cell division cycle protein 20 homolog [Sus ...   847   0.0  
Alignment   gi|NP_001012296.1| fizzy-related protein homolog [Sus scrofa].       250   2e-66
Alignment   gi|XP_003361142.1| PREDICTED: cell division cycle protein 20 ho...   226   2e-59
Alignment   gi|XP_003361493.1| PREDICTED: fizzy-related protein homolog [Su...   164   1e-40
Alignment   gi|XP_003360272.1| PREDICTED: f-box-like/WD repeat-containing p...    72   1e-12
Alignment   gi|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus ...    66   5e-11
Alignment   gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S...    65   9e-11
Alignment   gi|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [...    62   6e-10
Alignment   gi|XP_003353667.1| PREDICTED: LOW QUALITY PROTEIN: u4/U6 small ...    62   1e-09
Alignment   gi|XP_003133375.2| PREDICTED: WD repeat-containing protein 17 [...    59   6e-09

>ref|NP_001116566.1| cell division cycle protein 20 homolog [Sus scrofa].
          Length = 499

 Score =  847 bits (2187), Expect = 0.0
 Identities = 412/433 (95%), Positives = 415/433 (95%)
 Frame = +3

Query: 93   MAQFVFESDLHSLLQLDAPIPNAPPARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTP 272
            MAQFVFESDLHSLLQLDAPIPNAPPARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTP
Sbjct: 1    MAQFVFESDLHSLLQLDAPIPNAPPARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTP 60

Query: 273  GKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALNL 452
            GKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALNL
Sbjct: 61   GKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALNL 120

Query: 453  NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE 632
            NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE
Sbjct: 121  NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE 180

Query: 633  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNY 812
            IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNY
Sbjct: 181  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNY 240

Query: 813  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEH 992
            LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYIL            DVRVAEH
Sbjct: 241  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILSSGSRSGHIHHHDVRVAEH 300

Query: 993  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 1172
            HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA
Sbjct: 301  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 360

Query: 1173 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGF 1352
            VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH QVCSILWSP+ +ELISGHGF
Sbjct: 361  VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 420

Query: 1353 AQNQLGXLEVPTM 1391
            AQNQL   + PTM
Sbjct: 421  AQNQLVIWKYPTM 433


>ref|NP_001012296.1| fizzy-related protein homolog [Sus scrofa].
          Length = 493

 Score =  250 bits (638), Expect = 2e-66
 Identities = 154/417 (36%), Positives = 222/417 (53%), Gaps = 41/417 (9%)
 Frame = +3

Query: 264  RTPGKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWA 443
            RT   +NS + ++PSK G DR+IP R+ +   V +F    EN+   SQ    K+     A
Sbjct: 29   RTLTPANSPV-SSPSKHG-DRFIPSRAGANWSV-NFHRINENEKSPSQNRKAKD-----A 80

Query: 444  LNLNGFD------VEEAKILRLSGKPQNAPEGYQNRLKV------------LYSQKATPG 569
             + NG D      + + ++L    +    P+    RL+             L +++++P 
Sbjct: 81   TSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPERKGLFTYSLSTKRSSPD 140

Query: 570  ----------------------SSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNV 683
                                  S RK  R I  +P ++LDAPE+++D+YLNLVDWSS NV
Sbjct: 141  DGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNV 200

Query: 684  LAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQ 863
            L+V L   VYLWSA +  + +L  +   GD V+SV W + GN +AVGT    VQ+WD   
Sbjct: 201  LSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAA 260

Query: 864  QKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAE-HHVATLSGHSQEVCGLR 1040
             K+L  +  H+ARVG+L WN+  L            D+R         L GH QEVCGL+
Sbjct: 261  GKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLK 320

Query: 1041 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 1220
            W+ D + LASGGNDN + VW          P+Q +T+H  AVKA+AW P Q  +LA+GGG
Sbjct: 321  WSTDHQLLASGGNDNKLLVW----NHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGG 376

Query: 1221 TSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGFAQNQLGXLEVPTM 1391
            T+DR IR WN  +G  L  +D   QVC++ WS +  EL+S HG++QNQ+   + P++
Sbjct: 377  TADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSL 433


>ref|XP_003361142.1| PREDICTED: cell division cycle protein 20 homolog B [Sus scrofa].
          Length = 500

 Score =  226 bits (576), Expect = 2e-59
 Identities = 111/262 (42%), Positives = 157/262 (59%)
 Frame = +3

Query: 606  PDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSS 785
            P+  +     RN YYLN++DW+  N++A+AL +SV++W+  S   ++ + +    +YVSS
Sbjct: 200  PEVKIHLXXFRNGYYLNILDWNFQNLVAIALGSSVHIWNGESHSGIENIDLSLTCNYVSS 259

Query: 786  VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXX 965
            V+WI++GN LAVGTS  EVQLWDV  +KRLRNM  H + VG+L WN  IL          
Sbjct: 260  VSWIEKGNCLAVGTSEGEVQLWDVVTKKRLRNMLGHLSVVGALSWNHCILSSGSRLGRVY 319

Query: 966  XXDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF 1145
              DVRVA+H V TL  H Q VC L+W+PDGR L+SG +D L+ +WP  PG          
Sbjct: 320  HHDVRVAQHRVGTLH-HKQAVCALKWSPDGRLLSSGCSDGLLTIWPHDPGVTAQGHALKV 378

Query: 1146 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYX 1325
                 AVKAV WCPW+S VLA GGG  D H+ I ++ +G  +     + Q+CS++W P  
Sbjct: 379  IPQPTAVKAVDWCPWKSEVLAVGGGMKDGHLHILDINTGQSIQTPSTNSQICSLVWLPKT 438

Query: 1326 QELISGHGFAQNQLGXLEVPTM 1391
            +E+ +G G  +N +     P +
Sbjct: 439  KEIATGQGSPKNDVTVWACPAL 460


>ref|XP_003361493.1| PREDICTED: fizzy-related protein homolog [Sus scrofa].
          Length = 436

 Score =  164 bits (415), Expect = 1e-40
 Identities = 122/371 (32%), Positives = 178/371 (47%), Gaps = 6/371 (1%)
 Frame = +3

Query: 297  TTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALNLNGFDVEEA 476
            ++PSK G DR+IP R           L +EN+   SQ    K+     A + NG      
Sbjct: 39   SSPSKHG-DRFIPSRXXXXXXXXXXXL-QENEKSPSQNRKAKD-----ATSDNGKG-NLG 90

Query: 477  KILR--LSGKPQNAPEGYQ----NRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIR 638
            ++LR  LS K  +  +G      +   V    +    S RK  R I  +P ++LDAPE++
Sbjct: 91   QVLRYSLSTKRSSPDDGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQ 150

Query: 639  NDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLA 818
            +D+YLNLVDWSS NVL+V L   VYLWSA +  + +L  +   GD V+SV W +  + LA
Sbjct: 151  DDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERVSTLA 210

Query: 819  VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEHHV 998
            +   S   +L      K+L  +  H+ARVG+L WN+  L            D+R      
Sbjct: 211  L--FSCWAKLAQGAAGKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPP--- 265

Query: 999  ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 1178
                               R L   G   L+ VW          P+Q +T+H  AVKA+A
Sbjct: 266  ---------------LQSERRLYDKGALGLL-VW----NHSSLSPVQQYTEHLAAVKAIA 305

Query: 1179 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGFAQ 1358
            W P Q  +LA+GGGT+          +G  L  +D   QVC++ WS +  EL+S HG++Q
Sbjct: 306  WSPHQHGLLASGGGTAXXXXXXXXXLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQ 365

Query: 1359 NQLGXLEVPTM 1391
            NQ+   + P++
Sbjct: 366  NQILVWKYPSL 376


>ref|XP_003360272.1| PREDICTED: f-box-like/WD repeat-containing protein TBL1X-like [Sus
            scrofa].
          Length = 529

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 86/423 (20%), Positives = 158/423 (37%), Gaps = 15/423 (3%)
 Frame = +3

Query: 120  LHSLLQLDAPIPNAPPARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTPGKSNSKMQT 299
            + SL  +DA +P+    R Q   ++ A    S   AA  + +A       P  + +  Q 
Sbjct: 78   IESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAAAAAATAAPAAPAAAAAVSQQ 137

Query: 300  TPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALNLNGFDV---- 467
             P K G        + +  E  +  ++  ++P       +    KA  L  +  +V    
Sbjct: 138  NPPKNG------EATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICA 191

Query: 468  -EEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRND 644
                  L  SG   +    +        ++ +  GS++   R+   + +   D P  ++ 
Sbjct: 192  WNPVSDLLASGSGDSTARIWN------LNENSNGGSTQLVLRHC--IREGGHDVPSNKD- 242

Query: 645  YYLNLVDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLA 818
              +  +DW+S G +LA  + D    +W+        L Q + P   + ++ W K+GNY+ 
Sbjct: 243  --VTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGP---IFALKWNKKGNYIL 297

Query: 819  VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEHHV 998
                     +WD    +  +    HSA    + W +                    +  V
Sbjct: 298  SAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPV 357

Query: 999  ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 1178
             T  GH+ EV  ++W P G  LAS  +D  + +W           +     H   +  + 
Sbjct: 358  KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD----TCVHDLQAHSKEIYTIK 413

Query: 1179 WCPW-------QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQ-VCSILWSPYXQEL 1334
            W P         SN++     + D  +R+W+V  G C+  +  H + V S+ +SP  + L
Sbjct: 414  WSPTGPATSNPNSNIM-LASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYL 472

Query: 1335 ISG 1343
             SG
Sbjct: 473  ASG 475



 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
 Frame = +3

Query: 777  VSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWN----------- 923
            V+++ W   G  LA  +    +++W ++Q   + ++ +HS  + ++ W+           
Sbjct: 367  VNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNS 426

Query: 924  SYILXXXXXXXXXXXXDVR--VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 1097
            + +L            DV   V  H   TL+ H + V  + ++PDG++LASG  D  V++
Sbjct: 427  NIMLASASFDSTVRLWDVERGVCIH---TLTKHQEPVYSVAFSPDGKYLASGSFDKCVHI 483

Query: 1098 WPSAPG 1115
            W +  G
Sbjct: 484  WNTQSG 489


>ref|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus scrofa].
          Length = 485

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
 Frame = +3

Query: 699  DNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 878
            D +++LWS +  D   L +M      ++ V +  +   +A  +    ++LWD +  K L 
Sbjct: 350  DFTLFLWSPAE-DKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLA 408

Query: 879  NMTSHSARVGSLCWN--SYILXXXXXXXXXXXXDVRVAEHHVATLSGHSQEVCGLRWAPD 1052
            ++  H A V  + W+  S +L            DV+ A+   A L GH+ EV  + W+PD
Sbjct: 409  SLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVK-AQKLAADLPGHADEVYAVDWSPD 467

Query: 1053 GRHLASGGNDNLVNVW 1100
            G+ +ASGG D  + +W
Sbjct: 468  GQRVASGGKDKCLRIW 483



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 3/188 (1%)
 Frame = +3

Query: 756  MEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYIL 935
            +E   + V SVA+   G YLA G+    V+ WD+  +      T H              
Sbjct: 110  LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTE------TPH-------------- 149

Query: 936  XXXXXXXXXXXXDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-PSAP 1112
                                  T  GH   V  + W+PDG+ LASG  +  + +W PS  
Sbjct: 150  ---------------------FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTG 188

Query: 1113 GEGGWVPLQTFTQHQGAVKAVAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDA 1286
             + G    +    H   + A++W P  +N         + D  +R+W+  +G C   +  
Sbjct: 189  KQVG----RALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTG 244

Query: 1287 HFQVCSIL 1310
            H Q  + L
Sbjct: 245  HTQSVTCL 252



 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
 Frame = +3

Query: 996  VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 1175
            +A ++GH   +  + ++PD R +AS   D  + +W    G+     L +   H  AV  +
Sbjct: 365  LARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGK----YLASLRGHVAAVYQI 420

Query: 1176 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHF-QVCSILWSPYXQELISG 1343
            AW    S +L +  G+SD  +++W+V +    + +  H  +V ++ WSP  Q + SG
Sbjct: 421  AWSA-DSRLLVS--GSSDSTLKVWDVKAQKLAADLPGHADEVYAVDWSPDGQRVASG 474


>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
          Length = 334

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 3/200 (1%)
 Frame = +3

Query: 699  DNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 878
            D  + +W A  G   + +   + G  +S VAW  + N L   +    +++WDV   K L+
Sbjct: 66   DKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 123

Query: 879  NMTSHSARVGSLCWN--SYILXXXXXXXXXXXXDVRVAEHHVATLSGHSQEVCGLRWAPD 1052
             +  HS  V    +N  S ++            DV+  +  + TL  HS  V  + +  D
Sbjct: 124  TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRD 182

Query: 1053 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGGTSD 1229
            G  + S   D L  +W +A G+     L+T        V  V + P    +LA    T D
Sbjct: 183  GSLIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 235

Query: 1230 RHIRIWNVCSGACLSAVDAH 1289
              +++W+   G CL     H
Sbjct: 236  NTLKLWDYSKGKCLKTYTGH 255



 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 9/222 (4%)
 Frame = +3

Query: 660  VDWSSGNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSS 833
            V WSS + L V+   D ++ +W  SSG  L+ L+     +YV    +  + N +  G+  
Sbjct: 93   VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFD 150

Query: 834  AEVQLWDVQQQKRLRNMTSHSARVGSLCWN--SYILXXXXXXXXXXXXDVRVAEHHVATL 1007
              V++WDV+  K L+ + +HS  V ++ +N    ++            D    +     +
Sbjct: 151  ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 210

Query: 1008 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 1187
               +  V  ++++P+G+++ +   DN + +W  + G+     L+T+T H    K   +C 
Sbjct: 211  DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGH----KNEKYCI 262

Query: 1188 WQSNVLATGG-----GTSDRHIRIWNVCSGACLSAVDAHFQV 1298
            + +N   TGG     G+ D  + IWN+ +   +  +  H  V
Sbjct: 263  F-ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 303



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
 Frame = +3

Query: 1002 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 1181
            TL+GH++ V  ++++P+G  LAS   D L+ +W +  G+      +T + H+  +  VAW
Sbjct: 40   TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAW 95

Query: 1182 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQ-VCSILWSPYXQELISG 1343
                SN+L +   + D+ ++IW+V SG CL  +  H   V    ++P    ++SG
Sbjct: 96   SS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147



 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 4/192 (2%)
 Frame = +3

Query: 777  VSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCW--NSYILXXXXX 950
            VSSV +   G +LA  ++   +++W     K  + ++ H   +  + W  +S +L     
Sbjct: 48   VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107

Query: 951  XXXXXXXDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 1130
                   DV   +  + TL GHS  V    + P    + SG  D  V +W    G+    
Sbjct: 108  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK---- 162

Query: 1131 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHFQVCS 1304
             L+T   H   V AV +    S ++++   + D   RIW+  SG CL  +  D +  V  
Sbjct: 163  CLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219

Query: 1305 ILWSPYXQELIS 1340
            + +SP  + +++
Sbjct: 220  VKFSPNGKYILA 231


>ref|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [Sus scrofa].
          Length = 305

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
 Frame = +3

Query: 756  MEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWN--SY 929
            ++  G ++ S+A+  +G YLA G     + ++D+   K L  +  H+  + SL ++  S 
Sbjct: 144  LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 203

Query: 930  ILXXXXXXXXXXXXDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 1109
            +L            DV+ A +   TLSGH+  V  + + PD  H  S  +D  V VW   
Sbjct: 204  LLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW--- 259

Query: 1110 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 1250
               G    + TF  HQ  V  V +    S +++ G    D+ I I++
Sbjct: 260  -DVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG---DDQEIHIYD 302



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 50/251 (19%), Positives = 110/251 (43%), Gaps = 7/251 (2%)
 Frame = +3

Query: 609  DRILDAPEIRNDYYLNLVDWSSGNVLAVA----LDNSVYLWSASSGDILQLLQMEQPGDY 776
            D  LD       + L +V     + L +A    LD  + LW   +G   Q+  ++     
Sbjct: 51   DEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK--QIKSIDAGPVD 108

Query: 777  VSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWN--SYILXXXXX 950
              ++A+  +  YLA GT   +V ++ V+  K+  ++ +    + S+ ++     L     
Sbjct: 109  AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 168

Query: 951  XXXXXXXDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 1130
                   D+   +  + TL GH+  +  L ++PD + L +  +D  + ++          
Sbjct: 169  DGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG- 226

Query: 1131 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-SAVDAHFQVCSI 1307
               T + H   V  VA+CP  ++ +++   +SD+ +++W+V +  C+ +  D   QV  +
Sbjct: 227  ---TLSGHASWVLNVAFCPDDTHFVSS---SSDKSVKVWDVGTRTCVHTFFDHQDQVWGV 280

Query: 1308 LWSPYXQELIS 1340
             ++    +++S
Sbjct: 281  KYNGNGSKIVS 291


>ref|XP_003353667.1| PREDICTED: LOW QUALITY PROTEIN: u4/U6 small nuclear ribonucleoprotein
            Prp4-like [Sus scrofa].
          Length = 506

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 74/333 (22%), Positives = 128/333 (38%), Gaps = 23/333 (6%)
 Frame = +3

Query: 360  VASFLLSKENQPDNSQTPTKKEHQKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLK 539
            V +  L K  + D     +K+E+Q+ W            K+ RL     + P   + RL+
Sbjct: 155  VGTDALKKTKKDDEKSKKSKEEYQQTWYHE----GPNSLKVARLWIANYSLPRAMK-RLE 209

Query: 540  VLYSQKATPGSSRKTCRYIPSLPDRILD--APEIRNDYYLNLVDWS-SGNVLAVALDNSV 710
                 K  P ++R +         R L+    +I +D  ++   +S +  +LA A  + +
Sbjct: 210  EARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGL 269

Query: 711  Y-LWSASSGDILQLLQ-----------------MEQPGDYVSSVAWIKEGNYLAVGTSSA 836
              LWS    ++L  L+                 +E     V+ V W   G +L       
Sbjct: 270  CKLWSVPDCNLLHTLRGHNTNVGAIESDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDR 329

Query: 837  EVQLWDVQQQKRLRNMTSHSARVGSLCWNS--YILXXXXXXXXXXXXDVRVAEHHVATLS 1010
              +LWD++ Q+ + +   HS  V  + ++    +             D+R     +  L 
Sbjct: 330  SWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRC-IMFLE 388

Query: 1011 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 1190
            GH +E+ G+ ++P+G H+A+G  DN   VW           + T   HQ  V  V + P 
Sbjct: 389  GHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRR----CVYTIPAHQNLVTGVKFEPI 444

Query: 1191 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 1289
              N L T  G  D   +IW     + L  +  H
Sbjct: 445  HGNFLLT--GAYDNTAKIWTHPGWSPLKTLAGH 475


>ref|XP_003133375.2| PREDICTED: WD repeat-containing protein 17 [Sus scrofa].
          Length = 1122

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 12/234 (5%)
 Frame = +3

Query: 678  NVLAVA-LDNSVYLWSASSGDILQLLQM-EQPGD--YVSSVAWIK-EGNYLAVGTSSAEV 842
            N+LA A  D ++ +W     DI  L  +   PG+   + S++W   + N +A  TS    
Sbjct: 207  NLLATASFDGTIKVW-----DINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGA 261

Query: 843  QLWDVQQQKRLRNMTSHSARVGSLC--WNSYILXXXXXXXXXXXXDVRVAEHHVATLSGH 1016
             +WD+++ K ++    H    G  C  W+                 +R  +  V     H
Sbjct: 262  FIWDIKKGKMVQRFNEHGKN-GIFCISWSHKDSKRIATCSGDGYCVIRTIDGKVLHKYKH 320

Query: 1017 SQEVCGLRWAPDGRHL-ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 1193
               V G  W+ + + + A+G  D  V V+  A       PL+ F+ H   V  V W P +
Sbjct: 321  PAAVFGCDWSQNNKDMIATGCEDKNVRVYYMATSSDQ--PLKVFSGHTEKVFHVRWSPLR 378

Query: 1194 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-FQVCSILWS---PYXQELISG 1343
              +L +G  + D  +RIW+    AC++ +  H   V  ++W+   PY   L+SG
Sbjct: 379  EGILCSG--SDDGSVRIWDYTQDACINILSGHTAPVRGLMWNTEIPYL--LVSG 428


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,809,019
Number of extensions: 1256047
Number of successful extensions: 6878
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 6604
Number of HSP's successfully gapped: 55
Length of query: 463
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,804,438
Effective search space: 3178402118
Effective search space used: 3178402118
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013488
         (1391 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_075712.2| cell division cycle protein 20 homolog [Mus mus...   806   0.0  
Alignment   gi|NP_062731.1| fizzy-related protein homolog [Mus musculus].        251   1e-66
Alignment   gi|XP_001473603.1| PREDICTED: cell division cycle protein 20 ho...   234   9e-62
Alignment   gi|XP_138861.6| PREDICTED: cell division cycle protein 20 homol...   231   1e-60
Alignment   gi|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus mus...    80   3e-15
Alignment   gi|NP_065626.1| F-box-like/WD repeat-containing protein TBL1X [...    69   7e-12
Alignment   gi|NP_081573.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Mus...    69   7e-12
Alignment   gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].        67   3e-11
Alignment   gi|NP_109657.2| F-box-like/WD repeat-containing protein TBL1XR1...    67   3e-11
Alignment   gi|NP_663406.2| notchless protein homolog 1 [Mus musculus].           64   3e-10

>ref|NP_075712.2| cell division cycle protein 20 homolog [Mus musculus].
          Length = 499

 Score =  806 bits (2081), Expect = 0.0
 Identities = 389/433 (89%), Positives = 403/433 (93%)
 Frame = +3

Query: 93   MAQFVFESDLHSLLQLDAPIPNAPPARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTP 272
            MAQFVFESDLHSLLQLDAPIPNAP ARWQRKAKEA GPAPSPMRAANRSHSAGRTPGRTP
Sbjct: 1    MAQFVFESDLHSLLQLDAPIPNAPVARWQRKAKEATGPAPSPMRAANRSHSAGRTPGRTP 60

Query: 273  GKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALNL 452
            GKS+SK+QTTPSKPGGDR+IP RSASQMEVASFLLSKENQP++  TPTKKEHQKAW+LNL
Sbjct: 61   GKSSSKVQTTPSKPGGDRFIPQRSASQMEVASFLLSKENQPEDRGTPTKKEHQKAWSLNL 120

Query: 453  NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE 632
            NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE
Sbjct: 121  NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE 180

Query: 633  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNY 812
            IRNDYYLNLVDWSSGNVLAVALDNSVYLW+A SGDILQLLQMEQPGDY+SSVAWIKEGNY
Sbjct: 181  IRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVAWIKEGNY 240

Query: 813  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEH 992
            LAVGTS+AEVQLWDVQQQKRLRNMTSHSARV SL WNSYIL            DVRVAEH
Sbjct: 241  LAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWNSYILSSGSRSGHIHHHDVRVAEH 300

Query: 993  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 1172
            HVATLSGHSQEVCGLRWAPDGRHLASGGNDN+VNVWPS PGE GW PLQTFTQHQGAVKA
Sbjct: 301  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWAPLQTFTQHQGAVKA 360

Query: 1173 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGF 1352
            VAWCPWQSN+LATGGGTSDRHIRIWNVCSGACLSAVD H QVCSILWSP+ +ELISGHGF
Sbjct: 361  VAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHYKELISGHGF 420

Query: 1353 AQNQLGXLEVPTM 1391
            AQNQL   + PTM
Sbjct: 421  AQNQLVIWKYPTM 433


>ref|NP_062731.1| fizzy-related protein homolog [Mus musculus].
          Length = 493

 Score =  251 bits (641), Expect = 1e-66
 Identities = 155/417 (37%), Positives = 222/417 (53%), Gaps = 41/417 (9%)
 Frame = +3

Query: 264  RTPGKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWA 443
            RT   +NS + ++PSK G DR+IP R+ +   V +F    EN+   SQ    K+     A
Sbjct: 29   RTLTPANSPV-SSPSKHG-DRFIPSRAGANWSV-NFHRINENEKSPSQNRKAKD-----A 80

Query: 444  LNLNGFD------VEEAKILRLSGKPQNAPEGYQNRLKV------------LYSQKATPG 569
             + NG D      + + ++L    +    P+    RL+             L S++++P 
Sbjct: 81   TSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEHKGLFTYSLSSKRSSPD 140

Query: 570  ----------------------SSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNV 683
                                  S RK  R I  +P ++LDAPE+++D+YLNLVDWSS NV
Sbjct: 141  DGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNV 200

Query: 684  LAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQ 863
            L+V L   VYLWSA +  + +L  +   GD V+SV W + GN +AVGT    VQ+WD   
Sbjct: 201  LSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAA 260

Query: 864  QKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAE-HHVATLSGHSQEVCGLR 1040
             K+L  +  H+ARVG+L WN+  L            D+R         L GH QEVCGL+
Sbjct: 261  GKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLK 320

Query: 1041 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 1220
            W+ D + LASGGNDN + VW          P+Q +T+H  AVKA+AW P Q  +LA+GGG
Sbjct: 321  WSTDHQLLASGGNDNKLLVW----NHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGG 376

Query: 1221 TSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGFAQNQLGXLEVPTM 1391
            T+DR IR WN  +G  L  +D   QVC++ WS +  EL+S HG++QNQ+   + P++
Sbjct: 377  TADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSL 433


>ref|XP_001473603.1| PREDICTED: cell division cycle protein 20 homolog B [Mus musculus].
          Length = 536

 Score =  234 bits (598), Expect = 9e-62
 Identities = 154/464 (33%), Positives = 231/464 (49%), Gaps = 27/464 (5%)
 Frame = +3

Query: 81   DAAPMAQFVFESDLHSLLQLDAPIPNAP-PARWQ---------RKAKEAAGPAPSPMRAA 230
            D+  +    F+S+    L  + P+ ++P   RWQ           + E   P+ +P   A
Sbjct: 93   DSVAVTYSSFKSNFVKRLSAEIPVASSPITTRWQLSPARDPESSSSVEEGPPSHTPESLA 152

Query: 231  N-------------RSHSAGRTPGRTPGKS---NSKMQTTPSKPGGDRYIPHRSASQMEV 362
            +             RSH+       + G S   NS ++   +   GDR      A++ + 
Sbjct: 153  SGLKITPAADTLTLRSHNKNSPKTLSKGSSEVNNSTLRFCKTPLAGDRGWKENLATKGQR 212

Query: 363  ASFLLSKENQPDNSQTPTKKEHQKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKV 542
                    NQP ++Q   K   Q    ++L     EE++ +R   +     E Y  RL  
Sbjct: 213  CL------NQPFSTQ---KGAQQIDGKMHL----CEESRCVRTGCRFGARDEFYLRRLSS 259

Query: 543  LYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWS 722
            +Y           TC+     P+  +    +RNDYYLN +DWSS N++AVAL  SVY+W+
Sbjct: 260  VY---------HSTCQ-----PEVKIHLTGLRNDYYLNTLDWSSQNLVAVALGTSVYIWN 305

Query: 723  ASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 902
              +   ++ + +     YVSSV W++EG+ LAVGTS  EVQLWD   +K+LRN+  H + 
Sbjct: 306  GQNHSWIENIDLSVCCHYVSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNLHGHLSV 365

Query: 903  VGSLCWNSYILXXXXXXXXXXXXDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND 1082
            VG+L WN   L            DVRVA+H V TL  H + VC L+W+PDGR L+SG ND
Sbjct: 366  VGALSWNHCTLSSGSRLGRVHHHDVRVAQHRVGTLY-HKEAVCSLKWSPDGRLLSSGCND 424

Query: 1083 NLVNVWPSAPGEG-GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 1259
             L+ +WP  PG G   +PL+   Q   AVKA+ WCPWQS VLA GGG  D  + + ++ +
Sbjct: 425  GLLTIWPHDPGAGVQGLPLKVIPQ-STAVKAMEWCPWQSEVLAVGGGVKDGCLHVLDINT 483

Query: 1260 GACLSAVDAHFQVCSILWSPYXQELISGHGFAQNQLGXLEVPTM 1391
            G  +       Q+CS++W P  +E+++G G  +N +     PT+
Sbjct: 484  GKNIQTPSTQSQICSLIWLPKTKEIVTGQGAPKNDVALWTCPTL 527


>ref|XP_138861.6| PREDICTED: cell division cycle protein 20 homolog B [Mus musculus].
          Length = 567

 Score =  231 bits (589), Expect = 1e-60
 Identities = 153/464 (32%), Positives = 229/464 (49%), Gaps = 27/464 (5%)
 Frame = +3

Query: 81   DAAPMAQFVFESDLHSLLQLDAPIPNAP-PARWQ---------RKAKEAAGPAPSPMRAA 230
            D+  +    F+S+    L  + P+ ++P   RWQ           + E   P+ +P   A
Sbjct: 93   DSVAVTYSSFKSNFVKRLSAEIPVASSPITTRWQLSPARDPESSSSVEEGPPSHTPESLA 152

Query: 231  N-------------RSHSAGRTPGRTPGKS---NSKMQTTPSKPGGDRYIPHRSASQMEV 362
            +             RSH+       + G S   NS ++   +   GDR      A++ + 
Sbjct: 153  SGLKITPAADTLTLRSHNKNSPKTLSKGSSEVNNSTLRFCKTPLAGDRGWKENLATKGQR 212

Query: 363  ASFLLSKENQPDNSQTPTKKEHQKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKV 542
                    NQP ++Q   K   Q    ++L     EE++ +R   +     E Y  R   
Sbjct: 213  CL------NQPFSTQ---KGAQQIDGKMHL----CEESRCVRTGCRFGARDEFYLRRFSG 259

Query: 543  LYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWS 722
            +Y           TC+     P+  +    +RNDYYLN +DWSS N++AVAL  SVY+W+
Sbjct: 260  VY---------HSTCQ-----PEVKIHLTGLRNDYYLNTLDWSSQNLVAVALGTSVYIWN 305

Query: 723  ASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 902
              +   ++ + +     YVSSV W++EG+ LAVGTS  EVQLWD   +K+LRN+  H + 
Sbjct: 306  GQNHSWIENIDLSVCCHYVSSVTWMREGSCLAVGTSEGEVQLWDAITKKQLRNLHGHLSV 365

Query: 903  VGSLCWNSYILXXXXXXXXXXXXDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND 1082
            VG+L WN   L            DVRVA+H V TL  H + VC L+W+PDGR L+SG ND
Sbjct: 366  VGALSWNHCTLSSGSRLGRVHHHDVRVAQHRVGTLY-HKEAVCSLKWSPDGRLLSSGCND 424

Query: 1083 NLVNVWPSAPGEG-GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 1259
             L+ +WP  PG G   +PL+   Q   AVKA+ WCPWQS VLA GGG  D  + + ++ +
Sbjct: 425  GLLTIWPHDPGAGVQGLPLKVIPQ-STAVKAMEWCPWQSEVLAVGGGVKDGCLHVLDINT 483

Query: 1260 GACLSAVDAHFQVCSILWSPYXQELISGHGFAQNQLGXLEVPTM 1391
            G  +       Q+CS++W P  +E+ +G G  +N +     PT+
Sbjct: 484  GKNIQTPSTQSQICSLIWLPKTKEIATGQGAPKNDVALWTCPTL 527


>ref|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus musculus].
          Length = 658

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 5/230 (2%)
 Frame = +3

Query: 669  SSGNVLAVALDNS-VYLWSASSGD-ILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEV 842
            +SG +LA   D+  V LWS +  + I+ L     P   V SV        +  G+ S  +
Sbjct: 31   ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP---VESVRLNTPEELIVAGSQSGSI 87

Query: 843  QLWDVQQQKRLRNMTSHSARVGSLCWNSY--ILXXXXXXXXXXXXDVRVAEHHVATLSGH 1016
            ++WD++  K LR +  H A + SL ++ Y   +            D+R  +  V    GH
Sbjct: 88   RVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVFRYRGH 146

Query: 1017 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 1196
            SQ V  LR++PDG+ LAS  +D+ V +W    G+     +  F  H G V  V + P   
Sbjct: 147  SQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK----MMSEFPGHTGPVNVVEFHP--- 199

Query: 1197 NVLATGGGTSDRHIRIWNVCSGACLSAVDAH-FQVCSILWSPYXQELISG 1343
            N      G+SDR IR W++     +S ++     V S+L++P    L SG
Sbjct: 200  NEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSG 249


>ref|NP_065626.1| F-box-like/WD repeat-containing protein TBL1X [Mus musculus].
          Length = 527

 Score = 69.3 bits (168), Expect = 7e-12
 Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 10/238 (4%)
 Frame = +3

Query: 660  VDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSS 833
            +DW+S G +LA  + D    +W+        L Q + P   + ++ W K+GNY+      
Sbjct: 244  LDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGP---IFALKWNKKGNYILSAGVD 300

Query: 834  AEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEHHVATLSG 1013
                +WD    +  +    HSA    + W +                    +  V T  G
Sbjct: 301  KTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQG 360

Query: 1014 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW- 1190
            H+ EV  ++W P G  LAS  +D  + +W           +     H   +  + W P  
Sbjct: 361  HTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD----ACVHDLQAHSKEIYTIKWSPTG 416

Query: 1191 ------QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQ-VCSILWSPYXQELISG 1343
                   SN++     + D  +R+W+V  G C+  +  H + V S+ +SP  + L SG
Sbjct: 417  PATSNPNSNIM-LASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASG 473


>ref|NP_081573.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Mus musculus].
          Length = 521

 Score = 69.3 bits (168), Expect = 7e-12
 Identities = 53/212 (25%), Positives = 87/212 (41%), Gaps = 2/212 (0%)
 Frame = +3

Query: 660  VDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAE 839
            +D    N+ + A D SV LWS  S +   +  +E     V+ V W   G +L        
Sbjct: 288  LDQKDVNLASCAADGSVKLWSLDSDE--PVADIEGHTVRVARVMWHPSGRFLGTTCYDRS 345

Query: 840  VQLWDVQQQKRLRNMTSHSARVGSLCWNS--YILXXXXXXXXXXXXDVRVAEHHVATLSG 1013
             +LWD++ Q+ + +   HS  V  + ++    +             D+R     +  L G
Sbjct: 346  WRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRC-IMFLEG 404

Query: 1014 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 1193
            H +E+ G+ ++P+G H+A+G  DN   VW           + T   HQ  V  V + P  
Sbjct: 405  HLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRR----CVYTIPAHQNLVTGVKFEPIH 460

Query: 1194 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 1289
             + L T  G  D   +IW     + L  +  H
Sbjct: 461  GDFLLT--GAYDNTAKIWTHPGWSPLKTLAGH 490


>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
          Length = 334

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 5/248 (2%)
 Frame = +3

Query: 561  TPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWS-SGNVLAVA-LDNSVYLWSASSG 734
            TP SS    +  P  P+  L      +   ++ V +S +G  LA +  D  + +W A  G
Sbjct: 18   TPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 77

Query: 735  DILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL 914
               + +   + G  +S VAW  + N L   +    +++WDV   K L+ +  HS  V   
Sbjct: 78   KFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 135

Query: 915  CWN--SYILXXXXXXXXXXXXDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 1088
             +N  S ++            DV+  +  + TL  HS  V  + +  DG  + S   D L
Sbjct: 136  NFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 194

Query: 1089 VNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 1265
              +W +A G+     L+T        V  V + P    +LA    T D  +++W+   G 
Sbjct: 195  CRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNGKYILA---ATLDNTLKLWDYSKGK 247

Query: 1266 CLSAVDAH 1289
            CL     H
Sbjct: 248  CLKTYTGH 255



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
 Frame = +3

Query: 1002 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 1181
            TL+GH++ V  ++++P+G  LAS   D L+ +W +  G+      +T + H+  +  VAW
Sbjct: 40   TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAW 95

Query: 1182 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQ-VCSILWSPYXQELISG 1343
                SN+L +   + D+ ++IW+V SG CL  +  H   V    ++P    ++SG
Sbjct: 96   SS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147


>ref|NP_109657.2| F-box-like/WD repeat-containing protein TBL1XR1 [Mus musculus].
          Length = 514

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 89/425 (20%), Positives = 150/425 (35%), Gaps = 17/425 (4%)
 Frame = +3

Query: 120  LHSLLQLDAPIPNAPPARWQ----RKAKEAAGPAPSPMRAANRSHSAGRTPGRTPGKSNS 287
            + SL  +DA +P+    R Q    + A++ A  A +   A N+  SA        G+ N 
Sbjct: 78   IESLSLIDAVMPDVVQTRQQAYRDKLAQQHAAAAAAAAAATNQQGSAKNGENTANGEEN- 136

Query: 288  KMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWA----LNLN 455
                      G   I +     MEV   +    N+    +    +    AW     L  +
Sbjct: 137  ----------GAHTIANNHTDMMEVDGDVEIPSNKAVVLRGHESEVFICAWNPVSDLLAS 186

Query: 456  GFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEI 635
            G     A+I  LS    + P           +Q       R+  + +PS  D        
Sbjct: 187  GSGDSTARIWNLSENSTSGP-----------TQLVLRHCIREGGQDVPSNKD-------- 227

Query: 636  RNDYYLNLVDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGN 809
                 +  +DW+S G +LA  + D    +W+        L Q + P   + ++ W K+GN
Sbjct: 228  -----VTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGP---IFALKWNKKGN 279

Query: 810  YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAE 989
            ++          +WD    +  +    HSA    + W S                    +
Sbjct: 280  FILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQD 339

Query: 990  HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 1169
              + T  GH+ EV  ++W P G  LAS  +D  + +W           +     H   + 
Sbjct: 340  RPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDN----CVHDLQAHNKEIY 395

Query: 1170 AVAWCPWQSNV------LATGGGTSDRHIRIWNVCSGACLSAVDAHFQ-VCSILWSPYXQ 1328
             + W P           L     + D  +R+W+V  G C+  +  H + V S+ +SP  +
Sbjct: 396  TIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGR 455

Query: 1329 ELISG 1343
             L SG
Sbjct: 456  YLASG 460


>ref|NP_663406.2| notchless protein homolog 1 [Mus musculus].
          Length = 485

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
 Frame = +3

Query: 699  DNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 878
            D +++LWS +  D   L +M      ++ V +  +   +A  +    ++LWD +  K L 
Sbjct: 350  DFTLFLWSPAE-DKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLA 408

Query: 879  NMTSHSARVGSLCWN--SYILXXXXXXXXXXXXDVRVAEHHVATLSGHSQEVCGLRWAPD 1052
            ++  H A V  + W+  S +L            DV+ A+     L GH+ EV  + W+PD
Sbjct: 409  SLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVK-AQKLATDLPGHADEVYAVDWSPD 467

Query: 1053 GRHLASGGNDNLVNVW 1100
            G+ +ASGG D  + +W
Sbjct: 468  GQRVASGGKDKCLRIW 483



 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 47/185 (25%), Positives = 72/185 (38%), Gaps = 7/185 (3%)
 Frame = +3

Query: 756  MEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCW--NSY 929
            +E   + V SVA+   G YLA G+    V+ WD+  +        H   V S+ W  +  
Sbjct: 110  LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGK 169

Query: 930  ILXXXXXXXXXXXXDVRVAEHHVATLSGHSQEVCGLRWA-----PDGRHLASGGNDNLVN 1094
             L            D         TL+GHS+ + GL W      P+ R++AS   D  V 
Sbjct: 170  KLASGCKNGQVLLWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVR 229

Query: 1095 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 1274
            VW +  G       +  T H  +V  + W      +L +   + DR I++W    G    
Sbjct: 230  VWDTTAGRCE----RILTGHTQSVTCLRW--GGDGLLYS--ASQDRTIKVWRAHDGVLCR 281

Query: 1275 AVDAH 1289
             +  H
Sbjct: 282  TLQGH 286



 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
 Frame = +3

Query: 996  VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 1175
            +A ++GH   +  + ++PD R +AS   D  + +W    G+     L +   H  AV  +
Sbjct: 365  LARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGK----YLASLRGHVAAVYQI 420

Query: 1176 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHF-QVCSILWSPYXQELISG 1343
            AW    S +L +  G+SD  +++W+V +    + +  H  +V ++ WSP  Q + SG
Sbjct: 421  AWSA-DSRLLVS--GSSDSTLKVWDVKAQKLATDLPGHADEVYAVDWSPDGQRVASG 474


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,958,826
Number of extensions: 1618377
Number of successful extensions: 8702
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 8291
Number of HSP's successfully gapped: 59
Length of query: 463
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 358
Effective length of database: 12,463,779
Effective search space: 4462032882
Effective search space used: 4462032882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013488
         (1391 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001246.2| cell division cycle protein 20 homolog [Homo sa...   833   0.0  
Alignment   gi|NP_001129670.1| fizzy-related protein homolog isoform 1 [Hom...   250   3e-66
Alignment   gi|NP_057347.2| fizzy-related protein homolog isoform 2 [Homo s...   250   3e-66
Alignment   gi|NP_001163873.1| cell division cycle protein 20 homolog B iso...   239   4e-63
Alignment   gi|NP_689836.2| cell division cycle protein 20 homolog B isofor...   239   4e-63
Alignment   gi|NP_001139206.2| cell division cycle protein 20 homolog B iso...   190   3e-48
Alignment   gi|NP_001129669.1| fizzy-related protein homolog isoform 3 [Hom...   184   1e-46
Alignment   gi|NP_005877.2| katanin p80 WD40-containing subunit B1 [Homo sa...    80   3e-15
Alignment   gi|NP_599021.1| F-box-like/WD repeat-containing protein TBL1Y [...    71   2e-12
Alignment   gi|NP_599020.1| F-box-like/WD repeat-containing protein TBL1Y [...    71   2e-12

>ref|NP_001246.2| cell division cycle protein 20 homolog [Homo sapiens].
          Length = 499

 Score =  833 bits (2152), Expect = 0.0
 Identities = 404/433 (93%), Positives = 413/433 (95%)
 Frame = +3

Query: 93   MAQFVFESDLHSLLQLDAPIPNAPPARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTP 272
            MAQF FESDLHSLLQLDAPIPNAPPARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTP
Sbjct: 1    MAQFAFESDLHSLLQLDAPIPNAPPARWQRKAKEAAGPAPSPMRAANRSHSAGRTPGRTP 60

Query: 273  GKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALNL 452
            GKS+SK+QTTPSKPGGDRYIPHRSA+QMEVASFLLSKENQP+NSQTPTKKEHQKAWALNL
Sbjct: 61   GKSSSKVQTTPSKPGGDRYIPHRSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWALNL 120

Query: 453  NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE 632
            NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE
Sbjct: 121  NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE 180

Query: 633  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNY 812
            IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPG+Y+SSVAWIKEGNY
Sbjct: 181  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY 240

Query: 813  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEH 992
            LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL WNSYIL            DVRVAEH
Sbjct: 241  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 300

Query: 993  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 1172
            HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA
Sbjct: 301  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 360

Query: 1173 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGF 1352
            VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH QVCSILWSP+ +ELISGHGF
Sbjct: 361  VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 420

Query: 1353 AQNQLGXLEVPTM 1391
            AQNQL   + PTM
Sbjct: 421  AQNQLVIWKYPTM 433


>ref|NP_001129670.1| fizzy-related protein homolog isoform 1 [Homo sapiens].
          Length = 496

 Score =  250 bits (638), Expect = 3e-66
 Identities = 153/420 (36%), Positives = 218/420 (51%), Gaps = 41/420 (9%)
 Frame = +3

Query: 255  TPGRTPGKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQK 434
            TP  +P  S SK         GDR+IP R+ +   V +F    EN+   SQ    K+   
Sbjct: 32   TPASSPVSSPSKH--------GDRFIPSRAGANWSV-NFHRINENEKSPSQNRKAKD--- 79

Query: 435  AWALNLNGFD------VEEAKILRLSGKPQNAPEGYQNRLKV------------LYSQKA 560
              A + NG D      + + ++L    +    P+    RL+             L ++++
Sbjct: 80   --ATSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRS 137

Query: 561  TPG----------------------SSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSS 674
            +P                       S RK  R I  +P ++LDAPE+++D+YLNLVDWSS
Sbjct: 138  SPDDGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSS 197

Query: 675  GNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWD 854
             NVL+V L   VYLWSA +  + +L  +   GD V+SV W + GN +AVGT    VQ+WD
Sbjct: 198  LNVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWD 257

Query: 855  VQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAE-HHVATLSGHSQEVC 1031
                K+L  +  H+ARVG+L WN+  L            D+R         L GH QEVC
Sbjct: 258  AAAGKKLSMLEGHTARVGALAWNAEQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVC 317

Query: 1032 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 1211
            GL+W+ D + LASGGNDN + VW          P+Q +T+H  AVKA+AW P Q  +LA+
Sbjct: 318  GLKWSTDHQLLASGGNDNKLLVW----NHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLAS 373

Query: 1212 GGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGFAQNQLGXLEVPTM 1391
            GGGT+DR IR WN  +G  L  +D   QVC++ WS +  EL+S HG++QNQ+   + P++
Sbjct: 374  GGGTADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSL 433


>ref|NP_057347.2| fizzy-related protein homolog isoform 2 [Homo sapiens].
          Length = 493

 Score =  250 bits (638), Expect = 3e-66
 Identities = 153/420 (36%), Positives = 218/420 (51%), Gaps = 41/420 (9%)
 Frame = +3

Query: 255  TPGRTPGKSNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQK 434
            TP  +P  S SK         GDR+IP R+ +   V +F    EN+   SQ    K+   
Sbjct: 32   TPASSPVSSPSKH--------GDRFIPSRAGANWSV-NFHRINENEKSPSQNRKAKD--- 79

Query: 435  AWALNLNGFD------VEEAKILRLSGKPQNAPEGYQNRLKV------------LYSQKA 560
              A + NG D      + + ++L    +    P+    RL+             L ++++
Sbjct: 80   --ATSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRS 137

Query: 561  TPG----------------------SSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSS 674
            +P                       S RK  R I  +P ++LDAPE+++D+YLNLVDWSS
Sbjct: 138  SPDDGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSS 197

Query: 675  GNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWD 854
             NVL+V L   VYLWSA +  + +L  +   GD V+SV W + GN +AVGT    VQ+WD
Sbjct: 198  LNVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWD 257

Query: 855  VQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAE-HHVATLSGHSQEVC 1031
                K+L  +  H+ARVG+L WN+  L            D+R         L GH QEVC
Sbjct: 258  AAAGKKLSMLEGHTARVGALAWNAEQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVC 317

Query: 1032 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 1211
            GL+W+ D + LASGGNDN + VW          P+Q +T+H  AVKA+AW P Q  +LA+
Sbjct: 318  GLKWSTDHQLLASGGNDNKLLVW----NHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLAS 373

Query: 1212 GGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHGFAQNQLGXLEVPTM 1391
            GGGT+DR IR WN  +G  L  +D   QVC++ WS +  EL+S HG++QNQ+   + P++
Sbjct: 374  GGGTADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSL 433


>ref|NP_001163873.1| cell division cycle protein 20 homolog B isoform 3 [Homo sapiens].
          Length = 519

 Score =  239 bits (610), Expect = 4e-63
 Identities = 116/254 (45%), Positives = 163/254 (64%), Gaps = 1/254 (0%)
 Frame = +3

Query: 633  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNY 812
            +RNDYYLN++DWS  N++A+AL ++VY+W+  + + ++ + +    +Y+SSV+WIKEG  
Sbjct: 228  LRNDYYLNILDWSFQNLVAIALGSAVYIWNGENHNGIENIDLSLTCNYISSVSWIKEGTC 287

Query: 813  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEH 992
            LAVGTS  EVQLWDV  +KRLRNM  H + VG+L WN +IL            DVRVA+H
Sbjct: 288  LAVGTSEGEVQLWDVVTKKRLRNMLGHLSVVGALSWNHFILSSGSRLGRVYHHDVRVAQH 347

Query: 993  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-WVPLQTFTQHQGAVK 1169
            HV TL  H Q VC L+W+PDGR L+SG +D L+ +WP  PG      PL+  TQ   AVK
Sbjct: 348  HVGTLR-HKQAVCALKWSPDGRLLSSGCSDGLLTIWPHDPGASAQGQPLKVITQ-STAVK 405

Query: 1170 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHG 1349
            A+ WCPWQS VLA GGG  D  + I ++ +G  +     + Q+CS++W P  +E+ +G G
Sbjct: 406  AMDWCPWQSGVLAIGGGMKDGRLHILDINAGKSIQTPSTNSQICSLIWLPKTKEIATGQG 465

Query: 1350 FAQNQLGXLEVPTM 1391
              +N +     PT+
Sbjct: 466  TPKNDVTVWTCPTV 479


>ref|NP_689836.2| cell division cycle protein 20 homolog B isoform 1 [Homo sapiens].
          Length = 515

 Score =  239 bits (610), Expect = 4e-63
 Identities = 116/254 (45%), Positives = 163/254 (64%), Gaps = 1/254 (0%)
 Frame = +3

Query: 633  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNY 812
            +RNDYYLN++DWS  N++A+AL ++VY+W+  + + ++ + +    +Y+SSV+WIKEG  
Sbjct: 228  LRNDYYLNILDWSFQNLVAIALGSAVYIWNGENHNGIENIDLSLTCNYISSVSWIKEGTC 287

Query: 813  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEH 992
            LAVGTS  EVQLWDV  +KRLRNM  H + VG+L WN +IL            DVRVA+H
Sbjct: 288  LAVGTSEGEVQLWDVVTKKRLRNMLGHLSVVGALSWNHFILSSGSRLGRVYHHDVRVAQH 347

Query: 993  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-WVPLQTFTQHQGAVK 1169
            HV TL  H Q VC L+W+PDGR L+SG +D L+ +WP  PG      PL+  TQ   AVK
Sbjct: 348  HVGTLR-HKQAVCALKWSPDGRLLSSGCSDGLLTIWPHDPGASAQGQPLKVITQ-STAVK 405

Query: 1170 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQVCSILWSPYXQELISGHG 1349
            A+ WCPWQS VLA GGG  D  + I ++ +G  +     + Q+CS++W P  +E+ +G G
Sbjct: 406  AMDWCPWQSGVLAIGGGMKDGRLHILDINAGKSIQTPSTNSQICSLIWLPKTKEIATGQG 465

Query: 1350 FAQNQLGXLEVPTM 1391
              +N +     PT+
Sbjct: 466  TPKNDVTVWTCPTV 479


>ref|NP_001139206.2| cell division cycle protein 20 homolog B isoform 2 [Homo sapiens].
          Length = 477

 Score =  190 bits (482), Expect = 3e-48
 Identities = 94/207 (45%), Positives = 133/207 (64%), Gaps = 2/207 (0%)
 Frame = +3

Query: 633  IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNY 812
            +RNDYYLN++DWS  N++A+AL ++VY+W+  + + ++ + +    +Y+SSV+WIKEG  
Sbjct: 228  LRNDYYLNILDWSFQNLVAIALGSAVYIWNGENHNGIENIDLSLTCNYISSVSWIKEGTC 287

Query: 813  LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEH 992
            LAVGTS  EVQLWDV  +KRLRNM  H + VG+L WN +IL            DVRVA+H
Sbjct: 288  LAVGTSEGEVQLWDVVTKKRLRNMLGHLSVVGALSWNHFILSSGSRLGRVYHHDVRVAQH 347

Query: 993  HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-WVPLQTFTQHQGA-V 1166
            HV TL  H Q VC L+W+PDGR L+SG +D L+ +WP  PG      PL+  TQ     +
Sbjct: 348  HVGTLR-HKQAVCALKWSPDGRLLSSGCSDGLLTIWPHDPGASAQGQPLKVITQSTAVKI 406

Query: 1167 KAVAWCPWQSNVLATGGGTSDRHIRIW 1247
             ++ W P ++  +ATG GT    + +W
Sbjct: 407  CSLIWLP-KTKEIATGQGTPKNDVTVW 432


>ref|NP_001129669.1| fizzy-related protein homolog isoform 3 [Homo sapiens].
          Length = 404

 Score =  184 bits (468), Expect = 1e-46
 Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 1/219 (0%)
 Frame = +3

Query: 738  ILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLC 917
            + +L  +   GD V+SV W + GN +AVGT    VQ+WD    K+L  +  H+ARVG+L 
Sbjct: 130  VTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEGHTARVGALA 189

Query: 918  WNSYILXXXXXXXXXXXXDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVN 1094
            WN+  L            D+R         L GH QEVCGL+W+ D + LASGGNDN + 
Sbjct: 190  WNAEQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLASGGNDNKLL 249

Query: 1095 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 1274
            VW          P+Q +T+H  AVKA+AW P Q  +LA+GGGT+DR IR WN  +G  L 
Sbjct: 250  VW----NHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQPLQ 305

Query: 1275 AVDAHFQVCSILWSPYXQELISGHGFAQNQLGXLEVPTM 1391
             +D   QVC++ WS +  EL+S HG++QNQ+   + P++
Sbjct: 306  CIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSL 344


>ref|NP_005877.2| katanin p80 WD40-containing subunit B1 [Homo sapiens].
          Length = 655

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 5/230 (2%)
 Frame = +3

Query: 669  SSGNVLAVALDNS-VYLWSASSGD-ILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEV 842
            +SG +LA   D+  V LWS +  + I+ L     P   V SV        +  G+ S  +
Sbjct: 31   ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP---VESVRLNTPEELIVAGSQSGSI 87

Query: 843  QLWDVQQQKRLRNMTSHSARVGSLCWNSY--ILXXXXXXXXXXXXDVRVAEHHVATLSGH 1016
            ++WD++  K LR +  H A + SL ++ Y   +            D+R  +  V    GH
Sbjct: 88   RVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVFRYRGH 146

Query: 1017 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 1196
            SQ V  LR++PDG+ LAS  +D+ V +W    G+     +  F  H G V  V + P   
Sbjct: 147  SQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK----MMSEFPGHTGPVNVVEFHP--- 199

Query: 1197 NVLATGGGTSDRHIRIWNVCSGACLSAVDAH-FQVCSILWSPYXQELISG 1343
            N      G+SDR IR W++     +S ++     V S+L++P    L SG
Sbjct: 200  NEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSG 249


>ref|NP_599021.1| F-box-like/WD repeat-containing protein TBL1Y [Homo sapiens].
          Length = 522

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 9/237 (3%)
 Frame = +3

Query: 660  VDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSS 833
            +DW+S G +LA+ + D    +W+ +      L Q + P   + ++ W K+GNY+      
Sbjct: 241  LDWNSDGTLLAMGSYDGFARIWTENGNLASTLGQHKGP---IFALKWNKKGNYVLSAGVD 297

Query: 834  AEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEHHVATLSG 1013
                +WD    +  +    HSA    + W + +                  +H V T  G
Sbjct: 298  KTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQG 357

Query: 1014 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW- 1190
            H+ EV  ++W P G  LAS  +D  + +W           +     H   +  + W P  
Sbjct: 358  HTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD----ACVHDLQAHSKEIYTIKWSPTG 413

Query: 1191 -----QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQ-VCSILWSPYXQELISG 1343
                  ++ +     + D  +R+W+V  G C   +  H + V S+ +SP  + L SG
Sbjct: 414  PATSNPNSSIMLASASFDSTVRLWDVEQGVCTHTLMKHQEPVYSVAFSPDGKYLASG 470



 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
 Frame = +3

Query: 777  VSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWN----------- 923
            V+++ W   G  LA  +    +++W ++Q   + ++ +HS  + ++ W+           
Sbjct: 362  VNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNS 421

Query: 924  SYILXXXXXXXXXXXXDVR--VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 1097
            S +L            DV   V  H   TL  H + V  + ++PDG++LASG  D  V++
Sbjct: 422  SIMLASASFDSTVRLWDVEQGVCTH---TLMKHQEPVYSVAFSPDGKYLASGSFDKYVHI 478

Query: 1098 WPSAPGEGGWVPLQTFTQHQGAVKAVAW 1181
            W +  G      L    Q  G +  V W
Sbjct: 479  WNTQSGS-----LVHSYQGTGGIFEVCW 501


>ref|NP_599020.1| F-box-like/WD repeat-containing protein TBL1Y [Homo sapiens].
          Length = 522

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 9/237 (3%)
 Frame = +3

Query: 660  VDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAWIKEGNYLAVGTSS 833
            +DW+S G +LA+ + D    +W+ +      L Q + P   + ++ W K+GNY+      
Sbjct: 241  LDWNSDGTLLAMGSYDGFARIWTENGNLASTLGQHKGP---IFALKWNKKGNYVLSAGVD 297

Query: 834  AEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILXXXXXXXXXXXXDVRVAEHHVATLSG 1013
                +WD    +  +    HSA    + W + +                  +H V T  G
Sbjct: 298  KTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQG 357

Query: 1014 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW- 1190
            H+ EV  ++W P G  LAS  +D  + +W           +     H   +  + W P  
Sbjct: 358  HTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD----ACVHDLQAHSKEIYTIKWSPTG 413

Query: 1191 -----QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHFQ-VCSILWSPYXQELISG 1343
                  ++ +     + D  +R+W+V  G C   +  H + V S+ +SP  + L SG
Sbjct: 414  PATSNPNSSIMLASASFDSTVRLWDVEQGVCTHTLMKHQEPVYSVAFSPDGKYLASG 470



 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
 Frame = +3

Query: 777  VSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWN----------- 923
            V+++ W   G  LA  +    +++W ++Q   + ++ +HS  + ++ W+           
Sbjct: 362  VNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNS 421

Query: 924  SYILXXXXXXXXXXXXDVR--VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 1097
            S +L            DV   V  H   TL  H + V  + ++PDG++LASG  D  V++
Sbjct: 422  SIMLASASFDSTVRLWDVEQGVCTH---TLMKHQEPVYSVAFSPDGKYLASGSFDKYVHI 478

Query: 1098 WPSAPGEGGWVPLQTFTQHQGAVKAVAW 1181
            W +  G      L    Q  G +  V W
Sbjct: 479  WNTQSGS-----LVHSYQGTGGIFEVCW 501


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,895,024
Number of extensions: 1950686
Number of successful extensions: 10683
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 10139
Number of HSP's successfully gapped: 78
Length of query: 463
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 357
Effective length of database: 14,802,980
Effective search space: 5284663860
Effective search space used: 5284663860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013488
         (1391 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         462   e-127

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  462 bits (233), Expect = e-127
 Identities = 233/233 (100%)
 Strand = Plus / Minus

                                                                             
Query: 938       cagtggctcacgttccggccacatccaccaccatgatgttcgggtggcagaacaccatgt 997
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155343526 cagtggctcacgttccggccacatccaccaccatgatgttcgggtggcagaacaccatgt 155343467

                                                                             
Query: 998       ggccacactgagtggccacagccaggaagtgtgtgggctgcgctgggccccagacggtcg 1057
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155343466 ggccacactgagtggccacagccaggaagtgtgtgggctgcgctgggccccagacggtcg 155343407

                                                                             
Query: 1058      acatctagccagtggtggcaacgataacttggtcaatgtgtggcctagtgctcctggaga 1117
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155343406 acatctagccagtggtggcaacgataacttggtcaatgtgtggcctagtgctcctggaga 155343347

                                                                      
Query: 1118      gggtggctgggttcctctgcagacattcacgcagcaccaaggagctgtcaagg 1170
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155343346 gggtggctgggttcctctgcagacattcacgcagcaccaaggagctgtcaagg 155343294



 Score =  391 bits (197), Expect = e-106
 Identities = 197/197 (100%)
 Strand = Plus / Minus

                                                                             
Query: 649       acctgaacctggtggactggagctctgggaacgtactggctgtggccttggacaacagcg 708
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155344049 acctgaacctggtggactggagctctgggaacgtactggctgtggccttggacaacagcg 155343990

                                                                             
Query: 709       tgtacttgtggagtgccagctctggtgacatcctgcagctgctgcagatggagcagcctg 768
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155343989 tgtacttgtggagtgccagctctggtgacatcctgcagctgctgcagatggagcagcctg 155343930

                                                                             
Query: 769       gggactatgtgtcttctgtggcctggatcaaagagggcaactacctggctgtgggcacca 828
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155343929 gggactatgtgtcttctgtggcctggatcaaagagggcaactacctggctgtgggcacca 155343870

                                  
Query: 829       gcagtgctgaggtccag 845
                 |||||||||||||||||
Sbjct: 155343869 gcagtgctgaggtccag 155343853



 Score =  373 bits (188), Expect = e-100
 Identities = 190/191 (99%)
 Strand = Plus / Minus

                                                                             
Query: 84        gccgctcccatggcccagttcgtgttcgagagcgacctgcactccctgctgcagctggat 143
                 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155345070 gccgctcncatggcccagttcgtgttcgagagcgacctgcactccctgctgcagctggat 155345011

                                                                             
Query: 144       gcgcccatccccaatgcacctcccgcgcgctggcagcgcaaagcgaaggaagccgcgggg 203
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155345010 gcgcccatccccaatgcacctcccgcgcgctggcagcgcaaagcgaaggaagccgcgggg 155344951

                                                                             
Query: 204       ccggccccctcgcccatgcgggccgccaaccgatcccacagcgccggcaggacccccggc 263
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155344950 ccggccccctcgcccatgcgggccgccaaccgatcccacagcgccggcaggacccccggc 155344891

                            
Query: 264       cgaacgccggg 274
                 |||||||||||
Sbjct: 155344890 cgaacgccggg 155344880



 Score =  299 bits (151), Expect = 2e-78
 Identities = 151/151 (100%)
 Strand = Plus / Minus

                                                                             
Query: 273       ggcaaatccaactccaagatgcagaccactcccagcaagcctggcggcgatcgctatatc 332
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155344769 ggcaaatccaactccaagatgcagaccactcccagcaagcctggcggcgatcgctatatc 155344710

                                                                             
Query: 333       ccccaccgcagtgcctcccagatggaggtggccagcttcctcctgagcaaggagaaccag 392
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155344709 ccccaccgcagtgcctcccagatggaggtggccagcttcctcctgagcaaggagaaccag 155344650

                                                
Query: 393       cccgacaacagccagacgcccaccaagaagg 423
                 |||||||||||||||||||||||||||||||
Sbjct: 155344649 cccgacaacagccagacgcccaccaagaagg 155344619



 Score =  250 bits (126), Expect = 2e-63
 Identities = 129/130 (99%)
 Strand = Plus / Minus

                                                                             
Query: 1168      aggctgtagcttggtgtccctggcagtccaatgtcctggcaactggagggggcaccagtg 1227
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155343142 aggctgtagcttggtgtccctggcagtccaatgtcctggcaactggagggggcaccagtg 155343083

                                                                             
Query: 1228      atcgacacattcgaatctggaacgtctgctctggggcctgtctgagtgccgtggacgccc 1287
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155343082 atcgacacattcgaatctggaacgtctgctctggggcctgtctgagtgccgtggacgccc 155343023

                           
Query: 1288      atttccaggt 1297
                 ||| ||||||
Sbjct: 155343022 attcccaggt 155343013



 Score =  250 bits (126), Expect = 2e-63
 Identities = 129/130 (99%)
 Strand = Plus / Minus

                                                                             
Query: 519       ggttaccagaacagactgaaagtactctacagccagaaggccacgcccgggtccagcagg 578
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155344258 ggttaccagaacagactgaaagtactctacagccagaaggccacgcccgggtccagcagg 155344199

                                                                             
Query: 579       aagacctgccgttacatcccttccctgccggaccggatcctggatgcccctgaaatccgc 638
                 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155344198 aagacctgccgatacatcccttccctgccggaccggatcctggatgcccctgaaatccgc 155344139

                           
Query: 639       aacgactact 648
                 ||||||||||
Sbjct: 155344138 aacgactact 155344129



 Score =  200 bits (101), Expect = 1e-48
 Identities = 101/101 (100%)
 Strand = Plus / Minus

                                                                             
Query: 421       aggaacatcagaaggcctgggctctgaacctgaacggttttgacgtggaggaagccaaga 480
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155344534 aggaacatcagaaggcctgggctctgaacctgaacggttttgacgtggaggaagccaaga 155344475

                                                          
Query: 481       tcctccggctcagtggaaaaccacagaacgccccagagggt 521
                 |||||||||||||||||||||||||||||||||||||||||
Sbjct: 155344474 tcctccggctcagtggaaaaccacagaacgccccagagggt 155344434



 Score =  192 bits (97), Expect = 4e-46
 Identities = 97/97 (100%)
 Strand = Plus / Minus

                                                                             
Query: 844       agctctgggatgtgcaacagcagaaacggcttcgaaacatgaccagtcattctgcccgag 903
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155343758 agctctgggatgtgcaacagcagaaacggcttcgaaacatgaccagtcattctgcccgag 155343699

                                                      
Query: 904       tgggctccctctgttggaacagctacatcctgtccag 940
                 |||||||||||||||||||||||||||||||||||||
Sbjct: 155343698 tgggctccctctgttggaacagctacatcctgtccag 155343662



 Score =  125 bits (63), Expect = 7e-26
 Identities = 86/93 (92%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                             
Query: 1293      caggtgtgctccattctctggtctccctactancaggagctcatttcaggccatggcttt 1352
                 ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||
Sbjct: 155341806 caggtgtgctccattctctggtctccccactacaaggagctcatttcaggccatggcttt 155341747

                                                  
Query: 1353      gctcagaaccagctgggttnattggaagtaccc 1385
                 || ||||||||||| ||||  ||||||||||||
Sbjct: 155341746 gcccagaaccagct-ggttatttggaagtaccc 155341715


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,306,133
Number of extensions: 185
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 9
Length of query: 1391
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1370
Effective length of database: 2,808,413,156
Effective search space: 3847526023720
Effective search space used: 3847526023720
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)