Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013491
(1055 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069005.1| RNA binding protein fox-1 homolog 3 [Bos tau... 134 1e-31
Alignment gi|NP_001069286.1| RNA binding protein fox-1 homolog 1 [Bos tau... 67 2e-11
>ref|NP_001069005.1| RNA binding protein fox-1 homolog 3 [Bos taurus].
Length = 328
Score = 134 bits (337), Expect = 1e-31
Identities = 66/94 (70%), Positives = 67/94 (71%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEYA DYSGQTPVPPEHGMTLYTPAQTH GAQTVPQ
Sbjct: 16 NGIPAEYAPPPPHPTPDYSGQTPVPPEHGMTLYTPAQTHPEQPSSDTSTQPITGAQTVPQ 75
Query: 944 TDEAAQTDSQPLHPSDPTEKQQPQAAAVFNFPFR 1045
TDEAAQTDSQPLHPSDPTEKQQP+ V N PFR
Sbjct: 76 TDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFR 109
>ref|NP_001069286.1| RNA binding protein fox-1 homolog 1 [Bos taurus].
Length = 355
Score = 67.4 bits (163), Expect = 2e-11
Identities = 42/96 (43%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEY +Y+GQT V PEH + LY PAQ+H +G T
Sbjct: 35 NGIPAEYTAPHPHPAPEYTGQTTV-PEHTLNLYPPAQSHSEQSAADTSAHTVSGTAT--- 90
Query: 944 TDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
TD++A TD QP PS+ TE K QP+ V N PFR
Sbjct: 91 TDDSAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 126
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,732,589
Number of extensions: 1207727
Number of successful extensions: 6533
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6492
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,273,310
Effective search space: 3539780880
Effective search space used: 3539780880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013491
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013491
(1055 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851461.1| PREDICTED: similar to ataxin 2-binding protein ... 72 7e-13
Alignment gi|XP_863775.1| PREDICTED: similar to ataxin 2-binding protein ... 72 7e-13
Alignment gi|XP_863750.1| PREDICTED: similar to ataxin 2-binding protein ... 72 7e-13
Alignment gi|XP_851031.1| PREDICTED: similar to Ataxin 2-binding protein ... 66 6e-11
>ref|XP_851461.1| PREDICTED: similar to ataxin 2-binding protein 1 isoform 1 isoform 1
[Canis familiaris].
Length = 418
Score = 72.4 bits (176), Expect = 7e-13
Identities = 45/96 (46%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEY +Y+GQT VP EH + LY PAQTH +G T Q
Sbjct: 55 NGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSAADTSAQTVSG--TATQ 111
Query: 944 TDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
TD+AA TD QP PS+ TE K QP+ V N PFR
Sbjct: 112 TDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
>ref|XP_863775.1| PREDICTED: similar to ataxin 2-binding protein 1 isoform 3 isoform 3
[Canis familiaris].
Length = 395
Score = 72.4 bits (176), Expect = 7e-13
Identities = 45/96 (46%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEY +Y+GQT VP EH + LY PAQTH +G T Q
Sbjct: 55 NGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSAADTSAQTVSG--TATQ 111
Query: 944 TDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
TD+AA TD QP PS+ TE K QP+ V N PFR
Sbjct: 112 TDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
>ref|XP_863750.1| PREDICTED: similar to ataxin 2-binding protein 1 isoform 2 isoform 2
[Canis familiaris].
Length = 392
Score = 72.4 bits (176), Expect = 7e-13
Identities = 45/96 (46%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEY +Y+GQT VP EH + LY PAQTH +G T Q
Sbjct: 55 NGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSAADTSAQTVSG--TATQ 111
Query: 944 TDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
TD+AA TD QP PS+ TE K QP+ V N PFR
Sbjct: 112 TDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
>ref|XP_851031.1| PREDICTED: similar to Ataxin 2-binding protein 1 [Canis familiaris].
Length = 531
Score = 65.9 bits (159), Expect = 6e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +2
Query: 938 PQTDEAAQTDSQPLHPSDPTEKQQPQAAAVFNFPFR 1045
PQTDEAAQTDSQPLHPSDPTEKQQP+ V N PFR
Sbjct: 293 PQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFR 328
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,336,143
Number of extensions: 1075587
Number of successful extensions: 6908
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6876
Number of HSP's successfully gapped: 4
Length of query: 351
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 247
Effective length of database: 15,407,560
Effective search space: 3805667320
Effective search space used: 3805667320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013491
(1055 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124663.2| PREDICTED: RNA binding protein fox-1 homolog... 71 1e-12
>ref|XP_003124663.2| PREDICTED: RNA binding protein fox-1 homolog 1 isoform 1 [Sus
scrofa].
Length = 562
Score = 70.9 bits (172), Expect = 1e-12
Identities = 44/96 (45%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEY +Y+GQT VP EH + LY PAQ+H +G T Q
Sbjct: 101 NGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQSHSEQSAADTSAHTVSG--TATQ 157
Query: 944 TDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
TD+AA TD QP PS+ TE K QP+ V N PFR
Sbjct: 158 TDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 193
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,286,916
Number of extensions: 1020384
Number of successful extensions: 4219
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4126
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,854,232
Effective search space: 2222412232
Effective search space used: 2222412232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013491
(1055 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020102.2| RNA binding protein fox-1 homolog 3 isoform ... 128 9e-30
Alignment gi|NP_001034256.1| RNA binding protein fox-1 homolog 3 isoform ... 128 9e-30
Alignment gi|NP_001034257.1| RNA binding protein fox-1 homolog 3 isoform ... 121 8e-28
Alignment gi|NP_899011.2| RNA binding protein fox-1 homolog 1 isoform alp... 67 2e-11
Alignment gi|NP_067452.2| RNA binding protein fox-1 homolog 1 isoform gam... 67 2e-11
>ref|NP_001020102.2| RNA binding protein fox-1 homolog 3 isoform 3 [Mus musculus].
Length = 313
Score = 128 bits (321), Expect = 9e-30
Identities = 63/94 (67%), Positives = 65/94 (69%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEYA DYSGQTPVPPEHGMTLYTPAQTH AG QTVPQ
Sbjct: 16 NGIPAEYAPPPPHPTQDYSGQTPVPPEHGMTLYTPAQTHPEQPGTEASTQPIAGTQTVPQ 75
Query: 944 TDEAAQTDSQPLHPSDPTEKQQPQAAAVFNFPFR 1045
DEAAQTD+Q LHPSDPTEKQQP+ V N PFR
Sbjct: 76 ADEAAQTDNQQLHPSDPTEKQQPKRLHVSNIPFR 109
>ref|NP_001034256.1| RNA binding protein fox-1 homolog 3 isoform 1 [Mus musculus].
Length = 374
Score = 128 bits (321), Expect = 9e-30
Identities = 63/94 (67%), Positives = 65/94 (69%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEYA DYSGQTPVPPEHGMTLYTPAQTH AG QTVPQ
Sbjct: 16 NGIPAEYAPPPPHPTQDYSGQTPVPPEHGMTLYTPAQTHPEQPGTEASTQPIAGTQTVPQ 75
Query: 944 TDEAAQTDSQPLHPSDPTEKQQPQAAAVFNFPFR 1045
DEAAQTD+Q LHPSDPTEKQQP+ V N PFR
Sbjct: 76 ADEAAQTDNQQLHPSDPTEKQQPKRLHVSNIPFR 109
>ref|NP_001034257.1| RNA binding protein fox-1 homolog 3 isoform 2 [Mus musculus].
Length = 326
Score = 121 bits (304), Expect = 8e-28
Identities = 62/94 (65%), Positives = 64/94 (68%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEYA DYSGQTPVPPEHGMTLYTPAQTH AG QTVP
Sbjct: 16 NGIPAEYAPPPPHPTQDYSGQTPVPPEHGMTLYTPAQTHPEQPGTEASTQPIAGTQTVP- 74
Query: 944 TDEAAQTDSQPLHPSDPTEKQQPQAAAVFNFPFR 1045
DEAAQTD+Q LHPSDPTEKQQP+ V N PFR
Sbjct: 75 ADEAAQTDNQQLHPSDPTEKQQPKRLHVSNIPFR 108
>ref|NP_899011.2| RNA binding protein fox-1 homolog 1 isoform alpha [Mus musculus].
Length = 417
Score = 67.0 bits (162), Expect = 2e-11
Identities = 45/100 (45%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTV-- 937
NGIPAEY +Y+GQT V P+H + LY P QTH AQTV
Sbjct: 55 NGIPAEYTAPHPHPAPEYTGQTTV-PDHTLNLYPPTQTH-------SEQSADTSAQTVSG 106
Query: 938 --PQTDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
QTD+AA TD QP PS+ TE K QP+ V N PFR
Sbjct: 107 TATQTDDAAPTDGQPQTQPSENTESKSQPKRLHVSNIPFR 146
>ref|NP_067452.2| RNA binding protein fox-1 homolog 1 isoform gamma [Mus musculus].
Length = 396
Score = 67.0 bits (162), Expect = 2e-11
Identities = 45/100 (45%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTV-- 937
NGIPAEY +Y+GQT V P+H + LY P QTH AQTV
Sbjct: 35 NGIPAEYTAPHPHPAPEYTGQTTV-PDHTLNLYPPTQTH-------SEQSADTSAQTVSG 86
Query: 938 --PQTDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
QTD+AA TD QP PS+ TE K QP+ V N PFR
Sbjct: 87 TATQTDDAAPTDGQPQTQPSENTESKSQPKRLHVSNIPFR 126
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,485,098
Number of extensions: 843707
Number of successful extensions: 4561
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4516
Number of HSP's successfully gapped: 5
Length of query: 351
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 249
Effective length of database: 12,553,887
Effective search space: 3125917863
Effective search space used: 3125917863
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013491
(1055 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076044.1| RNA binding protein fox-1 homolog 3 [Homo sa... 131 1e-30
Alignment gi|NP_001135806.1| RNA binding protein fox-1 homolog 1 isoform ... 72 7e-13
Alignment gi|NP_001135805.1| RNA binding protein fox-1 homolog 1 isoform ... 72 7e-13
Alignment gi|NP_665900.1| RNA binding protein fox-1 homolog 1 isoform 3 [... 72 7e-13
Alignment gi|NP_665899.1| RNA binding protein fox-1 homolog 1 isoform 2 [... 72 7e-13
Alignment gi|NP_665898.1| RNA binding protein fox-1 homolog 1 isoform 1 [... 72 7e-13
Alignment gi|NP_061193.2| RNA binding protein fox-1 homolog 1 isoform 4 [... 72 7e-13
Alignment gi|XP_002344493.2| PREDICTED: hypothetical protein LOC100287250... 70 3e-12
>ref|NP_001076044.1| RNA binding protein fox-1 homolog 3 [Homo sapiens].
Length = 312
Score = 131 bits (329), Expect = 1e-30
Identities = 65/94 (69%), Positives = 66/94 (70%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEYA DYSGQTPVP EHGMTLYTPAQTH AG QTVPQ
Sbjct: 16 NGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQ 75
Query: 944 TDEAAQTDSQPLHPSDPTEKQQPQAAAVFNFPFR 1045
TDEAAQTDSQPLHPSDPTEKQQP+ V N PFR
Sbjct: 76 TDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFR 109
>ref|NP_001135806.1| RNA binding protein fox-1 homolog 1 isoform 4 [Homo sapiens].
Length = 397
Score = 72.4 bits (176), Expect = 7e-13
Identities = 45/96 (46%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEY +Y+GQT VP EH + LY PAQTH +G T Q
Sbjct: 35 NGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSG--TATQ 91
Query: 944 TDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
TD+AA TD QP PS+ TE K QP+ V N PFR
Sbjct: 92 TDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
>ref|NP_001135805.1| RNA binding protein fox-1 homolog 1 isoform 5 [Homo sapiens].
Length = 370
Score = 72.4 bits (176), Expect = 7e-13
Identities = 45/96 (46%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEY +Y+GQT VP EH + LY PAQTH +G T Q
Sbjct: 35 NGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSG--TATQ 91
Query: 944 TDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
TD+AA TD QP PS+ TE K QP+ V N PFR
Sbjct: 92 TDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
>ref|NP_665900.1| RNA binding protein fox-1 homolog 1 isoform 3 [Homo sapiens].
Length = 395
Score = 72.4 bits (176), Expect = 7e-13
Identities = 45/96 (46%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEY +Y+GQT VP EH + LY PAQTH +G T Q
Sbjct: 55 NGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSG--TATQ 111
Query: 944 TDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
TD+AA TD QP PS+ TE K QP+ V N PFR
Sbjct: 112 TDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
>ref|NP_665899.1| RNA binding protein fox-1 homolog 1 isoform 2 [Homo sapiens].
Length = 392
Score = 72.4 bits (176), Expect = 7e-13
Identities = 45/96 (46%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEY +Y+GQT VP EH + LY PAQTH +G T Q
Sbjct: 55 NGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSG--TATQ 111
Query: 944 TDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
TD+AA TD QP PS+ TE K QP+ V N PFR
Sbjct: 112 TDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
>ref|NP_665898.1| RNA binding protein fox-1 homolog 1 isoform 1 [Homo sapiens].
Length = 418
Score = 72.4 bits (176), Expect = 7e-13
Identities = 45/96 (46%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEY +Y+GQT VP EH + LY PAQTH +G T Q
Sbjct: 55 NGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSG--TATQ 111
Query: 944 TDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
TD+AA TD QP PS+ TE K QP+ V N PFR
Sbjct: 112 TDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
>ref|NP_061193.2| RNA binding protein fox-1 homolog 1 isoform 4 [Homo sapiens].
Length = 397
Score = 72.4 bits (176), Expect = 7e-13
Identities = 45/96 (46%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +2
Query: 764 NGIPAEYAXXXXXXXXDYSGQTPVPPEHGMTLYTPAQTHXXXXXXXXXXXXXAGAQTVPQ 943
NGIPAEY +Y+GQT VP EH + LY PAQTH +G T Q
Sbjct: 35 NGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSG--TATQ 91
Query: 944 TDEAAQTDSQP-LHPSDPTE-KQQPQAAAVFNFPFR 1045
TD+AA TD QP PS+ TE K QP+ V N PFR
Sbjct: 92 TDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
>ref|XP_002344493.2| PREDICTED: hypothetical protein LOC100287250 [Homo sapiens].
Length = 314
Score = 70.1 bits (170), Expect = 3e-12
Identities = 41/91 (45%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +3
Query: 138 ERRASAEPRGCSGAGRASSDSIPRPWPQLLAWSEEXXXXXXXXXXXXXXXXX--YRCPRS 311
ERR RG + + PQ LAWSEE RC
Sbjct: 217 ERRRGKSERGAAPKPAEPPRTAAPAGPQQLAWSEEKQLPQLPPEPGLARPLPPARRCLCG 276
Query: 312 PGTPLPSRRPGCSRGMAAGPLSPATGSAEPI 404
P TPLP+RRPGCSRGMAAGP SPA GSAEP+
Sbjct: 277 PRTPLPARRPGCSRGMAAGPQSPAAGSAEPV 307
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,401,885
Number of extensions: 1026850
Number of successful extensions: 6079
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6017
Number of HSP's successfully gapped: 8
Length of query: 351
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,901,872
Effective search space: 3695664256
Effective search space used: 3695664256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013491
(1055 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 268 6e-69
>Sscrofa_Chr12
|| Length = 63588571
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 402 attggaaacctgtctctgaggccctgaagcttttcctagtcttccctggcaactctccat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2894883 attggaaacctgtctctgaggccctgaagcttttcctagtcttccctggcaactctccat 2894942
Query: 462 cccaaggaagttccagaaagaaccccaggggggcctccctcctacggcaaagcagacctc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2894943 cccaaggaagttccagaaagaaccccaggggggcctccctcctacggcaaagcagacctc 2895002
Query: 522 cccttccacttccag 536
|||||||||||||||
Sbjct: 2895003 cccttccacttccag 2895017
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 534 cagtgcagcgctaagtcagaactgcccaaggaagattctgcccacgtttatctcaaactg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3070781 cagtgcagcgctaagtcagaactgcccaaggaagattctgcccacgtttatctcaaactg 3070840
Query: 594 gtctgcaggccctcaggctgggacccgtcccaggagctgcccatctgcaaagag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3070841 gtctgcaggccctcaggctgggacccgtcccaggagctgcccatctgcaaagag 3070894
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 131 aggcggcgagagaagagcaagtgcggagccgcggggctgctccggagccggcagagcctc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778391 aggcggcgagagaagagcaagtgcggagccgcggggctgctccggagccggcagagcctc 2778450
Query: 191 ctcggacagcataccccggccctggccccagttgctcgcgtggtcagaggaaa 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778451 ctcggacagcataccccggccctggccccagttgctcgcgtggtcagaggaaa 2778503
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 293 ttaccggtgcccacgcagccccgggacgccgctaccctctcggcggccgggatgcagccg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778553 ttaccggtgcccacgcagccccgggacgccgctaccctctcggcggccgggatgcagccg 2778612
Query: 353 gggcatggccgccgggcccctgtcacctgccacggggagcgctgagccc 401
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778613 gggcatggccgccgggcccctgtcacctgccacggggagcgctgagccc 2778661
Score = 81.8 bits (41), Expect = 7e-13
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 646 agagcccacagtgcctcgggaaaaattggctgaataaaagg 686
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 3133327 agagcccacagtgcctcgggaaaaattggctgaataaaagg 3133367
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,855,304
Number of extensions: 137
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 5
Length of query: 1055
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1034
Effective length of database: 2,808,413,156
Effective search space: 2903899203304
Effective search space used: 2903899203304
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)