Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013496
(1180 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002701684.1| PREDICTED: LPS-responsive vesicle traffickin... 669 0.0
Alignment gi|XP_002694372.1| PREDICTED: LPS-responsive vesicle traffickin... 668 0.0
Alignment gi|XP_002691798.1| PREDICTED: neurobeachin [Bos taurus]. 573 e-179
Alignment gi|NP_001096643.1| neurobeachin-like protein 1 [Bos taurus]. 340 2e-93
Alignment gi|XP_002707872.1| PREDICTED: lysosomal trafficking regulator-l... 339 2e-93
Alignment gi|XP_617252.3| PREDICTED: lysosomal trafficking regulator-like... 339 2e-93
Alignment gi|NP_001192874.1| WD repeat- and FYVE domain-containing protei... 312 3e-85
Alignment gi|XP_002699004.1| PREDICTED: hCG1745555-like [Bos taurus]. 312 3e-85
Alignment gi|XP_002692713.1| PREDICTED: neutral sphingomyelinase (N-SMase... 299 3e-81
Alignment gi|XP_002697156.1| PREDICTED: neurobeachin-like 2 [Bos taurus]. 295 7e-80
>ref|XP_002701684.1| PREDICTED: LPS-responsive vesicle trafficking, beach and anchor
containing, partial [Bos taurus].
Length = 2815
Score = 669 bits (1727), Expect = 0.0
Identities = 324/331 (97%), Positives = 330/331 (99%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGR+YNDLNQYPVFPWVITNYESEELD
Sbjct: 2152 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVITNYESEELD 2211
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE
Sbjct: 2212 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2271
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYL EMFVNFN+YNL
Sbjct: 2272 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLSEMFVNFNNYNL 2331
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GVMDDGTVVSDVELPPWA+TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR
Sbjct: 2332 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2391
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 900
ALNVFYYLTYEGAVNLNSI+DP+LREAVE+QIRSFGQTPSQLLIEPHPPRGSAMQASPLM
Sbjct: 2392 ALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 2451
Query: 901 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 993
FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG
Sbjct: 2452 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 2482
Score = 122 bits (306), Expect = 6e-28
Identities = 62/80 (77%), Positives = 67/80 (83%)
Frame = +2
Query: 941 SSPPTPLSLTWRPTPSLGLAIPAVITVTANRLFAVNKWDNLPAHQGAVQDQPYQLPVEID 1120
+SP T ++ +P GLA PAVITVTANRLFA+NKW NLPAHQGAVQDQPYQLPVEID
Sbjct: 2469 NSPVTHVAANTQP----GLATPAVITVTANRLFAMNKWHNLPAHQGAVQDQPYQLPVEID 2524
Query: 1121 PLIASNTGMHRETITDLLDQ 1180
PLIASNTGMHR ITDLLDQ
Sbjct: 2525 PLIASNTGMHRRQITDLLDQ 2544
>ref|XP_002694372.1| PREDICTED: LPS-responsive vesicle trafficking, beach and anchor
containing [Bos taurus].
Length = 2797
Score = 668 bits (1723), Expect = 0.0
Identities = 323/331 (97%), Positives = 330/331 (99%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGR+YNDLNQYPVFPWVITNYESEELD
Sbjct: 2134 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVITNYESEELD 2193
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE
Sbjct: 2194 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2253
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYL EMFVNFN+YNL
Sbjct: 2254 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLSEMFVNFNNYNL 2313
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GVMDDGTVVSDVELPPWA+TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR
Sbjct: 2314 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2373
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 900
ALNVFYYLTYEGAVNLNSI+DP+LREAV++QIRSFGQTPSQLLIEPHPPRGSAMQASPLM
Sbjct: 2374 ALNVFYYLTYEGAVNLNSITDPVLREAVKAQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 2433
Query: 901 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 993
FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG
Sbjct: 2434 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 2464
Score = 122 bits (306), Expect = 6e-28
Identities = 62/80 (77%), Positives = 67/80 (83%)
Frame = +2
Query: 941 SSPPTPLSLTWRPTPSLGLAIPAVITVTANRLFAVNKWDNLPAHQGAVQDQPYQLPVEID 1120
+SP T ++ +P GLA PAVITVTANRLFA+NKW NLPAHQGAVQDQPYQLPVEID
Sbjct: 2451 NSPVTHVAANTQP----GLATPAVITVTANRLFAMNKWHNLPAHQGAVQDQPYQLPVEID 2506
Query: 1121 PLIASNTGMHRETITDLLDQ 1180
PLIASNTGMHR ITDLLDQ
Sbjct: 2507 PLIASNTGMHRRQITDLLDQ 2526
>ref|XP_002691798.1| PREDICTED: neurobeachin [Bos taurus].
Length = 2856
Score = 573 bits (1476), Expect(2) = e-179
Identities = 270/335 (80%), Positives = 304/335 (90%), Gaps = 5/335 (1%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
A+PRQL+K+SNMTQRWQ REISNFEYLMFLNTIAGR+YNDLNQYPVFPWV+TNYESEELD
Sbjct: 2184 ATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELD 2243
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLP NFRDLSKPIGALNPKRA F+AERYE+WEDDQ P +HY THYSTA+ L+WL+RIE
Sbjct: 2244 LTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIE 2303
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTT+FLN GKFDH +RTFSS++R+WR SQRDTSD+KELIPEFYYLPEMFVN N YNL
Sbjct: 2304 PFTTFFLNANDGKFDHPNRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYNL 2363
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GV +D VV+DV+LPPWA+ E+FVRINR+ALESEFVSCQLHQWIDL+FGYKQ+GPEAVR
Sbjct: 2364 GVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLVFGYKQRGPEAVR 2423
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQ----- 885
ALNVF+YLTYEG+VNL+SI+DP+LREA+E+QI++FGQTPSQLLIEPHPPR SAM
Sbjct: 2424 ALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLP 2483
Query: 886 ASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQP 990
SPLMF DQ QQDVIMVLKFPSNSPVTHVAANT P
Sbjct: 2484 QSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLP 2518
Score = 73.9 bits (180), Expect(2) = e-179
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Frame = +2
Query: 995 LAIPAVITVTANRLFAVNKWDNLPAHQGAVQ---DQPYQLPVEIDPLIASNTGMHRETIT 1165
L IPAV+TVT +RLFAVN+W N +GA DQ + LP+E+DPLIA+N+G+++ IT
Sbjct: 2520 LTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQIT 2579
Query: 1166 DLLDQ 1180
DL+DQ
Sbjct: 2580 DLVDQ 2584
>ref|NP_001096643.1| neurobeachin-like protein 1 [Bos taurus].
Length = 2592
Score = 340 bits (871), Expect = 2e-93
Identities = 165/285 (57%), Positives = 215/285 (75%), Gaps = 3/285 (1%)
Frame = +1
Query: 4 SPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDL 183
SP++LFKAS +TQ+W +REISNF+YL+ LNT+AGR+YNDL QYPVFPW++ +Y SEELDL
Sbjct: 1981 SPQELFKASGLTQKWVNREISNFDYLIQLNTMAGRTYNDLAQYPVFPWILQDYTSEELDL 2040
Query: 184 TLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQ--VPKFHYGTHYSTASFVLAWLLRI 357
PS FRDLSKPIG +N K A E+YE++ED + KFHYGTHYS ++ V+ +L+R
Sbjct: 2041 NNPSVFRDLSKPIGVVNDKNAKATREKYENFEDPMGTIDKFHYGTHYSNSAGVMHYLIRT 2100
Query: 358 EPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYN 537
EPFTT + LQ G+FD ADR F SI W+ + D+KELIPEF+Y PE N N +N
Sbjct: 2101 EPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNPYDVKELIPEFFYFPEFLENQNQFN 2160
Query: 538 LGVMD-DGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEA 714
LG + +V+DV LP WA+++E+F+ +R ALESE+VS LH+WIDLIFGYKQ+GP A
Sbjct: 2161 LGRLQVSKELVNDVVLPKWAKSAEDFICKHRKALESEYVSAHLHEWIDLIFGYKQRGPAA 2220
Query: 715 VRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLL 849
V ALNVFYY +YEGAV+L++++D R+A+E I +FGQTP QLL
Sbjct: 2221 VEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLL 2265
>ref|XP_002707872.1| PREDICTED: lysosomal trafficking regulator-like [Bos taurus].
Length = 3526
Score = 339 bits (870), Expect = 2e-93
Identities = 159/284 (55%), Positives = 213/284 (75%), Gaps = 4/284 (1%)
Frame = +1
Query: 31 NMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDL 210
++TQRW+ EISNF+YLM LNT+AGRSYNDL QYPVFPW++ +Y+SEE+DLT P FR+L
Sbjct: 2693 SVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNL 2752
Query: 211 SKPIGALNPKRAAFFAERYESWED--DQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
+KP+GA +R A + +RY+ WED + P +HYGTHYS+A V ++L+R+EPFT FL
Sbjct: 2753 AKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLR 2812
Query: 385 LQGGKFDHADRTFSSISRAWRN-SQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGT 561
LQGG FD ADR F S+ AW + S+ + +D+KELIPEF+YLPE N N+++LG +GT
Sbjct: 2813 LQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGT 2872
Query: 562 VVSDVELPPWAR-TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFY 738
+ DV LPPWA+ EF+R++R ALE ++VS LH+WIDLIFGYKQQGP AV A+NVF+
Sbjct: 2873 KLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFH 2932
Query: 739 YLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPR 870
+L YEG V++ +I+DP+ A I +FGQ P QL +PHPP+
Sbjct: 2933 HLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPK 2976
>ref|XP_617252.3| PREDICTED: lysosomal trafficking regulator-like [Bos taurus].
Length = 3527
Score = 339 bits (870), Expect = 2e-93
Identities = 159/284 (55%), Positives = 213/284 (75%), Gaps = 4/284 (1%)
Frame = +1
Query: 31 NMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDL 210
++TQRW+ EISNF+YLM LNT+AGRSYNDL QYPVFPW++ +Y+SEE+DLT P FR+L
Sbjct: 2694 SVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNL 2753
Query: 211 SKPIGALNPKRAAFFAERYESWED--DQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
+KP+GA +R A + +RY+ WED + P +HYGTHYS+A V ++L+R+EPFT FL
Sbjct: 2754 AKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLR 2813
Query: 385 LQGGKFDHADRTFSSISRAWRN-SQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGT 561
LQGG FD ADR F S+ AW + S+ + +D+KELIPEF+YLPE N N+++LG +GT
Sbjct: 2814 LQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGT 2873
Query: 562 VVSDVELPPWAR-TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFY 738
+ DV LPPWA+ EF+R++R ALE ++VS LH+WIDLIFGYKQQGP AV A+NVF+
Sbjct: 2874 KLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFH 2933
Query: 739 YLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPR 870
+L YEG V++ +I+DP+ A I +FGQ P QL +PHPP+
Sbjct: 2934 HLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPK 2977
>ref|NP_001192874.1| WD repeat- and FYVE domain-containing protein 4 [Bos taurus].
Length = 3188
Score = 312 bits (800), Expect = 3e-85
Identities = 153/292 (52%), Positives = 199/292 (68%), Gaps = 5/292 (1%)
Frame = +1
Query: 34 MTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLS 213
M Q+WQ R+ISNFEYLM+LNT+AGR+YND QYPVFPWV+ +Y S+ L+L P FRDLS
Sbjct: 2541 MLQKWQKRDISNFEYLMYLNTLAGRTYNDYMQYPVFPWVLADYTSQTLNLMNPKTFRDLS 2600
Query: 214 KPIGALNPKRAAFFAERY---ESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
KP+GA +R F +R+ E E D + HY THYS+A V ++L+R+ PFT F +
Sbjct: 2601 KPMGAQTKERKLKFIQRFKEVEKTEGDVTARCHYCTHYSSAIIVASYLVRMPPFTQAFCS 2660
Query: 385 LQGGKFDHADRTFSSISRAWRNSQRDT-SDIKELIPEFYYLPEMFVNFNDYNLGVMDDGT 561
LQGG FD ADR F S+ AW ++ R+ SD++EL PEF+YLPE N N G M DGT
Sbjct: 2661 LQGGSFDVADRMFHSVKNAWESASRENMSDVRELTPEFFYLPEFLTNCNALEFGCMQDGT 2720
Query: 562 VVSDVELPPWA-RTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFY 738
+ DV+LPPWA +F+ ++R ALES+FVS LH WIDLIFGYKQQG AV A+N F+
Sbjct: 2721 ALGDVQLPPWADGDPRKFISLHRQALESDFVSANLHHWIDLIFGYKQQGSAAVEAVNTFH 2780
Query: 739 YLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASP 894
Y V+L+SISDP++R + + +FGQ P QL +PHP R +A + SP
Sbjct: 2781 PYFYGDKVDLSSISDPLIRSTILGFVSNFGQVPKQLFTKPHPARTAAGKPSP 2832
>ref|XP_002699004.1| PREDICTED: hCG1745555-like [Bos taurus].
Length = 3188
Score = 312 bits (800), Expect = 3e-85
Identities = 153/292 (52%), Positives = 199/292 (68%), Gaps = 5/292 (1%)
Frame = +1
Query: 34 MTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLS 213
M Q+WQ R+ISNFEYLM+LNT+AGR+YND QYPVFPWV+ +Y S+ L+L P FRDLS
Sbjct: 2541 MLQKWQKRDISNFEYLMYLNTLAGRTYNDYMQYPVFPWVLADYTSQTLNLMNPKTFRDLS 2600
Query: 214 KPIGALNPKRAAFFAERY---ESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
KP+GA +R F +R+ E E D + HY THYS+A V ++L+R+ PFT F +
Sbjct: 2601 KPMGAQTKERKLKFIQRFKEVEKTEGDVTARCHYCTHYSSAIIVASYLVRMPPFTQAFCS 2660
Query: 385 LQGGKFDHADRTFSSISRAWRNSQRDT-SDIKELIPEFYYLPEMFVNFNDYNLGVMDDGT 561
LQGG FD ADR F S+ AW ++ R+ SD++EL PEF+YLPE N N G M DGT
Sbjct: 2661 LQGGSFDVADRMFHSVKNAWESASRENMSDVRELTPEFFYLPEFLTNCNALEFGCMQDGT 2720
Query: 562 VVSDVELPPWA-RTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFY 738
+ DV+LPPWA +F+ ++R ALES+FVS LH WIDLIFGYKQQG AV A+N F+
Sbjct: 2721 ALGDVQLPPWADGDPRKFISLHRQALESDFVSANLHHWIDLIFGYKQQGSAAVEAVNTFH 2780
Query: 739 YLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASP 894
Y V+L+SISDP++R + + +FGQ P QL +PHP R +A + SP
Sbjct: 2781 PYFYGDKVDLSSISDPLIRSTILGFVSNFGQVPKQLFTKPHPARTAAGKPSP 2832
>ref|XP_002692713.1| PREDICTED: neutral sphingomyelinase (N-SMase) activation associated
factor [Bos taurus].
Length = 917
Score = 299 bits (766), Expect = 3e-81
Identities = 154/283 (54%), Positives = 198/283 (69%), Gaps = 1/283 (0%)
Frame = +1
Query: 25 ASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFR 204
A T +WQ +SN++YL+ LN++A RS +DL+QYPVFPWVI +Y S ELDL+ P FR
Sbjct: 298 AEGYTLQWQRGLLSNYQYLLHLNSLADRSCSDLSQYPVFPWVIGDYSSSELDLSNPETFR 357
Query: 205 DLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
DLSKP+GALN +R RY+ + P+F YG+HYS+ +VL +L+RI P Y L
Sbjct: 358 DLSKPVGALNQERLERLLTRYQEMPE---PRFMYGSHYSSPGYVLFYLVRIAP--EYMLC 412
Query: 385 LQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMF-VNFNDYNLGVMDDGT 561
LQ G+FD+ADR F+SI+ W+N +D KELIPEFY F VN +LG G
Sbjct: 413 LQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEFYGDDVSFLVNSLKLDLGKRQGGQ 472
Query: 562 VVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYY 741
+V+DVELPPWAR+ E+F+R +R ALESE+VS LH+WIDL+FGYKQQG +AV A NVF+
Sbjct: 473 LVNDVELPPWARSPEDFLRKSRAALESEYVSEHLHEWIDLVFGYKQQGQDAVGAHNVFHP 532
Query: 742 LTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPR 870
LTYEG V+LNSI DP + A+ +QI FGQTP QL + PHP R
Sbjct: 533 LTYEGGVDLNSIEDPDEKVAMLTQILEFGQTPRQLFVTPHPRR 575
>ref|XP_002697156.1| PREDICTED: neurobeachin-like 2 [Bos taurus].
Length = 2717
Score = 295 bits (754), Expect = 7e-80
Identities = 156/299 (52%), Positives = 200/299 (66%), Gaps = 3/299 (1%)
Frame = +1
Query: 4 SPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDL 183
SP+++ +AS +TQ+W REISNFEYLM LNTIAGR+YNDL+QYPVFPWV+ +Y S LDL
Sbjct: 2045 SPQEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTLDL 2104
Query: 184 TLPSNFRDLSKPIGALNPKRAAFFAERYESWED--DQVPKFHYGTHYSTASFVLAWLLRI 357
+ P+ FRDLSKPIG +NPK A E+YES+ED + KFHYGTHYS A+ V+ +L+R+
Sbjct: 2105 SNPAVFRDLSKPIGVVNPKHAQLVKEKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRV 2164
Query: 358 EPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYN 537
EPFT+ + LQ G+ A R W S +P F +
Sbjct: 2165 EPFTSLHVQLQSGRCGGAGR--------WSRQLTQPS-----VPGF-------------D 2198
Query: 538 LGVMD-DGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEA 714
LG + V DV LPPWA + E+F++ +R ALESE+VS LH+WIDLIFGYKQ+GP A
Sbjct: 2199 LGCLQLTNEKVGDVVLPPWASSPEDFIQQHRRALESEYVSAHLHEWIDLIFGYKQRGPAA 2258
Query: 715 VRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQAS 891
ALNVFYY TYEGAV+L+ ++D R+A+E I +FGQTP QLL EPHP R S +A+
Sbjct: 2259 EEALNVFYYCTYEGAVDLDQVADERERKALEGIISNFGQTPCQLLKEPHPARLSVEEAA 2317
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,245,686
Number of extensions: 1103811
Number of successful extensions: 3089
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3063
Number of HSP's successfully gapped: 15
Length of query: 393
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 289
Effective length of database: 14,240,222
Effective search space: 4115424158
Effective search space used: 4115424158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013496
(1180 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853523.1| PREDICTED: similar to LPS-responsive vesicle tr... 669 0.0
Alignment gi|XP_867504.1| PREDICTED: similar to LPS-responsive vesicle tr... 669 0.0
Alignment gi|XP_867486.1| PREDICTED: similar to LPS-responsive vesicle tr... 669 0.0
Alignment gi|XP_532687.2| PREDICTED: similar to LPS-responsive vesicle tr... 669 0.0
Alignment gi|XP_849213.1| PREDICTED: similar to neurobeachin isoform 2 [C... 573 e-179
Alignment gi|XP_534497.2| PREDICTED: similar to neurobeachin isoform 1 [C... 573 e-179
Alignment gi|XP_858318.1| PREDICTED: similar to neurobeachin isoform 4 [C... 573 e-179
Alignment gi|XP_858239.1| PREDICTED: similar to Neurobeachin protein (Lys... 573 e-179
Alignment gi|XP_541900.2| PREDICTED: similar to CG1332-PA [Canis familiar... 352 5e-97
Alignment gi|XP_544963.2| PREDICTED: similar to WD repeat and FYVE domain... 339 3e-93
>ref|XP_853523.1| PREDICTED: similar to LPS-responsive vesicle trafficking, beach and
anchor containing isoform 2 [Canis familiaris].
Length = 2863
Score = 669 bits (1727), Expect = 0.0
Identities = 324/331 (97%), Positives = 329/331 (99%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD
Sbjct: 2200 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 2259
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE
Sbjct: 2260 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2319
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTTYFLNLQGGKFDHADRTFSSISRAWRN QRDTSDIKELIPEFYYLPEMFVNFN+YNL
Sbjct: 2320 PFTTYFLNLQGGKFDHADRTFSSISRAWRNCQRDTSDIKELIPEFYYLPEMFVNFNNYNL 2379
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GVMDDGTVVSDVELPPWA+TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR
Sbjct: 2380 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2439
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 900
+LNVFYYLTYEGAVNLNSI+DPILREAVE+QIRSFGQTPSQLLIEPHPPRGSAMQ SPLM
Sbjct: 2440 SLNVFYYLTYEGAVNLNSIADPILREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVSPLM 2499
Query: 901 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 993
FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG
Sbjct: 2500 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 2530
Score = 123 bits (309), Expect = 3e-28
Identities = 63/80 (78%), Positives = 67/80 (83%)
Frame = +2
Query: 941 SSPPTPLSLTWRPTPSLGLAIPAVITVTANRLFAVNKWDNLPAHQGAVQDQPYQLPVEID 1120
+SP T ++ +P GLA PAVITVTANRLFAVNKW NLPAHQGAVQDQPYQLPVEID
Sbjct: 2517 NSPVTHVAANTQP----GLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEID 2572
Query: 1121 PLIASNTGMHRETITDLLDQ 1180
PLIASNTGMHR ITDLLDQ
Sbjct: 2573 PLIASNTGMHRRQITDLLDQ 2592
>ref|XP_867504.1| PREDICTED: similar to LPS-responsive vesicle trafficking, beach and
anchor containing isoform 5 [Canis familiaris].
Length = 743
Score = 669 bits (1727), Expect = 0.0
Identities = 324/331 (97%), Positives = 329/331 (99%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD
Sbjct: 80 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 139
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE
Sbjct: 140 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 199
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTTYFLNLQGGKFDHADRTFSSISRAWRN QRDTSDIKELIPEFYYLPEMFVNFN+YNL
Sbjct: 200 PFTTYFLNLQGGKFDHADRTFSSISRAWRNCQRDTSDIKELIPEFYYLPEMFVNFNNYNL 259
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GVMDDGTVVSDVELPPWA+TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR
Sbjct: 260 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 319
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 900
+LNVFYYLTYEGAVNLNSI+DPILREAVE+QIRSFGQTPSQLLIEPHPPRGSAMQ SPLM
Sbjct: 320 SLNVFYYLTYEGAVNLNSIADPILREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVSPLM 379
Query: 901 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 993
FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG
Sbjct: 380 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 410
Score = 123 bits (309), Expect = 3e-28
Identities = 63/80 (78%), Positives = 67/80 (83%)
Frame = +2
Query: 941 SSPPTPLSLTWRPTPSLGLAIPAVITVTANRLFAVNKWDNLPAHQGAVQDQPYQLPVEID 1120
+SP T ++ +P GLA PAVITVTANRLFAVNKW NLPAHQGAVQDQPYQLPVEID
Sbjct: 397 NSPVTHVAANTQP----GLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEID 452
Query: 1121 PLIASNTGMHRETITDLLDQ 1180
PLIASNTGMHR ITDLLDQ
Sbjct: 453 PLIASNTGMHRRQITDLLDQ 472
>ref|XP_867486.1| PREDICTED: similar to LPS-responsive vesicle trafficking, beach and
anchor containing isoform 3 [Canis familiaris].
Length = 707
Score = 669 bits (1727), Expect = 0.0
Identities = 324/331 (97%), Positives = 329/331 (99%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD
Sbjct: 44 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 103
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE
Sbjct: 104 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 163
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTTYFLNLQGGKFDHADRTFSSISRAWRN QRDTSDIKELIPEFYYLPEMFVNFN+YNL
Sbjct: 164 PFTTYFLNLQGGKFDHADRTFSSISRAWRNCQRDTSDIKELIPEFYYLPEMFVNFNNYNL 223
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GVMDDGTVVSDVELPPWA+TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR
Sbjct: 224 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 283
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 900
+LNVFYYLTYEGAVNLNSI+DPILREAVE+QIRSFGQTPSQLLIEPHPPRGSAMQ SPLM
Sbjct: 284 SLNVFYYLTYEGAVNLNSIADPILREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVSPLM 343
Query: 901 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 993
FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG
Sbjct: 344 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 374
Score = 123 bits (309), Expect = 3e-28
Identities = 63/80 (78%), Positives = 67/80 (83%)
Frame = +2
Query: 941 SSPPTPLSLTWRPTPSLGLAIPAVITVTANRLFAVNKWDNLPAHQGAVQDQPYQLPVEID 1120
+SP T ++ +P GLA PAVITVTANRLFAVNKW NLPAHQGAVQDQPYQLPVEID
Sbjct: 361 NSPVTHVAANTQP----GLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEID 416
Query: 1121 PLIASNTGMHRETITDLLDQ 1180
PLIASNTGMHR ITDLLDQ
Sbjct: 417 PLIASNTGMHRRQITDLLDQ 436
>ref|XP_532687.2| PREDICTED: similar to LPS-responsive vesicle trafficking, beach and
anchor containing isoform 1 [Canis familiaris].
Length = 2852
Score = 669 bits (1727), Expect = 0.0
Identities = 324/331 (97%), Positives = 329/331 (99%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD
Sbjct: 2189 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 2248
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE
Sbjct: 2249 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2308
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTTYFLNLQGGKFDHADRTFSSISRAWRN QRDTSDIKELIPEFYYLPEMFVNFN+YNL
Sbjct: 2309 PFTTYFLNLQGGKFDHADRTFSSISRAWRNCQRDTSDIKELIPEFYYLPEMFVNFNNYNL 2368
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GVMDDGTVVSDVELPPWA+TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR
Sbjct: 2369 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2428
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 900
+LNVFYYLTYEGAVNLNSI+DPILREAVE+QIRSFGQTPSQLLIEPHPPRGSAMQ SPLM
Sbjct: 2429 SLNVFYYLTYEGAVNLNSIADPILREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVSPLM 2488
Query: 901 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 993
FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG
Sbjct: 2489 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 2519
Score = 123 bits (309), Expect = 3e-28
Identities = 63/80 (78%), Positives = 67/80 (83%)
Frame = +2
Query: 941 SSPPTPLSLTWRPTPSLGLAIPAVITVTANRLFAVNKWDNLPAHQGAVQDQPYQLPVEID 1120
+SP T ++ +P GLA PAVITVTANRLFAVNKW NLPAHQGAVQDQPYQLPVEID
Sbjct: 2506 NSPVTHVAANTQP----GLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEID 2561
Query: 1121 PLIASNTGMHRETITDLLDQ 1180
PLIASNTGMHR ITDLLDQ
Sbjct: 2562 PLIASNTGMHRRQITDLLDQ 2581
>ref|XP_849213.1| PREDICTED: similar to neurobeachin isoform 2 [Canis familiaris].
Length = 2952
Score = 573 bits (1478), Expect(2) = e-179
Identities = 272/335 (81%), Positives = 303/335 (90%), Gaps = 5/335 (1%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
A+PRQL+K+SNMTQRWQ REISNFEYLMFLNTIAGR+YNDLNQYPVFPWV+TNYESEELD
Sbjct: 2280 ATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELD 2339
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLP NFRDLSKPIGALNPKRA F+AERYE+WEDDQ P +HY THYSTA+ L+WL+RIE
Sbjct: 2340 LTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIE 2399
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTT+FLN GKFDH DRTFSS++R+WR SQRDTSD+KELIPEFYYLPEMFVN N YNL
Sbjct: 2400 PFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYNL 2459
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GV +D VV+DV LPPWA+ E+FVRINR+ALESEFVSCQLHQWIDLIFGYKQ+GPEAVR
Sbjct: 2460 GVREDEVVVNDVGLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVR 2519
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQ----- 885
ALNVF+YLTYEG+VNL+SI+DP+LREA+E+QI++FGQTPSQLLIEPHPPR SAM
Sbjct: 2520 ALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLP 2579
Query: 886 ASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQP 990
SPLMF DQ QQDVIMVLKFPSNSPVTHVAANT P
Sbjct: 2580 QSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLP 2614
Score = 73.9 bits (180), Expect(2) = e-179
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Frame = +2
Query: 995 LAIPAVITVTANRLFAVNKWDNLPAHQGAVQ---DQPYQLPVEIDPLIASNTGMHRETIT 1165
L IPAV+TVT +RLFAVN+W N +GA DQ + LP+E+DPLIA+N+G+++ IT
Sbjct: 2616 LTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQIT 2675
Query: 1166 DLLDQ 1180
DL+DQ
Sbjct: 2676 DLVDQ 2680
>ref|XP_534497.2| PREDICTED: similar to neurobeachin isoform 1 [Canis familiaris].
Length = 2949
Score = 573 bits (1478), Expect(2) = e-179
Identities = 272/335 (81%), Positives = 303/335 (90%), Gaps = 5/335 (1%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
A+PRQL+K+SNMTQRWQ REISNFEYLMFLNTIAGR+YNDLNQYPVFPWV+TNYESEELD
Sbjct: 2277 ATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELD 2336
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLP NFRDLSKPIGALNPKRA F+AERYE+WEDDQ P +HY THYSTA+ L+WL+RIE
Sbjct: 2337 LTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIE 2396
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTT+FLN GKFDH DRTFSS++R+WR SQRDTSD+KELIPEFYYLPEMFVN N YNL
Sbjct: 2397 PFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYNL 2456
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GV +D VV+DV LPPWA+ E+FVRINR+ALESEFVSCQLHQWIDLIFGYKQ+GPEAVR
Sbjct: 2457 GVREDEVVVNDVGLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVR 2516
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQ----- 885
ALNVF+YLTYEG+VNL+SI+DP+LREA+E+QI++FGQTPSQLLIEPHPPR SAM
Sbjct: 2517 ALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLP 2576
Query: 886 ASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQP 990
SPLMF DQ QQDVIMVLKFPSNSPVTHVAANT P
Sbjct: 2577 QSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLP 2611
Score = 73.9 bits (180), Expect(2) = e-179
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Frame = +2
Query: 995 LAIPAVITVTANRLFAVNKWDNLPAHQGAVQ---DQPYQLPVEIDPLIASNTGMHRETIT 1165
L IPAV+TVT +RLFAVN+W N +GA DQ + LP+E+DPLIA+N+G+++ IT
Sbjct: 2613 LTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQIT 2672
Query: 1166 DLLDQ 1180
DL+DQ
Sbjct: 2673 DLVDQ 2677
>ref|XP_858318.1| PREDICTED: similar to neurobeachin isoform 4 [Canis familiaris].
Length = 2920
Score = 573 bits (1478), Expect(2) = e-179
Identities = 272/335 (81%), Positives = 303/335 (90%), Gaps = 5/335 (1%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
A+PRQL+K+SNMTQRWQ REISNFEYLMFLNTIAGR+YNDLNQYPVFPWV+TNYESEELD
Sbjct: 2248 ATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELD 2307
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLP NFRDLSKPIGALNPKRA F+AERYE+WEDDQ P +HY THYSTA+ L+WL+RIE
Sbjct: 2308 LTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIE 2367
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTT+FLN GKFDH DRTFSS++R+WR SQRDTSD+KELIPEFYYLPEMFVN N YNL
Sbjct: 2368 PFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYNL 2427
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GV +D VV+DV LPPWA+ E+FVRINR+ALESEFVSCQLHQWIDLIFGYKQ+GPEAVR
Sbjct: 2428 GVREDEVVVNDVGLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVR 2487
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQ----- 885
ALNVF+YLTYEG+VNL+SI+DP+LREA+E+QI++FGQTPSQLLIEPHPPR SAM
Sbjct: 2488 ALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLP 2547
Query: 886 ASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQP 990
SPLMF DQ QQDVIMVLKFPSNSPVTHVAANT P
Sbjct: 2548 QSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLP 2582
Score = 73.9 bits (180), Expect(2) = e-179
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Frame = +2
Query: 995 LAIPAVITVTANRLFAVNKWDNLPAHQGAVQ---DQPYQLPVEIDPLIASNTGMHRETIT 1165
L IPAV+TVT +RLFAVN+W N +GA DQ + LP+E+DPLIA+N+G+++ IT
Sbjct: 2584 LTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQIT 2643
Query: 1166 DLLDQ 1180
DL+DQ
Sbjct: 2644 DLVDQ 2648
>ref|XP_858239.1| PREDICTED: similar to Neurobeachin protein (Lysosomal trafficking
regulator 2) (BCL8B protein) isoform 3 [Canis
familiaris].
Length = 739
Score = 573 bits (1478), Expect(2) = e-179
Identities = 272/335 (81%), Positives = 303/335 (90%), Gaps = 5/335 (1%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
A+PRQL+K+SNMTQRWQ REISNFEYLMFLNTIAGR+YNDLNQYPVFPWV+TNYESEELD
Sbjct: 67 ATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELD 126
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLP NFRDLSKPIGALNPKRA F+AERYE+WEDDQ P +HY THYSTA+ L+WL+RIE
Sbjct: 127 LTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIE 186
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTT+FLN GKFDH DRTFSS++R+WR SQRDTSD+KELIPEFYYLPEMFVN N YNL
Sbjct: 187 PFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYNL 246
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GV +D VV+DV LPPWA+ E+FVRINR+ALESEFVSCQLHQWIDLIFGYKQ+GPEAVR
Sbjct: 247 GVREDEVVVNDVGLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVR 306
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQ----- 885
ALNVF+YLTYEG+VNL+SI+DP+LREA+E+QI++FGQTPSQLLIEPHPPR SAM
Sbjct: 307 ALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLP 366
Query: 886 ASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQP 990
SPLMF DQ QQDVIMVLKFPSNSPVTHVAANT P
Sbjct: 367 QSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLP 401
Score = 73.9 bits (180), Expect(2) = e-179
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Frame = +2
Query: 995 LAIPAVITVTANRLFAVNKWDNLPAHQGAVQ---DQPYQLPVEIDPLIASNTGMHRETIT 1165
L IPAV+TVT +RLFAVN+W N +GA DQ + LP+E+DPLIA+N+G+++ IT
Sbjct: 403 LTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQIT 462
Query: 1166 DLLDQ 1180
DL+DQ
Sbjct: 463 DLVDQ 467
>ref|XP_541900.2| PREDICTED: similar to CG1332-PA [Canis familiaris].
Length = 2305
Score = 352 bits (902), Expect = 5e-97
Identities = 171/299 (57%), Positives = 222/299 (74%), Gaps = 3/299 (1%)
Frame = +1
Query: 4 SPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDL 183
SP+++ +AS +TQ+W REISNFEYLM LNTIAGR+YNDL+QYPVFPWV+ +Y S LDL
Sbjct: 1583 SPQEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTLDL 1642
Query: 184 TLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQ--VPKFHYGTHYSTASFVLAWLLRI 357
+ P+ FRDLSKPIG +NPK A E+YES+ED + KFHYGTHYS A+ V+ +L+R+
Sbjct: 1643 SNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRV 1702
Query: 358 EPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYN 537
EPFT+ + LQ G+FD +DR F S++ AW+ +D+KELIPEF+Y P+ N N ++
Sbjct: 1703 EPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFD 1762
Query: 538 LGVMD-DGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEA 714
LG + V DV LPPWA + E+F++ +R ALESE+VS LH+WIDLIFGYKQ+GP A
Sbjct: 1763 LGCLQLTNEKVGDVVLPPWASSPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAA 1822
Query: 715 VRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQAS 891
ALNVFYY TYEGAV+L+ + D R+A+E I +FGQTP QLL EPHP R SA +A+
Sbjct: 1823 EEALNVFYYCTYEGAVDLDHVVDERERKALEGIISNFGQTPCQLLKEPHPARLSAEEAA 1881
>ref|XP_544963.2| PREDICTED: similar to WD repeat and FYVE domain containing 3 isoform
1 isoform 1 [Canis familiaris].
Length = 3527
Score = 339 bits (870), Expect = 3e-93
Identities = 159/284 (55%), Positives = 213/284 (75%), Gaps = 4/284 (1%)
Frame = +1
Query: 31 NMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDL 210
++TQRW+ EISNF+YLM LNT+AGRSYNDL QYPVFPW++ +Y+SEE+DLT P FR+L
Sbjct: 2694 SVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNL 2753
Query: 211 SKPIGALNPKRAAFFAERYESWED--DQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
+KP+GA +R A + +RY+ WED + P +HYGTHYS+A V ++L+R+EPFT FL
Sbjct: 2754 AKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLR 2813
Query: 385 LQGGKFDHADRTFSSISRAWRN-SQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGT 561
LQGG FD ADR F S+ AW + S+ + +D+KELIPEF+YLPE N N+++LG +GT
Sbjct: 2814 LQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGT 2873
Query: 562 VVSDVELPPWAR-TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFY 738
+ DV LPPWA+ EF+R++R ALE ++VS LH+WIDLIFGYKQQGP AV A+NVF+
Sbjct: 2874 KLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFH 2933
Query: 739 YLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPR 870
+L YEG V++ +I+DP+ A I +FGQ P QL +PHPP+
Sbjct: 2934 HLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPK 2977
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,170,905
Number of extensions: 1133213
Number of successful extensions: 3151
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 3119
Number of HSP's successfully gapped: 25
Length of query: 393
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 288
Effective length of database: 15,374,224
Effective search space: 4427776512
Effective search space used: 4427776512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013496
(1180 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357047.1| PREDICTED: lipopolysaccharide-responsive and... 553 e-158
Alignment gi|XP_001926773.3| PREDICTED: WD repeat- and FYVE domain-contai... 309 2e-84
Alignment gi|XP_001927410.2| PREDICTED: protein FAN [Sus scrofa]. 298 4e-81
Alignment gi|XP_001925835.3| PREDICTED: LOW QUALITY PROTEIN: lysosomal-tr... 224 6e-59
Alignment gi|XP_003361477.1| PREDICTED: neurobeachin-like protein 1-like,... 222 4e-58
Alignment gi|XP_003130974.2| PREDICTED: neurobeachin [Sus scrofa]. 158 6e-39
Alignment gi|XP_003361610.1| PREDICTED: neurobeachin-like, partial [Sus s... 140 1e-33
>ref|XP_003357047.1| PREDICTED: lipopolysaccharide-responsive and beige-like anchor
protein, partial [Sus scrofa].
Length = 2047
Score = 553 bits (1424), Expect = e-158
Identities = 267/271 (98%), Positives = 268/271 (98%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD
Sbjct: 1731 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 1790
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE
Sbjct: 1791 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 1850
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL
Sbjct: 1851 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 1910
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR
Sbjct: 1911 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 1970
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQ 813
ALNVFYYLTYEGAVNLNSISDPILRE V +
Sbjct: 1971 ALNVFYYLTYEGAVNLNSISDPILRENVSQR 2001
>ref|XP_001926773.3| PREDICTED: WD repeat- and FYVE domain-containing protein 4 [Sus
scrofa].
Length = 3185
Score = 309 bits (791), Expect = 2e-84
Identities = 152/292 (52%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Frame = +1
Query: 34 MTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLS 213
M Q+WQ R+ISNFEYLM LNT+AGR+YND QYPVFPWV+ +Y S+ L+LT P FRDLS
Sbjct: 2539 MLQKWQKRDISNFEYLMHLNTMAGRTYNDYMQYPVFPWVLADYSSQTLNLTNPKTFRDLS 2598
Query: 214 KPIGALNPKRAAFFAERY---ESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
KP+GA +R F +R+ E E D + HY THYS+A V ++L+R+ PFT F +
Sbjct: 2599 KPMGAQTKERRLKFIQRFKEVEKTEGDMTVQCHYCTHYSSAIIVASYLVRMPPFTQAFCS 2658
Query: 385 LQGGKFDHADRTFSSISRAWRNSQRDT-SDIKELIPEFYYLPEMFVNFNDYNLGVMDDGT 561
LQGG FD ADR F S+ AW ++ R+ SD++EL PEF+YLPE N N G M DGT
Sbjct: 2659 LQGGSFDVADRMFHSMKNAWESASRENMSDVRELTPEFFYLPEFLTNCNALEFGCMQDGT 2718
Query: 562 VVSDVELPPWA-RTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFY 738
+ DV+LPPWA +F+ ++R ALES+FVS LH WIDLIFGYKQQG AV A+N F+
Sbjct: 2719 ALGDVQLPPWADGDPRKFISLHRQALESDFVSANLHHWIDLIFGYKQQGSAAVEAVNTFH 2778
Query: 739 YLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASP 894
Y ++L+SI DP++R + + +FGQ P QL +PHP R +A + SP
Sbjct: 2779 PYFYGDKMDLSSIRDPLIRSTILGFVSNFGQVPRQLFTKPHPARTAAGKPSP 2830
>ref|XP_001927410.2| PREDICTED: protein FAN [Sus scrofa].
Length = 912
Score = 298 bits (763), Expect = 4e-81
Identities = 154/283 (54%), Positives = 197/283 (69%), Gaps = 1/283 (0%)
Frame = +1
Query: 25 ASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFR 204
A + +WQ +SN++YL+ LNT+A RS NDL+QYPVFPWVI++Y S ELDL+ P FR
Sbjct: 293 AESYMLQWQRGHLSNYQYLLHLNTLADRSCNDLSQYPVFPWVISDYCSAELDLSNPGTFR 352
Query: 205 DLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
DLSKP+GALN +R RY+ + PKF YG+HYS+ +VL +L+RI P Y L
Sbjct: 353 DLSKPVGALNKERLERLLTRYQEMPE---PKFMYGSHYSSPGYVLFYLVRIAP--EYMLC 407
Query: 385 LQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMF-VNFNDYNLGVMDDGT 561
LQ G+FDHADR F+SI+ WRN +D KELIPEFY F VN +LG G
Sbjct: 408 LQNGRFDHADRMFNSIAETWRNCLDGATDFKELIPEFYGEDVSFLVNSLRLDLGKKQGGQ 467
Query: 562 VVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYY 741
+V DVELPPWA++ E+F++ +R ALES+ VS LH+WIDL+FGYKQ+G +AV A NVF+
Sbjct: 468 LVEDVELPPWAQSPEDFLQKSRDALESDHVSEHLHEWIDLVFGYKQKGRDAVEAHNVFHP 527
Query: 742 LTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPR 870
LTYEG V+LNSI DP + A+ +QI FGQTP QL + PHP R
Sbjct: 528 LTYEGGVDLNSIEDPDEKVALLTQILEFGQTPKQLFVTPHPRR 570
>ref|XP_001925835.3| PREDICTED: LOW QUALITY PROTEIN: lysosomal-trafficking regulator [Sus
scrofa].
Length = 3443
Score = 224 bits (572), Expect = 6e-59
Identities = 118/249 (47%), Positives = 162/249 (65%), Gaps = 14/249 (5%)
Frame = +1
Query: 34 MTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLS 213
+T W +I+NFEYL LN AGRS+NDL QYPVFP+++ +Y SE LDL+ PS +R+LS
Sbjct: 2959 LTNLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVSETLDLSDPSVYRNLS 3018
Query: 214 KPIGALNPKRAAFFAERYE---------SWEDDQVP---KFHYGTHYSTASFVLAWLLRI 357
KPI ++ + + Y+ + EDD +P +HYG+HYS + VL +L+R+
Sbjct: 3019 KPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRM 3078
Query: 358 EPFTTYFLNLQGGKFDHADRTFSSISRAWR-NSQRDTSDIKELIPEFYYLPEMFVNFNDY 534
PFT FL Q FD DRTF S + WR +S +D+KELIPEF+YLPE VN +
Sbjct: 3079 PPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIPEFFYLPEFLVNREGF 3138
Query: 535 NLGVMDDGTVVSDVELPPWARTSEE-FVRINRLALESEFVSCQLHQWIDLIFGYKQQGPE 711
+ GV +G V+ V LPPWAR F+ I+R ALES++VS + QWIDL+FGYKQ+G
Sbjct: 3139 DFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNICQWIDLVFGYKQKGKA 3198
Query: 712 AVRALNVFY 738
+V+A+NVF+
Sbjct: 3199 SVQAINVFH 3207
>ref|XP_003361477.1| PREDICTED: neurobeachin-like protein 1-like, partial [Sus scrofa].
Length = 667
Score = 222 bits (565), Expect = 4e-58
Identities = 127/286 (44%), Positives = 164/286 (57%), Gaps = 62/286 (21%)
Frame = +1
Query: 121 LNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQ--VP 294
LN FPW++ +Y SEELDL PS FRDLSKPIG +N K A E+YE++ED +
Sbjct: 196 LNFKKEFPWILQDYTSEELDLNNPSVFRDLSKPIGVVNDKNAKAMREKYENFEDPMGTID 255
Query: 295 KFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDI 474
KFHYGTHYS ++ V+ +L+R EPFTT + LQ G+FD ADR F SI W+ + D+
Sbjct: 256 KFHYGTHYSNSAGVMHYLIRTEPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNPYDV 315
Query: 475 KELIPEFYYLPEMFVNFNDYNLGVMD-DGTVVSDVELPPWARTSEEFV------------ 615
KELIPEF+Y PE N N +NLG + VV+DV LP WA+++E+F+
Sbjct: 316 KELIPEFFYFPEFLENQNKFNLGRLQVSKEVVNDVILPKWAKSAEDFIYKHRKALSQKIS 375
Query: 616 -------RINRL--------------------------------ALESEFVSCQLHQWID 678
R+ RL LESE+VS LH+WID
Sbjct: 376 FSRGISSRVARLLTWQPRTPLGCKSGSFYTFLRLKAANCRCHFCRLESEYVSAHLHEWID 435
Query: 679 LIFGYKQQGPEAVRALNVFYYLTYE-----GAVNL---NSISDPIL 792
LIFGYKQ+GP AV ALNVFYY +YE G +NL +S+S+P+L
Sbjct: 436 LIFGYKQRGPAAVEALNVFYYCSYEAYKTGGKLNLSHKSSVSNPVL 481
>ref|XP_003130974.2| PREDICTED: neurobeachin [Sus scrofa].
Length = 3207
Score = 158 bits (399), Expect = 6e-39
Identities = 75/97 (77%), Positives = 90/97 (92%)
Frame = +1
Query: 631 ALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSISDPILREAVES 810
ALESEFVSCQLHQWIDLIFGYKQ+GPEAVRALNVF+YLTYEG+VNL+SI+DP+LREA+E+
Sbjct: 3041 ALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEA 3100
Query: 811 QIRSFGQTPSQLLIEPHPPRGSAMQASPLMFTDQAQQ 921
QI++FGQTPSQLLIEPHPPR SAM L+F ++ ++
Sbjct: 3101 QIQNFGQTPSQLLIEPHPPRSSAMHLM-LLFCEERER 3136
>ref|XP_003361610.1| PREDICTED: neurobeachin-like, partial [Sus scrofa].
Length = 260
Score = 140 bits (354), Expect = 1e-33
Identities = 64/72 (88%), Positives = 69/72 (95%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
A+PRQL+K+SNMTQRWQ REISNFEY MFLNTIAGR+YNDLNQYPVFPWV+TNYESEELD
Sbjct: 189 ATPRQLYKSSNMTQRWQRREISNFEYFMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELD 248
Query: 181 LTLPSNFRDLSK 216
LTLP NFRDLSK
Sbjct: 249 LTLPGNFRDLSK 260
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,767,032
Number of extensions: 704601
Number of successful extensions: 1970
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1957
Number of HSP's successfully gapped: 8
Length of query: 393
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,829,335
Effective search space: 2578165820
Effective search space used: 2578165820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013496
(1180 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_109620.2| lipopolysaccharide-responsive and beige-like an... 671 0.0
Alignment gi|NP_001071156.1| lipopolysaccharide-responsive and beige-like... 671 0.0
Alignment gi|NP_001071155.1| lipopolysaccharide-responsive and beige-like... 671 0.0
Alignment gi|NP_085098.1| neurobeachin [Mus musculus]. 573 e-179
Alignment gi|NP_775620.2| neurobeachin like 1 [Mus musculus]. 358 3e-99
Alignment gi|NP_899099.2| neurobeachin-like protein 2 [Mus musculus]. 353 1e-97
Alignment gi|NP_766470.2| WD repeat and FYVE domain-containing protein 3 ... 340 2e-93
Alignment gi|NP_001139494.1| WD repeat and FYVE domain containing 4 [Mus ... 310 1e-84
Alignment gi|NP_035075.2| protein FAN [Mus musculus]. 288 4e-78
Alignment gi|NP_034878.2| lysosomal-trafficking regulator [Mus musculus]. 254 7e-68
>ref|NP_109620.2| lipopolysaccharide-responsive and beige-like anchor protein isoform
alpha [Mus musculus].
Length = 2854
Score = 671 bits (1730), Expect = 0.0
Identities = 323/331 (97%), Positives = 331/331 (100%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
A+PRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD
Sbjct: 2191 ATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 2250
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLPSNFRDLSKPIGALNPKRAAFFAER+ESWEDDQVPKFHYGTHYSTASFVLAWLLRIE
Sbjct: 2251 LTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2310
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTTYFLNLQGGKFDHADRTFSS+SRAWRNSQRDTSDIKELIPEFYYLPEMFVNFN+YNL
Sbjct: 2311 PFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNL 2370
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GVMDDGTVVSDVELPPWA+TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR
Sbjct: 2371 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2430
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 900
ALNVFYYLTYEGAVNLNSI+DP+LREAVE+QIRSFGQTPSQLLIEPHPPRGSAMQASPLM
Sbjct: 2431 ALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 2490
Query: 901 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 993
FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG
Sbjct: 2491 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 2521
Score = 117 bits (293), Expect = 2e-26
Identities = 59/80 (73%), Positives = 65/80 (81%)
Frame = +2
Query: 941 SSPPTPLSLTWRPTPSLGLAIPAVITVTANRLFAVNKWDNLPAHQGAVQDQPYQLPVEID 1120
+SP T ++ +P GLA+PAVITVTANRLFAVNKW NLPAHQGAVQDQPYQLPVEID
Sbjct: 2508 NSPVTHVAANTQP----GLAMPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEID 2563
Query: 1121 PLIASNTGMHRETITDLLDQ 1180
PLIA TG HR +TDLLDQ
Sbjct: 2564 PLIACGTGTHRRQVTDLLDQ 2583
>ref|NP_001071156.1| lipopolysaccharide-responsive and beige-like anchor protein isoform
beta [Mus musculus].
Length = 2790
Score = 671 bits (1730), Expect = 0.0
Identities = 323/331 (97%), Positives = 331/331 (100%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
A+PRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD
Sbjct: 2191 ATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 2250
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLPSNFRDLSKPIGALNPKRAAFFAER+ESWEDDQVPKFHYGTHYSTASFVLAWLLRIE
Sbjct: 2251 LTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2310
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTTYFLNLQGGKFDHADRTFSS+SRAWRNSQRDTSDIKELIPEFYYLPEMFVNFN+YNL
Sbjct: 2311 PFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNL 2370
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GVMDDGTVVSDVELPPWA+TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR
Sbjct: 2371 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2430
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 900
ALNVFYYLTYEGAVNLNSI+DP+LREAVE+QIRSFGQTPSQLLIEPHPPRGSAMQASPLM
Sbjct: 2431 ALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 2490
Query: 901 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 993
FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG
Sbjct: 2491 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 2521
Score = 117 bits (293), Expect = 2e-26
Identities = 59/80 (73%), Positives = 65/80 (81%)
Frame = +2
Query: 941 SSPPTPLSLTWRPTPSLGLAIPAVITVTANRLFAVNKWDNLPAHQGAVQDQPYQLPVEID 1120
+SP T ++ +P GLA+PAVITVTANRLFAVNKW NLPAHQGAVQDQPYQLPVEID
Sbjct: 2508 NSPVTHVAANTQP----GLAMPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEID 2563
Query: 1121 PLIASNTGMHRETITDLLDQ 1180
PLIA TG HR +TDLLDQ
Sbjct: 2564 PLIACGTGTHRRQVTDLLDQ 2583
>ref|NP_001071155.1| lipopolysaccharide-responsive and beige-like anchor protein isoform
gamma [Mus musculus].
Length = 2577
Score = 671 bits (1730), Expect = 0.0
Identities = 323/331 (97%), Positives = 331/331 (100%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
A+PRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD
Sbjct: 2191 ATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 2250
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLPSNFRDLSKPIGALNPKRAAFFAER+ESWEDDQVPKFHYGTHYSTASFVLAWLLRIE
Sbjct: 2251 LTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2310
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTTYFLNLQGGKFDHADRTFSS+SRAWRNSQRDTSDIKELIPEFYYLPEMFVNFN+YNL
Sbjct: 2311 PFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNL 2370
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GVMDDGTVVSDVELPPWA+TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR
Sbjct: 2371 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2430
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 900
ALNVFYYLTYEGAVNLNSI+DP+LREAVE+QIRSFGQTPSQLLIEPHPPRGSAMQASPLM
Sbjct: 2431 ALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 2490
Query: 901 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 993
FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG
Sbjct: 2491 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 2521
Score = 95.1 bits (235), Expect = 9e-20
Identities = 48/63 (76%), Positives = 53/63 (84%)
Frame = +2
Query: 941 SSPPTPLSLTWRPTPSLGLAIPAVITVTANRLFAVNKWDNLPAHQGAVQDQPYQLPVEID 1120
+SP T ++ +P GLA+PAVITVTANRLFAVNKW NLPAHQGAVQDQPYQLPVEID
Sbjct: 2508 NSPVTHVAANTQP----GLAMPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEID 2563
Query: 1121 PLI 1129
PLI
Sbjct: 2564 PLI 2566
>ref|NP_085098.1| neurobeachin [Mus musculus].
Length = 2936
Score = 573 bits (1477), Expect(2) = e-179
Identities = 272/335 (81%), Positives = 304/335 (90%), Gaps = 5/335 (1%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
A+PRQL+K+SNMTQRWQ REISNFEYLMFLNTIAGR+YNDLNQYPVFPWV+TNYESEELD
Sbjct: 2264 ATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELD 2323
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLP NFRDLSKPIGALNPKRA F+AERYE+WE+DQ P FHY THYSTA+ L+WL+RIE
Sbjct: 2324 LTLPGNFRDLSKPIGALNPKRAVFYAERYETWEEDQSPPFHYNTHYSTATSALSWLVRIE 2383
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTT+FLN GKFDH DRTFSSI+R+WR SQRDTSD+KELIPEFYYLPEMFVN N Y+L
Sbjct: 2384 PFTTFFLNANDGKFDHPDRTFSSIARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYHL 2443
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GV +D VV+DV+LPPWA+ E+FVRINR+ALESEFVSCQLHQWIDLIFGYKQ+GPEAVR
Sbjct: 2444 GVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVR 2503
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQ----- 885
ALNVF+YLTYEG+VNL+SI+DP+LREA+E+QI++FGQTPSQLLIEPHPPR SAM
Sbjct: 2504 ALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLP 2563
Query: 886 ASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQP 990
SPLMF DQ QQDVIMVLKFPSNSPVTHVAANT P
Sbjct: 2564 QSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLP 2598
Score = 73.9 bits (180), Expect(2) = e-179
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Frame = +2
Query: 995 LAIPAVITVTANRLFAVNKWDNLPAHQGAVQ---DQPYQLPVEIDPLIASNTGMHRETIT 1165
L IPAV+TVT +RLFAVN+W N +GA DQ + LP+E+DPLIA+N+G+++ IT
Sbjct: 2600 LTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQIT 2659
Query: 1166 DLLDQ 1180
DL+DQ
Sbjct: 2660 DLVDQ 2664
>ref|NP_775620.2| neurobeachin like 1 [Mus musculus].
Length = 2688
Score = 358 bits (920), Expect = 3e-99
Identities = 172/298 (57%), Positives = 228/298 (76%), Gaps = 3/298 (1%)
Frame = +1
Query: 4 SPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDL 183
SP++LFKAS +TQ+W +REI+NF+YL+ +NT+AGR+YNDL QYPVFPW++ +Y SEELDL
Sbjct: 1987 SPQELFKASGLTQKWVNREITNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDL 2046
Query: 184 TLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQ--VPKFHYGTHYSTASFVLAWLLRI 357
P+ FRDLSKPIG +N K A E+YE++ED + KFHYGTHYS ++ V+ +L+R+
Sbjct: 2047 NNPTVFRDLSKPIGVVNEKNAKAMREKYENFEDPMGTIDKFHYGTHYSNSAGVMHYLIRV 2106
Query: 358 EPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYN 537
EPFTT + LQ G+FD ADR F SI W+ +T D+KELIPEF+Y PE N N++N
Sbjct: 2107 EPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNTYDVKELIPEFFYFPEFLENQNEFN 2166
Query: 538 LGVMD-DGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEA 714
LG + +V+DV LP WA+++E+F+ +R ALESE+VS LH+WIDLIFGYKQ+GP A
Sbjct: 2167 LGHLQVSKELVNDVILPRWAKSAEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAA 2226
Query: 715 VRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQA 888
V ALNVFYY +YEGAV+L++++D R+A+E I +FGQTP QLL EPHPPR SA +A
Sbjct: 2227 VEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEA 2284
>ref|NP_899099.2| neurobeachin-like protein 2 [Mus musculus].
Length = 2750
Score = 353 bits (907), Expect = 1e-97
Identities = 172/299 (57%), Positives = 223/299 (74%), Gaps = 3/299 (1%)
Frame = +1
Query: 4 SPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDL 183
SP ++ +AS +TQ+W REISNFEYLM LNTIAGR+YNDL+QYPVFPWV+ +Y S LDL
Sbjct: 2050 SPLEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPVLDL 2109
Query: 184 TLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQ--VPKFHYGTHYSTASFVLAWLLRI 357
+ P+ FRDLSKPIG +NPK A E+YES+ED + KFHYGTHYS A+ V+ +L+R+
Sbjct: 2110 SNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRV 2169
Query: 358 EPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYN 537
EPFT+ + LQ G+FD +DR F S++ AW+ +D+KELIPEF+Y P+ N N ++
Sbjct: 2170 EPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFD 2229
Query: 538 LGVMD-DGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEA 714
LG + V DV LPPWA + E+F++ +R ALESE+VS LH+WIDLIFGYKQ+GP A
Sbjct: 2230 LGCLQLTNEKVGDVVLPPWAGSPEDFIQKHRQALESEYVSTHLHEWIDLIFGYKQRGPAA 2289
Query: 715 VRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQAS 891
ALNVFYY TYEGAV+L+ ++D R+A+E I +FGQTP QLL EPHPPR SA +A+
Sbjct: 2290 EEALNVFYYCTYEGAVDLDHVADERERKALEGIISNFGQTPCQLLKEPHPPRLSAEEAA 2348
>ref|NP_766470.2| WD repeat and FYVE domain-containing protein 3 [Mus musculus].
Length = 3508
Score = 340 bits (871), Expect = 2e-93
Identities = 159/284 (55%), Positives = 214/284 (75%), Gaps = 4/284 (1%)
Frame = +1
Query: 31 NMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDL 210
++TQRW+ EISNF+YLM LNT+AGRSYNDL QYPVFPW++++Y+SEE+DLT P FR+L
Sbjct: 2675 SVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILSDYDSEEVDLTNPKTFRNL 2734
Query: 211 SKPIGALNPKRAAFFAERYESWED--DQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
+KP+GA +R A + +RY+ WED + P +HYGTHYS+A V ++L+R+EPFT FL
Sbjct: 2735 AKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLR 2794
Query: 385 LQGGKFDHADRTFSSISRAWRN-SQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGT 561
LQGG FD ADR F S+ AW + S+ + +D+KELIPEF+YLPE N N+++LG +GT
Sbjct: 2795 LQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGT 2854
Query: 562 VVSDVELPPWAR-TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFY 738
+ DV LPPWA+ EF+R++R ALE ++VS LH+WIDLIFGYKQQGP AV A+NVF+
Sbjct: 2855 KLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFH 2914
Query: 739 YLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPR 870
+L YEG V++ +I+DP+ A I +FGQ P QL +PHPP+
Sbjct: 2915 HLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPK 2958
>ref|NP_001139494.1| WD repeat and FYVE domain containing 4 [Mus musculus].
Length = 3024
Score = 310 bits (794), Expect = 1e-84
Identities = 151/286 (52%), Positives = 195/286 (68%), Gaps = 5/286 (1%)
Frame = +1
Query: 34 MTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLS 213
M QRWQ REISNFEYLM+LNT+AGR+YND QYPVFPWV+ +Y SE L+LT P FRDLS
Sbjct: 2377 MLQRWQKREISNFEYLMYLNTLAGRTYNDYMQYPVFPWVLADYTSEMLNLTNPKTFRDLS 2436
Query: 214 KPIGALNPKRAAFFAERY---ESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
KP+GA +R F +R+ E E D + HY THYS+A V ++L+R+ PFT F +
Sbjct: 2437 KPMGAQTKERKLKFTQRFKDVEKIEGDMTVQCHYYTHYSSAIIVASYLVRMPPFTQAFCS 2496
Query: 385 LQGGKFDHADRTFSSISRAWRN-SQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGT 561
LQGG FD ADR F S+ W + S+ + SD++EL PEF+YLPE N N G M DGT
Sbjct: 2497 LQGGSFDVADRMFHSVKSTWESASKENMSDVRELTPEFFYLPEFLTNCNAVEFGCMQDGT 2556
Query: 562 VVSDVELPPWA-RTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFY 738
+ DV+LPPWA +F+ ++R ALES+FVS LH WIDLIFGYKQQGP AV A+N F+
Sbjct: 2557 TLGDVQLPPWADGDPRKFISLHRQALESDFVSSNLHHWIDLIFGYKQQGPAAVEAVNTFH 2616
Query: 739 YLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGS 876
Y ++L SI+DP+++ + I +FGQ P Q+ +PHP R +
Sbjct: 2617 PYFYGDRIDLGSITDPLIKSTILGFISNFGQVPKQIFTKPHPSRNT 2662
>ref|NP_035075.2| protein FAN [Mus musculus].
Length = 920
Score = 288 bits (738), Expect = 4e-78
Identities = 147/283 (51%), Positives = 195/283 (68%), Gaps = 1/283 (0%)
Frame = +1
Query: 25 ASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFR 204
A + +WQ +SN++YL+ LN +A RS NDL+QYPVFPW+I++Y S ELDL+ P+ FR
Sbjct: 298 AESYMLQWQRGHLSNYQYLLHLNNLADRSCNDLSQYPVFPWIISDYSSPELDLSNPATFR 357
Query: 205 DLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
DLSKP+GALN +R RY+ + P+F YG+HYS+ +VL +L+RI P Y L
Sbjct: 358 DLSKPVGALNAERLERLLTRYQEMPE---PRFMYGSHYSSPGYVLFYLVRIAP--EYMLC 412
Query: 385 LQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMF-VNFNDYNLGVMDDGT 561
LQ G+FD+ADR F+SI+ W+N +D KELIPEFY F VN +LG G
Sbjct: 413 LQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEFYDEDVSFLVNSLKLDLGKRQGGQ 472
Query: 562 VVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYY 741
+V DV+LP WA + ++F++ N+ ALES +VS LH+WIDLIFGYKQ+G EA+ A NVF+
Sbjct: 473 MVDDVDLPAWASSPQDFLQKNKDALESGYVSEHLHEWIDLIFGYKQKGSEAIGAHNVFHP 532
Query: 742 LTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPR 870
LTYEG V+LNSI DP + A+ +QI FGQTP QL + PHP R
Sbjct: 533 LTYEGGVDLNSIEDPDEKVAMLTQILEFGQTPKQLFVTPHPRR 575
>ref|NP_034878.2| lysosomal-trafficking regulator [Mus musculus].
Length = 3787
Score = 254 bits (650), Expect = 7e-68
Identities = 135/296 (45%), Positives = 190/296 (64%), Gaps = 14/296 (4%)
Frame = +1
Query: 34 MTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLS 213
+T W +I+NFEYL LN AGRS+NDL QYPVFP+++++Y SE LDL PS +R+LS
Sbjct: 3117 LTNLWYSGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILSDYVSETLDLNDPSIYRNLS 3176
Query: 214 KPIGALNPKRAAFFAERYE---------SWEDDQVP---KFHYGTHYSTASFVLAWLLRI 357
KPI ++ + + Y+ + EDD +P +HYG+HYS + VL +L+R+
Sbjct: 3177 KPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRM 3236
Query: 358 EPFTTYFLNLQGGKFDHADRTFSSISRAWR-NSQRDTSDIKELIPEFYYLPEMFVNFNDY 534
PFT FL Q FD DRTF S + WR +S +D+KELIPEF+YLPE VN +
Sbjct: 3237 PPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIPEFFYLPEFLVNREGF 3296
Query: 535 NLGVMDDGTVVSDVELPPWARTSEE-FVRINRLALESEFVSCQLHQWIDLIFGYKQQGPE 711
+ GV +G V+ V LPPWAR F+ I+R ALES+ VS + WIDL+FGYKQ+G
Sbjct: 3297 DFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDHVSQNICHWIDLVFGYKQKGKA 3356
Query: 712 AVRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSA 879
+V+A+NVF+ TY G ++++++ DP+ R A+E+ I+++GQTP QL H R A
Sbjct: 3357 SVQAINVFHPATYFG-MDVSAVEDPVQRRALETMIKTYGQTPRQLFHTAHASRPGA 3411
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,978,819
Number of extensions: 964579
Number of successful extensions: 2665
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2644
Number of HSP's successfully gapped: 15
Length of query: 393
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 290
Effective length of database: 12,523,851
Effective search space: 3631916790
Effective search space used: 3631916790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013496
(1180 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186211.2| lipopolysaccharide-responsive and beige-like... 667 0.0
Alignment gi|NP_006717.2| lipopolysaccharide-responsive and beige-like an... 667 0.0
Alignment gi|NP_056493.3| neurobeachin isoform 1 [Homo sapiens]. 575 e-179
Alignment gi|NP_001191126.1| neurobeachin isoform 2 [Homo sapiens]. 575 e-179
Alignment gi|NP_001107604.1| neurobeachin-like protein 1 [Homo sapiens]. 357 1e-98
Alignment gi|NP_055990.1| neurobeachin-like protein 2 [Homo sapiens]. 353 2e-97
Alignment gi|NP_055806.2| WD repeat and FYVE domain-containing protein 3 ... 339 3e-93
Alignment gi|NP_065996.1| WD repeat- and FYVE domain-containing protein 4... 305 7e-83
Alignment gi|NP_003571.2| protein FAN isoform 1 [Homo sapiens]. 291 6e-79
Alignment gi|NP_001138244.1| protein FAN isoform 2 [Homo sapiens]. 291 6e-79
>ref|NP_001186211.2| lipopolysaccharide-responsive and beige-like anchor protein isoform 1
[Homo sapiens].
Length = 2851
Score = 667 bits (1722), Expect = 0.0
Identities = 322/331 (97%), Positives = 329/331 (99%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD
Sbjct: 2189 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 2248
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLP+NFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE
Sbjct: 2249 LTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2308
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFN+YNL
Sbjct: 2309 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNL 2368
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GVMDDGTVVSDVELPPWA+TSEEFV INRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR
Sbjct: 2369 GVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2428
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 900
ALNVFYYLTYEGAVNLNSI+DP+LREAVE+QIRSFGQTPSQLLIEPHPPRGSAMQ SPLM
Sbjct: 2429 ALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVSPLM 2488
Query: 901 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 993
FTD+AQQDVIMVLKFPSNSPVTHVAANTQPG
Sbjct: 2489 FTDKAQQDVIMVLKFPSNSPVTHVAANTQPG 2519
Score = 123 bits (309), Expect = 3e-28
Identities = 63/80 (78%), Positives = 67/80 (83%)
Frame = +2
Query: 941 SSPPTPLSLTWRPTPSLGLAIPAVITVTANRLFAVNKWDNLPAHQGAVQDQPYQLPVEID 1120
+SP T ++ +P GLA PAVITVTANRLFAVNKW NLPAHQGAVQDQPYQLPVEID
Sbjct: 2506 NSPVTHVAANTQP----GLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEID 2561
Query: 1121 PLIASNTGMHRETITDLLDQ 1180
PLIASNTGMHR ITDLLDQ
Sbjct: 2562 PLIASNTGMHRRQITDLLDQ 2581
>ref|NP_006717.2| lipopolysaccharide-responsive and beige-like anchor protein isoform 2
[Homo sapiens].
Length = 2863
Score = 667 bits (1722), Expect = 0.0
Identities = 322/331 (97%), Positives = 329/331 (99%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD
Sbjct: 2200 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 2259
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLP+NFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE
Sbjct: 2260 LTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2319
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFN+YNL
Sbjct: 2320 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNL 2379
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GVMDDGTVVSDVELPPWA+TSEEFV INRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR
Sbjct: 2380 GVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2439
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLM 900
ALNVFYYLTYEGAVNLNSI+DP+LREAVE+QIRSFGQTPSQLLIEPHPPRGSAMQ SPLM
Sbjct: 2440 ALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVSPLM 2499
Query: 901 FTDQAQQDVIMVLKFPSNSPVTHVAANTQPG 993
FTD+AQQDVIMVLKFPSNSPVTHVAANTQPG
Sbjct: 2500 FTDKAQQDVIMVLKFPSNSPVTHVAANTQPG 2530
Score = 123 bits (309), Expect = 3e-28
Identities = 63/80 (78%), Positives = 67/80 (83%)
Frame = +2
Query: 941 SSPPTPLSLTWRPTPSLGLAIPAVITVTANRLFAVNKWDNLPAHQGAVQDQPYQLPVEID 1120
+SP T ++ +P GLA PAVITVTANRLFAVNKW NLPAHQGAVQDQPYQLPVEID
Sbjct: 2517 NSPVTHVAANTQP----GLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEID 2572
Query: 1121 PLIASNTGMHRETITDLLDQ 1180
PLIASNTGMHR ITDLLDQ
Sbjct: 2573 PLIASNTGMHRRQITDLLDQ 2592
>ref|NP_056493.3| neurobeachin isoform 1 [Homo sapiens].
Length = 2946
Score = 575 bits (1482), Expect(2) = e-179
Identities = 272/335 (81%), Positives = 304/335 (90%), Gaps = 5/335 (1%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
A+PRQL+K+SNMTQRWQ REISNFEYLMFLNTIAGR+YNDLNQYPVFPWV+TNYESEELD
Sbjct: 2274 ATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELD 2333
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLP NFRDLSKPIGALNPKRA F+AERYE+WEDDQ P +HY THYSTA+ L+WL+RIE
Sbjct: 2334 LTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIE 2393
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTT+FLN GKFDH DRTFSS++R+WR SQRDTSD+KELIPEFYYLPEMFVN N YNL
Sbjct: 2394 PFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYNL 2453
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GV +D VV+DV+LPPWA+ E+FVRINR+ALESEFVSCQLHQWIDLIFGYKQ+GPEAVR
Sbjct: 2454 GVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVR 2513
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQ----- 885
ALNVF+YLTYEG+VNL+SI+DP+LREA+E+QI++FGQTPSQLLIEPHPPR SAM
Sbjct: 2514 ALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLP 2573
Query: 886 ASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQP 990
SPLMF DQ QQDVIMVLKFPSNSPVTHVAANT P
Sbjct: 2574 QSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLP 2608
Score = 73.9 bits (180), Expect(2) = e-179
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Frame = +2
Query: 995 LAIPAVITVTANRLFAVNKWDNLPAHQGAVQ---DQPYQLPVEIDPLIASNTGMHRETIT 1165
L IPAV+TVT +RLFAVN+W N +GA DQ + LP+E+DPLIA+N+G+++ IT
Sbjct: 2610 LTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQIT 2669
Query: 1166 DLLDQ 1180
DL+DQ
Sbjct: 2670 DLVDQ 2674
>ref|NP_001191126.1| neurobeachin isoform 2 [Homo sapiens].
Length = 739
Score = 575 bits (1482), Expect(2) = e-179
Identities = 272/335 (81%), Positives = 304/335 (90%), Gaps = 5/335 (1%)
Frame = +1
Query: 1 ASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 180
A+PRQL+K+SNMTQRWQ REISNFEYLMFLNTIAGR+YNDLNQYPVFPWV+TNYESEELD
Sbjct: 67 ATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELD 126
Query: 181 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 360
LTLP NFRDLSKPIGALNPKRA F+AERYE+WEDDQ P +HY THYSTA+ L+WL+RIE
Sbjct: 127 LTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIE 186
Query: 361 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNL 540
PFTT+FLN GKFDH DRTFSS++R+WR SQRDTSD+KELIPEFYYLPEMFVN N YNL
Sbjct: 187 PFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYNL 246
Query: 541 GVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 720
GV +D VV+DV+LPPWA+ E+FVRINR+ALESEFVSCQLHQWIDLIFGYKQ+GPEAVR
Sbjct: 247 GVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVR 306
Query: 721 ALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQ----- 885
ALNVF+YLTYEG+VNL+SI+DP+LREA+E+QI++FGQTPSQLLIEPHPPR SAM
Sbjct: 307 ALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHLCFLP 366
Query: 886 ASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQP 990
SPLMF DQ QQDVIMVLKFPSNSPVTHVAANT P
Sbjct: 367 QSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLP 401
Score = 73.9 bits (180), Expect(2) = e-179
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Frame = +2
Query: 995 LAIPAVITVTANRLFAVNKWDNLPAHQGAVQ---DQPYQLPVEIDPLIASNTGMHRETIT 1165
L IPAV+TVT +RLFAVN+W N +GA DQ + LP+E+DPLIA+N+G+++ IT
Sbjct: 403 LTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQIT 462
Query: 1166 DLLDQ 1180
DL+DQ
Sbjct: 463 DLVDQ 467
>ref|NP_001107604.1| neurobeachin-like protein 1 [Homo sapiens].
Length = 2694
Score = 357 bits (916), Expect = 1e-98
Identities = 172/298 (57%), Positives = 226/298 (75%), Gaps = 3/298 (1%)
Frame = +1
Query: 4 SPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDL 183
SP++LFKAS +TQ+W +REISNF+YL+ +NT+AGR+YNDL QYPVFPW++ +Y SEELDL
Sbjct: 1993 SPQELFKASGLTQKWVNREISNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDL 2052
Query: 184 TLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQ--VPKFHYGTHYSTASFVLAWLLRI 357
P+ FRDLSKPIG +N K A E+YE++ED + KFHYGTHYS ++ V+ +L+R+
Sbjct: 2053 NNPAVFRDLSKPIGVVNEKNAKAMREKYENFEDPMGTIDKFHYGTHYSNSAGVMHYLIRV 2112
Query: 358 EPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYN 537
EPFTT + LQ G+FD ADR F SI W+ + D+KELIPEF+Y PE N N +N
Sbjct: 2113 EPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNPYDVKELIPEFFYFPEFLENQNQFN 2172
Query: 538 LGVMD-DGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEA 714
LG + +V+DV LP WA+++E+F+ +R ALESE+VS LH+WIDLIFGYKQ+GP A
Sbjct: 2173 LGRLQISKELVNDVILPKWAKSAEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAA 2232
Query: 715 VRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQA 888
V ALNVFYY +YEGAV+L++++D R+A+E I +FGQTP QLL EPHPPR SA +A
Sbjct: 2233 VEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEA 2290
>ref|NP_055990.1| neurobeachin-like protein 2 [Homo sapiens].
Length = 2754
Score = 353 bits (905), Expect = 2e-97
Identities = 171/299 (57%), Positives = 223/299 (74%), Gaps = 3/299 (1%)
Frame = +1
Query: 4 SPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDL 183
SP+++ +AS +TQ+W REISNFEYLM LNTIAGR+YNDL+QYPVFPWV+ +Y S LDL
Sbjct: 2054 SPQEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTLDL 2113
Query: 184 TLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQ--VPKFHYGTHYSTASFVLAWLLRI 357
+ P+ FRDLSKPIG +NPK A E+YES+ED + KFHYGTHYS A+ V+ +L+R+
Sbjct: 2114 SNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRV 2173
Query: 358 EPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYN 537
EPFT+ + LQ G+FD +DR F S++ AW+ +D+KELIPEF+Y P+ N N ++
Sbjct: 2174 EPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFD 2233
Query: 538 LGVMD-DGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEA 714
LG + V DV LPPWA + E+F++ +R ALESE+VS LH+WIDLIFGYKQ+GP A
Sbjct: 2234 LGCLQLTNEKVGDVVLPPWASSPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAA 2293
Query: 715 VRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQAS 891
ALNVFYY TYEGAV+L+ ++D R+A+E I +FGQTP QLL EPHP R SA +A+
Sbjct: 2294 EEALNVFYYCTYEGAVDLDHVTDERERKALEGIISNFGQTPCQLLKEPHPTRLSAEEAA 2352
>ref|NP_055806.2| WD repeat and FYVE domain-containing protein 3 [Homo sapiens].
Length = 3526
Score = 339 bits (870), Expect = 3e-93
Identities = 159/284 (55%), Positives = 213/284 (75%), Gaps = 4/284 (1%)
Frame = +1
Query: 31 NMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDL 210
++TQRW+ EISNF+YLM LNT+AGRSYNDL QYPVFPW++ +Y+SEE+DLT P FR+L
Sbjct: 2693 SVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNL 2752
Query: 211 SKPIGALNPKRAAFFAERYESWED--DQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
+KP+GA +R A + +RY+ WED + P +HYGTHYS+A V ++L+R+EPFT FL
Sbjct: 2753 AKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLR 2812
Query: 385 LQGGKFDHADRTFSSISRAWRN-SQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGT 561
LQGG FD ADR F S+ AW + S+ + +D+KELIPEF+YLPE N N+++LG +GT
Sbjct: 2813 LQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGT 2872
Query: 562 VVSDVELPPWAR-TSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFY 738
+ DV LPPWA+ EF+R++R ALE ++VS LH+WIDLIFGYKQQGP AV A+NVF+
Sbjct: 2873 KLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFH 2932
Query: 739 YLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPR 870
+L YEG V++ +I+DP+ A I +FGQ P QL +PHPP+
Sbjct: 2933 HLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPK 2976
>ref|NP_065996.1| WD repeat- and FYVE domain-containing protein 4 [Homo sapiens].
Length = 3184
Score = 305 bits (780), Expect = 7e-83
Identities = 150/292 (51%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Frame = +1
Query: 34 MTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLS 213
M Q+WQ R+ISNFEYLM+LNT AGR+ ND QYPVFPWV+ +Y SE L+L P FRDLS
Sbjct: 2538 MLQKWQKRDISNFEYLMYLNTAAGRTCNDYMQYPVFPWVLADYTSETLNLANPKIFRDLS 2597
Query: 214 KPIGALNPKRAAFFAERY---ESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
KP+GA +R F +R+ E E D + HY THYS+A V ++L+R+ PFT F
Sbjct: 2598 KPMGAQTKERKLKFIQRFKEVEKTEGDMTVQCHYYTHYSSAIIVASYLVRMPPFTQAFCA 2657
Query: 385 LQGGKFDHADRTFSSISRAWRNSQRDT-SDIKELIPEFYYLPEMFVNFNDYNLGVMDDGT 561
LQGG FD ADR F S+ W ++ R+ SD++EL PEF+YLPE N N G M DGT
Sbjct: 2658 LQGGSFDVADRMFHSVKSTWESASRENMSDVRELTPEFFYLPEFLTNCNGVEFGCMQDGT 2717
Query: 562 VVSDVELPPWARTS-EEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFY 738
V+ DV+LPPWA +F+ ++R ALES+FVS LH WIDLIFGYKQQGP AV A+N+F+
Sbjct: 2718 VLGDVQLPPWADGDPRKFISLHRKALESDFVSANLHHWIDLIFGYKQQGPAAVDAVNIFH 2777
Query: 739 YLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASP 894
Y ++L+SI+DP+++ + + +FGQ P QL +PHP R +A + P
Sbjct: 2778 PYFYGDRMDLSSITDPLIKSTILGFVSNFGQVPKQLFTKPHPARTAAGKPLP 2829
>ref|NP_003571.2| protein FAN isoform 1 [Homo sapiens].
Length = 917
Score = 291 bits (746), Expect = 6e-79
Identities = 150/283 (53%), Positives = 194/283 (68%), Gaps = 1/283 (0%)
Frame = +1
Query: 25 ASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFR 204
A + +WQ +SN++YL+ LN +A RS NDL+QYPVFPW+I +Y S ELDL+ P FR
Sbjct: 298 AESYMLQWQRGHLSNYQYLLHLNNLADRSCNDLSQYPVFPWIIHDYSSSELDLSNPGTFR 357
Query: 205 DLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
DLSKP+GALN +R RY+ + PKF YG+HYS+ +VL +L+RI P Y L
Sbjct: 358 DLSKPVGALNKERLERLLTRYQEMPE---PKFMYGSHYSSPGYVLFYLVRIAP--EYMLC 412
Query: 385 LQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMF-VNFNDYNLGVMDDGT 561
LQ G+FD+ADR F+SI+ W+N +D KELIPEFY F VN +LG G
Sbjct: 413 LQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEFYGDDVSFLVNSLKLDLGKRQGGQ 472
Query: 562 VVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYY 741
+V DVELPPWA + E+F++ ++ ALES +VS LH+WIDLIFGYKQ+G +AV A NVF+
Sbjct: 473 MVDDVELPPWASSPEDFLQKSKDALESNYVSEHLHEWIDLIFGYKQKGSDAVGAHNVFHP 532
Query: 742 LTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPR 870
LTYEG V+LNSI DP + A+ +QI FGQTP QL + PHP R
Sbjct: 533 LTYEGGVDLNSIQDPDEKVAMLTQILEFGQTPKQLFVTPHPRR 575
>ref|NP_001138244.1| protein FAN isoform 2 [Homo sapiens].
Length = 948
Score = 291 bits (746), Expect = 6e-79
Identities = 150/283 (53%), Positives = 194/283 (68%), Gaps = 1/283 (0%)
Frame = +1
Query: 25 ASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFR 204
A + +WQ +SN++YL+ LN +A RS NDL+QYPVFPW+I +Y S ELDL+ P FR
Sbjct: 329 AESYMLQWQRGHLSNYQYLLHLNNLADRSCNDLSQYPVFPWIIHDYSSSELDLSNPGTFR 388
Query: 205 DLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLN 384
DLSKP+GALN +R RY+ + PKF YG+HYS+ +VL +L+RI P Y L
Sbjct: 389 DLSKPVGALNKERLERLLTRYQEMPE---PKFMYGSHYSSPGYVLFYLVRIAP--EYMLC 443
Query: 385 LQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMF-VNFNDYNLGVMDDGT 561
LQ G+FD+ADR F+SI+ W+N +D KELIPEFY F VN +LG G
Sbjct: 444 LQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEFYGDDVSFLVNSLKLDLGKRQGGQ 503
Query: 562 VVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYY 741
+V DVELPPWA + E+F++ ++ ALES +VS LH+WIDLIFGYKQ+G +AV A NVF+
Sbjct: 504 MVDDVELPPWASSPEDFLQKSKDALESNYVSEHLHEWIDLIFGYKQKGSDAVGAHNVFHP 563
Query: 742 LTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPR 870
LTYEG V+LNSI DP + A+ +QI FGQTP QL + PHP R
Sbjct: 564 LTYEGGVDLNSIQDPDEKVAMLTQILEFGQTPKQLFVTPHPRR 606
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,464,062
Number of extensions: 1133128
Number of successful extensions: 3215
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3189
Number of HSP's successfully gapped: 17
Length of query: 393
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 288
Effective length of database: 14,835,944
Effective search space: 4272751872
Effective search space used: 4272751872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013496
(1180 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 337 8e-90
gb|GL895952.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 333 1e-88
gb|GL893911.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 129 4e-27
Sscrofa_Chr11 76 5e-11
>Sscrofa_Chr08
|| Length = 148491826
Score = 337 bits (170), Expect = 8e-90
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 630 ggctctggagagtgaatttgtttcctgccagcttcaccaatggattgatctcatttttgg 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83551760 ggctctggagagtgaatttgtttcctgccagcttcaccaatggattgatctcatttttgg 83551701
Query: 690 ctataaacagcaaggaccagaggctgttcgagccctcaatgtgttctattatctgaccta 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83551700 ctataaacagcaaggaccagaggctgttcgagccctcaatgtgttctattatctgaccta 83551641
Query: 750 tgaaggagctgtcaatctcaattcaatatctgatccgatattgagagagg 799
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83551640 tgaaggagctgtcaatctcaattcaatatctgatccgatattgagagagg 83551591
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 476 aggagttgattcctgaattttattacctccctgagatgtttgtcaacttcaatgattata 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83472744 aggagttgattcctgaattttattacctccctgagatgtttgtcaacttcaatgattata 83472803
Query: 536 atcttggagtgatggatgacgggacagtagtgtctgatgttgaacttcctccttgggcca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83472804 atcttggagtgatggatgacgggacagtagtgtctgatgttgaacttcctccttgggcca 83472863
Query: 596 gaacctcggaagaatttgttcgcataaacagattgg 631
||||||||||||||||||||||||||||||||||||
Sbjct: 83472864 gaacctcggaagaatttgttcgcataaacagattgg 83472899
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 215 agccaataggagctttgaatccaaaaagagcagcattctttgcagagcgttatgaatcct 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83452127 agccaataggagctttgaatccaaaaagagcagcattctttgcagagcgttatgaatcct 83452186
Query: 275 gggaagatgatcaagtcccaaagttccactatggtactcattactcaactgcaagttttg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83452187 gggaagatgatcaagtcccaaagttccactatggtactcattactcaactgcaagttttg 83452246
Query: 335 ttcttgcatggctgctaagaatag 358
||||||||||||||||||||||||
Sbjct: 83452247 ttcttgcatggctgctaagaatag 83452270
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 358 gaacccttcacaacgtatttcctaaatttgcaaggagggaaatttgatcacgcagatcga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83453303 gaacccttcacaacgtatttcctaaatttgcaaggagggaaatttgatcacgcagatcga 83453362
Query: 418 acattttcatcaatttccagagcctggcgaaacagtcagcgtgatacatctgatattaag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83453363 acattttcatcaatttccagagcctggcgaaacagtcagcgtgatacatctgatattaag 83453422
Query: 478 g 478
|
Sbjct: 83453423 g 83453423
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 101 caggacggagttacaatgacttaaatcagtatccagtgtttccctgggtgattactaatt 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83428940 caggacggagttacaatgacttaaatcagtatccagtgtttccctgggtgattactaatt 83428999
Query: 161 atgaatcagaagaactggatcttactttgccaagtaacttcagagatttgtccaag 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83429000 atgaatcagaagaactggatcttactttgccaagtaacttcagagatttgtccaag 83429055
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 gctagtccacgtcaactttttaaagcttctaatatgacccagcgatggcaacacagagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83373472 gctagtccacgtcaactttttaaagcttctaatatgacccagcgatggcaacacagagag 83373531
Query: 61 atttcaaattttgagtacttgatgtttctcaacacaatagcagg 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83373532 atttcaaattttgagtacttgatgtttctcaacacaatagcagg 83373575
>gb|GL895952.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4466
Length = 8647
Score = 333 bits (168), Expect = 1e-88
Identities = 178/180 (98%), Gaps = 1/180 (0%)
Strand = Plus / Plus
Query: 888 gagtccattgatgttcacagaccaagctcagcaggacgttatcatggttctaaagttccc 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5980 gagtccattgatgttcacagaccaagctcagcaggacgttatcatggttctaaagttccc 6039
Query: 948 ctccaactcccctgtcactcacgtggcggccaacacccagcctgggtttggcaattcctg 1007
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6040 ctccaactcccctgtcactcacgtggcggccaacacccagcctggg-ttggcaattcctg 6098
Query: 1008 ccgtgatcacagtcactgccaacaggctcttcgcagtgaacaagtgggacaaccttccgg 1067
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6099 ccgtgatcacagtcactgccaacaggctcttcgcagtgaacaagtggcacaaccttccgg 6158
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 797 aggctgtcgaatctcaaatccgaagctttgggcagacgccttctcaactactcatagagc 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1305 aggctgtcgaatctcaaatccgaagctttgggcagacgccttctcaactactcatagagc 1364
Query: 857 cccatcctcccagaggttctgccatgcaagcg 888
||||||||||||||||||||||||||||||||
Sbjct: 1365 cccatcctcccagaggttctgccatgcaagcg 1396
>gb|GL893911.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2629
Length = 73278
Score = 129 bits (65), Expect = 4e-27
Identities = 68/69 (98%)
Strand = Plus / Minus
Query: 1062 ttccggctcatcaaggtgctgtacaagaccagccataccagctgccagtggaaatcgatc 1121
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71378 ttccagctcatcaaggtgctgtacaagaccagccataccagctgccagtggaaatcgatc 71319
Query: 1122 ctctcatag 1130
|||||||||
Sbjct: 71318 ctctcatag 71310
Score = 73.8 bits (37), Expect = 2e-10
Identities = 51/53 (96%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 1129 agccagcaatacaggaatgcacagggagac-aatcacggaccttttagaccaa 1180
||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 66213 agccagcaatacaggaatgcaca-ggagacaaatcacggaccttttagaccaa 66162
>Sscrofa_Chr11
|| Length = 87690581
Score = 75.8 bits (38), Expect = 5e-11
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 630 ggctctggagagtgaatttgtttcctgccagcttcaccaatggattgatctcatttttgg 689
||||||||| ||||| |||||||| ||||| || || || |||||||| ||||| |||||
Sbjct: 11705896 ggctctggaaagtgagtttgtttcttgccaactccatcagtggattgacctcatatttgg 11705837
Query: 690 ctataaacagcaaggaccagaggctgttcgagccctcaatgtgttctattatctgaccta 749
|||||| |||| ||||||||| || || || || || ||||| || | || ||||||||
Sbjct: 11705836 ctataagcagcgaggaccagaagcagtccgggctctgaatgtttttcactacctgaccta 11705777
Query: 750 tgaagg 755
||||||
Sbjct: 11705776 tgaagg 11705771
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,134,202
Number of extensions: 177
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 11
Length of query: 1180
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1159
Effective length of database: 2,808,413,156
Effective search space: 3254950847804
Effective search space used: 3254950847804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)